HEADER TRANSFERASE 26-SEP-25 9YFK TITLE CRYSTAL STRUCTURE UTP--GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE FROM TITLE 2 BORDETELLA PERTUSSIS IN COMPLEX WITH URIDINE-5'-DIPHOSPHATE-GLUCOSE TITLE 3 (TWINNED LATTICE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: UTP--GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: 26-302; COMPND 5 SYNONYM: UDP-GLUCOSE PYROPHOSPHORYLASE; COMPND 6 EC: 2.7.7.9; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BORDETELLA PERTUSSIS TOHAMA I; SOURCE 3 ORGANISM_TAXID: 257313; SOURCE 4 GENE: BP3403; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: BOPEA.00118.A.B2 KEYWDS SSGCID, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 2 INFECTIOUS DISEASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 1 08-OCT-25 9YFK 0 JRNL AUTH L.LIU,S.LOVELL,S.SEIBOLD,K.P.BATTAILE JRNL TITL CRYSTAL STRUCTURE UTP--GLUCOSE-1-PHOSPHATE JRNL TITL 2 URIDYLYLTRANSFERASE FROM BORDETELLA PERTUSSIS IN COMPLEX JRNL TITL 3 WITH URIDINE-5'-DIPHOSPHATE-GLUCOSE (TWINNED LATTICE) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (2.0_5819: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.74 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 69600 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.840 REMARK 3 FREE R VALUE TEST SET COUNT : 3370 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.7400 - 4.5600 0.95 3429 180 0.1148 0.1544 REMARK 3 2 4.5600 - 3.6200 0.95 3322 169 0.1111 0.1769 REMARK 3 3 3.6200 - 3.1600 0.95 3334 165 0.1525 0.1952 REMARK 3 4 3.1600 - 2.8700 0.95 3298 173 0.1819 0.2510 REMARK 3 5 2.8700 - 2.6700 0.95 3307 151 0.1964 0.1928 REMARK 3 6 2.6700 - 2.5100 0.95 3339 169 0.2066 0.2329 REMARK 3 7 2.5100 - 2.3800 0.94 3311 204 0.2118 0.2164 REMARK 3 8 2.3800 - 2.2800 0.95 3261 145 0.2120 0.2482 REMARK 3 9 2.2800 - 2.1900 0.95 3358 153 0.2230 0.2389 REMARK 3 10 2.1900 - 2.1200 0.95 3318 156 0.2340 0.2453 REMARK 3 11 2.1200 - 2.0500 0.95 3306 148 0.2362 0.2516 REMARK 3 12 2.0500 - 1.9900 0.95 3276 179 0.2356 0.2829 REMARK 3 13 1.9900 - 1.9400 0.94 3262 217 0.2365 0.2656 REMARK 3 14 1.9400 - 1.8900 0.94 3269 179 0.2577 0.2851 REMARK 3 15 1.8900 - 1.8500 0.95 3315 165 0.2622 0.2794 REMARK 3 16 1.8500 - 1.8100 0.95 3280 156 0.2706 0.2850 REMARK 3 17 1.8100 - 1.7700 0.95 3314 169 0.2821 0.2360 REMARK 3 18 1.7700 - 1.7400 0.95 3227 175 0.2781 0.2651 REMARK 3 19 1.7400 - 1.7100 0.96 3369 121 0.2942 0.2622 REMARK 3 20 1.7100 - 1.6800 0.95 3345 186 0.2880 0.2817 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.000 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4436 REMARK 3 ANGLE : 0.957 6066 REMARK 3 CHIRALITY : 0.056 722 REMARK 