data_9YIN # _entry.id 9YIN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.406 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9YIN pdb_00009yin 10.2210/pdb9yin/pdb WWPDB D_1000300607 ? ? EMDB EMD-72999 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-11-12 ? 2 'EM metadata' 1 0 2025-11-12 ? 3 FSC 1 0 2025-11-12 ? 4 'Half map' 1 0 2025-11-12 1 5 'Half map' 1 0 2025-11-12 2 6 Image 1 0 2025-11-12 ? 7 Mask 1 0 2025-11-12 1 8 'Primary map' 1 0 2025-11-12 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 FSC repository 'Initial release' ? ? 4 4 'Half map' repository 'Initial release' ? ? 5 5 'Half map' repository 'Initial release' ? ? 6 6 Image repository 'Initial release' ? ? 7 7 Mask repository 'Initial release' ? ? 8 8 'Primary map' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9YIN _pdbx_database_status.recvd_initial_deposition_date 2025-10-01 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Sf11 bacteriophage portal' _pdbx_database_related.db_id EMD-72999 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email kparent@msu.edu _pdbx_contact_author.name_first Kristin _pdbx_contact_author.name_last Parent _pdbx_contact_author.name_mi N. _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-6095-0628 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Subramanian, S.' 1 0000-0002-8684-6984 'Parent, K.N.' 2 0000-0002-6095-0628 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Structure of Shigella bacteriophage Sf11' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Subramanian, S.' 1 ? primary 'Dover, J.A.' 2 ? primary 'Parent, K.N.' 3 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Sf11 portal' _entity.formula_weight 52372.395 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MSKIDALNAYIRDRVANNNRAIQQQRLCAGGKNLDQKHDRLWTECGYKQEINAEDFRFAYERYPLANAAVNIVLNKSWHG MPTVLENDADDEATSPWEKSVNDILKKALPFIRDADKRNLINRYSALILQIRDGKQWSEPVDITKTRRIKDKSIVRFIPV WEEQLRVSAWNNDETSEDYGMPEMYEYQESAVEDFDSDGKPERSVQIHPDRIIILAEGSFDGSMFSGVPLLRAGFNSLID CAKVSGSSAEGLLKNSSRQLNVSFNKDNVSAQSLAQQMQVPVDELADLLNENIEMLNSGIDAAMFSFGSDVSVLSTSMSD PEPFMYVAASQFAASVNIPLNSLLGSRSGVLASANDEQSLAMMAMQRRDGWLDYLVGSFVERLITFGIVDKAPAAGYYCK WNDLLEPTQNDKAELIVKLAQAAQSAANAGVGQILTDDEIRGFLGLEPIEMPDGYMEDTPPEGEDEDTPV ; _entity_poly.pdbx_seq_one_letter_code_can ;MSKIDALNAYIRDRVANNNRAIQQQRLCAGGKNLDQKHDRLWTECGYKQEINAEDFRFAYERYPLANAAVNIVLNKSWHG MPTVLENDADDEATSPWEKSVNDILKKALPFIRDADKRNLINRYSALILQIRDGKQWSEPVDITKTRRIKDKSIVRFIPV WEEQLRVSAWNNDETSEDYGMPEMYEYQESAVEDFDSDGKPERSVQIHPDRIIILAEGSFDGSMFSGVPLLRAGFNSLID CAKVSGSSAEGLLKNSSRQLNVSFNKDNVSAQSLAQQMQVPVDELADLLNENIEMLNSGIDAAMFSFGSDVSVLSTSMSD PEPFMYVAASQFAASVNIPLNSLLGSRSGVLASANDEQSLAMMAMQRRDGWLDYLVGSFVERLITFGIVDKAPAAGYYCK WNDLLEPTQNDKAELIVKLAQAAQSAANAGVGQILTDDEIRGFLGLEPIEMPDGYMEDTPPEGEDEDTPV ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 SER n 1 3 LYS n 1 4 ILE n 1 5 ASP n 1 6 ALA n 1 7 LEU n 1 8 ASN n 1 9 ALA n 1 10 TYR n 1 11 ILE n 1 12 ARG n 1 13 ASP n 1 14 ARG n 1 15 VAL n 1 16 ALA n 1 17 ASN n 1 18 ASN n 1 19 ASN n 1 20 ARG n 1 21 ALA n 1 22 ILE n 1 23 GLN n 1 24 GLN n 1 25 GLN n 1 26 ARG n 1 27 LEU n 1 28 CYS n 1 29 ALA n 1 30 GLY n 1 31 GLY n 1 32 LYS n 1 33 ASN n 1 34 LEU n 1 35 ASP n 1 36 GLN n 1 37 LYS n 1 38 HIS n 1 39 ASP n 1 40 ARG n 1 41 LEU n 1 42 TRP n 1 43 THR n 1 44 GLU n 1 45 CYS n 1 46 GLY n 1 47 TYR n 1 48 LYS n 1 49 GLN n 1 50 GLU n 1 51 ILE n 1 52 ASN n 1 53 ALA n 1 54 GLU n 1 55 ASP n 1 56 PHE n 1 57 ARG n 1 58 PHE n 1 59 ALA n 1 60 TYR n 1 61 GLU n 1 62 ARG n 1 63 TYR n 1 64 PRO n 1 65 LEU n 1 66 ALA n 1 67 ASN n 1 68 ALA n 1 69 ALA n 1 70 VAL n 1 71 ASN n 1 72 ILE n 1 73 VAL n 1 74 LEU n 1 75 ASN n 1 76 LYS n 1 77 SER n 1 78 TRP n 1 79 HIS n 1 80 GLY n 1 81 MET n 1 82 PRO n 1 83 THR n 1 84 VAL n 1 85 LEU n 1 86 GLU n 1 87 ASN n 1 88 ASP n 1 89 ALA n 1 90 ASP n 1 91 ASP n 1 92 GLU n 1 93 ALA n 1 94 THR n 1 95 SER n 1 96 PRO n 1 97 TRP n 1 98 GLU n 1 99 LYS n 1 100 SER n 1 101 VAL n 1 102 ASN n 1 103 ASP n 1 104 ILE n 1 105 LEU n 1 106 LYS n 1 107 LYS n 1 108 ALA n 1 109 LEU n 1 110 PRO n 1 111 PHE n 1 112 ILE n 1 113 ARG n 1 114 ASP n 1 115 ALA n 1 116 ASP n 1 117 LYS n 1 118 ARG n 1 119 ASN n 1 120 LEU n 1 121 ILE n 1 122 ASN n 1 123 ARG n 1 124 TYR n 1 125 SER n 1 126 ALA n 1 127 LEU n 1 128 ILE n 1 129 LEU n 1 130 GLN n 1 131 ILE n 1 132 ARG n 1 133 ASP n 1 134 GLY n 1 135 LYS n 1 136 GLN n 1 137 TRP n 1 138 SER n 1 139 GLU n 1 140 PRO n 1 141 VAL n 1 142 ASP n 1 143 ILE n 1 144 THR n 1 145 LYS n 1 146 THR n 1 147 ARG n 1 148 ARG n 1 149 ILE n 1 150 LYS n 1 151 ASP n 1 152 LYS n 1 153 SER n 1 154 ILE n 1 155 VAL n 1 156 ARG n 1 157 PHE n 1 158 ILE n 1 159 PRO n 1 160 VAL n 1 161 TRP n 1 162 GLU n 1 163 GLU n 1 164 GLN n 1 165 LEU n 1 166 ARG n 1 167 VAL n 1 168 SER n 1 169 ALA n 1 170 TRP n 1 171 ASN n 1 172 ASN n 1 173 ASP n 1 174 GLU n 1 175 THR n 1 176 SER n 1 177 GLU n 1 178 ASP n 1 179 TYR n 1 180 GLY n 1 181 MET n 1 182 PRO n 1 183 GLU n 1 184 MET n 1 185 TYR n 1 186 GLU n 1 187 TYR n 1 188 GLN n 1 189 GLU n 1 190 SER n 1 191 ALA n 1 192 VAL n 1 193 GLU n 1 194 ASP n 1 195 PHE n 1 196 ASP n 1 197 SER n 1 198 ASP n 1 199 GLY n 1 200 LYS n 1 201 PRO n 1 202 GLU n 1 203 ARG n 1 204 SER n 1 205 VAL n 1 206 GLN n 1 207 ILE n 1 208 HIS n 1 209 PRO n 1 210 ASP n 1 211 ARG n 1 212 ILE n 1 213 ILE n 1 214 ILE n 1 215 LEU n 1 216 ALA n 1 217 GLU n 1 218 GLY n 1 219 SER n 1 220 PHE n 1 221 ASP n 1 222 GLY n 1 223 SER n 1 224 MET n 1 225 PHE n 1 226 SER n 1 227 GLY n 1 228 VAL n 1 229 PRO n 1 230 