data_9YK3 # _entry.id 9YK3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.410 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9YK3 pdb_00009yk3 10.2210/pdb9yk3/pdb WWPDB D_1000300710 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2026-03-18 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9YK3 _pdbx_database_status.recvd_initial_deposition_date 2025-10-06 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB '9YJL contains wild-type protein in apo-form' 9YJL unspecified PDB '9YJM contains same mutant protein in apo-form' 9YJM unspecified PDB '9YK1 contains same mutant protein in complex with different RNA/DNA hybrid' 9YK1 unspecified # _pdbx_contact_author.id 2 _pdbx_contact_author.email kovalevskyay@ornl.gov _pdbx_contact_author.name_first Andrey _pdbx_contact_author.name_last Kovalevsky _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-4459-9142 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Kovalevsky, A.' 1 ? 'Gerlits, O.' 2 ? # loop_ _citation.abstract _citation.abstract_id_CAS _citation.book_id_ISBN _citation.book_publisher _citation.book_publisher_city _citation.book_title _citation.coordinate_linkage _citation.country _citation.database_id_Medline _citation.details _citation.id _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_full _citation.journal_issue _citation.journal_volume _citation.language _citation.page_first _citation.page_last _citation.title _citation.year _citation.database_id_CSD _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_patent _citation.unpublished_flag ? ? ? ? ? ? ? UK ? ? primary 'Curr Res Struct Biol' ? ? 2665-928X ? ? 11 ? 100188 ? ;Structural insights into RNase H catalytic mechanism from room-temperature X-ray and neutron crystallography of apo- and RNA/DNA hybrid-bound enzyme ; 2026 ? 10.1016/j.crstbi.2026.100188 ? ? ? ? ? ? ? ? ? ? ? ? ? 1 'To Be Published' ? 0353 ? ? ? ? ? ? ? 'Generalized X-ray and neutron crystallographic analysis: more accurate and complete structures for biological macromolecules' ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 'To Be Published' ? 0353 ? ? ? ? ? ? ? ;Structural insights into RNase H catalytic mechanism from room-temperature X-ray and neutron crystallography of apo- and RNA/DNA hybrid-bound enzyme ; ? ? ? ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gerlits, O.' 1 ? primary 'Collins, A.' 2 ? primary 'Kovalevsky, A.' 3 ? 1 'Adams, P.D.' 4 ? 1 'Mustyakimov, M.' 5 ? 1 'Afonine, P.V.' 6 ? 1 'Langan, P.' 7 ? 2 'Gerlits, O.' 8 ? 2 'Collins, A.' 9 ? 2 'Kovalevsky, A.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Ribonuclease H' 16003.082 1 3.1.26.4 D132N ? ? 2 polymer syn ;RNA (5'-R(*CP*GP*AP*CP*AP*U)-3') ; 1875.189 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*AP*TP*GP*TP*CP*G)-3') ; 1824.228 1 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 5 water nat water 18.015 72 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'RNase H' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;SAKEEIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSRKPIYSNSQTAI KWVKDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKADYGRK ; ;SAKEEIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSRKPIYSNSQTAI KWVKDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKADYGRK ; A ? 2 polyribonucleotide no no CGACAU CGACAU B ? 3 polydeoxyribonucleotide no no '(DA)(DT)(DG)(DT)(DC)(DG)' ATGTCG C ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'MAGNESIUM ION' MG 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ALA n 1 3 LYS n 1 4 GLU n 1 5 GLU n 1 6 ILE n 1 7 ILE n 1 8 TRP n 1 9 GLU n 1 10 SER n 1 11 LEU n 1 12 SER n 1 13 VAL n 1 14 ASP n 1 15 VAL n 1 16 GLY n 1 17 SER n 1 18 GLN n 1 19 GLY n 1 20 ASN n 1 21 PRO n 1 22 GLY n 1 23 ILE n 1 24 VAL n 1 25 GLU n 1 26 TYR n 1 27 LYS n 1 28 GLY n 1 29 VAL n 1 30 ASP n 1 31 THR n 1 32 LYS n 1 33 THR n 1 34 GLY n 1 35 GLU n 1 36 VAL n 1 37 LEU n 1 38 PHE n 1 39 GLU n 1 40 ARG n 1 41 GLU n 1 42 PRO n 1 43 ILE n 1 44 PRO n 1 45 ILE n 1 46 GLY n 1 47 THR n 1 48 ASN n 1 49 ASN n 1 50 MET n 1 51 GLY n 1 52 GLU n 1 53 PHE n 1 54 LEU n 1 55 ALA n 1 56 ILE n 1 57 VAL n 1 58 HIS n 1 59 GLY n 1 60 LEU n 1 61 ARG n 1 62 TYR n 1 63 LEU n 1 64 LYS n 1 65 GLU n 1 66 ARG n 1 67 ASN n 1 68 SER n 1 69 ARG n 1 70 LYS n 1 71 PRO n 1 72 ILE n 1 73 TYR n 1 74 SER n 1 75 ASN n 1 76 SER n 1 77 GLN n 1 78 THR n 1 79 ALA n 1 80 ILE n 1 81 LYS n 1 82 TRP n 1 83 VAL n 1 84 LYS n 1 85 ASP n 1 86 LYS n 1 87 LYS n 1 88 ALA n 1 89 LYS n 1 90 SER n 1 91 THR n 1 92 LEU n 1 93 VAL n 1 94 ARG n 1 95 ASN n 1 96 GLU n 1 97 GLU n 1 98 THR n 1 99 ALA n 1 100 LEU n 1 101 ILE n 1 102 TRP n 1 103 LYS n 1 104 LEU n 1 105 VAL n 1 106 ASP n 1 107 GLU n 1 108 ALA n 1 109 GLU n 1 110 GLU n 1 111 TRP n 1 112 LEU n 1 113 ASN n 1 114 THR n 1 115 HIS n 1 116 THR n 1 117 TYR n 1 118 GLU n 1 119 THR n 1 120 PRO n 1 121 ILE n 1 122 LEU n 1 123 LYS n 1 124 TRP n 1 125 GLN n 1 126 THR n 1 127 ASP n 1 128 LYS n 1 129 TRP n 1 130 GLY n 1 131 GLU n 1 132 ILE n 1 133 LYS n 1 134 ALA n 1 135 ASP n 1 136 TYR n 1 137 GLY n 1 138 ARG n 1 139 LYS n 2 1 C n 2 2 G n 2 3 A n 2 4 C n 2 5 A n 2 6 U n 3 1 DA n 3 2 DT n 3 3 DG n 3 4 DT n 3 5 DC n 3 6 DG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 139 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'rnhA, BH0863' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Halalkalibacterium halodurans' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 86665 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample 1 6 'Halalkalibacterium halodurans' ? 86665 ? 3 1 sample 1 6 'Halalkalibacterium halodurans' ? 