3 PLANARITY : 0.009 784 REMARK 3 DIHEDRAL : 14.693 1738 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 25 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.0705 7.6704 8.7324 REMARK 3 T TENSOR REMARK 3 T11: 0.2039 T22: 0.2418 REMARK 3 T33: 0.2229 T12: 0.0135 REMARK 3 T13: 0.0129 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 0.8766 L22: 0.6465 REMARK 3 L33: 0.9021 L12: -0.0111 REMARK 3 L13: 0.2657 L23: 0.1691 REMARK 3 S TENSOR REMARK 3 S11: -0.0316 S12: 0.0227 S13: 0.1419 REMARK 3 S21: 0.0483 S22: 0.0162 S23: -0.0019 REMARK 3 S31: -0.1099 S32: 0.0577 S33: 0.0255 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 165 THROUGH 264 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.5540 -7.7112 15.0042 REMARK 3 T TENSOR REMARK 3 T11: 0.2074 T22: 0.3043 REMARK 3 T33: 0.2347 T12: 0.0265 REMARK 3 T13: 0.0015 T23: -0.0140 REMARK 3 L TENSOR REMARK 3 L11: 0.4671 L22: 0.9049 REMARK 3 L33: 0.6101 L12: -0.2452 REMARK 3 L13: 0.1030 L23: -0.2076 REMARK 3 S TENSOR REMARK 3 S11: -0.0058 S12: 0.0180 S13: 0.0816 REMARK 3 S21: 0.0369 S22: 0.0176 S23: -0.1325 REMARK 3 S31: 0.0471 S32: 0.1360 S33: -0.0058 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 265 THROUGH 302 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.4189 3.8428 25.6009 REMARK 3 T TENSOR REMARK 3 T11: 0.2298 T22: 0.2654 REMARK 3 T33: 0.1932 T12: 0.0066 REMARK 3 T13: -0.0130 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 1.0643 L22: 0.8741 REMARK 3 L33: 0.3956 L12: -0.2730 REMARK 3 L13: -0.2961 L23: 0.2535 REMARK 3 S TENSOR REMARK 3 S11: -0.0669 S12: -0.1889 S13: 0.0143 REMARK 3 S21: 0.1892 S22: 0.0323 S23: -0.0447 REMARK 3 S31: 0.0407 S32: 0.1483 S33: 0.0571 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 25 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.5276 11.0078 15.0500 REMARK 3 T TENSOR REMARK 3 T11: 0.2302 T22: 0.2427 REMARK 3 T33: 0.2181 T12: 0.0149 REMARK 3 T13: 0.0416 T23: -0.0258 REMARK 3 L TENSOR REMARK 3 L11: 2.4261 L22: 1.0517 REMARK 3 L33: 0.5807 L12: 0.6930 REMARK 3 L13: 0.0718 L23: -0.1034 REMARK 3 S TENSOR REMARK 3 S11: 0.1088 S12: 0.0057 S13: 0.3449 REMARK 3 S21: 0.2035 S22: -0.0127 S23: 0.1298 REMARK 3 S31: -0.0357 S32: -0.1363 S33: -0.0961 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 50 THROUGH 176 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.3511 2.2670 15.3671 REMARK 3 T TENSOR REMARK 3 T11: 0.2046 T22: 0.2487 REMARK 3 T33: 0.2137 T12: -0.0064 REMARK 3 T13: 0.0310 T23: -0.0156 REMARK 3 L TENSOR REMARK 3 L11: 0.6273 L22: 0.5617 REMARK 3 L33: 0.8197 L12: 0.0338 REMARK 3 L13: 0.2977 L23: -0.0695 REMARK 3 S TENSOR REMARK 3 S11: 0.0468 S12: -0.0288 S13: -0.0346 REMARK 3 S21: 0.0171 S22: -0.0049 S23: 0.0722 REMARK 3 S31: 0.1109 S32: -0.0311 S33: -0.0284 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 177 THROUGH 270 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.1668 20.1040 26.8465 REMARK 3 T TENSOR REMARK 3 T11: 0.2346 T22: 0.2813 REMARK 3 T33: 0.2533 T12: 0.0059 REMARK 3 T13: 0.0689 T23: -0.0352 REMARK 3 L TENSOR REMARK 3 L11: 0.4387 L22: 0.5540 REMARK 3 L33: 0.7988 L12: -0.0797 REMARK 3 L13: 0.2271 L23: 0.2281 REMARK 3 S TENSOR REMARK 3 S11: 0.0145 S12: -0.0128 S13: 0.0707 REMARK 3 S21: 0.0357 S22: -0.0781 S23: 0.1360 REMARK 3 S31: -0.0787 S32: -0.1318 S33: 0.0694 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 271 THROUGH 302 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.3874 5.2892 31.9903 REMARK 3 T TENSOR REMARK 3 T11: 0.2463 T22: 0.2786 REMARK 3 T33: 0.2094 T12: 0.0052 REMARK 3 T13: 0.0437 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 1.1333 L22: 0.6519 REMARK 3 L33: 0.3361 L12: -0.4310 REMARK 3 L13: 0.0250 L23: 0.0011 REMARK 3 S TENSOR REMARK 3 S11: -0.0681 S12: -0.1670 S13: 0.0248 REMARK 3 S21: 0.1495 S22: 0.0081 S23: -0.0022 REMARK 3 S31: 0.0894 S32: -0.0425 S33: 0.0555 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9YFK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-SEP-25. REMARK 100 THE DEPOSITION ID IS D_1000300449. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUN-25 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69602 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.680 REMARK 200 RESOLUTION RANGE LOW (A) : 46.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.72 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 1.09100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BERKELEY B1: 30% PEG 3350, 400 MM REMARK 280 NACL, 100 MM TRIS, PH 8.5. BOPEA.00118.A.B2.PW39372 AT 25.3 MG/ REMARK 280 ML. 2MM UTP, 2MM D-GLUCOSE-1-PHOSPHATE AND 2MM MGCL2 ADDED TO REMARK 280 PROTEIN PRIOR TO CRYSTALLIZATION. THE PRODUCT URIDINE-5'- REMARK 280 DIPHOSPHATE-GLUCOSE (UPG) WAS BOUND. PLATE 19925 B1 DROP 3, PUCK: REMARK 280 PSL-0713, CRYO: 80% CRYSTALLANT + 20% GLYCEROL, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 46.64955 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.51350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.74347 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 46.64955 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.51350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 46.74347 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 18 REMARK 465 ALA A 19 REMARK 465 HIS A 20 REMARK 465 HIS A 21 REMARK 465 HIS A 22 REMARK 465 