LEU n 1 231 LEU n 1 232 ARG n 1 233 ALA n 1 234 GLY n 1 235 PHE n 1 236 ASN n 1 237 SER n 1 238 LEU n 1 239 ILE n 1 240 ASP n 1 241 CYS n 1 242 ALA n 1 243 LYS n 1 244 VAL n 1 245 SER n 1 246 GLY n 1 247 SER n 1 248 SER n 1 249 ALA n 1 250 GLU n 1 251 GLY n 1 252 LEU n 1 253 LEU n 1 254 LYS n 1 255 ASN n 1 256 SER n 1 257 SER n 1 258 ARG n 1 259 GLN n 1 260 LEU n 1 261 ASN n 1 262 VAL n 1 263 SER n 1 264 PHE n 1 265 ASN n 1 266 LYS n 1 267 ASP n 1 268 ASN n 1 269 VAL n 1 270 SER n 1 271 ALA n 1 272 GLN n 1 273 SER n 1 274 LEU n 1 275 ALA n 1 276 GLN n 1 277 GLN n 1 278 MET n 1 279 GLN n 1 280 VAL n 1 281 PRO n 1 282 VAL n 1 283 ASP n 1 284 GLU n 1 285 LEU n 1 286 ALA n 1 287 ASP n 1 288 LEU n 1 289 LEU n 1 290 ASN n 1 291 GLU n 1 292 ASN n 1 293 ILE n 1 294 GLU n 1 295 MET n 1 296 LEU n 1 297 ASN n 1 298 SER n 1 299 GLY n 1 300 ILE n 1 301 ASP n 1 302 ALA n 1 303 ALA n 1 304 MET n 1 305 PHE n 1 306 SER n 1 307 PHE n 1 308 GLY n 1 309 SER n 1 310 ASP n 1 311 VAL n 1 312 SER n 1 313 VAL n 1 314 LEU n 1 315 SER n 1 316 THR n 1 317 SER n 1 318 MET n 1 319 SER n 1 320 ASP n 1 321 PRO n 1 322 GLU n 1 323 PRO n 1 324 PHE n 1 325 MET n 1 326 TYR n 1 327 VAL n 1 328 ALA n 1 329 ALA n 1 330 SER n 1 331 GLN n 1 332 PHE n 1 333 ALA n 1 334 ALA n 1 335 SER n 1 336 VAL n 1 337 ASN n 1 338 ILE n 1 339 PRO n 1 340 LEU n 1 341 ASN n 1 342 SER n 1 343 LEU n 1 344 LEU n 1 345 GLY n 1 346 SER n 1 347 ARG n 1 348 SER n 1 349 GLY n 1 350 VAL n 1 351 LEU n 1 352 ALA n 1 353 SER n 1 354 ALA n 1 355 ASN n 1 356 ASP n 1 357 GLU n 1 358 GLN n 1 359 SER n 1 360 LEU n 1 361 ALA n 1 362 MET n 1 363 MET n 1 364 ALA n 1 365 MET n 1 366 GLN n 1 367 ARG n 1 368 ARG n 1 369 ASP n 1 370 GLY n 1 371 TRP n 1 372 LEU n 1 373 ASP n 1 374 TYR n 1 375 LEU n 1 376 VAL n 1 377 GLY n 1 378 SER n 1 379 PHE n 1 380 VAL n 1 381 GLU n 1 382 ARG n 1 383 LEU n 1 384 ILE n 1 385 THR n 1 386 PHE n 1 387 GLY n 1 388 ILE n 1 389 VAL n 1 390 ASP n 1 391 LYS n 1 392 ALA n 1 393 PRO n 1 394 ALA n 1 395 ALA n 1 396 GLY n 1 397 TYR n 1 398 TYR n 1 399 CYS n 1 400 LYS n 1 401 TRP n 1 402 ASN n 1 403 ASP n 1 404 LEU n 1 405 LEU n 1 406 GLU n 1 407 PRO n 1 408 THR n 1 409 GLN n 1 410 ASN n 1 411 ASP n 1 412 LYS n 1 413 ALA n 1 414 GLU n 1 415 LEU n 1 416 ILE n 1 417 VAL n 1 418 LYS n 1 419 LEU n 1 420 ALA n 1 421 GLN n 1 422 ALA n 1 423 ALA n 1 424 GLN n 1 425 SER n 1 426 ALA n 1 427 ALA n 1 428 ASN n 1 429 ALA n 1 430 GLY n 1 431 VAL n 1 432 GLY n 1 433 GLN n 1 434 ILE n 1 435 LEU n 1 436 THR n 1 437 ASP n 1 438 ASP n 1 439 GLU n 1 440 ILE n 1 441 ARG n 1 442 GLY n 1 443 PHE n 1 444 LEU n 1 445 GLY n 1 446 LEU n 1 447 GLU n 1 448 PRO n 1 449 ILE n 1 450 GLU n 1 451 MET n 1 452 PRO n 1 453 ASP n 1 454 GLY n 1 455 TYR n 1 456 MET n 1 457 GLU n 1 458 ASP n 1 459 THR n 1 460 PRO n 1 461 PRO n 1 462 GLU n 1 463 GLY n 1 464 GLU n 1 465 ASP n 1 466 GLU n 1 467 ASP n 1 468 THR n 1 469 PRO n 1 470 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 470 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Sf11_gp63 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Shigella phage Sf11 SMD-2017' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2282196 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Shigella flexneri Y' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 424720 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 SER 2 2 ? ? ? A . n A 1 3 LYS 3 3 ? ? ? A . n A 1 4 ILE 4 4 ? ? ? A . n A 1 5 ASP 5 5 ? ? ? A . n A 1 6 ALA 6 6 ? ? ? A . n A 1 7 LEU 7 7 ? ? ? A . n A 1 8 ASN 8 8 ? ? ? A . n A 1 9 ALA 9 9 ? ? ? A . n A 1 10 TYR 10 10 ? ? ? A . n A 1 11 ILE 11 11 ? ? ? A . n A 1 12 ARG 12 12 ? ? ? A . n A 1 13 ASP 13 13 ? ? ? A . n A 1 14 ARG 14 14 ? ? ? A . n A 1 15 VAL 15 15 ? ? ? A . n A 1 16 ALA 16 16 ? ? ? A . n A 1 17 ASN 17 17 ? ? ? A . n A 1 18 ASN 18 18 ? ? ? A . n A 1 19 ASN 19 19 ? ? ? A . n A 1 20 ARG 20 20 ? ? ? A . n A 1 21 ALA 21 21 ? ? ? A . n A 1 22 ILE 22 22 ? ? ? A . n A 1 23 GLN 23 23 ? ? ? A . n A 1 24 GLN 24 24 ? ? ? A . n A 1 25 GLN 25 25 ? ? ? A . n A 1 26 ARG 26 26 ? ? ? A . n A 1 27 LEU 27 27 ? ? ? A . n A 1 28 CYS 28 28 ? ? ? A . n A 1 29 ALA 29 29 29 ALA ALA A . n A 1 30 GLY 30 30 30 GLY GLY A . n A 1 31 GLY 31 31 31 GLY GLY A . n A 1 32 LYS 32 32 32 LYS LYS A . n A 1 33 ASN 33 33 33 ASN ASN A . n A 1 34 LEU 34 34 34 LEU LEU A . n A 1 35 ASP 35 35 35 ASP ASP A . n A 1 36 GLN 36 36 36 GLN GLN A . n A 1 37 LYS 37 37 37 LYS LYS A . n A 1 38 HIS 38 38 38 HIS HIS A . n A 1 39 ASP 39 39 39 ASP ASP A . n A 1 40 ARG 40 40 40 ARG ARG A . n A 1 41 LEU 41 41 41 LEU LEU A . n A 1 42 TRP 42 42 42 TRP TRP A . n A 1 43 THR 43 43 43 THR THR A . n A 1 44 GLU 44 44 44 GLU GLU A . n A 1 45 CYS 45 45 45 CYS CYS A . n A 1 46 GLY 46 46 46 GLY GLY A . n A 1 47 TYR 47 47 47 TYR TYR A . n A 1 48 LYS 48 48 48 LYS LYS A . n A 1 49 GLN 49 49 49 GLN GLN A . n A 1 50 GLU 50 50 50 GLU GLU A . n A 1 51 ILE 51 51 51 ILE ILE A . n A 1 52 ASN 52 52 52 ASN ASN A . n A 1 53 ALA 53 53 53 ALA ALA A . n A 1 54 GLU 54 54 54 GLU GLU A . n A 1 55 ASP 55 55 55 ASP ASP A . n A 1 56 PHE 56 56 56 PHE PHE A . n A 1 57 ARG 57 57 57 ARG ARG A . n A 1 58 PHE 58 58 58 PHE PHE A . n A 1 59 ALA 59 59 59 ALA ALA A . n A 1 60 TYR 60 60 60 TYR TYR A . n A 1 61 GLU 61 61 61 GLU GLU A . n A 1 62 ARG 62 62 62 ARG ARG A . n A 1 63 TYR 63 63 63 TYR TYR A . n A 1 64 PRO 64 64 64 PRO PRO A . n A 1 65 LEU 65 65 65 LEU LEU A . n A 1 66 ALA 66 66 66 ALA ALA A . n A 1 67 ASN 67 67 67 ASN ASN A . n A 1 68 ALA 68 68 68 