86665 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 58 ? ? ? A . n A 1 2 ALA 2 59 ? ? ? A . n A 1 3 LYS 3 60 ? ? ? A . n A 1 4 GLU 4 61 61 GLU GLU A . n A 1 5 GLU 5 62 62 GLU GLU A . n A 1 6 ILE 6 63 63 ILE ILE A . n A 1 7 ILE 7 64 64 ILE ILE A . n A 1 8 TRP 8 65 65 TRP TRP A . n A 1 9 GLU 9 66 66 GLU GLU A . n A 1 10 SER 10 67 67 SER SER A . n A 1 11 LEU 11 68 68 LEU LEU A . n A 1 12 SER 12 69 69 SER SER A . n A 1 13 VAL 13 70 70 VAL VAL A . n A 1 14 ASP 14 71 71 ASP ASP A . n A 1 15 VAL 15 72 72 VAL VAL A . n A 1 16 GLY 16 73 73 GLY GLY A . n A 1 17 SER 17 74 74 SER SER A . n A 1 18 GLN 18 75 75 GLN GLN A . n A 1 19 GLY 19 76 76 GLY GLY A . n A 1 20 ASN 20 77 77 ASN ASN A . n A 1 21 PRO 21 78 78 PRO PRO A . n A 1 22 GLY 22 79 79 GLY GLY A . n A 1 23 ILE 23 80 80 ILE ILE A . n A 1 24 VAL 24 81 81 VAL VAL A . n A 1 25 GLU 25 82 82 GLU GLU A . n A 1 26 TYR 26 83 83 TYR TYR A . n A 1 27 LYS 27 84 84 LYS LYS A . n A 1 28 GLY 28 85 85 GLY GLY A . n A 1 29 VAL 29 86 86 VAL VAL A . n A 1 30 ASP 30 87 87 ASP ASP A . n A 1 31 THR 31 88 88 THR THR A . n A 1 32 LYS 32 89 89 LYS LYS A . n A 1 33 THR 33 90 90 THR THR A . n A 1 34 GLY 34 91 91 GLY GLY A . n A 1 35 GLU 35 92 92 GLU GLU A . n A 1 36 VAL 36 93 93 VAL VAL A . n A 1 37 LEU 37 94 94 LEU LEU A . n A 1 38 PHE 38 95 95 PHE PHE A . n A 1 39 GLU 39 96 96 GLU GLU A . n A 1 40 ARG 40 97 97 ARG ARG A . n A 1 41 GLU 41 98 98 GLU GLU A . n A 1 42 PRO 42 99 99 PRO PRO A . n A 1 43 ILE 43 100 100 ILE ILE A . n A 1 44 PRO 44 101 101 PRO PRO A . n A 1 45 ILE 45 102 102 ILE ILE A . n A 1 46 GLY 46 103 103 GLY GLY A . n A 1 47 THR 47 104 104 THR THR A . n A 1 48 ASN 48 105 105 ASN ASN A . n A 1 49 ASN 49 106 106 ASN ASN A . n A 1 50 MET 50 107 107 MET MET A . n A 1 51 GLY 51 108 108 GLY GLY A . n A 1 52 GLU 52 109 109 GLU GLU A . n A 1 53 PHE 53 110 110 PHE PHE A . n A 1 54 LEU 54 111 111 LEU LEU A . n A 1 55 ALA 55 112 112 ALA ALA A . n A 1 56 ILE 56 113 113 ILE ILE A . n A 1 57 VAL 57 114 114 VAL VAL A . n A 1 58 HIS 58 115 115 HIS HIS A . n A 1 59 GLY 59 116 116 GLY GLY A . n A 1 60 LEU 60 117 117 LEU LEU A . n A 1 61 ARG 61 118 118 ARG ARG A . n A 1 62 TYR 62 119 119 TYR TYR A . n A 1 63 LEU 63 120 120 LEU LEU A . n A 1 64 LYS 64 121 121 LYS LYS A . n A 1 65 GLU 65 122 122 GLU GLU A . n A 1 66 ARG 66 123 123 ARG ARG A . n A 1 67 ASN 67 124 124 ASN ASN A . n A 1 68 SER 68 125 125 SER SER A . n A 1 69 ARG 69 126 126 ARG ARG A . n A 1 70 LYS 70 127 127 LYS LYS A . n A 1 71 PRO 71 128 128 PRO PRO A . n A 1 72 ILE 72 129 129 ILE ILE A . n A 1 73 TYR 73 130 130 TYR TYR A . n A 1 74 SER 74 131 131 SER SER A . n A 1 75 ASN 75 132 132 ASN ASN A . n A 1 76 SER 76 133 133 SER SER A . n A 1 77 GLN 77 134 134 GLN GLN A . n A 1 78 THR 78 135 135 THR THR A . n A 1 79 ALA 79 136 136 ALA ALA A . n A 1 80 ILE 80 137 137 ILE ILE A . n A 1 81 LYS 81 138 138 LYS LYS A . n A 1 82 TRP 82 139 139 TRP TRP A . n A 1 83 VAL 83 140 140 VAL VAL A . n A 1 84 LYS 84 141 141 LYS LYS A . n A 1 85 ASP 85 142 142 ASP ASP A . n A 1 86 LYS 86 143 143 LYS LYS A . n A 1 87 LYS 87 144 144 LYS LYS A . n A 1 88 ALA 88 145 145 ALA ALA A . n A 1 89 LYS 89 146 146 LYS LYS A . n A 1 90 SER 90 147 147 SER SER A . n A 1 91 THR 91 148 148 THR THR A . n A 1 92 LEU 92 149 149 LEU LEU A . n A 1 93 VAL 93 150 150 VAL VAL A . n A 1 94 ARG 94 151 151 ARG ARG A . n A 1 95 ASN 95 152 152 ASN ASN A . n A 1 96 GLU 96 153 153 GLU GLU A . n A 1 97 GLU 97 154 154 GLU GLU A . n A 1 98 THR 98 155 155 THR THR A . n A 1 99 ALA 99 156 156 ALA ALA A . n A 1 100 LEU 100 157 157 LEU LEU A . n A 1 101 ILE 101 158 158 ILE ILE A . n A 1 102 TRP 102 159 159 TRP TRP A . n A 1 103 LYS 103 160 160 LYS LYS A . n A 1 104 LEU 104 161 161 LEU LEU A . n A 1 105 VAL 105 162 162 VAL VAL A . n A 1 106 ASP 106 163 163 ASP ASP A . n A 1 107 GLU 107 164 164 GLU GLU A . n A 1 108 ALA 108 165 165 ALA ALA A . n A 1 109 GLU 109 166 166 GLU GLU A . n A 1 110 GLU 110 167 167 GLU GLU A . n A 1 111 TRP 111 168 168 TRP TRP A . n A 1 112 LEU 112 169 169 LEU LEU A . n A 1 113 ASN 113 170 170 ASN ASN A . n A 1 114 THR 114 171 171 THR THR A . n A 1 115 HIS 115 172 172 HIS HIS A . n A 1 116 THR 116 173 173 THR THR A . n A 1 117 TYR 117 174 174 TYR TYR A . n A 1 118 GLU 118 175 175 GLU GLU A . n A 1 119 THR 119 176 176 THR THR A . n A 1 120 PRO 120 177 177 PRO PRO A . n A 1 121 ILE 121 178 178 ILE ILE A . n A 1 122 LEU 122 179 179 LEU LEU A . n A 1 123 LYS 123 180 180 LYS LYS A . n A 1 124 TRP 124 181 181 TRP TRP A . n A 1 125 GLN 125 182 182 GLN GLN A . n A 1 126 THR 126 183 183 THR THR A . n A 1 127 ASP 127 184 184 ASP ASP A . n A 1 128 LYS 128 185 185 LYS LYS A . n A 1 129 TRP 129 186 186 TRP TRP A . n A 1 130 GLY 130 187 187 GLY GLY A . n A 1 131 GLU 131 188 188 GLU GLU A . n A 1 132 ILE 132 189 189 ILE ILE A . n A 1 133 LYS 133 190 190 LYS LYS A . n A 1 134 ALA 134 191 191 ALA ALA A . n A 1 135 ASP 135 192 192 ASP ASP A . n A 1 136 TYR 136 193 193 TYR TYR A . n A 1 137 GLY 137 194 194 GLY GLY A . n A 1 138 ARG 138 195 ? ? ? A . n A 1 139 LYS 139 196 ? ? ? A . n B 2 1 C 1 1 1 C C B . n B 2 2 G 2 2 2 G G B . n B 2 3 A 3 3 3 A A B . n B 2 4 C 4 4 4 C C B . n B 2 5 A 5 5 5 A A B . n B 2 6 U 6 6 6 U U B . n C 3 1 DA 1 1 1 DA DA C . n C 3 2 DT 2 2 2 DT DT C . n C 3 3 DG 3 3 3 DG DG C . n C 3 4 DT 4 4 4 DT DT C . n C 3 5 DC 5 5 5 DC DC C . n C 3 6 DG 6 6 6 DG DG C . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id MG _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id MG _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG 1 201 1 MG MG A . E 4 MG 1 202 2 MG MG A . F 5 HOH 1 301 72 HOH HOH A . F 5 HOH 2 302 34 HOH HOH A . F 5 HOH 3 303 23 HOH HOH A . F 5 HOH 4 304 24 HOH HOH A . F 5 HOH 5 305 5 HOH HOH A . F 5 HOH 6 306 43 HOH HOH A . F 5 HOH 7 307 6 HOH HOH A . F 5 HOH 8 308 32 HOH HOH A . F 5 HOH 9 309 22 HOH HOH A . F 5 HOH 10 310 13 HOH HOH A . F 5 HOH 11 311 41 HOH HOH A . F 5 HOH 12 312 35 HOH HOH A . F 5 HOH 13 313 19 HOH HOH A . F 5 HOH 14 314 2 HOH HOH A . F 5 HOH 15 315 7 HOH HOH A . F 5 HOH 16 316 49 HOH HOH A . F 5 HOH 17 317 62 HOH HOH A . F 5 HOH 18 318 1 HOH HOH A . F 5 HOH 19 319 3 HOH HOH A . F 5 HOH 20 320 29 HOH HOH A . F 5 HOH 21 321 73 HOH HOH A . F 5 HOH 22 322 17 HOH HOH A . F 5 HOH 23 323 8 HOH HOH A . F 5 HOH 24 324 11 HOH HOH A . F 5 HOH 25 325 33 HOH HOH A . F 5 HOH 26 326 39 HOH HOH A . F 5 HOH 27 327 44 HOH HOH A . F 5 HOH 28 328 4 HOH HOH A . F 5 HOH 29 329 18 HOH HOH A . F 5 HOH 30 330 36 HOH HOH A . F 5 HOH 31 331 55 HOH HOH A . F 5 HOH 32 332 70 HOH HOH A . F 5 HOH 33 333 68 HOH HOH A . F 5 HOH 34 334 50 HOH HOH A . F 5 HOH 35 335 31 HOH HOH A . F 5 HOH 36 336 67 HOH HOH A . F 5 HOH 37 337 74 HOH HOH A . F 5 HOH 38 338 14 HOH HOH A . F 5 HOH 39 339 66 HOH HOH A . F 5 HOH 40 340 47 HOH HOH A . F 5 HOH 41 341 75 HOH HOH A . F 5 HOH 42 342 16 HOH HOH A . F 5 HOH 43 343 60 HOH HOH A . F 5 HOH 44 344 45 HOH HOH A . G 5 HOH 1 101 27 HOH HOH B . G 5 HOH 2 102 26 HOH HOH B . G 5 HOH 3 103 20 HOH HOH B . G 5 HOH 4 104 21 HOH HOH B . G 5 HOH 5 105 40 HOH HOH B . G 5 HOH 6 106 15 HOH HOH B . G 5 HOH 7 107 53 HOH HOH B . G 5 HOH 8 108 25 HOH HOH B . G 5 HOH 9 109 46 HOH HOH B . G 5 HOH 10 110 10 HOH HOH B . G 5 HOH 11 111 30 HOH HOH B . G 5 HOH 12 112 57 HOH HOH B . G 5 HOH 13 113 48 HOH HOH B . G 5 HOH 14 114 56 HOH HOH B . G 5 HOH 15 115 61 HOH HOH B . G 5 HOH 16 116 71 HOH HOH B . H 5 HOH 1 101 52 HOH HOH C . H 5 HOH 2 102 42 HOH HOH C . H 5 HOH 3 103 37 HOH HOH C . H 5 HOH 4 104 64 HOH HOH C . H 5 HOH 5 105 59 HOH HOH C . H 5 HOH 6 106 12 HOH HOH C . H 5 HOH 7 107 54 HOH HOH C . H 5 HOH 8 108 28 HOH HOH C . H 5 HOH 9 109 63 HOH HOH C . H 5 HOH 10 110 51 HOH HOH C . H 5 HOH 11 111 38 HOH HOH C . H 5 HOH 12 112 58 HOH HOH C . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_reference_DOI _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.19.2_4158: ???)' ? 1 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? . ? 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? CrysalisPro ? ? ? . ? 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . ? 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . ? 5 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 96.11 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9YK3 _cell.details ? _cell.formula_units_Z ? _cell.length_a 81.974 _cell.length_a_esd ? _cell.length_b 37.935 _cell.length_b_esd ? _cell.length_c 62.155 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9YK3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9YK3 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.44 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 49.56 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M HEPES pH 7.5, 0.2 M NaCl, and 12-16% PEG 10,000' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293 # _diffrn.ambient_environment ? _diffrn.ambient_temp 293 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER R 4M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2025-06-10 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'ROTATING ANODE' _diffrn_source.target ? _diffrn_source.type 'RIGAKU MICROMAX-007 HF' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.54 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 9YK3 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.90 _reflns.d_resolution_low 61.8 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 14414 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 94.7 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 4.3 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 16.2 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.064 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.950 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.112 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.90 _reflns_shell.d_res_low 1.97 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.8 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1377 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 3.3 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.366 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.538 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all 90.1 _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.563 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9YK3 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.90 _refine.ls_d_res_low 21.40 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 14361 _refine.ls_number_reflns_R_free 702 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 94.41 _refine.ls_percent_reflns_R_free 4.89 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2025 _refine.ls_R_factor_R_free 0.2311 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2010 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.37 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details random _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 27.22 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.27 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1089 _refine_hist.pdbx_number_atoms_nucleic_acid 245 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 72 _refine_hist.number_atoms_total 1408 _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 21.40 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.004 ? 1392 ? f_bond_d ? ? ? 'X-RAY DIFFRACTION' ? 0.676 ? 1939 ? f_angle_d ? ? ? 'X-RAY DIFFRACTION' ? 15.314 ? 269 ? f_dihedral_angle_d ? ? ? 'X-RAY DIFFRACTION' ? 0.044 ? 218 ? f_chiral_restr ? ? ? 'X-RAY DIFFRACTION' ? 0.006 ? 203 ? f_plane_restr ? ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.correlation_coeff_Fo_to_Fc _refine_ls_shell.correlation_coeff_Fo_to_Fc_free _refine_ls_shell.correlation_coeff_I_to_Fcsqd_work _refine_ls_shell.correlation_coeff_I_to_Fcsqd_free _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 1.90 2.05 . . 125 2611 91.00 . . . . 0.2972 . . . . . . . . . . . . . . . 0.3544 'X-RAY DIFFRACTION' 2.05 2.25 . . 128 2704 94.00 . . . . 0.2317 . . . . . . . . . . . . . . . 0.2506 'X-RAY DIFFRACTION' 2.25 2.58 . . 154 2726 95.00 . . . . 0.2121 . . . . . . . . . . . . . . . 0.2438 'X-RAY DIFFRACTION' 2.58 3.25 . . 145 2794 96.00 . . . . 0.2099 . . . . . . . . . . . . . . . 0.2333 'X-RAY DIFFRACTION' 3.25 21.40 . . 150 2824 95.00 . . . . 0.1727 . . . . . . . . . . . . . . . 0.2059 # _struct.entry_id 9YK3 _struct.title 'Room-temperature X-ray structure of D132N Bacillus halodurans RNase H1 in complex with complementary RNA/DNA duplex' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9YK3 _struct_keywords.text 'rna hydrolase, nucleic acid binding, RNA/DNA hybrid, HYDROLASE, HYDROLASE-RNA-DNA complex' _struct_keywords.pdbx_keywords HYDROLASE/RNA/DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? G N N 5 ? H N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP RNH1_HALH5 Q9KEI9 ? 1 ;AKEEIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSRKPIYSDSQTAIK WVKDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKADYGRK ; 59 2 PDB 9YK3 9YK3 ? 2 ? 1 3 PDB 9YK3 9YK3 ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9YK3 A 2 ? 139 ? Q9KEI9 59 ? 196 ? 59 196 2 2 9YK3 B 1 ? 6 ? 9YK3 1 ? 6 ? 1 6 3 3 9YK3 C 1 ? 6 ? 9YK3 1 ? 6 ? 1 6 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 9YK3 SER A 1 ? UNP Q9KEI9 ? ? 'expression tag' 58 1 1 9YK3 ASN A 75 ? UNP Q9KEI9 ASP 132 'engineered mutation' 132 2 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2310 ? 1 MORE -36 ? 1 'SSA (A^2)' 8420 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 47 ? ARG A 66 ? THR A 104 ARG A 123 1 ? 20 HELX_P HELX_P2 AA2 SER A 76 ? LYS A 86 ? SER A 133 LYS A 143 1 ? 