HIS A 23 REMARK 465 HIS A 24 REMARK 465 MET B 18 REMARK 465 ALA B 19 REMARK 465 HIS B 20 REMARK 465 HIS B 21 REMARK 465 HIS B 22 REMARK 465 HIS B 23 REMARK 465 HIS B 24 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 40 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 502 O HOH B 558 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 56 -84.03 68.57 REMARK 500 ASP A 57 20.11 -140.83 REMARK 500 ASN A 83 52.47 -93.09 REMARK 500 VAL B 56 -82.29 70.70 REMARK 500 ASP B 57 19.66 -140.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 156 OD2 REMARK 620 2 UPG A 401 O2A 91.9 REMARK 620 3 UPG A 401 O2B 163.1 82.4 REMARK 620 4 HOH A 525 O 78.2 85.9 85.6 REMARK 620 5 HOH A 526 O 85.7 170.8 97.4 84.9 REMARK 620 6 HOH A 600 O 99.2 93.8 97.0 177.4 95.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 156 OD2 REMARK 620 2 UPG B 401 O2A 94.5 REMARK 620 3 UPG B 401 O2B 172.5 86.4 REMARK 620 4 HOH B 536 O 79.5 100.7 93.0 REMARK 620 5 HOH B 558 O 84.7 176.4 94.8 82.6 REMARK 620 6 HOH B 568 O 95.6 84.6 91.9 173.1 92.0 REMARK 620 N 1 2 3 4 5 DBREF 9YFK A 26 302 UNP Q7VTV0 Q7VTV0_BORPE 26 302 DBREF 9YFK B 26 302 UNP Q7VTV0 Q7VTV0_BORPE 26 302 SEQADV 9YFK MET A 18 UNP Q7VTV0 INITIATING METHIONINE SEQADV 9YFK ALA A 19 UNP Q7VTV0 EXPRESSION TAG SEQADV 9YFK HIS A 20 UNP Q7VTV0 EXPRESSION TAG SEQADV 9YFK HIS A 21 UNP Q7VTV0 EXPRESSION TAG SEQADV 9YFK HIS A 22 UNP Q7VTV0 EXPRESSION TAG SEQADV 9YFK HIS A 23 UNP Q7VTV0 EXPRESSION TAG SEQADV 9YFK HIS A 24 UNP Q7VTV0 EXPRESSION TAG SEQADV 9YFK HIS A 25 UNP Q7VTV0 EXPRESSION TAG SEQADV 9YFK MET B 18 UNP Q7VTV0 INITIATING METHIONINE SEQADV 9YFK ALA B 19 UNP Q7VTV0 EXPRESSION TAG SEQADV 9YFK HIS B 20 UNP Q7VTV0 EXPRESSION TAG SEQADV 9YFK HIS B 21 UNP Q7VTV0 EXPRESSION TAG SEQADV 9YFK HIS B 22 UNP Q7VTV0 EXPRESSION TAG SEQADV 9YFK HIS B 23 UNP Q7VTV0 EXPRESSION TAG SEQADV 9YFK HIS B 24 UNP Q7VTV0 EXPRESSION TAG SEQADV 9YFK HIS B 25 UNP Q7VTV0 EXPRESSION TAG SEQRES 1 A 285 MET ALA HIS HIS HIS HIS HIS HIS VAL VAL ARG LYS ALA SEQRES 2 A 285 VAL PHE PRO VAL ALA GLY MET GLY THR ARG PHE LEU PRO SEQRES 3 A 285 ALA THR LYS ALA MET PRO LYS GLU MET LEU PRO VAL VAL SEQRES 4 A 285 ASP LYS PRO LEU ILE GLN TYR ALA VAL GLU GLU ALA VAL SEQRES 5 A 285 ALA ALA GLY ILE THR ASP LEU ILE PHE VAL THR GLY ARG SEQRES 6 A 285 ASN LYS ARG ALA ILE GLU ASP HIS PHE ASP ALA ALA PRO SEQRES 7 A 285 GLU LEU GLU THR ASP LEU GLU ALA LYS GLY LYS HIS GLU SEQRES 8 A 285 LEU LEU ALA LEU VAL ARG ASP ILE LEU PRO ALA HIS VAL SEQRES 9 A 285 ASN CYS LEU TYR ILE ARG GLN SER ALA PRO LEU GLY LEU SEQRES 10 A 285 GLY HIS ALA VAL LEU THR ALA ALA PRO ALA VAL GLY ASN SEQRES 11 A 285 GLU PRO PHE ALA VAL LEU