ALA ALA A . n A 1 69 ALA 69 69 69 ALA ALA A . n A 1 70 VAL 70 70 70 VAL VAL A . n A 1 71 ASN 71 71 71 ASN ASN A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 VAL 73 73 73 VAL VAL A . n A 1 74 LEU 74 74 74 LEU LEU A . n A 1 75 ASN 75 75 75 ASN ASN A . n A 1 76 LYS 76 76 76 LYS LYS A . n A 1 77 SER 77 77 77 SER SER A . n A 1 78 TRP 78 78 78 TRP TRP A . n A 1 79 HIS 79 79 79 HIS HIS A . n A 1 80 GLY 80 80 80 GLY GLY A . n A 1 81 MET 81 81 81 MET MET A . n A 1 82 PRO 82 82 82 PRO PRO A . n A 1 83 THR 83 83 83 THR THR A . n A 1 84 VAL 84 84 84 VAL VAL A . n A 1 85 LEU 85 85 85 LEU LEU A . n A 1 86 GLU 86 86 86 GLU GLU A . n A 1 87 ASN 87 87 87 ASN ASN A . n A 1 88 ASP 88 88 88 ASP ASP A . n A 1 89 ALA 89 89 89 ALA ALA A . n A 1 90 ASP 90 90 90 ASP ASP A . n A 1 91 ASP 91 91 91 ASP ASP A . n A 1 92 GLU 92 92 92 GLU GLU A . n A 1 93 ALA 93 93 93 ALA ALA A . n A 1 94 THR 94 94 94 THR THR A . n A 1 95 SER 95 95 95 SER SER A . n A 1 96 PRO 96 96 96 PRO PRO A . n A 1 97 TRP 97 97 97 TRP TRP A . n A 1 98 GLU 98 98 98 GLU GLU A . n A 1 99 LYS 99 99 99 LYS LYS A . n A 1 100 SER 100 100 100 SER SER A . n A 1 101 VAL 101 101 101 VAL VAL A . n A 1 102 ASN 102 102 102 ASN ASN A . n A 1 103 ASP 103 103 103 ASP ASP A . n A 1 104 ILE 104 104 104 ILE ILE A . n A 1 105 LEU 105 105 105 LEU LEU A . n A 1 106 LYS 106 106 106 LYS LYS A . n A 1 107 LYS 107 107 107 LYS LYS A . n A 1 108 ALA 108 108 108 ALA ALA A . n A 1 109 LEU 109 109 109 LEU LEU A . n A 1 110 PRO 110 110 110 PRO PRO A . n A 1 111 PHE 111 111 111 PHE PHE A . n A 1 112 ILE 112 112 112 ILE ILE A . n A 1 113 ARG 113 113 113 ARG ARG A . n A 1 114 ASP 114 114 114 ASP ASP A . n A 1 115 ALA 115 115 115 ALA ALA A . n A 1 116 ASP 116 116 116 ASP ASP A . n A 1 117 LYS 117 117 117 LYS LYS A . n A 1 118 ARG 118 118 118 ARG ARG A . n A 1 119 ASN 119 119 119 ASN ASN A . n A 1 120 LEU 120 120 120 LEU LEU A . n A 1 121 ILE 121 121 121 ILE ILE A . n A 1 122 ASN 122 122 122 ASN ASN A . n A 1 123 ARG 123 123 123 ARG ARG A . n A 1 124 TYR 124 124 124 TYR TYR A . n A 1 125 SER 125 125 125 SER SER A . n A 1 126 ALA 126 126 126 ALA ALA A . n A 1 127 LEU 127 127 127 LEU LEU A . n A 1 128 ILE 128 128 128 ILE ILE A . n A 1 129 LEU 129 129 129 LEU LEU A . n A 1 130 GLN 130 130 130 GLN GLN A . n A 1 131 ILE 131 131 131 ILE ILE A . n A 1 132 ARG 132 132 132 ARG ARG A . n A 1 133 ASP 133 133 133 ASP ASP A . n A 1 134 GLY 134 134 134 GLY GLY A . n A 1 135 LYS 135 135 135 LYS LYS A . n A 1 136 GLN 136 136 136 GLN GLN A . n A 1 137 TRP 137 137 137 TRP TRP A . n A 1 138 SER 138 138 138 SER SER A . n A 1 139 GLU 139 139 139 GLU GLU A . n A 1 140 PRO 140 140 140 PRO PRO A . n A 1 141 VAL 141 141 141 VAL VAL A . n A 1 142 ASP 142 142 142 ASP ASP A . n A 1 143 ILE 143 143 143 ILE ILE A . n A 1 144 THR 144 144 144 THR THR A . n A 1 145 LYS 145 145 145 LYS LYS A . n A 1 146 THR 146 146 146 THR THR A . n A 1 147 ARG 147 147 147 ARG ARG A . n A 1 148 ARG 148 148 148 ARG ARG A . n A 1 149 ILE 149 149 149 ILE ILE A . n A 1 150 LYS 150 150 150 LYS LYS A . n A 1 151 ASP 151 151 151 ASP ASP A . n A 1 152 LYS 152 152 152 LYS LYS A . n A 1 153 SER 153 153 153 SER SER A . n A 1 154 ILE 154 154 154 ILE ILE A . n A 1 155 VAL 155 155 155 VAL VAL A . n A 1 156 ARG 156 156 156 ARG ARG A . n A 1 157 PHE 157 157 157 PHE PHE A . n A 1 158 ILE 158 158 158 ILE ILE A . n A 1 159 PRO 159 159 159 PRO PRO A . n A 1 160 VAL 160 160 160 VAL VAL A . n A 1 161 TRP 161 161 161 TRP TRP A . n A 1 162 GLU 162 162 162 GLU GLU A . n A 1 163 GLU 163 163 163 GLU GLU A . n A 1 164 GLN 164 164 164 GLN GLN A . n A 1 165 LEU 165 165 165 LEU LEU A . n A 1 166 ARG 166 166 166 ARG ARG A . n A 1 167 VAL 167 167 167 VAL VAL A . n A 1 168 SER 168 168 168 SER SER A . n A 1 169 ALA 169 169 169 ALA ALA A . n A 1 170 TRP 170 170 170 TRP TRP A . n A 1 171 ASN 171 171 171 ASN ASN A . n A 1 172 ASN 172 172 172 ASN ASN A . n A 1 173 ASP 173 173 173 ASP ASP A . n A 1 174 GLU 174 174 174 GLU GLU A . n A 1 175 THR 175 175 175 THR THR A . n A 1 176 SER 176 176 176 SER SER A . n A 1 177 GLU 177 177 177 GLU GLU A . n A 1 178 ASP 178 178 178 ASP ASP A . n A 1 179 TYR 179 179 179 TYR TYR A . n A 1 180 GLY 180 180 180 GLY GLY A . n A 1 181 MET 181 181 181 MET MET A . n A 1 182 PRO 182 182 182 PRO PRO A . n A 1 183 GLU 183 183 183 GLU GLU A . n A 1 184 MET 184 184 184 MET MET A . n A 1 185 TYR 185 185 185 TYR TYR A . n A 1 186 GLU 186 186 186 GLU ALA A . n A 1 187 TYR 187 187 187 TYR TYR A . n A 1 188 GLN 188 188 188 GLN GLN A . n A 1 189 GLU 189 189 189 GLU GLU A . n A 1 190 SER 190 190 190 SER SER A . n A 1 191 ALA 191 191 191 ALA ALA A . n A 1 192 VAL 192 192 192 VAL VAL A . n A 1 193 GLU 193 193 193 GLU GLU A . n A 1 194 ASP 194 194 194 ASP ASP A . n A 1 195 PHE 195 195 195 PHE PHE A . n A 1 196 ASP 196 196 196 ASP ASP A . n A 1 197 SER 197 197 197 SER SER A . n A 1 198 ASP 198 198 198 ASP ASP A . n A 1 199 GLY 199 199 199 GLY GLY A . n A 1 200 LYS 200 200 200 LYS LYS A . n A 1 201 PRO 201 201 201 PRO PRO A . n A 1 202 GLU 202 202 202 GLU GLU A . n A 1 203 ARG 203 203 203 ARG ARG A . n A 1 204 SER 204 204 204 SER SER A . n A 1 205 VAL 205 205 205 VAL VAL A . n A 1 206 GLN 206 206 206 GLN GLN A . n A 1 207 ILE 207 207 207 ILE ILE A . n A 1 208 HIS 208 208 208 HIS HIS A . n A 1 209 PRO 209 209 209 PRO PRO A . n A 1 210 ASP 210 210 210 ASP ASP A . n A 1 211 ARG 211 211 211 ARG ARG A . n A 1 212 ILE 212 212 212 ILE ILE A . n A 1 213 ILE 213 213 213 ILE ILE A . n A 1 214 ILE 214 214 214 