11 HELX_P HELX_P3 AA3 THR A 98 ? ASN A 113 ? THR A 155 ASN A 170 1 ? 16 HELX_P HELX_P4 AA4 GLN A 125 ? GLY A 130 ? GLN A 182 GLY A 187 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A ASP 14 OD1 ? ? ? 1_555 D MG . MG ? ? A ASP 71 A MG 201 1_555 ? ? ? ? ? ? ? 2.173 ? ? metalc2 metalc ? ? A ASP 14 OD2 ? ? ? 1_555 E MG . MG ? ? A ASP 71 A MG 202 1_555 ? ? ? ? ? ? ? 2.153 ? ? metalc3 metalc ? ? A GLU 52 OE1 ? ? ? 1_555 D MG . MG ? ? A GLU 109 A MG 201 1_555 ? ? ? ? ? ? ? 2.863 ? ? metalc4 metalc ? ? A GLU 52 OE2 ? ? ? 1_555 D MG . MG ? ? A GLU 109 A MG 201 1_555 ? ? ? ? ? ? ? 2.213 ? ? metalc5 metalc ? ? A ASN 75 OD1 ? ? ? 1_555 D MG . MG ? ? A ASN 132 A MG 201 1_555 ? ? ? ? ? ? ? 2.328 ? ? metalc6 metalc ? ? A ASP 135 OD1 ? ? ? 1_555 E MG . MG ? ? A ASP 192 A MG 202 1_555 ? ? ? ? ? ? ? 2.174 ? ? metalc7 metalc ? ? D MG . MG ? ? ? 1_555 B A 5 "O3'" ? ? A MG 201 B A 5 1_555 ? ? ? ? ? ? ? 2.910 ? ? metalc8 metalc ? ? D MG . MG ? ? ? 1_555 B U 6 OP1 ? ? A MG 201 B U 6 1_555 ? ? ? ? ? ? ? 2.878 ? ? metalc9 metalc ? ? E MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 202 A HOH 301 1_555 ? ? ? ? ? ? ? 2.393 ? ? metalc10 metalc ? ? E MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 202 A HOH 303 1_555 ? ? ? ? ? ? ? 2.272 ? ? metalc11 metalc ? ? E MG . MG ? ? ? 1_555 B U 6 OP1 ? ? A MG 202 B U 6 1_555 ? ? ? ? ? ? ? 2.001 ? ? metalc12 metalc ? ? E MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 202 B HOH 110 1_555 ? ? ? ? ? ? ? 2.350 ? ? hydrog1 hydrog ? ? B C 1 N3 ? ? ? 1_555 C DG 6 N1 ? ? B C 1 C DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B C 1 N4 ? ? ? 1_555 C DG 6 O6 ? ? B C 1 C DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B C 1 O2 ? ? ? 1_555 C DG 6 N2 ? ? B C 1 C DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B G 2 N1 ? ? ? 1_555 C DC 5 N3 ? ? B G 2 C DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B G 2 N2 ? ? ? 1_555 C DC 5 O2 ? ? B G 2 C DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B G 2 O6 ? ? ? 1_555 C DC 5 N4 ? ? B G 2 C DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B A 3 N1 ? ? ? 1_555 C DT 4 N3 ? ? B A 3 C DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B A 3 N6 ? ? ? 1_555 C DT 4 O4 ? ? B A 3 C DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B C 4 N3 ? ? ? 1_555 C DG 3 N1 ? ? B C 4 C DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B C 4 N4 ? ? ? 1_555 C DG 3 O6 ? ? B C 4 C DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B C 4 O2 ? ? ? 1_555 C DG 3 N2 ? ? B C 4 C DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B A 5 N1 ? ? ? 1_555 C DT 2 N3 ? ? B A 5 C DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B A 5 N6 ? ? ? 1_555 C DT 2 O4 ? ? B A 5 C DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B U 6 N3 ? ? ? 1_555 C DA 1 N1 ? ? B U 6 C DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B U 6 O4 ? ? ? 1_555 C DA 1 N6 ? ? B U 6 C DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD1 ? A ASP 14 ? A ASP 71 ? 1_555 MG ? D MG . ? A MG 201 ? 1_555 OE1 ? A GLU 52 ? A GLU 109 ? 1_555 96.9 ? 2 OD1 ? A ASP 14 ? A ASP 71 ? 1_555 MG ? D MG . ? A MG 201 ? 1_555 OE2 ? A GLU 52 ? A GLU 109 ? 1_555 125.0 ? 3 OE1 ? A GLU 52 ? A GLU 109 ? 1_555 MG ? D MG . ? A MG 201 ? 1_555 OE2 ? A GLU 52 ? A GLU 109 ? 1_555 49.4 ? 4 OD1 ? A ASP 14 ? A ASP 71 ? 1_555 MG ? D MG . ? A MG 201 ? 1_555 OD1 ? A ASN 75 ? A ASN 132 ? 1_555 123.8 ? 5 OE1 ? A GLU 52 ? A GLU 109 ? 1_555 MG ? D MG . ? A MG 201 ? 1_555 OD1 ? A ASN 75 ? A ASN 132 ? 1_555 97.1 ? 6 OE2 ? A GLU 52 ? A GLU 109 ? 1_555 MG ? D MG . ? A MG 201 ? 1_555 OD1 ? A ASN 75 ? A ASN 132 ? 1_555 104.9 ? 7 OD1 ? A ASP 14 ? A ASP 71 ? 1_555 MG ? D MG . ? A MG 201 ? 1_555 "O3'" ? B A 5 ? B A 5 ? 1_555 124.1 ? 8 OE1 ? A GLU 52 ? A GLU 109 ? 1_555 MG ? D MG . ? A MG 201 ? 1_555 "O3'" ? B A 5 ? B A 5 ? 1_555 128.9 ? 9 OE2 ? A GLU 52 ? A GLU 109 ? 1_555 MG ? D MG . ? A MG 201 ? 1_555 "O3'" ? B A 5 ? B A 5 ? 1_555 80.6 ? 10 OD1 ? A ASN 75 ? A ASN 132 ? 1_555 MG ? D MG . ? A MG 201 ? 1_555 "O3'" ? B A 5 ? B A 5 ? 1_555 84.9 ? 11 OD1 ? A ASP 14 ? A ASP 71 ? 1_555 MG ? D MG . ? A MG 201 ? 1_555 OP1 ? B U 6 ? B U 6 ? 1_555 73.7 ? 12 OE1 ? A GLU 52 ? A GLU 109 ? 1_555 MG ? D MG . ? A MG 201 ? 1_555 OP1 ? B U 6 ? B U 6 ? 1_555 151.9 ? 13 OE2 ? A GLU 52 ? A GLU 109 ? 1_555 MG ? D MG . ? A MG 201 ? 1_555 OP1 ? B U 6 ? B U 6 ? 1_555 114.2 ? 14 OD1 ? A ASN 75 ? A ASN 132 ? 1_555 MG ? D MG . ? A MG 201 ? 1_555 OP1 ? B U 6 ? B U 6 ? 1_555 110.3 ? 15 "O3'" ? B A 5 ? B A 5 ? 1_555 MG ? D MG . ? A MG 201 ? 1_555 OP1 ? B U 6 ? B U 6 ? 1_555 50.6 ? 16 OD2 ? A ASP 14 ? A ASP 71 ? 1_555 MG ? E MG . ? A MG 202 ? 1_555 OD1 ? A ASP 135 ? A ASP 192 ? 1_555 89.6 ? 17 OD2 ? A ASP 14 ? A ASP 71 ? 1_555 MG ? E MG . ? A MG 202 ? 1_555 O ? F HOH . ? A HOH 301 ? 1_555 85.1 ? 18 OD1 ? A ASP 135 ? A ASP 192 ? 1_555 MG ? E MG . ? A MG 202 ? 1_555 O ? F HOH . ? A HOH 301 ? 1_555 93.4 ? 19 OD2 ? A ASP 14 ? A ASP 71 ? 1_555 MG ? E MG . ? A MG 202 ? 1_555 O ? F HOH . ? A HOH 303 ? 1_555 99.6 ? 20 OD1 ? A ASP 135 ? A ASP 192 ? 1_555 MG ? E MG . ? A MG 202 ? 1_555 O ? F HOH . ? A HOH 303 ? 1_555 81.8 ? 21 O ? F HOH . ? A HOH 301 ? 1_555 MG ? E MG . ? A MG 202 ? 1_555 O ? F HOH . ? A HOH 303 ? 1_555 173.2 ? 22 OD2 ? A ASP 14 ? A ASP 71 ? 1_555 MG ? E MG . ? A MG 202 ? 1_555 OP1 ? B U 6 ? B U 6 ? 1_555 97.9 ? 23 OD1 ? A ASP 135 ? A ASP 192 ? 1_555 MG ? E MG . ? A MG 202 ? 1_555 OP1 ? B U 6 ? B U 6 ? 1_555 167.3 ? 24 O ? F HOH . ? A HOH 301 ? 1_555 MG ? E MG . ? A MG 202 ? 1_555 OP1 ? B U 6 ? B U 6 ? 1_555 97.5 ? 25 O ? F HOH . ? A HOH 303 ? 1_555 MG ? E MG . ? A MG 202 ? 1_555 OP1 ? B U 6 ? B U 6 ? 1_555 86.8 ? 26 OD2 ? A ASP 14 ? A ASP 71 ? 1_555 MG ? E MG . ? A MG 202 ? 1_555 O ? G HOH . ? B HOH 110 ? 1_555 170.9 ? 27 OD1 ? A ASP 135 ? A ASP 192 ? 1_555 MG ? E MG . ? A MG 202 ? 1_555 O ? G HOH . ? B HOH 110 ? 1_555 85.1 ? 28 O ? F HOH . ? A HOH 301 ? 1_555 MG ? E MG . ? A MG 202 ? 1_555 O ? G HOH . ? B HOH 110 ? 1_555 87.8 ? 29 O ? F HOH . ? A HOH 303 ? 1_555 MG ? E MG . ? A MG 202 ? 1_555 O ? G HOH . ? B HOH 110 ? 1_555 86.9 ? 30 OP1 ? B U 6 ? B U 6 ? 1_555 MG ? E MG . ? A MG 202 ? 1_555 O ? G HOH . ? B HOH 110 ? 