LEU ALA ASP ASP LEU ILE ASP SEQRES 12 A 285 ALA ASP THR PRO VAL LEU LYS GLN LEU ILE ASP VAL ALA SEQRES 13 A 285 VAL ALA ARG GLN GLY SER VAL LEU GLY VAL GLN GLU VAL SEQRES 14 A 285 PRO ARG GLU ASP THR ARG LYS TYR GLY ILE VAL ALA SER SEQRES 15 A 285 GLN PRO VAL ASP ALA ARG THR GLU ARG VAL THR HIS ILE SEQRES 16 A 285 VAL GLU LYS PRO ALA PRO GLU GLN ALA PRO THR THR LEU SEQRES 17 A 285 ALA VAL VAL GLY ARG TYR VAL LEU GLU ALA ALA ILE PHE SEQRES 18 A 285 ASP HIS LEU ARG ALA THR THR VAL GLY ALA GLY ASN GLU SEQRES 19 A 285 ILE GLN LEU THR ASP GLY ILE ALA ALA LEU LEU ARG GLU SEQRES 20 A 285 ARG ASP VAL TYR ALA HIS ARG TYR ASP GLY LYS ARG TYR SEQRES 21 A 285 ASP CYS GLY SER LYS ALA GLY MET PHE GLN ALA THR VAL SEQRES 22 A 285 ALA LEU GLY ARG LYS TYR HIS GLY LEU ILE PRO GLU SEQRES 1 B 285 MET ALA HIS HIS HIS HIS HIS HIS VAL VAL ARG LYS ALA SEQRES 2 B 285 VAL PHE PRO VAL ALA GLY MET GLY THR ARG PHE LEU PRO SEQRES 3 B 285 ALA THR LYS ALA MET PRO LYS GLU MET LEU PRO VAL VAL SEQRES 4 B 285 ASP LYS PRO LEU ILE GLN TYR ALA VAL GLU GLU ALA VAL SEQRES 5 B 285 ALA ALA GLY ILE THR ASP LEU ILE PHE VAL THR GLY ARG SEQRES 6 B 285 ASN LYS ARG ALA ILE GLU ASP HIS PHE ASP ALA ALA PRO SEQRES 7 B 285 GLU LEU GLU THR ASP LEU GLU ALA LYS GLY LYS HIS GLU SEQRES 8 B 285 LEU LEU ALA LEU VAL ARG ASP ILE LEU PRO ALA HIS VAL SEQRES 9 B 285 ASN CYS LEU TYR ILE ARG GLN SER ALA PRO LEU GLY LEU SEQRES 10 B 285 GLY HIS ALA VAL LEU THR ALA ALA PRO ALA VAL GLY ASN SEQRES 11 B 285 GLU PRO PHE ALA VAL LEU LEU ALA ASP ASP LEU ILE ASP SEQRES 12 B 285 ALA ASP THR PRO VAL LEU LYS GLN LEU ILE ASP VAL ALA SEQRES 13 B 285 VAL ALA ARG GLN GLY SER VAL LEU GLY VAL GLN GLU VAL SEQRES 14 B 285 PRO ARG GLU ASP THR ARG LYS TYR GLY ILE VAL ALA SER SEQRES 15 B 285 GLN PRO VAL ASP ALA ARG THR GLU ARG VAL THR HIS ILE SEQRES 16 B 285 VAL GLU LYS PRO ALA PRO GLU GLN ALA PRO THR THR LEU SEQRES 17 B 285 ALA VAL VAL GLY ARG TYR VAL LEU GLU ALA ALA ILE PHE SEQRES 18 B 285 ASP HIS LEU ARG ALA THR THR VAL GLY ALA GLY ASN GLU SEQRES 19 B 285 ILE GLN LEU THR ASP GLY ILE ALA ALA LEU LEU ARG GLU SEQRES 20 B 285 ARG ASP VAL TYR ALA HIS ARG TYR ASP GLY LYS ARG TYR SEQRES 21 B 285 ASP CYS GLY SER LYS ALA GLY MET PHE GLN ALA THR VAL SEQRES 22 B 285 ALA LEU GLY ARG LYS TYR HIS GLY LEU ILE PRO GLU HET UPG A 401 36 HET MG A 402 1 HET UPG B 401 36 HET MG B 402 1 HETNAM UPG URIDINE-5'-DIPHOSPHATE-GLUCOSE HETNAM MG MAGNESIUM ION HETSYN UPG URIDINE-5'-MONOPHOSPHATE GLUCOPYRANOSYL-MONOPHOSPHATE HETSYN 2 UPG ESTER FORMUL 3 UPG 2(C15 H24 N2 O17 P2) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *283(H2 O) HELIX 1 AA1 GLY A 38 LEU A 42 5 5 HELIX 2 AA2 PRO A 43 ALA A 47 5 5 HELIX 