ILE ILE A . n A 1 215 LEU 215 215 215 LEU LEU A . n A 1 216 ALA 216 216 216 ALA ALA A . n A 1 217 GLU 217 217 217 GLU GLU A . n A 1 218 GLY 218 218 218 GLY GLY A . n A 1 219 SER 219 219 219 SER SER A . n A 1 220 PHE 220 220 220 PHE PHE A . n A 1 221 ASP 221 221 221 ASP ASP A . n A 1 222 GLY 222 222 222 GLY GLY A . n A 1 223 SER 223 223 223 SER SER A . n A 1 224 MET 224 224 224 MET MET A . n A 1 225 PHE 225 225 225 PHE PHE A . n A 1 226 SER 226 226 226 SER SER A . n A 1 227 GLY 227 227 227 GLY GLY A . n A 1 228 VAL 228 228 228 VAL VAL A . n A 1 229 PRO 229 229 229 PRO PRO A . n A 1 230 LEU 230 230 230 LEU LEU A . n A 1 231 LEU 231 231 231 LEU LEU A . n A 1 232 ARG 232 232 232 ARG ARG A . n A 1 233 ALA 233 233 233 ALA ALA A . n A 1 234 GLY 234 234 234 GLY GLY A . n A 1 235 PHE 235 235 235 PHE PHE A . n A 1 236 ASN 236 236 236 ASN ASN A . n A 1 237 SER 237 237 237 SER SER A . n A 1 238 LEU 238 238 238 LEU LEU A . n A 1 239 ILE 239 239 239 ILE ILE A . n A 1 240 ASP 240 240 240 ASP ASP A . n A 1 241 CYS 241 241 241 CYS CYS A . n A 1 242 ALA 242 242 242 ALA ALA A . n A 1 243 LYS 243 243 243 LYS LYS A . n A 1 244 VAL 244 244 244 VAL VAL A . n A 1 245 SER 245 245 245 SER SER A . n A 1 246 GLY 246 246 246 GLY GLY A . n A 1 247 SER 247 247 247 SER SER A . n A 1 248 SER 248 248 248 SER SER A . n A 1 249 ALA 249 249 249 ALA ALA A . n A 1 250 GLU 250 250 250 GLU GLU A . n A 1 251 GLY 251 251 251 GLY GLY A . n A 1 252 LEU 252 252 252 LEU LEU A . n A 1 253 LEU 253 253 253 LEU LEU A . n A 1 254 LYS 254 254 254 LYS LYS A . n A 1 255 ASN 255 255 255 ASN ASN A . n A 1 256 SER 256 256 256 SER SER A . n A 1 257 SER 257 257 257 SER SER A . n A 1 258 ARG 258 258 258 ARG ARG A . n A 1 259 GLN 259 259 259 GLN GLN A . n A 1 260 LEU 260 260 260 LEU LEU A . n A 1 261 ASN 261 261 261 ASN ASN A . n A 1 262 VAL 262 262 262 VAL VAL A . n A 1 263 SER 263 263 263 SER SER A . n A 1 264 PHE 264 264 264 PHE PHE A . n A 1 265 ASN 265 265 265 ASN ASN A . n A 1 266 LYS 266 266 266 LYS LYS A . n A 1 267 ASP 267 267 267 ASP ASP A . n A 1 268 ASN 268 268 268 ASN ASN A . n A 1 269 VAL 269 269 269 VAL VAL A . n A 1 270 SER 270 270 270 SER SER A . n A 1 271 ALA 271 271 271 ALA ALA A . n A 1 272 GLN 272 272 272 GLN GLN A . n A 1 273 SER 273 273 273 SER SER A . n A 1 274 LEU 274 274 274 LEU LEU A . n A 1 275 ALA 275 275 275 ALA ALA A . n A 1 276 GLN 276 276 276 GLN GLN A . n A 1 277 GLN 277 277 277 GLN GLN A . n A 1 278 MET 278 278 278 MET MET A . n A 1 279 GLN 279 279 279 GLN GLN A . n A 1 280 VAL 280 280 280 VAL VAL A . n A 1 281 PRO 281 281 281 PRO PRO A . n A 1 282 VAL 282 282 282 VAL VAL A . n A 1 283 ASP 283 283 283 ASP ASP A . n A 1 284 GLU 284 284 284 GLU GLU A . n A 1 285 LEU 285 285 285 LEU LEU A . n A 1 286 ALA 286 286 286 ALA ALA A . n A 1 287 ASP 287 287 287 ASP ASP A . n A 1 288 LEU 288 288 288 LEU LEU A . n A 1 289 LEU 289 289 289 LEU LEU A . n A 1 290 ASN 290 290 290 ASN ASN A . n A 1 291 GLU 291 291 291 GLU GLU A . n A 1 292 ASN 292 292 292 ASN ASN A . n A 1 293 ILE 293 293 293 ILE ILE A . n A 1 294 GLU 294 294 294 GLU GLU A . n A 1 295 MET 295 295 295 MET MET A . n A 1 296 LEU 296 296 296 LEU LEU A . n A 1 297 ASN 297 297 297 ASN ASN A . n A 1 298 SER 298 298 298 SER SER A . n A 1 299 GLY 299 299 299 GLY GLY A . n A 1 300 ILE 300 300 300 ILE ILE A . n A 1 301 ASP 301 301 301 ASP ASP A . n A 1 302 ALA 302 302 302 ALA ALA A . n A 1 303 ALA 303 303 303 ALA ALA A . n A 1 304 MET 304 304 304 MET MET A . n A 1 305 PHE 305 305 305 PHE PHE A . n A 1 306 SER 306 306 306 SER SER A . n A 1 307 PHE 307 307 307 PHE PHE A . n A 1 308 GLY 308 308 308 GLY GLY A . n A 1 309 SER 309 309 309 SER SER A . n A 1 310 ASP 310 310 310 ASP ASP A . n A 1 311 VAL 311 311 311 VAL VAL A . n A 1 312 SER 312 312 312 SER SER A . n A 1 313 VAL 313 313 313 VAL VAL A . n A 1 314 LEU 314 314 314 LEU LEU A . n A 1 315 SER 315 315 315 SER SER A . n A 1 316 THR 316 316 316 THR THR A . n A 1 317 SER 317 317 317 SER SER A . n A 1 318 MET 318 318 318 MET MET A . n A 1 319 SER 319 319 319 SER SER A . n A 1 320 ASP 320 320 320 ASP ASP A . n A 1 321 PRO 321 321 321 PRO PRO A . n A 1 322 GLU 322 322 322 GLU GLU A . n A 1 323 PRO 323 323 323 PRO PRO A . n A 1 324 PHE 324 324 324 PHE PHE A . n A 1 325 MET 325 325 325 MET MET A . n A 1 326 TYR 326 326 326 TYR TYR A . n A 1 327 VAL 327 327 327 VAL VAL A . n A 1 328 ALA 328 328 328 ALA ALA A . n A 1 329 ALA 329 329 329 ALA ALA A . n A 1 330 SER 330 330 330 SER SER A . n A 1 331 GLN 331 331 331 GLN GLN A . n A 1 332 PHE 332 332 332 PHE PHE A . n A 1 333 ALA 333 333 333 ALA ALA A . n A 1 334 ALA 334 334 334 ALA ALA A . n A 1 335 SER 335 335 335 SER SER A . n A 1 336 VAL 336 336 336 VAL VAL A . n A 1 337 ASN 337 337 337 ASN ASN A . n A 1 338 ILE 338 338 338 ILE ILE A . n A 1 339 PRO 339 339 339 PRO PRO A . n A 1 340 LEU 340 340 340 LEU LEU A . n A 1 341 ASN 341 341 341 ASN ASN A . n A 1 342 SER 342 342 342 SER SER A . n A 1 343 LEU 343 343 343 LEU LEU A . n A 1 344 LEU 344 344 344 LEU LEU A . n A 1 345 GLY 345 345 345 GLY GLY A . n A 1 346 SER 346 346 346 SER ALA A . n A 1 347 ARG 347 347 347 ARG ALA A . n A 1 348 SER 348 348 348 SER ALA A . n A 1 349 GLY 349 349 349 GLY GLY A . n A 1 350 VAL 350 350 350 VAL ALA A . n A 1 351 LEU 351 351 351 LEU ALA A . n A 1 352 ALA 352 352 352 ALA ALA A . n A 1 353 SER 353 353 353 SER ALA A . n A 1 354 ALA 354 354 354 ALA ALA A . n A 1 355 ASN 355 355 355 ASN ALA A . n A 1 356 ASP 356 356 356 ASP ASP A . n A 1 357 GLU 357 357 357 