1_555 88.7 ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ASN _struct_mon_prot_cis.label_seq_id 20 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ASN _struct_mon_prot_cis.auth_seq_id 77 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 21 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 78 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.05 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? parallel AA2 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 36 ? GLU A 39 ? VAL A 93 GLU A 96 AA1 2 GLY A 22 ? ASP A 30 ? GLY A 79 ASP A 87 AA1 3 ILE A 43 ? GLY A 46 ? ILE A 100 GLY A 103 AA2 1 VAL A 36 ? GLU A 39 ? VAL A 93 GLU A 96 AA2 2 GLY A 22 ? ASP A 30 ? GLY A 79 ASP A 87 AA2 3 LEU A 11 ? GLN A 18 ? LEU A 68 GLN A 75 AA2 4 ILE A 72 ? SER A 74 ? ILE A 129 SER A 131 AA2 5 ILE A 121 ? LYS A 123 ? ILE A 178 LYS A 180 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O LEU A 37 ? O LEU A 94 N GLY A 28 ? N GLY A 85 AA1 2 3 N VAL A 24 ? N VAL A 81 O ILE A 43 ? O ILE A 100 AA2 1 2 O LEU A 37 ? O LEU A 94 N GLY A 28 ? N GLY A 85 AA2 2 3 O VAL A 29 ? O VAL A 86 N SER A 12 ? N SER A 69 AA2 3 4 N LEU A 11 ? N LEU A 68 O TYR A 73 ? O TYR A 130 AA2 4 5 N ILE A 72 ? N ILE A 129 O LEU A 122 ? O LEU A 179 # _pdbx_entry_details.entry_id 9YK3 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 58 ? A SER 1 2 1 Y 1 A ALA 59 ? A ALA 2 3 1 Y 1 A LYS 60 ? A LYS 3 4 1 Y 1 A ARG 195 ? A ARG 138 5 1 Y 1 A LYS 196 ? A LYS 139 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 C OP3 O N N 111 C P P N N 112 C OP1 O N N 113 C OP2 O N N 114 C "O5'" O N N 115 C "C5'" C N N 116 C "C4'" C N R 117 C "O4'" O N N 118 C "C3'" C N S 119 C "O3'" O N N 120 C "C2'" C N R 121 C "O2'" O N N 122 C "C1'" C N R 123 C N1 N N N 124 C C2 C N N 125 C O2 O N N 126 C N3 N N N 127 C C4 C N N 128 C N4 N N N 129 C C5 C N N 130 C C6 C N N 131 C HOP3 H N N 132 C HOP2 H N N 133 C "H5'" H N N 134 C "H5''" H N N 135 C "H4'" H N N 136 C "H3'" H N N 137 C "HO3'" H N N 138 C "H2'" H N N 139 C "HO2'" H N N 140 C "H1'" H N N 141 C H41 H N N 142 C H42 H N N 143 C H5 H N N 144 C H6 H N N 145 DA OP3 O N N 146 DA P P N N 147 DA OP1 O N N 148 DA OP2 O N N 149 DA "O5'" O N N 150 DA "C5'" C N N 151 DA "C4'" C N R 152 DA "O4'" O N N 153 DA "C3'" C N S 154 DA "O3'" O N N 155 DA "C2'" C N N 156 DA "C1'" C N R 157 DA N9 N Y N 158 DA C8 C Y N 159 DA N7 N Y N 160 DA C5 C Y N 161 DA C6 C Y N 162 DA N6 N N N 163 DA N1 N Y N 164 DA C2 C Y N 165 DA N3 N Y N 166 DA C4 C Y N 167 DA HOP3 H N N 168 DA HOP2 H N N 169 DA "H5'" H N N 170 DA "H5''" H N N 171 DA "H4'" H N N 172 DA "H3'" H N N 173 DA "HO3'" H N N 174 DA "H2'" H N N 175 DA "H2''" H N N 176 DA "H1'" H N N 177 DA H8 H N N 178 DA H61 H N N 179 DA H62 H N N 180 DA H2 H N N 181 DC OP3 O N N 182 DC P P N N 183 DC OP1 O N N 184 DC OP2 O N N 185 DC "O5'" O N N 186 DC "C5'" C N N 187 DC "C4'" C N R 188 DC "O4'" O N N 189 DC "C3'" C N S 190 DC "O3'" O N N 191 DC "C2'" C N N 192 DC "C1'" C N R 193 DC N1 N N N 194 DC C2 C N N 195 DC O2 O N N 196 DC N3 N N N 197 DC C4 C N N 198 DC N4 N N N 199 DC C5 C N N 200 DC C6 C N N 201 DC HOP3 H N N 202 DC HOP2 H N N 203 DC "H5'" H N N 204 DC "H5''" H N N 205 DC "H4'" H N N 206 DC "H3'" H N N 207 DC "HO3'" H N N 208 DC "H2'" H N N 209 DC "H2''" H N N 210 DC "H1'" H N N 211 DC H41 H N N 212 DC H42 H N N 213 DC H5 H N N 214 DC H6 H N N 215 DG OP3 O N N 216 DG P P N N 217 DG OP1 O N N 218 DG OP2 O N N 219 DG "O5'" O N N 220 DG "C5'" C N N 221 DG "C4'" C N R 222 DG "O4'" O N N 223 DG "C3'" C N S 224 DG "O3'" O N N 225 DG "C2'" C N N 226 DG "C1'" C N R 227 DG N9 N Y N 228 DG C8 C Y N 229 DG N7 N Y N 230 DG C5 C Y N 231 DG C6 C N N 232 DG O6 O N N 233 DG N1 N N N 234 DG C2 C N N 235 DG N2 N N N 236 DG N3 N N N 237 DG C4 C Y N 238 DG HOP3 H N N 239 DG HOP2 H N N 240 DG "H5'" H N N 241 DG "H5''" H N N 242 DG "H4'" H N N 243 DG "H3'" H N N 244 DG "HO3'" H N N 245 DG "H2'" H N N 246 DG "H2''" H N N 247 DG "H1'" H N N 248 DG H8 H N N 249 DG H1 H N N 250 DG H21 H N N 251 DG H22 H N N 252 DT OP3 O N N 253 DT P P N N 254 DT OP1 O N N 255 DT OP2 O N N 256 DT "O5'" O N N 257 DT "C5'" C N N 258 DT "C4'" C N R 259 DT "O4'" O N N 260 DT "C3'" C N S 261 DT "O3'" O N N 262 DT "C2'" C N N 263 DT "C1'" C N R 264 DT N1 N N N 265 DT C2 C N N 266 DT O2 O N N 267 DT N3 N N N 268 DT C4 C N N 269 DT O4 O N N 270 DT C5 C N N 271 DT C7 C N N 272 DT C6 C N N 273 DT HOP3 H N N 274 DT HOP2 H N N 275 DT "H5'" H N N 276 DT "H5''" H N N 277 DT "H4'" H N N 278 DT "H3'" H N N 279 DT "HO3'" H N N 280 DT "H2'" H N N 281 DT "H2''" H N N 282 DT "H1'" H N N 283 DT H3 H N N 284 DT H71 H N N 285 DT H72 H N N 286 DT H73 H N N 287 DT H6 H N N 288 G OP3 O N N 289 G P P N N 290 G OP1 O N N 291 G OP2 O N N 292 G "O5'" O N N 293 G "C5'" C N N 294 G "C4'" C N R 295 G "O4'" O N N 296 G "C3'" C N S 297 G "O3'" O N N 298 G "C2'" C N R 299 G "O2'" O N N 300 G "C1'" C N R 301 G N9 N Y N 302 G C8 C Y N 303 G N7 N Y N 304 G C5 C Y N 305 G C6 C N N 306 G O6 O N N 307 G N1 N N N 308 G C2 C N N 309 G N2 N N N 310 G N3 N N N 311 G C4 C Y N 312 G HOP3 H N N 313 G HOP2 H N N 314 G "H5'" H N N 315 G "H5''" H N N 316 G "H4'" H N N 317 G "H3'" H N N 318 G "HO3'" H N N 319 G "H2'" H N N 320 G "HO2'" H N N 321 G "H1'" H N N 322 G H8 H N N 323 G H1 H N N 324 G H21 H N N 325 G H22 H N N 326 GLN N N N N 327 GLN CA C N S 328 GLN C C N N 329 GLN O O N N 330 GLN CB C N N 331 GLN CG C N N 332 GLN CD C N N 333 GLN OE1 O N N 334 GLN NE2 N N N 335 GLN OXT O N N 336 GLN H H N N 337 GLN H2 H N N 338 GLN HA H N N 339 GLN HB2 H N N 340 GLN HB3 H N N 341 GLN HG2 H N N 342 GLN HG3 H N N 343 GLN HE21 H N N 344 GLN HE22 H N N 345 GLN HXT H N N 346 GLU N N N N 347 GLU CA C N S 348 GLU C C N N 349 GLU O O N N 350 GLU CB C N N 351 GLU CG C N N 352 GLU CD C N N 353 GLU OE1 O N N 354 GLU OE2 O N N 355 GLU OXT O N N 356 GLU H H N N 357 GLU H2 H N N 358 GLU HA H N N 359 GLU HB2 H N N 360 GLU HB3 H N N 361 GLU HG2 H N N 362 GLU HG3 H N N 363 GLU HE2 H N N 364 GLU HXT H N N 365 GLY N N N N 366 GLY CA C N N 367 GLY C C N N 368 GLY O O N N 369 GLY OXT O N N 370 GLY H H N N 371 GLY H2 H N N 372 GLY HA2 H N N 373 GLY HA3 H N N 374 GLY HXT H N N 375 HIS N N N N 376 HIS CA C N S 377 HIS C C N N 378 HIS O O N N 379 HIS CB C N N 380 HIS CG C Y N 381 HIS ND1 N Y N 382 HIS CD2 C Y N 383 HIS CE1 C Y N 384 HIS NE2 N Y N 385 HIS OXT O N N 386 HIS H H N N 387 HIS H2 H N N 388 HIS HA H N N 389 HIS HB2 H N N 390 HIS HB3 H N N 391 HIS HD1 H N N 392 HIS HD2 H N N 393 HIS HE1 H N N 394 HIS HE2 H N N 395 HIS HXT H N N 396 HOH O O N N 397 HOH H1 H N N 398 HOH H2 H N N 399 ILE N N N N 400 ILE CA C N S 401 ILE C C N N 402 ILE O O N N 403 ILE CB C N S 