3 AA3 PRO A 49 MET A 52 5 4 HELIX 4 AA4 LEU A 60 ALA A 71 1 12 HELIX 5 AA5 ASN A 83 ASP A 92 1 10 HELIX 6 AA6 ALA A 94 LYS A 104 1 11 HELIX 7 AA7 LYS A 106 ASP A 115 1 10 HELIX 8 AA8 GLY A 133 ALA A 141 1 9 HELIX 9 AA9 ALA A 141 GLY A 146 1 6 HELIX 10 AB1 PRO A 164 GLN A 177 1 14 HELIX 11 AB2 PRO A 187 LYS A 193 5 7 HELIX 12 AB3 ALA A 236 ALA A 243 1 8 HELIX 13 AB4 GLY A 247 GLU A 251 5 5 HELIX 14 AB5 GLN A 253 ARG A 265 1 13 HELIX 15 AB6 SER A 281 GLY A 298 1 18 HELIX 16 AB7 GLY B 38 LEU B 42 5 5 HELIX 17 AB8 PRO B 49 MET B 52 5 4 HELIX 18 AB9 LEU B 60 ALA B 71 1 12 HELIX 19 AC1 ASN B 83 ASP B 92 1 10 HELIX 20 AC2 ALA B 94 LYS B 104 1 11 HELIX 21 AC3 LYS B 106 ASP B 115 1 10 HELIX 22 AC4 GLY B 133 ALA B 141 1 9 HELIX 23 AC5 ALA B 141 GLY B 146 1 6 HELIX 24 AC6 PRO B 164 GLN B 177 1 14 HELIX 25 AC7 PRO B 187 LYS B 193 5 7 HELIX 26 AC8 ALA B 236 ALA B 243 1 8 HELIX 27 AC9 GLY B 247 GLU B 251 5 5 HELIX 28 AD1 GLN B 253 ARG B 265 1 13 HELIX 29 AD2 SER B 281 GLY B 298 1 18 SHEET 1 AA110 ASN A 122 ARG A 127 0 SHEET 2 AA110 ASP A 75 THR A 80 1 N LEU A 76 O ASN A 122 SHEET 3 AA110 LYS A 29 PRO A 33 1 N PHE A 32 O ILE A 77 SHEET 4 AA110 PHE A 150 LEU A 153 1 O ALA A 151 N LYS A 29 SHEET 5 AA110 LEU A 225 LEU A 233 -1 O LEU A 233 N PHE A 150 SHEET 6 AA110 GLY A 195 PRO A 201 -1 N VAL A 197 O LEU A 225 SHEET 7 AA110 THR A 206 GLU A 214 -1 O THR A 210 N ALA A 198 SHEET 8 AA110 VAL A 267 ARG A 271 -1 O VAL A 267 N VAL A 209 SHEET 9 AA110 SER A 179 GLU A 185 1 N LEU A 181 O HIS A 270 SHEET 10 AA110 LEU A 225 LEU A 233 -1 O VAL A 232 N VAL A 180 SHEET 1 AA2 2 PRO A 54 VAL A 55 0 SHEET 2 AA2 2 LYS A 58 PRO A 59 -1 O LYS A 58 N VAL A 55 SHEET 1 AA3 2 ASP A 157 ASP A 160 0 SHEET 2 AA3 2 LYS A 275 ASP A 278 -1 O LYS A 275 N ASP A 160 SHEET 1 AA410 ASN B 122 ARG B 127 0 SHEET 2 AA410 ASP B 75 THR B 80 1 N THR B 80 O ILE B 126 SHEET 3 AA410 LYS B 29 VAL B 34 1 N PHE B 32 O ILE B 77 SHEET 4 AA410 PHE B 150 LEU B 153 1 O ALA B 151 N LYS B 29 SHEET 5 AA410 LEU B 225 LEU B 233 -1 O TYR B 231 N VAL B 152 SHEET 6 AA410 GLY B 195 PRO B 201 -1 N VAL B 197 O LEU B 225 SHEET 7 AA410 THR B 206 GLU B 214 -1 O VAL B 213 N ILE B 196 SHEET 8 AA410 VAL B 267 HIS B 270 -1 O VAL B 267 N VAL B 209 SHEET 9 AA410 SER B 179 GLU B 185 1 N LEU B 181 O HIS B 270 SHEET 10 AA410 LEU B 225 LEU B 233 -1 O VAL B 232 N VAL B 180 SHEET 1 AA5 2 PRO B 54 VAL B 55 0 SHEET 2 AA5 2 LYS B 58 PRO B 59 -1 O LYS B 58 N VAL B 55 SHEET 1 AA6 2 ASP B 157 ASP B 160 0 SHEET 2 AA6 2 LYS B 275 ASP B 278 -1 O TYR B 277 N LEU B 158 LINK OD2 ASP A 156 MG MG A 402 1555 1555 1.89 LINK O2A UPG A 401 MG MG A 402 1555 1555 2.23 LINK O2B UPG A 401 MG MG A 402 1555 