GLU ALA A . n A 1 358 GLN 358 358 358 GLN GLN A . n A 1 359 SER 359 359 359 SER SER A . n A 1 360 LEU 360 360 360 LEU LEU A . n A 1 361 ALA 361 361 361 ALA ALA A . n A 1 362 MET 362 362 362 MET MET A . n A 1 363 MET 363 363 363 MET MET A . n A 1 364 ALA 364 364 364 ALA ALA A . n A 1 365 MET 365 365 365 MET MET A . n A 1 366 GLN 366 366 366 GLN GLN A . n A 1 367 ARG 367 367 367 ARG ARG A . n A 1 368 ARG 368 368 368 ARG ARG A . n A 1 369 ASP 369 369 369 ASP ASP A . n A 1 370 GLY 370 370 370 GLY GLY A . n A 1 371 TRP 371 371 371 TRP TRP A . n A 1 372 LEU 372 372 372 LEU LEU A . n A 1 373 ASP 373 373 373 ASP ASP A . n A 1 374 TYR 374 374 374 TYR TYR A . n A 1 375 LEU 375 375 375 LEU LEU A . n A 1 376 VAL 376 376 376 VAL VAL A . n A 1 377 GLY 377 377 377 GLY GLY A . n A 1 378 SER 378 378 378 SER SER A . n A 1 379 PHE 379 379 379 PHE PHE A . n A 1 380 VAL 380 380 380 VAL VAL A . n A 1 381 GLU 381 381 381 GLU GLU A . n A 1 382 ARG 382 382 382 ARG ARG A . n A 1 383 LEU 383 383 383 LEU LEU A . n A 1 384 ILE 384 384 384 ILE ILE A . n A 1 385 THR 385 385 385 THR THR A . n A 1 386 PHE 386 386 386 PHE PHE A . n A 1 387 GLY 387 387 387 GLY GLY A . n A 1 388 ILE 388 388 388 ILE ILE A . n A 1 389 VAL 389 389 389 VAL VAL A . n A 1 390 ASP 390 390 390 ASP ASP A . n A 1 391 LYS 391 391 391 LYS LYS A . n A 1 392 ALA 392 392 392 ALA ALA A . n A 1 393 PRO 393 393 393 PRO PRO A . n A 1 394 ALA 394 394 394 ALA ALA A . n A 1 395 ALA 395 395 395 ALA ALA A . n A 1 396 GLY 396 396 396 GLY GLY A . n A 1 397 TYR 397 397 397 TYR TYR A . n A 1 398 TYR 398 398 398 TYR TYR A . n A 1 399 CYS 399 399 399 CYS CYS A . n A 1 400 LYS 400 400 400 LYS LYS A . n A 1 401 TRP 401 401 401 TRP TRP A . n A 1 402 ASN 402 402 402 ASN ASN A . n A 1 403 ASP 403 403 403 ASP ASP A . n A 1 404 LEU 404 404 404 LEU LEU A . n A 1 405 LEU 405 405 405 LEU LEU A . n A 1 406 GLU 406 406 406 GLU ALA A . n A 1 407 PRO 407 407 407 PRO PRO A . n A 1 408 THR 408 408 408 THR ALA A . n A 1 409 GLN 409 409 409 GLN ALA A . n A 1 410 ASN 410 410 410 ASN ALA A . n A 1 411 ASP 411 411 ? ? ? A . n A 1 412 LYS 412 412 ? ? ? A . n A 1 413 ALA 413 413 ? ? ? A . n A 1 414 GLU 414 414 ? ? ? A . n A 1 415 LEU 415 415 ? ? ? A . n A 1 416 ILE 416 416 ? ? ? A . n A 1 417 VAL 417 417 ? ? ? A . n A 1 418 LYS 418 418 ? ? ? A . n A 1 419 LEU 419 419 ? ? ? A . n A 1 420 ALA 420 420 ? ? ? A . n A 1 421 GLN 421 421 ? ? ? A . n A 1 422 ALA 422 422 ? ? ? A . n A 1 423 ALA 423 423 ? ? ? A . n A 1 424 GLN 424 424 ? ? ? A . n A 1 425 SER 425 425 ? ? ? A . n A 1 426 ALA 426 426 ? ? ? A . n A 1 427 ALA 427 427 ? ? ? A . n A 1 428 ASN 428 428 ? ? ? A . n A 1 429 ALA 429 429 ? ? ? A . n A 1 430 GLY 430 430 ? ? ? A . n A 1 431 VAL 431 431 ? ? ? A . n A 1 432 GLY 432 432 ? ? ? A . n A 1 433 GLN 433 433 ? ? ? A . n A 1 434 ILE 434 434 ? ? ? A . n A 1 435 LEU 435 435 ? ? ? A . n A 1 436 THR 436 436 ? ? ? A . n A 1 437 ASP 437 437 ? ? ? A . n A 1 438 ASP 438 438 ? ? ? A . n A 1 439 GLU 439 439 ? ? ? A . n A 1 440 ILE 440 440 ? ? ? A . n A 1 441 ARG 441 441 ? ? ? A . n A 1 442 GLY 442 442 ? ? ? A . n A 1 443 PHE 443 443 ? ? ? A . n A 1 444 LEU 444 444 ? ? ? A . n A 1 445 GLY 445 445 ? ? ? A . n A 1 446 LEU 446 446 ? ? ? A . n A 1 447 GLU 447 447 ? ? ? A . n A 1 448 PRO 448 448 ? ? ? A . n A 1 449 ILE 449 449 ? ? ? A . n A 1 450 GLU 450 450 ? ? ? A . n A 1 451 MET 451 451 ? ? ? A . n A 1 452 PRO 452 452 ? ? ? A . n A 1 453 ASP 453 453 ? ? ? A . n A 1 454 GLY 454 454 ? ? ? A . n A 1 455 TYR 455 455 ? ? ? A . n A 1 456 MET 456 456 ? ? ? A . n A 1 457 GLU 457 457 ? ? ? A . n A 1 458 ASP 458 458 ? ? ? A . n A 1 459 THR 459 459 ? ? ? A . n A 1 460 PRO 460 460 ? ? ? A . n A 1 461 PRO 461 461 ? ? ? A . n A 1 462 GLU 462 462 ? ? ? A . n A 1 463 GLY 463 463 ? ? ? A . n A 1 464 GLU 464 464 ? ? ? A . n A 1 465 ASP 465 465 ? ? ? A . n A 1 466 GLU 466 466 ? ? ? A . n A 1 467 ASP 467 467 ? ? ? A . n A 1 468 THR 468 468 ? ? ? A . n A 1 469 PRO 469 469 ? ? ? A . n A 1 470 VAL 470 470 ? ? ? A . n # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 186 ? CG ? A GLU 186 CG 2 1 Y 1 A GLU 186 ? CD ? A GLU 186 CD 3 1 Y 1 A GLU 186 ? OE1 ? A GLU 186 OE1 4 1 Y 1 A GLU 186 ? OE2 ? A GLU 186 OE2 5 1 Y 1 A SER 346 ? OG ? A SER 346 OG 6 1 Y 1 A ARG 347 ? CG ? A ARG 347 CG 7 1 Y 1 A ARG 347 ? CD ? A ARG 347 CD 8 1 Y 1 A ARG 347 ? NE ? A ARG 347 NE 9 1 Y 1 A ARG 347 ? CZ ? A ARG 347 CZ 10 1 Y 1 A ARG 347 ? NH1 ? A ARG 347 NH1 11 1 Y 1 A ARG 347 ? NH2 ? A ARG 347 NH2 12 1 Y 1 A SER 348 ? OG ? A SER 348 OG 13 1 Y 1 A VAL 350 ? CG1 ? A VAL 350 CG1 14 1 Y 1 A VAL 350 ? CG2 ? A VAL 350 CG2 15 1 Y 1 A LEU 351 ? CG ? A LEU 351 CG 16 1 Y 1 A LEU 351 ? CD1 ? A LEU 351 CD1 17 1 Y 1 A LEU 351 ? CD2 ? A LEU 351 CD2 18 1 Y 1 A SER 353 ? OG ? A SER 353 OG 19 1 Y 1 A ASN 355 ? CG ? A ASN 355 CG 20 1 Y 1 A ASN 355 ? OD1 ? A ASN 355 OD1 21 1 Y 1 A ASN 355 ? ND2 ? A ASN 355 ND2 22 1 Y 1 A GLU 357 ? CG ? A GLU 357 CG 23 1 Y 1 A GLU 357 ? CD ? A GLU 357 CD 24 1 Y 1 A GLU 357 ? OE1 ? A GLU 357 OE1 25 1 Y 1 A GLU 357 ? OE2 ? A GLU 357 OE2 26 1 Y 1 A GLU 406 ? CG ? A GLU 406 CG 27 1 Y 1 A GLU 406 ? CD ? A GLU 406 CD 28 1 Y 1 A GLU 406 ? OE1 ? A GLU 406 OE1 29 1 Y 1 A GLU 406 ? OE2 ? A GLU 406 OE2 30 1 Y 1 A THR 408 ? OG1 ? A THR 408 OG1 31 1 Y 1 A THR 408 ? CG2 ? A THR 408 CG2 32 1 Y 1 A GLN 409 ? CG ? A GLN 409 CG 33 1 Y 1 A GLN 409 ? CD ? A GLN 409 CD 34 1 Y 1 A GLN 409 ? OE1 ? A GLN 409 OE1 35 1 Y 1 A GLN 409 ? NE2 ? A GLN 409 NE2 36 1 Y 1 A ASN 410 ? CG ? A ASN 410 CG 37 1 Y 1 A ASN 410 ? OD1 ? A ASN 410 OD1 38 1 Y 1 A ASN 410 ? ND2 ? A ASN 410 ND2 # _software.classification refinement _software.name PHENIX _software.version 1.20.1_4487 _software.citation_id ? _software.pdbx_ordinal 1 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9YIN _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9YIN _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9YIN _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 9YIN _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 2.40 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'REAL-SPACE (WEIGHTED MAP SUM AT ATOM CENTERS)' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.003 ? ? 