404 ILE CG1 C N N 405 ILE CG2 C N N 406 ILE CD1 C N N 407 ILE OXT O N N 408 ILE H H N N 409 ILE H2 H N N 410 ILE HA H N N 411 ILE HB H N N 412 ILE HG12 H N N 413 ILE HG13 H N N 414 ILE HG21 H N N 415 ILE HG22 H N N 416 ILE HG23 H N N 417 ILE HD11 H N N 418 ILE HD12 H N N 419 ILE HD13 H N N 420 ILE HXT H N N 421 LEU N N N N 422 LEU CA C N S 423 LEU C C N N 424 LEU O O N N 425 LEU CB C N N 426 LEU CG C N N 427 LEU CD1 C N N 428 LEU CD2 C N N 429 LEU OXT O N N 430 LEU H H N N 431 LEU H2 H N N 432 LEU HA H N N 433 LEU HB2 H N N 434 LEU HB3 H N N 435 LEU HG H N N 436 LEU HD11 H N N 437 LEU HD12 H N N 438 LEU HD13 H N N 439 LEU HD21 H N N 440 LEU HD22 H N N 441 LEU HD23 H N N 442 LEU HXT H N N 443 LYS N N N N 444 LYS CA C N S 445 LYS C C N N 446 LYS O O N N 447 LYS CB C N N 448 LYS CG C N N 449 LYS CD C N N 450 LYS CE C N N 451 LYS NZ N N N 452 LYS OXT O N N 453 LYS H H N N 454 LYS H2 H N N 455 LYS HA H N N 456 LYS HB2 H N N 457 LYS HB3 H N N 458 LYS HG2 H N N 459 LYS HG3 H N N 460 LYS HD2 H N N 461 LYS HD3 H N N 462 LYS HE2 H N N 463 LYS HE3 H N N 464 LYS HZ1 H N N 465 LYS HZ2 H N N 466 LYS HZ3 H N N 467 LYS HXT H N N 468 MET N N N N 469 MET CA C N S 470 MET C C N N 471 MET O O N N 472 MET CB C N N 473 MET CG C N N 474 MET SD S N N 475 MET CE C N N 476 MET OXT O N N 477 MET H H N N 478 MET H2 H N N 479 MET HA H N N 480 MET HB2 H N N 481 MET HB3 H N N 482 MET HG2 H N N 483 MET HG3 H N N 484 MET HE1 H N N 485 MET HE2 H N N 486 MET HE3 H N N 487 MET HXT H N N 488 MG MG MG N N 489 PHE N N N N 490 PHE CA C N S 491 PHE C C N N 492 PHE O O N N 493 PHE CB C N N 494 PHE CG C Y N 495 PHE CD1 C Y N 496 PHE CD2 C Y N 497 PHE CE1 C Y N 498 PHE CE2 C Y N 499 PHE CZ C Y N 500 PHE OXT O N N 501 PHE H H N N 502 PHE H2 H N N 503 PHE HA H N N 504 PHE HB2 H N N 505 PHE HB3 H N N 506 PHE HD1 H N N 507 PHE HD2 H N N 508 PHE HE1 H N N 509 PHE HE2 H N N 510 PHE HZ H N N 511 PHE HXT H N N 512 PRO N N N N 513 PRO CA C N S 514 PRO C C N N 515 PRO O O N N 516 PRO CB C N N 517 PRO CG C N N 518 PRO CD C N N 519 PRO OXT O N N 520 PRO H H N N 521 PRO HA H N N 522 PRO HB2 H N N 523 PRO HB3 H N N 524 PRO HG2 H N N 525 PRO HG3 H N N 526 PRO HD2 H N N 527 PRO HD3 H N N 528 PRO HXT H N N 529 SER N N N N 530 SER CA C N S 531 SER C C N N 532 SER O O N N 533 SER CB C N N 534 SER OG O N N 535 SER OXT O N N 536 SER H H N N 537 SER H2 H N N 538 SER HA H N N 539 SER HB2 H N N 540 SER HB3 H N N 541 SER HG H N N 542 SER HXT H N N 543 THR N N N N 544 THR CA C N S 545 THR C C N N 546 THR O O N N 547 THR CB C N R 548 THR OG1 O N N 549 THR CG2 C N N 550 THR OXT O N N 551 THR H H N N 552 THR H2 H N N 553 THR HA H N N 554 THR HB H N N 555 THR HG1 H N N 556 THR HG21 H N N 557 THR HG22 H N N 558 THR HG23 H N N 559 THR HXT H N N 560 TRP N N N N 561 TRP CA C N S 562 TRP C C N N 563 TRP O O N N 564 TRP CB C N N 565 TRP CG C Y N 566 TRP CD1 C Y N 567 TRP CD2 C Y N 568 TRP NE1 N Y N 569 TRP CE2 C Y N 570 TRP CE3 C Y N 571 TRP CZ2 C Y N 572 TRP CZ3 C Y N 573 TRP CH2 C Y N 574 TRP OXT O N N 575 TRP H H N N 576 TRP H2 H N N 577 TRP HA H N N 578 TRP HB2 H N N 579 TRP HB3 H N N 580 TRP HD1 H N N 581 TRP HE1 H N N 582 TRP HE3 H N N 583 TRP HZ2 H N N 584 TRP HZ3 H N N 585 TRP HH2 H N N 586 TRP HXT H N N 587 TYR N N N N 588 TYR CA C N S 589 TYR C C N N 590 TYR O O N N 591 TYR CB C N N 592 TYR CG C Y N 593 TYR CD1 C Y N 594 TYR CD2 C Y N 595 TYR CE1 C Y N 596 TYR CE2 C Y N 597 TYR CZ C Y N 598 TYR OH O N N 599 TYR OXT O N N 600 TYR H H N N 601 TYR H2 H N N 602 TYR HA H N N 603 TYR HB2 H N N 604 TYR HB3 H N N 605 TYR HD1 H N N 606 TYR HD2 H N N 607 TYR HE1 H N N 608 TYR HE2 H N N 609 TYR HH H N N 610 TYR HXT H N N 611 U OP3 O N N 612 U P P N N 613 U OP1 O N N 614 U OP2 O N N 615 U "O5'" O N N 616 U "C5'" C N N 617 U "C4'" C N R 618 U "O4'" O N N 619 U "C3'" C N S 620 U "O3'" O N N 621 U "C2'" C N R 622 U "O2'" O N N 623 U "C1'" C N R 624 U N1 N N N 625 U C2 C N N 626 U O2 O N N 627 U N3 N N N 628 U C4 C N N 629 U O4 O N N 630 U C5 C N N 631 U C6 C N N 632 U HOP3 H N N 633 U HOP2 H N N 634 U "H5'" H N N 635 U "H5''" H N N 636 U "H4'" H N N 637 U "H3'" H N N 638 U "HO3'" H N N 639 U "H2'" H N N 640 U "HO2'" H N N 641 U "H1'" H N N 642 U H3 H N N 643 U H5 H N N 644 U H6 H N N 645 VAL N N N N 646 VAL CA C N S 647 VAL C C N N 648 VAL O O N N 649 VAL CB C N N 650 VAL CG1 C N N 651 VAL CG2 C N N 652 VAL OXT O N N 653 VAL H H N N 654 VAL H2 H N N 655 VAL HA H N N 656 VAL HB H N N 657 VAL HG11 H N N 658 VAL HG12 H N N 659 VAL HG13 H N N 660 VAL HG21 H N N 661 VAL HG22 H N N 662 VAL HG23 H N N 663 VAL HXT H N N 664 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 DA OP3 P sing N N 145 DA OP3 HOP3 sing N N 146 DA P OP1 doub N N 147 DA P OP2 sing N N 148 DA P "O5'" sing N N 149 DA OP2 HOP2 sing N N 150 DA "O5'" "C5'" sing N N 151 DA "C5'" "C4'" sing N N 152 DA "C5'" "H5'" sing N N 153 DA "C5'" "H5''" sing N N 154 DA "C4'" "O4'" sing N N 155 DA "C4'" "C3'" sing N N 156 DA "C4'" "H4'" sing N N 157 DA "O4'" "C1'" sing N N 158 DA "C3'" "O3'" sing N N 159 DA "C3'" "C2'" sing N N 160 DA "C3'" "H3'" sing N N 161 DA "O3'" "HO3'" sing N N 162 DA "C2'" "C1'" sing N N 163 DA "C2'" "H2'" sing N N 164 DA "C2'" "H2''" sing N N 165 DA "C1'" N9 sing N N 166 DA "C1'" "H1'" sing N N 167 DA N9 C8 sing Y N 168 DA N9 C4 sing Y N 169 DA C8 N7 doub Y N 170 DA C8 H8 sing N N 171 DA N7 C5 sing Y N 172 DA C5 C6 sing Y N 173 DA C5 C4 doub Y N 174 DA C6 N6 sing N N 175 DA C6 N1 doub Y N 176 DA N6 H61 sing N N 177 DA N6 H62 sing N N 178 DA N1 C2 sing Y N 179 DA C2 N3 doub Y N 180 DA C2 H2 sing N N 181 DA N3 C4 sing Y N 182 DC OP3 P sing N N 183 DC OP3 HOP3 sing N N 184 DC P OP1 doub N N 185 DC P OP2 sing N N 186 DC P "O5'" sing N N 187 DC OP2 HOP2 sing N N 188 DC "O5'" "C5'" sing N N 189 DC "C5'" "C4'" sing N N 190 DC "C5'" "H5'" sing N N 191 DC "C5'" "H5''" sing N N 192 DC "C4'" "O4'" sing N N 193 DC "C4'" "C3'" sing N N 194 DC "C4'" "H4'" sing N N 195 DC "O4'" "C1'" sing N N 196 DC "C3'" "O3'" sing N N 197 DC "C3'" "C2'" sing N N 198 DC "C3'" "H3'" sing N N 199 DC "O3'" "HO3'" sing N N 200 DC "C2'" "C1'" sing N N 201 DC "C2'" "H2'" sing N N 202 DC "C2'" "H2''" sing N N 203 DC "C1'" N1 sing N N 204 DC "C1'" "H1'" sing N N 205 DC N1 C2 sing N N 206 DC N1 C6 sing N N 207 DC C2 O2 doub N N 208 DC C2 N3 sing N N 209 DC N3 C4 doub N N 210 DC C4 N4 sing N N 211 DC C4 C5 sing N N 212 DC N4 H41 sing N N 213 DC N4 H42 sing N N 214 DC C5 C6 doub N N 215 