1555 1.91 LINK MG MG A 402 O HOH A 525 1555 1555 2.14 LINK MG MG A 402 O HOH A 526 1555 1555 2.10 LINK MG MG A 402 O HOH A 600 1555 1555 2.19 LINK OD2 ASP B 156 MG MG B 402 1555 1555 2.03 LINK O2A UPG B 401 MG MG B 402 1555 1555 2.04 LINK O2B UPG B 401 MG MG B 402 1555 1555 2.13 LINK MG MG B 402 O HOH B 536 1555 1555 2.13 LINK MG MG B 402 O HOH B 558 1555 1555 2.12 LINK MG MG B 402 O HOH B 568 1555 1555 2.21 CISPEP 1 LEU A 42 PRO A 43 0 5.92 CISPEP 2 LEU B 42 PRO B 43 0 3.35 CRYST1 93.397 71.027 93.487 90.00 90.06 90.00 I 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010707 0.000000 0.000012 0.00000 SCALE2 0.000000 0.014079 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010697 0.00000 CONECT 1002 4311 CONECT 3129 4348 CONECT 4275 4276 4280 4283 CONECT 4276 4275 4277 4281 CONECT 4277 4276 4278 CONECT 4278 4277 4279 4282 CONECT 4279 4278 4280 CONECT 4280 4275 4279 CONECT 4281 4276 CONECT 4282 4278 CONECT 4283 4275 4284 4288 CONECT 4284 4283 4285 4286 CONECT 4285 4284 CONECT 4286 4284 4287 4289 CONECT 4287 4286 4288 4290 CONECT 4288 4283 4287 CONECT 4289 4286 CONECT 4290 4287 4291 CONECT 4291 4290 4292 CONECT 4292 4291 4293 4294 4295 CONECT 4293 4292 CONECT 4294 4292 4311 CONECT 4295 4292 4296 CONECT 4296 4295 4297 4298 4299 CONECT 4297 4296 CONECT 4298 4296 4311 CONECT 4299 4296 4300 CONECT 4300 4299 4301 4309 CONECT 4301 4300 4302 4306 CONECT 4302 4301 4303 4307 CONECT 4303 4302 4304 4308 CONECT 4304 4303 4305 4309 CONECT 4305 4304 4310 CONECT 4306 4301 CONECT 4307 4302 CONECT 4308 4303 CONECT 4309 4300 4304 CONECT 4310 4305 CONECT 4311 1002 4294 4298 4373 CONECT 4311 4374 4448 CONECT 4312 4313 4317 4320 CONECT 4313 4312 4314 4318 CONECT 4314 4313 4315 CONECT 4315 4314 4316 4319 CONECT 4316 4315 4317 CONECT 4317 4312 4316 CONECT 4318 4313 CONECT 4319 4315 CONECT 4320 4312 4321 4325 CONECT 4321 4320 4322 4323 CONECT 4322 4321 CONECT 4323 4321 4324 4326 CONECT 4324 4323 4325 4327 CONECT 4325 4320 4324 CONECT 4326 4323 CONECT 4327 4324 4328 CONECT 4328 4327 4329 CONECT 4329 4328 4330 4331 4332 CONECT 4330 4329 CONECT 4331 4329 4348 CONECT 4332 4329 4333 CONECT 4333 4332 4334 4335 4336 CONECT 4334 4333 CONECT 4335 4333 4348 CONECT 4336 4333 4337 CONECT 4337 4336 4338 4346 CONECT 4338 4337 4339 4343 CONECT 4339 4338 4340 4344 CONECT 4340 4339 4341 4345 CONECT 4341 4340 4342 4346 CONECT 4342 4341 4347 CONECT 4343 4338 CONECT 4344 4339 CONECT 4345 4340 CONECT 4346 4337 4341 CONECT 4347 4342 CONECT 4348 3129 4331 4335 4523 CONECT 4348 4545 4555 CONECT 4373 4311 CONECT 4374 4311 CONECT 4448 4311 CONECT 4523 4348 CONECT 4545 4348 CONECT 4555 4348 MASTER 407 0 4 29 28 0 0 6 4587 2 84 44 END