3069 'ELECTRON MICROSCOPY' ? f_angle_d 0.511 ? ? 4163 'ELECTRON MICROSCOPY' ? f_dihedral_angle_d 4.250 ? ? 419 'ELECTRON MICROSCOPY' ? f_chiral_restr 0.040 ? ? 455 'ELECTRON MICROSCOPY' ? f_plane_restr 0.004 ? ? 552 'ELECTRON MICROSCOPY' ? # _struct.entry_id 9YIN _struct.title 'Sf11 bacteriophage portal' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9YIN _struct_keywords.text 'Sf11, bacteriophage, VIRUS' _struct_keywords.pdbx_keywords VIRUS # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A0A291AXK9_9CAUD _struct_ref.pdbx_db_accession A0A291AXK9 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MSKIDALNAYIRDRVANNNRAIQQQRLCAGGKNLDQKHDRLWTECGYKQEINAEDFRFAYERYPLANAAVNIVLNKSWHG MPTVLENDADDEATSPWEKSVNDILKKALPFIRDADKRNLINRYSALILQIRDGKQWSEPVDITKTRRIKDKSIVRFIPV WEEQLRVSAWNNDETSEDYGMPEMYEYQESAVEDFDSDGKPERSVQIHPDRIIILAEGSFDGSMFSGVPLLRAGFNSLID CAKVSGSSAEGLLKNSSRQLNVSFNKDNVSAQSLAQQMQVPVDELADLLNENIEMLNSGIDAAMFSFGSDVSVLSTSMSD PEPFMYVAASQFAASVNIPLNSLLGSRSGVLASANDEQSLAMMAMQRRDGWLDYLVGSFVERLITFGIVDKAPAAGYYCK WNDLLEPTQNDKAELIVKLAQAAQSAANAGVGQILTDDEIRGFLGLEPIEMPDGYMEDTPPEGEDEDTPV ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 9YIN _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 470 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A0A291AXK9 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 470 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 470 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'complete point assembly' ? dodecameric 12 2 'point asymmetric unit' ? monomeric 1 3 'point asymmetric unit, std point frame' ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-12)' A 2 1 A 3 P A # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? -0.80697833 0.59058105 0.00000000 36.03015 -0.59058105 -0.80697833 0.00000000 232.69364 0.00000000 0.00000000 1.00000000 -186.15953 1 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 2 'point symmetry operation' ? ? 0.86602540 -0.50000000 0.00000000 105.55677 0.50000000 0.86602540 0.00000000 -60.94323 0.00000000 0.00000000 1.00000000 0.00000 3 'point symmetry operation' ? ? 0.50000000 -0.86602540 0.00000000 227.44323 0.86602540 0.50000000 0.00000000 -60.94323 0.00000000 0.00000000 1.00000000 0.00000 4 'point symmetry operation' ? ? 0.00000000 -1.00000000 0.00000000 333.00001 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 5 'point symmetry operation' ? ? -0.50000000 -0.86602540 0.00000000 393.94324 0.86602540 -0.50000000 0.00000000 105.55677 0.00000000 0.00000000 1.00000000 0.00000 6 'point symmetry operation' ? ? -0.86602540 -0.50000000 0.00000000 393.94324 0.50000000 -0.86602540 0.00000000 227.44323 0.00000000 0.00000000 1.00000000 0.00000 7 'point symmetry operation' ? ? -1.00000000 0.00000000 0.00000000 333.00001 0.00000000 -1.00000000 0.00000000 333.00000 0.00000000 0.00000000 1.00000000 0.00000 8 'point symmetry operation' ? ? -0.86602540 0.50000000 0.00000000 227.44324 -0.50000000 -0.86602540 0.00000000 393.94323 0.00000000 0.00000000 1.00000000 0.00000 9 'point symmetry operation' ? ? -0.50000000 0.86602540 0.00000000 105.55678 -0.86602540 -0.50000000 0.00000000 393.94323 0.00000000 0.00000000 1.00000000 0.00000 10 'point symmetry operation' ? ? 0.00000000 1.00000000 0.00000000 0.00000 -1.00000000 0.00000000 0.00000000 333.00001 0.00000000 0.00000000 1.00000000 0.00000 11 'point symmetry operation' ? ? 0.50000000 0.86602540 0.00000000 -60.94323 -0.86602540 0.50000000 0.00000000 227.44323 0.00000000 0.00000000 1.00000000 0.00000 12 'point symmetry operation' ? ? 0.86602540 0.50000000 0.00000000 -60.94323 -0.50000000 0.86602540 0.00000000 105.55677 0.00000000 0.00000000 1.00000000 0.00000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ARG A 40 ? GLY A 46 ? ARG A 40 GLY A 46 1 ? 7 HELX_P HELX_P2 AA2 ASN A 52 ? TYR A 63 ? ASN A 52 TYR A 63 1 ? 12 HELX_P HELX_P3 AA3 TYR A 63 ? HIS A 79 ? TYR A 63 HIS A 79 1 ? 17 HELX_P HELX_P4 AA4 SER A 95 ? ASN A 122 ? SER A 95 ASN A 122 1 ? 28 HELX_P HELX_P5 AA5 ASP A 142 ? ILE A 149 ? ASP A 142 ILE A 149 1 ? 8 HELX_P HELX_P6 AA6 LYS A 150 ? LYS A 152 ? LYS A 150 LYS A 152 5 ? 3 HELX_P HELX_P7 AA7 SER A 190 ? VAL A 192 ? SER A 190 VAL A 192 5 ? 3 HELX_P HELX_P8 AA8 HIS A 208 ? ASP A 210 ? HIS A 208 ASP A 210 5 ? 3 HELX_P HELX_P9 AA9 SER A 223 ? GLY A 227 ? SER A 223 GLY A 227 5 ? 5 HELX_P HELX_P10 AB1 GLY A 234 ? SER A 256 ? GLY A 234 SER A 256 1 ? 23 HELX_P HELX_P11 AB2 SER A 270 ? MET A 278 ? SER A 270 MET A 278 1 ? 9 HELX_P HELX_P12 AB3 PRO A 281 ? GLY A 299 ? PRO A 281 GLY A 299 1 ? 19 HELX_P HELX_P13 AB4 ASP A 320 ? VAL A 336 ? ASP A 320 VAL A 336 1 ? 17 HELX_P HELX_P14 AB5 PRO A 339 ? LEU A 344 ? PRO A 339 LEU A 344 1 ? 6 HELX_P HELX_P15 AB6 VAL A 350 ? TRP A 371 ? VAL A 350 TRP A 371 1 ? 