DC C5 H5 sing N N 216 DC C6 H6 sing N N 217 DG OP3 P sing N N 218 DG OP3 HOP3 sing N N 219 DG P OP1 doub N N 220 DG P OP2 sing N N 221 DG P "O5'" sing N N 222 DG OP2 HOP2 sing N N 223 DG "O5'" "C5'" sing N N 224 DG "C5'" "C4'" sing N N 225 DG "C5'" "H5'" sing N N 226 DG "C5'" "H5''" sing N N 227 DG "C4'" "O4'" sing N N 228 DG "C4'" "C3'" sing N N 229 DG "C4'" "H4'" sing N N 230 DG "O4'" "C1'" sing N N 231 DG "C3'" "O3'" sing N N 232 DG "C3'" "C2'" sing N N 233 DG "C3'" "H3'" sing N N 234 DG "O3'" "HO3'" sing N N 235 DG "C2'" "C1'" sing N N 236 DG "C2'" "H2'" sing N N 237 DG "C2'" "H2''" sing N N 238 DG "C1'" N9 sing N N 239 DG "C1'" "H1'" sing N N 240 DG N9 C8 sing Y N 241 DG N9 C4 sing Y N 242 DG C8 N7 doub Y N 243 DG C8 H8 sing N N 244 DG N7 C5 sing Y N 245 DG C5 C6 sing N N 246 DG C5 C4 doub Y N 247 DG C6 O6 doub N N 248 DG C6 N1 sing N N 249 DG N1 C2 sing N N 250 DG N1 H1 sing N N 251 DG C2 N2 sing N N 252 DG C2 N3 doub N N 253 DG N2 H21 sing N N 254 DG N2 H22 sing N N 255 DG N3 C4 sing N N 256 DT OP3 P sing N N 257 DT OP3 HOP3 sing N N 258 DT P OP1 doub N N 259 DT P OP2 sing N N 260 DT P "O5'" sing N N 261 DT OP2 HOP2 sing N N 262 DT "O5'" "C5'" sing N N 263 DT "C5'" "C4'" sing N N 264 DT "C5'" "H5'" sing N N 265 DT "C5'" "H5''" sing N N 266 DT "C4'" "O4'" sing N N 267 DT "C4'" "C3'" sing N N 268 DT "C4'" "H4'" sing N N 269 DT "O4'" "C1'" sing N N 270 DT "C3'" "O3'" sing N N 271 DT "C3'" "C2'" sing N N 272 DT "C3'" "H3'" sing N N 273 DT "O3'" "HO3'" sing N N 274 DT "C2'" "C1'" sing N N 275 DT "C2'" "H2'" sing N N 276 DT "C2'" "H2''" sing N N 277 DT "C1'" N1 sing N N 278 DT "C1'" "H1'" sing N N 279 DT N1 C2 sing N N 280 DT N1 C6 sing N N 281 DT C2 O2 doub N N 282 DT C2 N3 sing N N 283 DT N3 C4 sing N N 284 DT N3 H3 sing N N 285 DT C4 O4 doub N N 286 DT C4 C5 sing N N 287 DT C5 C7 sing N N 288 DT C5 C6 doub N N 289 DT C7 H71 sing N N 290 DT C7 H72 sing N N 291 DT C7 H73 sing N N 292 DT C6 H6 sing N N 293 G OP3 P sing N N 294 G OP3 HOP3 sing N N 295 G P OP1 doub N N 296 G P OP2 sing N N 297 G P "O5'" sing N N 298 G OP2 HOP2 sing N N 299 G "O5'" "C5'" sing N N 300 G "C5'" "C4'" sing N N 301 G "C5'" "H5'" sing N N 302 G "C5'" "H5''" sing N N 303 G "C4'" "O4'" sing N N 304 G "C4'" "C3'" sing N N 305 G "C4'" "H4'" sing N N 306 G "O4'" "C1'" sing N N 307 G "C3'" "O3'" sing N N 308 G "C3'" "C2'" sing N N 309 G "C3'" "H3'" sing N N 310 G "O3'" "HO3'" sing N N 311 G "C2'" "O2'" sing N N 312 G "C2'" "C1'" sing N N 313 G "C2'" "H2'" sing N N 314 G "O2'" "HO2'" sing N N 315 G "C1'" N9 sing N N 316 G "C1'" "H1'" sing N N 317 G N9 C8 sing Y N 318 G N9 C4 sing Y N 319 G C8 N7 doub Y N 320 G C8 H8 sing N N 321 G N7 C5 sing Y N 322 G C5 C6 sing N N 323 G C5 C4 doub Y N 324 G C6 O6 doub N N 325 G C6 N1 sing N N 326 G N1 C2 sing N N 327 G N1 H1 sing N N 328 G C2 N2 sing N N 329 G C2 N3 doub N N 330 G N2 H21 sing N N 331 G N2 H22 sing N N 332 G N3 C4 sing N N 333 GLN N CA sing N N 334 GLN N H sing N N 335 GLN N H2 sing N N 336 GLN CA C sing N N 337 GLN CA CB sing N N 338 GLN CA HA sing N N 339 GLN C O doub N N 340 GLN C OXT sing N N 341 GLN CB CG sing N N 342 GLN CB HB2 sing N N 343 GLN CB HB3 sing N N 344 GLN CG CD sing N N 345 GLN CG HG2 sing N N 346 GLN CG HG3 sing N N 347 GLN CD OE1 doub N N 348 GLN CD NE2 sing N N 349 GLN NE2 HE21 sing N N 350 GLN NE2 HE22 sing N N 351 GLN OXT HXT sing N N 352 GLU N CA sing N N 353 GLU N H sing N N 354 GLU N H2 sing N N 355 GLU CA C sing N N 356 GLU CA CB sing N N 357 GLU CA HA sing N N 358 GLU C O doub N N 359 GLU C OXT sing N N 360 GLU CB CG sing N N 361 GLU CB HB2 sing N N 362 GLU CB HB3 sing N N 363 GLU CG CD sing N N 364 GLU CG HG2 sing N N 365 GLU CG HG3 sing N N 366 GLU CD OE1 doub N N 367 GLU CD OE2 sing N N 368 GLU OE2 HE2 sing N N 369 GLU OXT HXT sing N N 370 GLY N CA sing N N 371 GLY N H sing N N 372 GLY N H2 sing N N 373 GLY CA C sing N N 374 GLY CA HA2 sing N N 375 GLY CA HA3 sing N N 376 GLY C O doub N N 377 GLY C OXT sing N N 378 GLY OXT HXT sing N N 379 HIS N CA sing N N 380 HIS N H sing N N 381 HIS N H2 sing N N 382 HIS CA C sing N N 383 HIS CA CB sing N N 384 HIS CA HA sing N N 385 HIS C O doub N N 386 HIS C OXT sing N N 387 HIS CB CG sing N N 388 HIS CB HB2 sing N N 389 HIS CB HB3 sing N N 390 HIS CG ND1 sing Y N 391 HIS CG CD2 doub Y N 392 HIS ND1 CE1 doub Y N 393 HIS ND1 HD1 sing N N 394 HIS CD2 NE2 sing Y N 395 HIS CD2 HD2 sing N N 396 HIS CE1 NE2 sing Y N 397 HIS CE1 HE1 sing N N 398 HIS NE2 HE2 sing N N 399 HIS OXT HXT sing N N 400 HOH O H1 sing N N 401 HOH O H2 sing N N 402 ILE N CA sing N N 403 ILE N H sing N N 404 ILE N H2 sing N N 405 ILE CA C sing N N 406 ILE CA CB sing N N 407 ILE CA HA sing N N 408 ILE C O doub N N 409 ILE C OXT sing N N 410 ILE CB CG1 sing N N 411 ILE CB CG2 sing N N 412 ILE CB HB sing N N 413 ILE CG1 CD1 sing N N 414 ILE CG1 HG12 sing N N 415 ILE CG1 HG13 sing N N 416 ILE CG2 HG21 sing N N 417 ILE CG2 HG22 sing N N 418 ILE CG2 HG23 sing N N 419 ILE CD1 HD11 sing N N 420 ILE CD1 HD12 sing N N 421 ILE CD1 HD13 sing N N 422 ILE OXT HXT sing N N 423 LEU N CA sing N N 424 LEU N H sing N N 425 LEU N H2 sing N N 426 LEU CA C sing N N 427 LEU CA CB sing N N 428 LEU CA HA sing N N 429 LEU C O doub N N 430 LEU C OXT sing N N 431 LEU CB CG sing N N 432 LEU CB HB2 sing N N 433 LEU CB HB3 sing N N 434 LEU CG CD1 sing N N 435 LEU CG CD2 sing N N 436 LEU CG HG sing N N 437 LEU CD1 HD11 sing N N 438 LEU CD1 HD12 sing N N 439 LEU CD1 HD13 sing N N 440 LEU CD2 HD21 sing N N 441 LEU CD2 HD22 sing N N 442 LEU CD2 HD23 sing N N 443 LEU OXT HXT sing N N 444 LYS N CA sing N N 445 LYS N H sing N N 446 LYS N H2 sing N N 447 LYS CA C sing N N 448 LYS CA CB sing N N 449 LYS CA HA sing N N 450 LYS C O doub N N 451 LYS C OXT sing N N 452 LYS CB CG sing N N 453 LYS CB HB2 sing N N 454 LYS CB HB3 sing N N 455 LYS CG CD sing N N 456 LYS CG HG2 sing N N 457 LYS CG HG3 sing N N 458 LYS CD CE sing N N 459 LYS CD HD2 sing N N 460 LYS CD HD3 sing N N 461 LYS CE NZ sing N N 462 LYS CE HE2 sing N N 463 LYS CE HE3 sing N N 464 LYS NZ HZ1 sing N N 465 LYS NZ HZ2 sing N N 466 LYS NZ HZ3 sing N N 467 LYS OXT HXT sing N N 468 MET N CA sing N N 469 MET N H sing N N 470 MET N H2 sing N N 471 MET CA C sing N N 472 MET CA CB sing N N 473 MET CA HA sing N N 474 MET C O doub N N 475 MET C OXT sing N N 476 MET CB CG sing N N 477 MET CB HB2 sing N N 478 MET CB HB3 sing N N 479 MET CG SD sing N N 480 MET CG HG2 sing N N 481 MET CG HG3 sing N N 482 MET SD CE sing N N 483 MET CE HE1 sing N N 484 MET CE HE2 sing N N 485 MET CE HE3 sing N N 486 MET OXT HXT sing N N 487 PHE N CA sing N N 488 PHE N H sing N N 489 PHE N H2 sing N N 490 PHE CA C sing N N 491 PHE CA CB sing N N 492 PHE CA HA sing N N 493 PHE C O doub N N 494 PHE C OXT sing N N 495 PHE CB CG sing N N 496 PHE CB HB2 sing N N 497 PHE CB HB3 sing N N 498 PHE CG CD1 doub Y N 499 PHE CG CD2 sing Y N 500 PHE CD1 CE1 sing Y N 501 PHE CD1 HD1 sing N N 502 PHE CD2 CE2 doub Y N 503 PHE CD2 HD2 sing N N 504 PHE CE1 CZ doub Y N 505 PHE CE1 HE1 sing N N 506 PHE CE2 CZ sing Y N 507 PHE CE2 HE2 sing N N 508 PHE CZ HZ sing N N 509 PHE OXT HXT sing N N 510 PRO N CA sing N N 511 PRO N CD sing N N 512 PRO N H sing N N 513 PRO CA C sing N N 514 PRO CA CB sing N N 515 PRO CA HA sing N N 516 PRO C O doub N N 517 PRO C OXT sing N N 518 PRO CB CG sing N N 519 PRO CB HB2 sing N N 520 PRO CB HB3 sing N N 521 PRO CG CD sing N N 522 PRO CG HG2 sing N N 523 PRO CG HG3 sing N N 524 PRO CD HD2 sing N N 525 PRO CD HD3 sing N N 526 PRO OXT HXT sing N N 527 SER N CA sing N N 528 SER N H sing N N 529 SER N H2 sing N N 530 SER CA C sing N N 531 SER CA CB sing N N 532 SER CA HA sing N N 533 SER C O doub N N 534 SER C OXT sing N N 535 SER CB OG sing N N 536 SER CB HB2 sing N N 537 SER CB HB3 sing N N 538 SER OG HG sing N N 539 SER OXT HXT sing N N 540 THR N CA sing N N 541 THR N H sing N N 542 THR N H2 sing N N 543 THR CA C sing N N 544 THR CA CB sing N N 545 THR CA HA sing N N 546 THR C O doub N N 547 THR C OXT sing N N 548 THR CB OG1 sing N N 549 THR CB CG2 sing N N 550 THR CB HB sing N N 551 THR OG1 HG1 sing N N 552 THR CG2 HG21 sing N N 553 THR CG2 HG22 sing N N 554 THR CG2 HG23 sing N N 555 THR OXT HXT sing N N 556 TRP N CA sing N N 557 TRP N H sing N N 558 TRP N H2 sing N N 559 TRP CA C sing N N 560 TRP CA CB sing N N 561 TRP CA HA sing N N 562 TRP C O doub N N 563 TRP C OXT sing N N 564 TRP CB CG sing N N 565 TRP CB HB2 sing N N 566 TRP CB HB3 sing N N 567 TRP CG CD1 doub Y N 568 TRP CG CD2 sing Y N 569 TRP CD1 NE1 sing Y N 570 TRP CD1 HD1 sing N N 571 TRP CD2 CE2 doub Y N 572 TRP CD2 CE3 sing Y N 573 TRP NE1 CE2 sing Y N 574 TRP NE1 HE1 sing N N 575 TRP CE2 CZ2 sing Y N 576 TRP CE3 CZ3 doub Y N 577 TRP CE3 HE3 sing N N 578 TRP CZ2 CH2 doub Y N 579 TRP CZ2 HZ2 sing N N 580 TRP CZ3 CH2 sing Y N 581 TRP CZ3 HZ3 sing N N 582 TRP CH2 HH2 sing N N 583 TRP OXT HXT sing N N 584 TYR N CA sing N N 585 TYR N H sing N N 586 TYR N H2 sing N N 587 TYR CA C sing N N 588 TYR CA CB sing N N 589 TYR CA HA sing N N 590 TYR C O doub N N 591 TYR C OXT sing N N 592 TYR CB CG sing N N 593 TYR CB HB2 sing N N 594 TYR CB HB3 sing N N 595 TYR CG CD1 doub Y N 596 TYR CG CD2 sing Y N 597 TYR CD1 CE1 sing Y N 598 TYR CD1 HD1 sing N N 599 TYR CD2 CE2 doub Y N 600 TYR CD2 HD2 sing N N 601 TYR CE1 CZ doub Y N 602 TYR CE1 HE1 sing N N 603 TYR CE2 CZ sing Y N 604 TYR CE2 HE2 sing N N 605 TYR CZ OH sing N N 606 TYR OH HH sing N N 607 TYR OXT HXT sing N N 608 U OP3 P sing N N 609 U OP3 HOP3 sing N N 610 U P OP1 doub N N 611 U P OP2 sing N N 612 U P "O5'" sing N N 613 U OP2 HOP2 sing N N 614 U "O5'" "C5'" sing N N 615 U "C5'" "C4'" sing N N 616 U "C5'" "H5'" sing N N 617 U "C5'" "H5''" sing N N 618 U "C4'" "O4'" sing N N 619 U "C4'" "C3'" sing N N 620 U "C4'" "H4'" sing N N 621 U "O4'" "C1'" sing N N 622 U "C3'" "O3'" sing N N 623 U "C3'" "C2'" sing N N 624 U "C3'" "H3'" sing N N 625 U "O3'" "HO3'" sing N N 626 U "C2'" "O2'" sing N N 627 U "C2'" "C1'" sing N N 628 U "C2'" "H2'" sing N N 629 U "O2'" "HO2'" sing N N 630 U "C1'" N1 sing N N 631 U "C1'" "H1'" sing N N 632 U N1 C2 sing N N 633 U N1 C6 sing N N 634 U C2 O2 doub N N 635 U C2 N3 sing N N 636 U N3 C4 sing N N 637 U N3 H3 sing N N 638 U C4 O4 doub N N 639 U C4 C5 sing N N 640 U C5 C6 doub N N 641 U C5 H5 sing N N 642 U C6 H6 sing N N 643 VAL N CA sing N N 644 VAL N H sing N N 645 VAL N H2 sing N N 646 VAL CA C sing N N 647 VAL CA CB sing N N 648 VAL CA HA sing N N 649 VAL C O doub N N 650 VAL C OXT sing N N 651 VAL CB CG1 sing N N 652 VAL CB CG2 sing N N 653 VAL CB HB sing N N 654 VAL CG1 HG11 sing N N 655 VAL CG1 HG12 sing N N 656 VAL CG1 HG13 sing N N 657 VAL CG2 HG21 sing N N 658 VAL CG2 HG22 sing N N 659 VAL CG2 HG23 sing N N 660 VAL OXT HXT sing N N 661 # _ndb_struct_conf_na.entry_id 9YK3 _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B C 1 1_555 C DG 6 1_555 0.137 -0.186 -0.074 5.355 -10.638 -2.605 1 B_C1:DG6_C B 1 ? C 6 ? 19 1 1 B G 2 1_555 C DC 5 1_555 -0.281 -0.227 -0.316 -17.523 -15.093 1.287 2 B_G2:DC5_C B 2 ? C 5 ? 19 1 1 B A 3 1_555 C DT 4 1_555 -0.045 -0.204 -0.064 -13.948 -13.003 3.150 3 B_A3:DT4_C B 3 ? C 4 ? 20 1 1 B C 4 1_555 C DG 3 1_555 0.359 -0.174 0.236 -4.111 -13.055 0.080 4 B_C4:DG3_C B 4 ? C 3 ? 19 1 1 B A 5 1_555 C DT 2 1_555 0.161 -0.161 -0.165 -15.847 -7.861 0.262 5 B_A5:DT2_C B 5 ? C 2 ? 20 1 1 B U 6 1_555 C DA 1 1_555 -0.180 -0.275 0.184 -6.461 -3.195 5.271 6 B_U6:DA1_C B 6 ? C 1 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B C 1 1_555 C DG 6 1_555 B G 2 1_555 C DC 5 1_555 0.254 -1.231 3.980 3.024 6.734 36.204 -3.023 0.083 3.709 10.699 -4.804 36.924 1 BB_C1G2:DC5DG6_CC B 1 ? C 6 ? B 2 ? C 5 ? 1 B G 2 1_555 C DC 5 1_555 B A 3 1_555 C DT 4 1_555 0.401 -1.158 3.323 -0.774 3.901 34.784 -2.510 -0.782 3.169 6.500 1.289 35.004 2 BB_G2A3:DT4DC5_CC B 2 ? C 5 ? B 3 ? C 4 ? 1 B A 3 1_555 C DT 4 1_555 B C 4 1_555 C DG 3 1_555 -0.568 -1.184 3.127 -0.386 7.187 29.523 -3.581 1.014 2.775 13.845 0.743 30.368 3 BB_A3C4:DG3DT4_CC B 3 ? C 4 ? B 4 ? C 3 ? 1 B C 4 1_555 C DG 3 1_555 B A 5 1_555 C DT 2 1_555 0.802 -1.864 3.560 6.118 6.819 25.318 -5.836 -0.081 3.069 14.947 -13.412 26.900 4 BB_C4A5:DT2DG3_CC B 4 ? C 3 ? B 5 ? C 2 ? 1 B A 5 1_555 C DT 2 1_555 B U 6 1_555 C DA 1 1_555 0.213 -1.308 3.249 0.657 -3.577 30.986 -1.740 -0.269 3.379 -6.665 -1.225 31.194 5 BB_A5U6:DA1DT2_CC B 5 ? C 2 ? B 6 ? C 1 ? # _pdbx_audit_support.funding_organization 'Not funded' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2G8U _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 9YK3 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.012199 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001306 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026361 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016181 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C MG N O P S # loop_ #