22 HELX_P HELX_P16 AB7 TRP A 371 ? PHE A 386 ? TRP A 371 PHE A 386 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 3 ? AA3 ? 3 ? AA4 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA4 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 THR A 83 ? GLU A 86 ? THR A 83 GLU A 86 AA1 2 TYR A 397 ? LYS A 400 ? TYR A 397 LYS A 400 AA2 1 ILE A 154 ? VAL A 160 ? ILE A 154 VAL A 160 AA2 2 SER A 125 ? ILE A 131 ? SER A 125 ILE A 131 AA2 3 ILE A 212 ? LEU A 215 ? ILE A 212 LEU A 215 AA3 1 LEU A 165 ? TRP A 170 ? LEU A 165 TRP A 170 AA3 2 PRO A 182 ? GLN A 188 ? PRO A 182 GLN A 188 AA3 3 SER A 204 ? ILE A 207 ? SER A 204 ILE A 207 AA4 1 LEU A 260 ? SER A 263 ? LEU A 260 SER A 263 AA4 2 ASP A 310 ? VAL A 313 ? ASP A 310 VAL A 313 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N THR A 83 ? N THR A 83 O LYS A 400 ? O LYS A 400 AA2 1 2 O VAL A 155 ? O VAL A 155 N GLN A 130 ? N GLN A 130 AA2 2 3 N SER A 125 ? N SER A 125 O LEU A 215 ? O LEU A 215 AA3 1 2 N ARG A 166 ? N ARG A 166 O GLU A 186 ? O GLU A 186 AA3 2 3 N TYR A 187 ? N TYR A 187 O VAL A 205 ? O VAL A 205 AA4 1 2 N SER A 263 ? N SER A 263 O ASP A 310 ? O ASP A 310 # _pdbx_entry_details.entry_id 9YIN _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MET A 81 ? ? 66.55 148.47 2 1 ASP A 90 ? ? -79.21 -169.30 3 1 THR A 408 ? ? -124.18 -166.83 # _pdbx_point_symmetry.entry_id 9YIN _pdbx_point_symmetry.Schoenflies_symbol C _pdbx_point_symmetry.circular_symmetry 12 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9YIN _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 9YIN _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 2.4 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 20482 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.5 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source NATURAL _em_entity_assembly.type VIRUS _em_entity_assembly.name 'Shigella phage Sf11 SMD-2017' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 9YIN _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 500 _em_imaging.nominal_defocus_max 2500 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? _em_imaging.objective_aperture ? _em_imaging.microscope_serial_number ? _em_imaging.microscope_version ? # _em_virus_entity.id 1 _em_virus_entity.virus_host_category ? _em_virus_entity.virus_type VIRION _em_virus_entity.virus_isolate OTHER _em_virus_entity.entity_assembly_id 1 _em_virus_entity.enveloped NO _em_virus_entity.empty NO _em_virus_entity.details ? # _em_vitrification.entry_id 9YIN _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 100 _em_vitrification.temp ? _em_vitrification.chamber_temperature 277.15 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9YIN _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 9YIN _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry C12 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A SER 2 ? A SER 2 3 1 Y 1 A LYS 3 ? A LYS 3 4 1 Y 1 A ILE 4 ? A ILE 4 5 1 Y 1 A ASP 5 ? A ASP 5 6 1 Y 1 A ALA 6 ? A ALA 6 7 1 Y 1 A LEU 7 ? A LEU 7 8 1 Y 1 A ASN 8 ? A ASN 8 9 1 Y 1 A ALA 9 ? A ALA 9 10 1 Y 1 A TYR 10 ? A TYR 10 11 1 Y 1 A ILE 11 ? A ILE 11 12 1 Y 1 A ARG 12 ? A ARG 12 13 1 Y 1 A ASP 13 ? A ASP 13 14 1 Y 1 A ARG 14 ? A ARG 14 15 1 Y 1 A VAL 15 ? A VAL 15 16 1 Y 1 A ALA 16 ? A ALA 16 17 1 Y 1 A ASN 17 ? A ASN 17 18 1 Y 1 A ASN 18 ? A ASN 18 19 1 Y 1 A ASN 19 ? A ASN 19 20 1 Y 1 A ARG 20 ? A ARG 20 21 1 Y 1 A ALA 21 ? A ALA 21 22 1 Y 1 A ILE 22 ? A ILE 22 23 1 Y 1 A GLN 23 ? A GLN 23 24 1 Y 1 A GLN 24 ? A GLN 24 25 1 Y 1 A GLN 25 ? A GLN 25 26 1 Y 1 A ARG 26 ? A ARG 26 27 1 Y 1 A LEU 27 ? A LEU 27 28 1 Y 1 A CYS 28 ? A CYS 28 29 1 Y 1 A ASP 411 ? A ASP 411 30 1 Y 1 A LYS 412 ? A LYS 412 31 1 Y 1 A ALA 413 ? A ALA 413 32 1 Y 1 A GLU 414 ? A GLU 414 33 1 Y 1 A LEU 415 ? A LEU 415 34 1 Y 1 A ILE 416 ? A ILE 416 35 1 Y 1 A VAL 417 ? A VAL 417 36 1 Y 1 A LYS 418 ? A LYS 418 37 1 Y 1 A LEU 419 ? A LEU 419 38 1 Y 1 A ALA 420 ? A ALA 420 39 1 Y 1 A GLN 421 ? A GLN 421 40 1 Y 1 A ALA 422 ? A ALA 422 41 1 Y 1 A ALA 423 ? A ALA 423 42 1 Y 1 A GLN 424 ? A GLN 424 43 1 Y 1 A SER 425 ? A SER 425 44 1 Y 1 A ALA 426 ? A ALA 426 45 1 Y 1 A ALA 427 ? A ALA 427 46 1 Y 1 A ASN 428 ? A ASN 428 47 1 Y 1 A ALA 429 ? A ALA 429 48 1 Y 1 A GLY 430 ? A GLY 430 49 1 Y 1 A VAL 431 ? A VAL 431 50 1 Y 1 A GLY 432 ? A GLY 432 51 1 Y 1 A GLN 433 ? A GLN 433 52 1 Y 1 A ILE 434 ? A ILE 434 53 1 Y 1 A LEU 435 ? A LEU 435 54 1 Y 1 A THR 436 ? A THR 436 55 1 Y 1 A ASP 437 ? A ASP 437 56 1 Y 1 A ASP 438 ? A ASP 438 57 1 Y 1 A GLU 439 ? A GLU 439 58 1 Y 1 A ILE 440 ? A ILE 440 59 1 Y 1 A ARG 441 ? A ARG 441 60 1 Y 1 A GLY 442 ? A GLY 442 61 1 Y 1 A PHE 443 ? A PHE 443 62 1 Y 1 A LEU 444 ? A LEU 444 63 1 Y 1 A GLY 445 ? A GLY 445 64 1 Y 1 A LEU 446 ? A LEU 446 65 1 Y 1 A GLU 447 ? A GLU 447 66 1 Y 1 A PRO 448 ? A PRO 448 67 1 Y 1 A ILE 449 ? A ILE 449 68 1 Y 1 A GLU 450 ? A GLU 450 69 1 Y 1 A MET 451 ? A MET 451 70 1 Y 1 A PRO 452 ? A PRO 452 71 1 Y 1 A ASP 453 ? A ASP 453 72 1 Y 1 A GLY 454 ? A GLY 454 73 1 Y 1 A TYR 455 ? A TYR 455 74 1 Y 1 A MET 456 ? A MET 456 75 1 Y 1 A GLU 457 ? A GLU 457 76 1 Y 1 A ASP 458 ? A ASP 458 77 1 Y 1 A THR 459 ? A THR 459 78 1 Y 1 A PRO 460 ? A PRO 460 79 1 Y 1 A PRO 461 ? A PRO 461 80 1 Y 1 A GLU 462 ? A GLU 462 81 1 Y 1 A GLY 463 ? A GLY 463 82 1 Y 1 A GLU 464 ? A GLU 464 83 1 Y 1 A ASP 465 ? A ASP 465 84 1 Y 1 A GLU 466 ? A GLU 466 85 1 Y 1 A ASP 467 ? A ASP 467 86 1 Y 1 A THR 468 ? A THR 468 87 1 Y 1 A PRO 469 ? A PRO 469 88 1 Y 1 A VAL 470 ? A VAL 470 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TRP N N N N 318 TRP CA C N S 319 TRP C C N N 320 TRP O O N N 321 TRP CB C N N 322 TRP CG C Y N 323 TRP CD1 C Y N 324 TRP CD2 C Y N 325 TRP NE1 N Y N 326 TRP CE2 C Y N 327 TRP CE3 C Y N 328 TRP CZ2 C Y N 329 TRP CZ3 C Y N 330 TRP CH2 C Y N 331 TRP OXT O N N 332 TRP H H N N 333 TRP H2 H N N 334 TRP HA H N N 335 TRP HB2 H N N 336 TRP HB3 H N N 337 TRP HD1 H N N 338 TRP HE1 H N N 339 TRP HE3 H N N 340 TRP HZ2 H N N 341 TRP HZ3 H N N 342 TRP HH2 H N N 343 TRP HXT H N N 344 TYR N N N N 345 TYR CA C N S 346 TYR C C N N 347 TYR O O N N 348 TYR CB C N N 349 TYR CG C Y N 350 TYR CD1 C Y N 351 TYR CD2 C Y N 352 TYR CE1 C Y N 353 TYR CE2 C Y N 354 TYR CZ C Y N 355 TYR OH O N N 356 TYR OXT O N N 357 TYR H H N N 358 TYR H2 H N N 359 TYR HA H N N 360 TYR HB2 H N N 361 TYR HB3 H N N 362 TYR HD1 H N N 363 TYR HD2 H N N 364 TYR HE1 H N N 365 TYR HE2 H N N 366 TYR HH H N N 367 TYR HXT H N N 368 VAL N N N N 369 VAL CA C N S 370 VAL C C N N 371 VAL O O N N 372 VAL CB C N N 373 VAL CG1 C N N 374 VAL CG2 C N N 375 VAL OXT O N N 376 VAL H H N N 377 VAL H2 H N N 378 VAL HA H N N 379 VAL HB H N N 380 VAL HG11 H N N 381 VAL HG12 H N N 382 VAL HG13 H N N 383 VAL HG21 H N N 384 VAL HG22 H N N 385 VAL HG23 H N N 386 VAL HXT H N N 387 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 SER N CA sing N N 275 SER N H sing N N 276 SER N H2 sing N N 277 SER CA C sing N N 278 SER CA CB sing N N 279 SER CA HA sing N N 280 SER C O doub N N 281 SER C OXT sing N N 282 SER CB OG sing N N 283 SER CB HB2 sing N N 284 SER CB HB3 sing N N 285 SER OG HG sing N N 286 SER OXT HXT sing N N 287 THR N CA sing N N 288 THR N H sing N N 289 THR N H2 sing N N 290 THR CA C sing N N 291 THR CA CB sing N N 292 THR CA HA sing N N 293 THR C O doub N N 294 THR C OXT sing N N 295 THR CB OG1 sing N N 296 THR CB CG2 sing N N 297 THR CB HB sing N N 298 THR OG1 HG1 sing N N 299 THR CG2 HG21 sing N N 300 THR CG2 HG22 sing N N 301 THR CG2 HG23 sing N N 302 THR OXT HXT sing N N 303 TRP N CA sing N N 304 TRP N H sing N N 305 TRP N H2 sing N N 306 TRP CA C sing N N 307 TRP CA CB sing N N 308 TRP CA HA sing N N 309 TRP C O doub N N 310 TRP C OXT sing N N 311 TRP CB CG sing N N 312 TRP CB HB2 sing N N 313 TRP CB HB3 sing N N 314 TRP CG CD1 doub Y N 315 TRP CG CD2 sing Y N 316 TRP CD1 NE1 sing Y N 317 TRP CD1 HD1 sing N N 318 TRP CD2 CE2 doub Y N 319 TRP CD2 CE3 sing Y N 320 TRP NE1 CE2 sing Y N 321 TRP NE1 HE1 sing N N 322 TRP CE2 CZ2 sing Y N 323 TRP CE3 CZ3 doub Y N 324 TRP CE3 HE3 sing N N 325 TRP CZ2 CH2 doub Y N 326 TRP CZ2 HZ2 sing N N 327 TRP CZ3 CH2 sing Y N 328 TRP CZ3 HZ3 sing N N 329 TRP CH2 HH2 sing N N 330 TRP OXT HXT sing N N 331 TYR N CA sing N N 332 TYR N H sing N N 333 TYR N H2 sing N N 334 TYR CA C sing N N 335 TYR CA CB sing N N 336 TYR CA HA sing N N 337 TYR C O doub N N 338 TYR C OXT sing N N 339 TYR CB CG sing N N 340 TYR CB HB2 sing N N 341 TYR CB HB3 sing N N 342 TYR CG CD1 doub Y N 343 TYR CG CD2 sing Y N 344 TYR CD1 CE1 sing Y N 345 TYR CD1 HD1 sing N N 346 TYR CD2 CE2 doub Y N 347 TYR CD2 HD2 sing N N 348 TYR CE1 CZ doub Y N 349 TYR CE1 HE1 sing N N 350 TYR CE2 CZ sing Y N 351 TYR CE2 HE2 sing N N 352 TYR CZ OH sing N N 353 TYR OH HH sing N N 354 TYR OXT HXT sing N N 355 VAL N CA sing N N 356 VAL N H sing N N 357 VAL N H2 sing N N 358 VAL CA C sing N N 359 VAL CA CB sing N N 360 VAL CA HA sing N N 361 VAL C O doub N N 362 VAL C OXT sing N N 363 VAL CB CG1 sing N N 364 VAL CB CG2 sing N N 365 VAL CB HB sing N N 366 VAL CG1 HG11 sing N N 367 VAL CG1 HG12 sing N N 368 VAL CG1 HG13 sing N N 369 VAL CG2 HG21 sing N N 370 VAL CG2 HG22 sing N N 371 VAL CG2 HG23 sing N N 372 VAL OXT HXT sing N N 373 # _em_admin.current_status REL _em_admin.deposition_date 2025-10-01 _em_admin.deposition_site RCSB _em_admin.entry_id 9YIN _em_admin.last_update 2025-11-12 _em_admin.map_release_date 2025-11-12 _em_admin.title 'Sf11 bacteriophage portal' # loop_ _em_buffer_component.buffer_id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.id _em_buffer_component.name 1 10 mM ? 1 'tris(hydroxymethyl)aminomethane' 1 10 mM ? 2 'magnesium chloride' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type NONE # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 2282196 _em_entity_assembly_naturalsource.organism 'Shigella phage Sf11 SMD-2017' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 50.45 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOCONTINUUM (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version _em_software.reference_DOI 'PARTICLE SELECTION' ? 1 1 ? ? cryoSPARC ? ? 'MODEL REFINEMENT' ? 2 ? ? ? PHENIX 1.20.1_4487: ? 'IMAGE ACQUISITION' ? 3 1 1 1 ? ? ? MASKING ? 4 1 1 1 ? ? ? 'CTF CORRECTION' ? 5 1 ? ? ? ? ? 'LAYERLINE INDEXING' ? 6 1 1 1 ? ? ? 'DIFFRACTION INDEXING' ? 7 1 1 1 ? ? ? 'MODEL FITTING' ? 8 1 1 1 ? ? ? OTHER ? 9 1 1 1 ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? ? RECONSTRUCTION ? 13 1 ? ? cryoSPARC ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _em_virus_natural_host.entity_assembly_id 1 _em_virus_natural_host.id 1 _em_virus_natural_host.ncbi_tax_id 424720 _em_virus_natural_host.organism 'Shigella flexneri Y' _em_virus_natural_host.strain ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM116789 1 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM140803 2 'National Science Foundation (NSF, United States)' 'United States' 1750125 3 # _atom_sites.entry_id 9YIN _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ #