data_9YLM # _entry.id 9YLM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.410 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9YLM pdb_00009ylm 10.2210/pdb9ylm/pdb WWPDB D_1000300725 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2026-03-04 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9YLM _pdbx_database_status.recvd_initial_deposition_date 2025-10-08 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email XCheng5@mdanderson.org _pdbx_contact_author.name_first Xiaodong _pdbx_contact_author.name_last Cheng _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-6967-6362 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Horton, J.R.' 1 ? 'Cheng, X.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Biorxiv _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2692-8205 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Regulation of BCL11A DNA binding and expression in human erythrocyte precursor HUDEP-2 cells' _citation.year 2026 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.64898/2026.02.06.704516 _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yu, M.' 1 ? primary 'Das, P.' 2 ? primary 'Horton, J.R.' 3 ? primary 'Zhou, J.' 4 ? primary 'Lee, J.' 5 ? primary 'Hong, T.' 6 ? primary 'Lu, Y.' 7 ? primary 'Estecio, M.R.' 8 ? primary 'Iakova, P.A.' 9 ? primary 'Jain, A.K.' 10 ? primary 'Sbardella, G.' 11 ? primary 'Xiong, Y.' 12 ? primary 'Jin, J.' 13 ? primary 'Blumenthal, R.M.' 14 ? primary 'Huang, Y.' 15 ? primary 'Zhang, X.' 16 ? primary 'Cheng, X.' 17 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'B-cell lymphoma/leukemia 11A' 12472.312 1 ? ? 'Zinc finger domains 4-6' ? 2 polymer syn 'DNA Strand II' 4015.635 1 ? ? ? ? 3 polymer syn 'DNA Strand I' 3926.573 1 ? ? ? ? 4 non-polymer syn 'ZINC ION' 65.409 3 ? ? ? ? 5 non-polymer syn 1,2-ETHANEDIOL 62.068 2 ? ? ? ? 6 water nat water 18.015 65 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;BCL-11A,B-cell CLL/lymphoma 11A,COUP-TF-interacting protein 1,Ecotropic viral integration site 9 protein homolog,EVI-9,Zinc finger protein 856 ; # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GSPGRPSSKEGRRSDTCEYCGKVFKNCSNLTVHRRSHTGERPYKCELCNYACAQSSKLTRHMKTHGQVGKDVYKCEICKM PFSVYSTLEKHMKKWHSDRVLNNDIKTE ; ;GSPGRPSSKEGRRSDTCEYCGKVFKNCSNLTVHRRSHTGERPYKCELCNYACAQSSKLTRHMKTHGQVGKDVYKCEICKM PFSVYSTLEKHMKKWHSDRVLNNDIKTE ; A ? 2 polydeoxyribonucleotide no no '(DA)(DG)(DA)(DT)(DG)(DG)(DA)(DC)(DA)(DT)(DT)(DC)(DG)' AGATGGACATTCG E ? 3 polydeoxyribonucleotide no no '(DG)(DA)(DA)(DT)(DG)(DT)(DC)(DC)(DA)(DT)(DC)(DT)(DC)' GAATGTCCATCTC F ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'ZINC ION' ZN 5 1,2-ETHANEDIOL EDO 6 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 PRO n 1 4 GLY n 1 5 ARG n 1 6 PRO n 1 7 SER n 1 8 SER n 1 9 LYS n 1 10 GLU n 1 11 GLY n 1 12 ARG n 1 13 ARG n 1 14 SER n 1 15 ASP n 1 16 THR n 1 17 CYS n 1 18 GLU n 1 19 TYR n 1 20 CYS n 1 21 GLY n 1 22 LYS n 1 23 VAL n 1 24 PHE n 1 25 LYS n 1 26 ASN n 1 27 CYS n 1 28 SER n 1 29 ASN n 1 30 LEU n 1 31 THR n 1 32 VAL n 1 33 HIS n 1 34 ARG n 1 35 ARG n 1 36 SER n 1 37 HIS n 1 38 THR n 1 39 GLY n 1 40 GLU n 1 41 ARG n 1 42 PRO n 1 43 TYR n 1 44 LYS n 1 45 CYS n 1 46 GLU n 1 47 LEU n 1 48 CYS n 1 49 ASN n 1 50 TYR n 1 51 ALA n 1 52 CYS n 1 53 ALA n 1 54 GLN n 1 55 SER n 1 56 SER n 1 57 LYS n 1 58 LEU n 1 59 THR n 1 60 ARG n 1 61 HIS n 1 62 MET n 1 63 LYS n 1 64 THR n 1 65 HIS n 1 66 GLY n 1 67 GLN n 1 68 VAL n 1 69 GLY n 1 70 LYS n 1 71 ASP n 1 72 VAL n 1 73 TYR n 1 74 LYS n 1 75 CYS n 1 76 GLU n 1 77 ILE n 1 78 CYS n 1 79 LYS n 1 80 MET n 1 81 PRO n 1 82 PHE n 1 83 SER n 1 84 VAL n 1 85 TYR n 1 86 SER n 1 87 THR n 1 88 LEU n 1 89 GLU n 1 90 LYS n 1 91 HIS n 1 92 MET n 1 93 LYS n 1 94 LYS n 1 95 TRP n 1 96 HIS n 1 97 SER n 1 98 ASP n 1 99 ARG n 1 100 VAL n 1 101 LEU n 1 102 ASN n 1 103 ASN n 1 104 ASP n 1 105 ILE n 1 106 LYS n 1 107 THR n 1 108 GLU n 2 1 DA n 2 2 DG n 2 3 DA n 2 4 DT n 2 5 DG n 2 6 DG n 2 7 DA n 2 8 DC n 2 9 DA n 2 10 DT n 2 11 DT n 2 12 DC n 2 13 DG n 3 1 DG n 3 2 DA n 3 3 DA n 3 4 DT n 3 5 DG n 3 6 DT n 3 7 DC n 3 8 DC n 3 9 DA n 3 10 DT n 3 11 DC n 3 12 DT n 3 13 DC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 108 _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BCL11A, CTIP1, EVI9, KIAA1809, ZNF856' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant 'Gold Plus' _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample 1 13 'Homo sapiens' ? 9606 ? 3 1 sample 1 13 'Homo sapiens' ? 9606 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 728 ? ? ? A . n A 1 2 SER 2 729 ? ? ? A . n A 1 3 PRO 3 730 ? ? ? A . n A 1 4 GLY 4 731 ? ? ? A . n A 1 5 ARG 5 732 ? ? ? A . n A 1 6 PRO 6 733 ? ? ? A . n A 1 7 SER 7 734 ? ? ? A . n A 1 8 SER 8 735 ? ? ? A . n A 1 9 LYS 9 736 ? ? ? A . n A 1 10 GLU 10 737 ? ? ? A . n A 1 11 GLY 11 738 ? ? ? A . n A 1 12 ARG 12 739 ? ? ? A . n A 1 13 ARG 13 740 740 ARG ARG A . n A 1 14 SER 14 741 741 SER SER A . n A 1 15 ASP 15 742 742 ASP ASP A . n A 1 16 THR 16 743 743 THR THR A . n A 1 17 CYS 17 744 744 CYS CYS A . n A 1 18 GLU 18 745 745 GLU GLU A . n A 1 19 TYR 19 746 746 TYR TYR A . n A 1 20 CYS 20 747 747 CYS CYS A . n A 1 21 GLY 21 748 748 GLY GLY A . n A 1 22 LYS 22 749 749 LYS LYS A . n A 1 23 VAL 23 750 750 VAL VAL A . n A 1 24 PHE 24 751 751 PHE PHE A . n A 1 25 LYS 25 752 752 LYS LYS A . n A 1 26 ASN 26 753 753 ASN ASN A . n A 1 27 CYS 27 754 754 CYS CYS A . n A 1 28 SER 28 755 755 SER SER A . n A 1 29 ASN 29 756 756 ASN ASN A . n A 1 30 LEU 30 757 757 LEU LEU A . n A 1 31 THR 31 758 758 THR THR A . n A 1 32 VAL 32 759 759 VAL VAL A . n A 1 33 HIS 33 760 760 HIS HIS A . n A 1 34 ARG 34 761 761 ARG ARG A . n A 1 35 ARG 35 762 762 ARG ARG A . n A 1 36 SER 36 763 763 SER SER A . n A 1 37 HIS 37 764 764 HIS HIS A . n A 1 38 THR 38 765 765 THR THR A . n A 1 39 GLY 39 766 766 GLY GLY A . n A 1 40 GLU 40 767 767 GLU GLU A . n A 1 41 ARG 41 768 768 ARG ARG A . n A 1 42 PRO 42 769 769 PRO PRO A . n A 1 43 TYR 43 770 770 TYR TYR A . n A 1 44 LYS 44 771 771 LYS LYS A . n A 1 45 CYS 45 772 772 CYS CYS A . n A 1 46 GLU 46 773 773 GLU GLU A . n A 1 47 LEU 47 774 774 LEU LEU A . n A 1 48 CYS 48 775 775 CYS CYS A . n A 1 49 ASN 49 776 776 ASN ASN A . n A 1 50 TYR 50 777 777 TYR TYR A . n A 1 51 ALA 51 778 778 ALA ALA A . n A 1 52 CYS 52 779 779 CYS CYS A . n A 1 53 ALA 53 780 780 ALA ALA A . n A 1 54 GLN 54 781 781 GLN GLN A . n A 1 55 SER 55 782 782 SER SER A . n A 1 56 SER 56 783 783 SER SER A . n A 1 57 LYS 57 784 784 LYS LYS A . n A 1 58 LEU 58 785 785 LEU LEU A . n A 1 59 THR 59 786 786 THR THR A . n A 1 60 ARG 60 787 787 ARG ARG A . n A 1 61 HIS 61 788 788 HIS HIS A . n A 1 62 MET 62 789 789 MET MET A . n A 1 63 LYS 63 790 790 LYS LYS A . n A 1 64 THR 64 791 791 THR THR A . n A 1 65 HIS 65 792 792 HIS HIS A . n A 1 66 GLY 66 793 793 GLY GLY A . n A 1 67 GLN 67 794 794 GLN GLN A . n A 1 68 VAL 68 795 795 VAL VAL A . n A 1 69 GLY 69 796 796 GLY GLY A . n A 1 70 LYS 70 797 797 LYS LYS A . n A 1 71 ASP 71 798 798 ASP ASP A . n A 1 72 VAL 72 799 799 VAL VAL A . n A 1 73 TYR 73 800 800 TYR TYR A . n A 1 74 LYS 74 801 801 LYS LYS A . n A 1 75 CYS 75 802 802 CYS CYS A . n A 1 76 GLU 76 803 803 GLU GLU A . n A 1 77 ILE 77 804 804 ILE ILE A . n A 1 78 CYS 78 805 805 CYS CYS A . n A 1 79 LYS 79 806 806 LYS LYS A . n A 1 80 MET 80 807 807 MET MET A . n A 1 81 PRO 81 808 808 PRO PRO A . n A 1 82 PHE 82 809 809 PHE PHE A . n A 1 83 SER 83 810 810 SER SER A . n A 1 84 VAL 84 811 811 VAL VAL A . n A 1 85 TYR 85 812 812 TYR TYR A . n A 1 86 SER 86 813 813 SER SER A . n A 1 87 THR 87 814 814 THR THR A . n A 1 88 LEU 88 815 815 LEU LEU A . n A 1 89 GLU 89 816 816 GLU GLU A . n A 1 90 LYS 90 817 817 LYS LYS A . n A 1 91 HIS 91 818 818 HIS HIS A . n A 1 92 MET 92 819 819 MET MET A . n A 1 93 LYS 93 820 820 LYS LYS A . n A 1 94 LYS 94 821 821 LYS LYS A . n A 1 95 TRP 95 822 822 TRP TRP A . n A 1 96 HIS 96 823 823 HIS HIS A . n A 1 97 SER 97 824 824 SER SER A . n A 1 98 ASP 98 825 ? ? ? A . n A 1 99 ARG 99 826 ? ? ? A . n A 1 100 VAL 100 827 ? ? ? A . n A 1 101 LEU 101 828 ? ? ? A . n A 1 102 ASN 102 829 ? ? ? A . n A 1 103 ASN 103 830 ? ? ? A . n A 1 104 ASP 104 831 ? ? ? A . n A 1 105 ILE 105 832 ? ? ? A . n A 1 106 LYS 106 833 ? ? ? A . n A 1 107 THR 107 834 ? ? ? A . n A 1 108 GLU 108 835 ? ? ? A . n B 2 1 DA 1 1 1 DA DA E . n B 2 2 DG 2 2 2 DG DG E . n B 2 3 DA 3 3 3 DA DA E . n B 2 4 DT 4 4 4 DT DT E . n B 2 5 DG 5 5 5 DG DG E . n B 2 6 DG 6 6 6 DG DG E . n B 2 7 DA 7 7 7 DA DA E . n B 2 8 DC 8 8 8 DC DC E . n B 2 9 DA 9 9 9 DA DA E . n B 2 10 DT 10 10 10 DT DT E . n B 2 11 DT 11 11 11 DT DT E . n B 2 12 DC 12 12 12 DC DC E . n B 2 13 DG 13 13 13 DG DG E . n C 3 1 DG 1 1 1 DG DG F . n C 3 2 DA 2 2 2 DA DA F . n C 3 3 DA 3 3 3 DA DA F . n C 3 4 DT 4 4 4 DT DT F . n C 3 5 DG 5 5 5 DG DG F . n C 3 6 DT 6 6 6 DT DT F . n C 3 7 DC 7 7 7 DC DC F . n C 3 8 DC 8 8 8 DC DC F . n C 3 9 DA 9 9 9 DA DA F . n C 3 10 DT 10 10 10 DT DT F . n C 3 11 DC 11 11 11 DC DC F . n C 3 12 DT 12 12 12 DT DT F . n C 3 13 DC 13 13 13 DC DC F . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZN 1 1001 1001 ZN ZN A . E 4 ZN 1 1002 1002 ZN ZN A . F 4 ZN 1 1003 1003 ZN ZN A . G 5 EDO 1 901 901 EDO EDO E . H 5 EDO 1 902 1101 EDO EDO E . I 6 HOH 1 1101 7 HOH HOH A . I 6 HOH 2 1102 62 HOH HOH A . I 6 HOH 3 1103 165 HOH HOH A . I 6 HOH 4 1104 175 HOH HOH A . I 6 HOH 5 1105 17 HOH HOH A . I 6 HOH 6 1106 151 HOH HOH A . I 6 HOH 7 1107 76 HOH HOH A . I 6 HOH 8 1108 39 HOH HOH A . I 6 HOH 9 1109 27 HOH HOH A . I 6 HOH 10 1110 86 HOH HOH A . I 6 HOH 11 1111 55 HOH HOH A . I 6 HOH 12 1112 8 HOH HOH A . I 6 HOH 13 1113 118 HOH HOH A . I 6 HOH 14 1114 194 HOH HOH A . I 6 HOH 15 1115 168 HOH HOH A . I 6 HOH 16 1116 184 HOH HOH A . I 6 HOH 17 1117 191 HOH HOH A . I 6 HOH 18 1118 5 HOH HOH A . I 6 HOH 19 1119 91 HOH HOH A . I 6 HOH 20 1120 166 HOH HOH A . I 6 HOH 21 1121 185 HOH HOH A . I 6 HOH 22 1122 148 HOH HOH A . I 6 HOH 23 1123 15 HOH HOH A . I 6 HOH 24 1124 150 HOH HOH A . I 6 HOH 25 1125 65 HOH HOH A . I 6 HOH 26 1126 32 HOH HOH A . I 6 HOH 27 1127 23 HOH HOH A . I 6 HOH 28 1128 16 HOH HOH A . I 6 HOH 29 1129 131 HOH HOH A . I 6 HOH 30 1130 164 HOH HOH A . I 6 HOH 31 1131 146 HOH HOH A . I 6 HOH 32 1132 163 HOH HOH A . I 6 HOH 33 1133 68 HOH HOH A . I 6 HOH 34 1134 161 HOH HOH A . J 6 HOH 1 1001 2 HOH HOH E . J 6 HOH 2 1002 33 HOH HOH E . J 6 HOH 3 1003 144 HOH HOH E . J 6 HOH 4 1004 188 HOH HOH E . J 6 HOH 5 1005 171 HOH HOH E . J 6 HOH 6 1006 26 HOH HOH E . J 6 HOH 7 1007 179 HOH HOH E . J 6 HOH 8 1008 190 HOH HOH E . J 6 HOH 9 1009 193 HOH HOH E . J 6 HOH 10 1010 192 HOH HOH E . J 6 HOH 11 1011 181 HOH HOH E . J 6 HOH 12 1012 178 HOH HOH E . J 6 HOH 13 1013 98 HOH HOH E . J 6 HOH 14 1014 160 HOH HOH E . J 6 HOH 15 1015 167 HOH HOH E . J 6 HOH 16 1016 186 HOH HOH E . J 6 HOH 17 1017 140 HOH HOH E . K 6 HOH 1 101 136 HOH HOH F . K 6 HOH 2 102 9 HOH HOH F . K 6 HOH 3 103 189 HOH HOH F . K 6 HOH 4 104 13 HOH HOH F . K 6 HOH 5 105 187 HOH HOH F . K 6 HOH 6 106 59 HOH HOH F . K 6 HOH 7 107 46 HOH HOH F . K 6 HOH 8 108 77 HOH HOH F . K 6 HOH 9 109 24 HOH HOH F . K 6 HOH 10 110 50 HOH HOH F . K 6 HOH 11 111 162 HOH HOH F . K 6 HOH 12 112 195 HOH HOH F . K 6 HOH 13 113 173 HOH HOH F . K 6 HOH 14 114 196 HOH HOH F . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 752 ? CG ? A LYS 25 CG 2 1 Y 1 A LYS 752 ? CD ? A LYS 25 CD 3 1 Y 1 A LYS 752 ? CE ? A LYS 25 CE 4 1 Y 1 A LYS 752 ? NZ ? A LYS 25 NZ 5 1 Y 1 A GLN 794 ? CG ? A GLN 67 CG 6 1 Y 1 A GLN 794 ? CD ? A GLN 67 CD 7 1 Y 1 A GLN 794 ? OE1 ? A GLN 67 OE1 8 1 Y 1 A GLN 794 ? NE2 ? A GLN 67 NE2 9 1 Y 1 A VAL 795 ? CG1 ? A VAL 68 CG1 10 1 Y 1 A VAL 795 ? CG2 ? A VAL 68 CG2 11 1 Y 1 A ASP 798 ? CG ? A ASP 71 CG 12 1 Y 1 A ASP 798 ? OD1 ? A ASP 71 OD1 13 1 Y 1 A ASP 798 ? OD2 ? A ASP 71 OD2 14 1 Y 1 A VAL 799 ? CG1 ? A VAL 72 CG1 15 1 Y 1 A VAL 799 ? CG2 ? A VAL 72 CG2 16 1 Y 1 A GLU 803 ? CG ? A GLU 76 CG 17 1 Y 1 A GLU 803 ? CD ? A GLU 76 CD 18 1 Y 1 A GLU 803 ? OE1 ? A GLU 76 OE1 19 1 Y 1 A GLU 803 ? OE2 ? A GLU 76 OE2 20 1 Y 1 A LYS 820 ? CG ? A LYS 93 CG 21 1 Y 1 A LYS 820 ? CD ? A LYS 93 CD 22 1 Y 1 A LYS 820 ? CE ? A LYS 93 CE 23 1 Y 1 A LYS 820 ? NZ ? A LYS 93 NZ # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_reference_DOI _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.21.2_5419 ? 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? autoPROC ? ? ? . ? 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? STARANISO ? ? ? . ? 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . ? 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 9YLM _cell.details ? _cell.formula_units_Z ? _cell.length_a 56.617 _cell.length_a_esd ? _cell.length_b 56.617 _cell.length_b_esd ? _cell.length_c 154.831 _cell.length_c_esd ? _cell.volume 496308.400 _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9YLM _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall 'P 4abw 2nw' _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9YLM _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.04 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 59.53 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 5.2 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '28 % w/v PEG 4000, 0.1 M Sodium citrate (pH 5.2), 0.2 M Ammonium acetate' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 292 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 9M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2025-02-14 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.92017 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'NSLS-II BEAMLINE 17-ID-1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.92017 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 17-ID-1 _diffrn_source.pdbx_synchrotron_site NSLS-II # _reflns.B_iso_Wilson_estimate 38.32 _reflns.entry_id 9YLM _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.91 _reflns.d_resolution_low 31.95 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 14526 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 71.0 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 13 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 14.1 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.028 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.988 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.093 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.91 _reflns_shell.d_res_low 2.15 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.4 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 726 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.622 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.554 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 52.51 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9YLM _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.91 _refine.ls_d_res_low 31.95 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 14504 _refine.ls_number_reflns_R_free 691 _refine.ls_number_reflns_R_work 13813 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 70.89 _refine.ls_percent_reflns_R_free 4.76 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2068 _refine.ls_R_factor_R_free 0.2441 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2050 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 32.5941 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.2583 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.91 _refine_hist.d_res_low 31.95 _refine_hist.number_atoms_solvent 65 _refine_hist.number_atoms_total 1270 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 667 _refine_hist.pdbx_number_atoms_nucleic_acid 527 _refine_hist.pdbx_number_atoms_ligand 11 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0037 ? 1279 ? f_bond_d ? ? ? 'X-RAY DIFFRACTION' ? 0.5526 ? 1826 ? f_angle_d ? ? ? 'X-RAY DIFFRACTION' ? 0.0353 ? 197 ? f_chiral_restr ? ? ? 'X-RAY DIFFRACTION' ? 0.0034 ? 140 ? f_plane_restr ? ? ? 'X-RAY DIFFRACTION' ? 23.9138 ? 531 ? f_dihedral_angle_d ? ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.correlation_coeff_Fo_to_Fc _refine_ls_shell.correlation_coeff_Fo_to_Fc_free _refine_ls_shell.correlation_coeff_I_to_Fcsqd_work _refine_ls_shell.correlation_coeff_I_to_Fcsqd_free _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 1.91 2.05 . . 16 250 6.68 . . . . 0.3567 . . . . . . . . . . . . . . . 0.3527 'X-RAY DIFFRACTION' 2.06 2.26 . . 94 1719 45.12 . . . . 0.3119 . . . . . . . . . . . . . . . 0.3781 'X-RAY DIFFRACTION' 2.26 2.59 . . 176 3854 99.63 . . . . 0.2771 . . . . . . . . . . . . . . . 0.3004 'X-RAY DIFFRACTION' 2.59 3.26 . . 207 3857 99.75 . . . . 0.2270 . . . . . . . . . . . . . . . 0.2702 'X-RAY DIFFRACTION' 3.26 31.95 . . 198 4133 99.75 . . . . 0.1713 . . . . . . . . . . . . . . . 0.2071 # _struct.entry_id 9YLM _struct.title 'BCL11A ZF4-6 in Complex with a DNA Sequence Observed in the Human Globin Locus Containing Motif TGTCCA (12-mer)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9YLM _struct_keywords.text 'TRANSCRIPTION FACTOR, DNA BINDING, TRANSCRIPTION, TRANSCRIPTION-DNA COMPLEX, GLOBIN LOCUS, DNA BINDING PROTEIN' _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 5 ? H N N 5 ? I N N 6 ? J N N 6 ? K N N 6 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP BC11A_HUMAN Q9H165 ? 1 ;PGRPSSKEGRRSDTCEYCGKVFKNCSNLTVHRRSHTGERPYKCELCNYACAQSSKLTRHMKTHGQVGKDVYKCEICKMPF SVYSTLEKHMKKWHSDRVLNNDIKTE ; 730 2 PDB 9YLM 9YLM ? 2 ? 1 3 PDB 9YLM 9YLM ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9YLM A 3 ? 108 ? Q9H165 730 ? 835 ? 730 835 2 2 9YLM E 1 ? 13 ? 9YLM 1 ? 13 ? 1 13 3 3 9YLM F 1 ? 13 ? 9YLM 1 ? 13 ? 1 13 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 9YLM GLY A 1 ? UNP Q9H165 ? ? 'expression tag' 728 1 1 9YLM SER A 2 ? UNP Q9H165 ? ? 'expression tag' 729 2 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'fluorescence resonance energy transfer' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASN A 26 ? GLY A 39 ? ASN A 753 GLY A 766 1 ? 14 HELX_P HELX_P2 AA2 GLN A 54 ? LYS A 63 ? GLN A 781 LYS A 790 1 ? 10 HELX_P HELX_P3 AA3 THR A 64 ? GLY A 66 ? THR A 791 GLY A 793 5 ? 3 HELX_P HELX_P4 AA4 VAL A 84 ? HIS A 96 ? VAL A 811 HIS A 823 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A CYS 17 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 744 A ZN 1001 1_555 ? ? ? ? ? ? ? 2.290 ? ? metalc2 metalc ? ? A CYS 20 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 747 A ZN 1001 1_555 ? ? ? ? ? ? ? 2.297 ? ? metalc3 metalc ? ? A HIS 33 NE2 ? ? ? 1_555 D ZN . ZN ? ? A HIS 760 A ZN 1001 1_555 ? ? ? ? ? ? ? 2.026 ? ? metalc4 metalc ? ? A HIS 37 NE2 ? ? ? 1_555 D ZN . ZN ? ? A HIS 764 A ZN 1001 1_555 ? ? ? ? ? ? ? 2.024 ? ? metalc5 metalc ? ? A CYS 45 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 772 A ZN 1002 1_555 ? ? ? ? ? ? ? 2.285 ? ? metalc6 metalc ? ? A CYS 48 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 775 A ZN 1002 1_555 ? ? ? ? ? ? ? 2.252 ? ? metalc7 metalc ? ? A HIS 61 NE2 ? ? ? 1_555 E ZN . ZN ? ? A HIS 788 A ZN 1002 1_555 ? ? ? ? ? ? ? 2.031 ? ? metalc8 metalc ? ? A HIS 65 NE2 ? ? ? 1_555 E ZN . ZN ? ? A HIS 792 A ZN 1002 1_555 ? ? ? ? ? ? ? 2.009 ? ? metalc9 metalc ? ? A CYS 75 SG ? ? ? 1_555 F ZN . ZN ? ? A CYS 802 A ZN 1003 1_555 ? ? ? ? ? ? ? 2.289 ? ? metalc10 metalc ? ? A CYS 78 SG ? ? ? 1_555 F ZN . ZN ? ? A CYS 805 A ZN 1003 1_555 ? ? ? ? ? ? ? 2.288 ? ? metalc11 metalc ? ? A HIS 91 NE2 ? ? ? 1_555 F ZN . ZN ? ? A HIS 818 A ZN 1003 1_555 ? ? ? ? ? ? ? 2.034 ? ? metalc12 metalc ? ? A HIS 96 NE2 ? ? ? 1_555 F ZN . ZN ? ? A HIS 823 A ZN 1003 1_555 ? ? ? ? ? ? ? 2.026 ? ? hydrog1 hydrog ? ? B DA 1 N1 ? ? ? 1_555 C DT 12 N3 ? ? E DA 1 F DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DA 1 N6 ? ? ? 1_555 C DT 12 O4 ? ? E DA 1 F DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DG 2 N1 ? ? ? 1_555 C DC 11 N3 ? ? E DG 2 F DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DG 2 N2 ? ? ? 1_555 C DC 11 O2 ? ? E DG 2 F DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DG 2 O6 ? ? ? 1_555 C DC 11 N4 ? ? E DG 2 F DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DA 3 N1 ? ? ? 1_555 C DT 10 N3 ? ? E DA 3 F DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DA 3 N6 ? ? ? 1_555 C DT 10 O4 ? ? E DA 3 F DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DT 4 N3 ? ? ? 1_555 C DA 9 N1 ? ? E DT 4 F DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DT 4 O4 ? ? ? 1_555 C DA 9 N6 ? ? E DT 4 F DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DG 5 N1 ? ? ? 1_555 C DC 8 N3 ? ? E DG 5 F DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DG 5 N2 ? ? ? 1_555 C DC 8 O2 ? ? E DG 5 F DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DG 5 O6 ? ? ? 1_555 C DC 8 N4 ? ? E DG 5 F DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DG 6 N1 ? ? ? 1_555 C DC 7 N3 ? ? E DG 6 F DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DG 6 N2 ? ? ? 1_555 C DC 7 O2 ? ? E DG 6 F DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DG 6 O6 ? ? ? 1_555 C DC 7 N4 ? ? E DG 6 F DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DA 7 N1 ? ? ? 1_555 C DT 6 N3 ? ? E DA 7 F DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DA 7 N6 ? ? ? 1_555 C DT 6 O4 ? ? E DA 7 F DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DC 8 N3 ? ? ? 1_555 C DG 5 N1 ? ? E DC 8 F DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DC 8 N4 ? ? ? 1_555 C DG 5 O6 ? ? E DC 8 F DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DC 8 O2 ? ? ? 1_555 C DG 5 N2 ? ? E DC 8 F DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DA 9 N1 ? ? ? 1_555 C DT 4 N3 ? ? E DA 9 F DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DA 9 N6 ? ? ? 1_555 C DT 4 O4 ? ? E DA 9 F DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DT 10 N3 ? ? ? 1_555 C DA 3 N1 ? ? E DT 10 F DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DT 10 O4 ? ? ? 1_555 C DA 3 N6 ? ? E DT 10 F DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DT 11 O2 ? ? ? 1_555 B DG 13 N1 ? ? E DT 11 E DG 13 1_555 ? ? ? ? ? ? 'DT-DG MISPAIR' ? ? ? hydrog26 hydrog ? ? B DT 11 N3 ? ? ? 1_555 C DA 2 N1 ? ? E DT 11 F DA 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DT 11 O4 ? ? ? 1_555 C DA 2 N6 ? ? E DT 11 F DA 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DC 12 N3 ? ? ? 1_555 C DG 1 N1 ? ? E DC 12 F DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DC 12 N4 ? ? ? 1_555 C DG 1 O6 ? ? E DC 12 F DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B DC 12 O2 ? ? ? 1_555 C DG 1 N2 ? ? E DC 12 F DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B DG 13 N1 ? ? ? 1_555 C DA 3 N3 ? ? E DG 13 F DA 3 1_555 ? ? ? ? ? ? 'DG-DA MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 17 ? A CYS 744 ? 1_555 ZN ? D ZN . ? A ZN 1001 ? 1_555 SG ? A CYS 20 ? A CYS 747 ? 1_555 116.4 ? 2 SG ? A CYS 17 ? A CYS 744 ? 1_555 ZN ? D ZN . ? A ZN 1001 ? 1_555 NE2 ? A HIS 33 ? A HIS 760 ? 1_555 102.8 ? 3 SG ? A CYS 20 ? A CYS 747 ? 1_555 ZN ? D ZN . ? A ZN 1001 ? 1_555 NE2 ? A HIS 33 ? A HIS 760 ? 1_555 108.5 ? 4 SG ? A CYS 17 ? A CYS 744 ? 1_555 ZN ? D ZN . ? A ZN 1001 ? 1_555 NE2 ? A HIS 37 ? A HIS 764 ? 1_555 105.0 ? 5 SG ? A CYS 20 ? A CYS 747 ? 1_555 ZN ? D ZN . ? A ZN 1001 ? 1_555 NE2 ? A HIS 37 ? A HIS 764 ? 1_555 117.5 ? 6 NE2 ? A HIS 33 ? A HIS 760 ? 1_555 ZN ? D ZN . ? A ZN 1001 ? 1_555 NE2 ? A HIS 37 ? A HIS 764 ? 1_555 105.0 ? 7 SG ? A CYS 45 ? A CYS 772 ? 1_555 ZN ? E ZN . ? A ZN 1002 ? 1_555 SG ? A CYS 48 ? A CYS 775 ? 1_555 125.0 ? 8 SG ? A CYS 45 ? A CYS 772 ? 1_555 ZN ? E ZN . ? A ZN 1002 ? 1_555 NE2 ? A HIS 61 ? A HIS 788 ? 1_555 99.2 ? 9 SG ? A CYS 48 ? A CYS 775 ? 1_555 ZN ? E ZN . ? A ZN 1002 ? 1_555 NE2 ? A HIS 61 ? A HIS 788 ? 1_555 105.8 ? 10 SG ? A CYS 45 ? A CYS 772 ? 1_555 ZN ? E ZN . ? A ZN 1002 ? 1_555 NE2 ? A HIS 65 ? A HIS 792 ? 1_555 100.8 ? 11 SG ? A CYS 48 ? A CYS 775 ? 1_555 ZN ? E ZN . ? A ZN 1002 ? 1_555 NE2 ? A HIS 65 ? A HIS 792 ? 1_555 119.7 ? 12 NE2 ? A HIS 61 ? A HIS 788 ? 1_555 ZN ? E ZN . ? A ZN 1002 ? 1_555 NE2 ? A HIS 65 ? A HIS 792 ? 1_555 102.5 ? 13 SG ? A CYS 75 ? A CYS 802 ? 1_555 ZN ? F ZN . ? A ZN 1003 ? 1_555 SG ? A CYS 78 ? A CYS 805 ? 1_555 113.5 ? 14 SG ? A CYS 75 ? A CYS 802 ? 1_555 ZN ? F ZN . ? A ZN 1003 ? 1_555 NE2 ? A HIS 91 ? A HIS 818 ? 1_555 105.8 ? 15 SG ? A CYS 78 ? A CYS 805 ? 1_555 ZN ? F ZN . ? A ZN 1003 ? 1_555 NE2 ? A HIS 91 ? A HIS 818 ? 1_555 101.9 ? 16 SG ? A CYS 75 ? A CYS 802 ? 1_555 ZN ? F ZN . ? A ZN 1003 ? 1_555 NE2 ? A HIS 96 ? A HIS 823 ? 1_555 100.2 ? 17 SG ? A CYS 78 ? A CYS 805 ? 1_555 ZN ? F ZN . ? A ZN 1003 ? 1_555 NE2 ? A HIS 96 ? A HIS 823 ? 1_555 127.3 ? 18 NE2 ? A HIS 91 ? A HIS 818 ? 1_555 ZN ? F ZN . ? A ZN 1003 ? 1_555 NE2 ? A HIS 96 ? A HIS 823 ? 1_555 106.5 ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 TYR A 43 ? LYS A 44 ? TYR A 770 LYS A 771 AA1 2 ALA A 51 ? CYS A 52 ? ALA A 778 CYS A 779 AA2 1 TYR A 73 ? LYS A 74 ? TYR A 800 LYS A 801 AA2 2 PRO A 81 ? PHE A 82 ? PRO A 808 PHE A 809 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N TYR A 43 ? N TYR A 770 O CYS A 52 ? O CYS A 779 AA2 1 2 N TYR A 73 ? N TYR A 800 O PHE A 82 ? O PHE A 809 # _pdbx_entry_details.entry_id 9YLM _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.has_protein_modification N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O4'" _pdbx_validate_rmsd_angle.auth_asym_id_1 E _pdbx_validate_rmsd_angle.auth_comp_id_1 DG _pdbx_validate_rmsd_angle.auth_seq_id_1 5 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C1'" _pdbx_validate_rmsd_angle.auth_asym_id_2 E _pdbx_validate_rmsd_angle.auth_comp_id_2 DG _pdbx_validate_rmsd_angle.auth_seq_id_2 5 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 N9 _pdbx_validate_rmsd_angle.auth_asym_id_3 E _pdbx_validate_rmsd_angle.auth_comp_id_3 DG _pdbx_validate_rmsd_angle.auth_seq_id_3 5 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 110.51 _pdbx_validate_rmsd_angle.angle_target_value 108.30 _pdbx_validate_rmsd_angle.angle_deviation 2.21 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.30 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id F _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 114 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id K _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -y+1/2,x+1/2,z+1/4 3 y+1/2,-x+1/2,z+3/4 4 x+1/2,-y+1/2,-z+3/4 5 -x+1/2,y+1/2,-z+1/4 6 -x,-y,z+1/2 7 y,x,-z 8 -y,-x,-z+1/2 # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined 7.90298354813 9.86907702336 27.5008631867 0.41258057519 ? 0.0141895185879 ? -0.0118471563953 ? 0.242203077799 ? 0.0137895612793 ? 0.280712013414 ? 7.21658857388 ? 3.43465396954 ? 2.17242426331 ? 4.71638967021 ? 0.0862697389833 ? 7.05911180939 ? 0.087148708963 ? -0.435588676489 ? 0.690981910172 ? 0.596825640736 ? 0.0834994935182 ? 0.0819439973793 ? -0.381764264222 ? -0.448545428005 ? -0.170285133329 ? 2 'X-RAY DIFFRACTION' ? refined 4.97642479701 -6.80851557903 18.1455491714 0.396550877784 ? -0.0134414001574 ? -0.0319713013129 ? 0.204381401508 ? 0.0813165401108 ? 0.187970518861 ? 3.99654542435 ? 1.96947745958 ? 1.28834038311 ? 7.54964807605 ? 5.79313178532 ? 6.61933695817 ? 0.0468613490547 ? 0.00452912330812 ? -0.447716578855 ? 0.292662525591 ? 0.229726703434 ? -0.318663308831 ? -0.197094929273 ? -0.0717093075358 ? -0.274679183822 ? 3 'X-RAY DIFFRACTION' ? refined -1.68251368175 -17.8118953008 10.0273483361 0.64842058868 ? -0.117569752765 ? -0.123429887267 ? 0.650814329357 ? -0.0675646220011 ? 0.940034490523 ? 6.33008326335 ? -6.88256484597 ? -4.94032571684 ? 7.89227883942 ? 6.16720085258 ? 5.38140033465 ? -0.0103618594444 ? -0.180173736545 ? -3.4571244993 ? -0.152663774319 ? -0.771533531613 ? 2.06939474072 ? 0.540127260565 ? -2.03010314353 ? 0.918908385358 ? 4 'X-RAY DIFFRACTION' ? refined 8.19783712492 -13.7893657547 3.84285001322 0.471419217254 ? 0.0327861599843 ? -0.0722660365487 ? 0.36631613674 ? -0.00981723898644 ? 0.310208352394 ? 3.90660927131 ? -5.68243546025 ? -1.90025000219 ? 9.02565708158 ? 1.50797972741 ? 7.61055090238 ? 0.25132727025 ? 1.36027520398 ? 0.0143653548815 ? -0.65991866016 ? -0.510627012239 ? -0.251612958532 ? -0.334794120283 ? -0.0284109207898 ? 0.198317928222 ? 5 'X-RAY DIFFRACTION' ? refined -1.46772009152 2.71707164464 18.1788796079 0.549459166505 ? 0.00380529167299 ? -0.0452758389261 ? 0.404684601135 ? 0.0323578746434 ? 0.279642258302 ? 6.00398419298 ? 0.0234323544033 ? -1.9815031743 ? 6.15068185009 ? -0.425018348649 ? 8.7307777047 ? 0.365607437727 ? -0.185391587122 ? 0.291421525237 ? -0.340646735343 ? 0.191708234937 ? 0.186758346259 ? -0.268566084199 ? -0.312844893678 ? -0.497254413662 ? 6 'X-RAY DIFFRACTION' ? refined -3.45918042148 2.1684006035 20.7842514254 0.595209287849 ? 0.0621840069641 ? -0.00641134883217 ? 0.557638483425 ? 0.0944857509892 ? 0.274384448116 ? 3.33428300503 ? -1.04913583428 ? -0.031726615059 ? 2.91264421955 ? 0.0225485274085 ? 3.32275831497 ? 0.281576853468 ? -0.395228564229 ? 0.0140540527789 ? 0.00125444608053 ? 0.127430200959 ? 0.302772993027 ? 0.0670898561125 ? -0.857655886055 ? -0.335887204523 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 A 1 A 740 ? A 31 A 770 ? ? ;chain 'A' and (resid 740 through 770 ) ; 2 'X-RAY DIFFRACTION' 2 A 32 A 771 ? A 52 A 791 ? ? ;chain 'A' and (resid 771 through 791 ) ; 3 'X-RAY DIFFRACTION' 3 A 53 A 792 ? A 62 A 801 ? ? ;chain 'A' and (resid 792 through 801 ) ; 4 'X-RAY DIFFRACTION' 4 A 63 A 802 ? A 85 A 824 ? ? ;chain 'A' and (resid 802 through 824 ) ; 5 'X-RAY DIFFRACTION' 5 B ? E 1 ? B ? E 13 ? ? ;chain 'E' and (resid 1 through 13 ) ; 6 'X-RAY DIFFRACTION' 6 C ? F 1 ? C ? F 13 ? ? ;chain 'F' and (resid 1 through 13 ) ; # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 728 ? A GLY 1 2 1 Y 1 A SER 729 ? A SER 2 3 1 Y 1 A PRO 730 ? A PRO 3 4 1 Y 1 A GLY 731 ? A GLY 4 5 1 Y 1 A ARG 732 ? A ARG 5 6 1 Y 1 A PRO 733 ? A PRO 6 7 1 Y 1 A SER 734 ? A SER 7 8 1 Y 1 A SER 735 ? A SER 8 9 1 Y 1 A LYS 736 ? A LYS 9 10 1 Y 1 A GLU 737 ? A GLU 10 11 1 Y 1 A GLY 738 ? A GLY 11 12 1 Y 1 A ARG 739 ? A ARG 12 13 1 Y 1 A ASP 825 ? A ASP 98 14 1 Y 1 A ARG 826 ? A ARG 99 15 1 Y 1 A VAL 827 ? A VAL 100 16 1 Y 1 A LEU 828 ? A LEU 101 17 1 Y 1 A ASN 829 ? A ASN 102 18 1 Y 1 A ASN 830 ? A ASN 103 19 1 Y 1 A ASP 831 ? A ASP 104 20 1 Y 1 A ILE 832 ? A ILE 105 21 1 Y 1 A LYS 833 ? A LYS 106 22 1 Y 1 A THR 834 ? A THR 107 23 1 Y 1 A GLU 835 ? A GLU 108 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 EDO C1 C N N 231 EDO O1 O N N 232 EDO C2 C N N 233 EDO O2 O N N 234 EDO H11 H N N 235 EDO H12 H N N 236 EDO HO1 H N N 237 EDO H21 H N N 238 EDO H22 H N N 239 EDO HO2 H N N 240 GLN N N N N 241 GLN CA C N S 242 GLN C C N N 243 GLN O O N N 244 GLN CB C N N 245 GLN CG C N N 246 GLN CD C N N 247 GLN OE1 O N N 248 GLN NE2 N N N 249 GLN OXT O N N 250 GLN H H N N 251 GLN H2 H N N 252 GLN HA H N N 253 GLN HB2 H N N 254 GLN HB3 H N N 255 GLN HG2 H N N 256 GLN HG3 H N N 257 GLN HE21 H N N 258 GLN HE22 H N N 259 GLN HXT H N N 260 GLU N N N N 261 GLU CA C N S 262 GLU C C N N 263 GLU O O N N 264 GLU CB C N N 265 GLU CG C N N 266 GLU CD C N N 267 GLU OE1 O N N 268 GLU OE2 O N N 269 GLU OXT O N N 270 GLU H H N N 271 GLU H2 H N N 272 GLU HA H N N 273 GLU HB2 H N N 274 GLU HB3 H N N 275 GLU HG2 H N N 276 GLU HG3 H N N 277 GLU HE2 H N N 278 GLU HXT H N N 279 GLY N N N N 280 GLY CA C N N 281 GLY C C N N 282 GLY O O N N 283 GLY OXT O N N 284 GLY H H N N 285 GLY H2 H N N 286 GLY HA2 H N N 287 GLY HA3 H N N 288 GLY HXT H N N 289 HIS N N N N 290 HIS CA C N S 291 HIS C C N N 292 HIS O O N N 293 HIS CB C N N 294 HIS CG C Y N 295 HIS ND1 N Y N 296 HIS CD2 C Y N 297 HIS CE1 C Y N 298 HIS NE2 N Y N 299 HIS OXT O N N 300 HIS H H N N 301 HIS H2 H N N 302 HIS HA H N N 303 HIS HB2 H N N 304 HIS HB3 H N N 305 HIS HD1 H N N 306 HIS HD2 H N N 307 HIS HE1 H N N 308 HIS HE2 H N N 309 HIS HXT H N N 310 HOH O O N N 311 HOH H1 H N N 312 HOH H2 H N N 313 ILE N N N N 314 ILE CA C N S 315 ILE C C N N 316 ILE O O N N 317 ILE CB C N S 318 ILE CG1 C N N 319 ILE CG2 C N N 320 ILE CD1 C N N 321 ILE OXT O N N 322 ILE H H N N 323 ILE H2 H N N 324 ILE HA H N N 325 ILE HB H N N 326 ILE HG12 H N N 327 ILE HG13 H N N 328 ILE HG21 H N N 329 ILE HG22 H N N 330 ILE HG23 H N N 331 ILE HD11 H N N 332 ILE HD12 H N N 333 ILE HD13 H N N 334 ILE HXT H N N 335 LEU N N N N 336 LEU CA C N S 337 LEU C C N N 338 LEU O O N N 339 LEU CB C N N 340 LEU CG C N N 341 LEU CD1 C N N 342 LEU CD2 C N N 343 LEU OXT O N N 344 LEU H H N N 345 LEU H2 H N N 346 LEU HA H N N 347 LEU HB2 H N N 348 LEU HB3 H N N 349 LEU HG H N N 350 LEU HD11 H N N 351 LEU HD12 H N N 352 LEU HD13 H N N 353 LEU HD21 H N N 354 LEU HD22 H N N 355 LEU HD23 H N N 356 LEU HXT H N N 357 LYS N N N N 358 LYS CA C N S 359 LYS C C N N 360 LYS O O N N 361 LYS CB C N N 362 LYS CG C N N 363 LYS CD C N N 364 LYS CE C N N 365 LYS NZ N N N 366 LYS OXT O N N 367 LYS H H N N 368 LYS H2 H N N 369 LYS HA H N N 370 LYS HB2 H N N 371 LYS HB3 H N N 372 LYS HG2 H N N 373 LYS HG3 H N N 374 LYS HD2 H N N 375 LYS HD3 H N N 376 LYS HE2 H N N 377 LYS HE3 H N N 378 LYS HZ1 H N N 379 LYS HZ2 H N N 380 LYS HZ3 H N N 381 LYS HXT H N N 382 MET N N N N 383 MET CA C N S 384 MET C C N N 385 MET O O N N 386 MET CB C N N 387 MET CG C N N 388 MET SD S N N 389 MET CE C N N 390 MET OXT O N N 391 MET H H N N 392 MET H2 H N N 393 MET HA H N N 394 MET HB2 H N N 395 MET HB3 H N N 396 MET HG2 H N N 397 MET HG3 H N N 398 MET HE1 H N N 399 MET HE2 H N N 400 MET HE3 H N N 401 MET HXT H N N 402 PHE N N N N 403 PHE CA C N S 404 PHE C C N N 405 PHE O O N N 406 PHE CB C N N 407 PHE CG C Y N 408 PHE CD1 C Y N 409 PHE CD2 C Y N 410 PHE CE1 C Y N 411 PHE CE2 C Y N 412 PHE CZ C Y N 413 PHE OXT O N N 414 PHE H H N N 415 PHE H2 H N N 416 PHE HA H N N 417 PHE HB2 H N N 418 PHE HB3 H N N 419 PHE HD1 H N N 420 PHE HD2 H N N 421 PHE HE1 H N N 422 PHE HE2 H N N 423 PHE HZ H N N 424 PHE HXT H N N 425 PRO N N N N 426 PRO CA C N S 427 PRO C C N N 428 PRO O O N N 429 PRO CB C N N 430 PRO CG C N N 431 PRO CD C N N 432 PRO OXT O N N 433 PRO H H N N 434 PRO HA H N N 435 PRO HB2 H N N 436 PRO HB3 H N N 437 PRO HG2 H N N 438 PRO HG3 H N N 439 PRO HD2 H N N 440 PRO HD3 H N N 441 PRO HXT H N N 442 SER N N N N 443 SER CA C N S 444 SER C C N N 445 SER O O N N 446 SER CB C N N 447 SER OG O N N 448 SER OXT O N N 449 SER H H N N 450 SER H2 H N N 451 SER HA H N N 452 SER HB2 H N N 453 SER HB3 H N N 454 SER HG H N N 455 SER HXT H N N 456 THR N N N N 457 THR CA C N S 458 THR C C N N 459 THR O O N N 460 THR CB C N R 461 THR OG1 O N N 462 THR CG2 C N N 463 THR OXT O N N 464 THR H H N N 465 THR H2 H N N 466 THR HA H N N 467 THR HB H N N 468 THR HG1 H N N 469 THR HG21 H N N 470 THR HG22 H N N 471 THR HG23 H N N 472 THR HXT H N N 473 TRP N N N N 474 TRP CA C N S 475 TRP C C N N 476 TRP O O N N 477 TRP CB C N N 478 TRP CG C Y N 479 TRP CD1 C Y N 480 TRP CD2 C Y N 481 TRP NE1 N Y N 482 TRP CE2 C Y N 483 TRP CE3 C Y N 484 TRP CZ2 C Y N 485 TRP CZ3 C Y N 486 TRP CH2 C Y N 487 TRP OXT O N N 488 TRP H H N N 489 TRP H2 H N N 490 TRP HA H N N 491 TRP HB2 H N N 492 TRP HB3 H N N 493 TRP HD1 H N N 494 TRP HE1 H N N 495 TRP HE3 H N N 496 TRP HZ2 H N N 497 TRP HZ3 H N N 498 TRP HH2 H N N 499 TRP HXT H N N 500 TYR N N N N 501 TYR CA C N S 502 TYR C C N N 503 TYR O O N N 504 TYR CB C N N 505 TYR CG C Y N 506 TYR CD1 C Y N 507 TYR CD2 C Y N 508 TYR CE1 C Y N 509 TYR CE2 C Y N 510 TYR CZ C Y N 511 TYR OH O N N 512 TYR OXT O N N 513 TYR H H N N 514 TYR H2 H N N 515 TYR HA H N N 516 TYR HB2 H N N 517 TYR HB3 H N N 518 TYR HD1 H N N 519 TYR HD2 H N N 520 TYR HE1 H N N 521 TYR HE2 H N N 522 TYR HH H N N 523 TYR HXT H N N 524 VAL N N N N 525 VAL CA C N S 526 VAL C C N N 527 VAL O O N N 528 VAL CB C N N 529 VAL CG1 C N N 530 VAL CG2 C N N 531 VAL OXT O N N 532 VAL H H N N 533 VAL H2 H N N 534 VAL HA H N N 535 VAL HB H N N 536 VAL HG11 H N N 537 VAL HG12 H N N 538 VAL HG13 H N N 539 VAL HG21 H N N 540 VAL HG22 H N N 541 VAL HG23 H N N 542 VAL HXT H N N 543 ZN ZN ZN N N 544 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 EDO C1 O1 sing N N 232 EDO C1 C2 sing N N 233 EDO C1 H11 sing N N 234 EDO C1 H12 sing N N 235 EDO O1 HO1 sing N N 236 EDO C2 O2 sing N N 237 EDO C2 H21 sing N N 238 EDO C2 H22 sing N N 239 EDO O2 HO2 sing N N 240 GLN N CA sing N N 241 GLN N H sing N N 242 GLN N H2 sing N N 243 GLN CA C sing N N 244 GLN CA CB sing N N 245 GLN CA HA sing N N 246 GLN C O doub N N 247 GLN C OXT sing N N 248 GLN CB CG sing N N 249 GLN CB HB2 sing N N 250 GLN CB HB3 sing N N 251 GLN CG CD sing N N 252 GLN CG HG2 sing N N 253 GLN CG HG3 sing N N 254 GLN CD OE1 doub N N 255 GLN CD NE2 sing N N 256 GLN NE2 HE21 sing N N 257 GLN NE2 HE22 sing N N 258 GLN OXT HXT sing N N 259 GLU N CA sing N N 260 GLU N H sing N N 261 GLU N H2 sing N N 262 GLU CA C sing N N 263 GLU CA CB sing N N 264 GLU CA HA sing N N 265 GLU C O doub N N 266 GLU C OXT sing N N 267 GLU CB CG sing N N 268 GLU CB HB2 sing N N 269 GLU CB HB3 sing N N 270 GLU CG CD sing N N 271 GLU CG HG2 sing N N 272 GLU CG HG3 sing N N 273 GLU CD OE1 doub N N 274 GLU CD OE2 sing N N 275 GLU OE2 HE2 sing N N 276 GLU OXT HXT sing N N 277 GLY N CA sing N N 278 GLY N H sing N N 279 GLY N H2 sing N N 280 GLY CA C sing N N 281 GLY CA HA2 sing N N 282 GLY CA HA3 sing N N 283 GLY C O doub N N 284 GLY C OXT sing N N 285 GLY OXT HXT sing N N 286 HIS N CA sing N N 287 HIS N H sing N N 288 HIS N H2 sing N N 289 HIS CA C sing N N 290 HIS CA CB sing N N 291 HIS CA HA sing N N 292 HIS C O doub N N 293 HIS C OXT sing N N 294 HIS CB CG sing N N 295 HIS CB HB2 sing N N 296 HIS CB HB3 sing N N 297 HIS CG ND1 sing Y N 298 HIS CG CD2 doub Y N 299 HIS ND1 CE1 doub Y N 300 HIS ND1 HD1 sing N N 301 HIS CD2 NE2 sing Y N 302 HIS CD2 HD2 sing N N 303 HIS CE1 NE2 sing Y N 304 HIS CE1 HE1 sing N N 305 HIS NE2 HE2 sing N N 306 HIS OXT HXT sing N N 307 HOH O H1 sing N N 308 HOH O H2 sing N N 309 ILE N CA sing N N 310 ILE N H sing N N 311 ILE N H2 sing N N 312 ILE CA C sing N N 313 ILE CA CB sing N N 314 ILE CA HA sing N N 315 ILE C O doub N N 316 ILE C OXT sing N N 317 ILE CB CG1 sing N N 318 ILE CB CG2 sing N N 319 ILE CB HB sing N N 320 ILE CG1 CD1 sing N N 321 ILE CG1 HG12 sing N N 322 ILE CG1 HG13 sing N N 323 ILE CG2 HG21 sing N N 324 ILE CG2 HG22 sing N N 325 ILE CG2 HG23 sing N N 326 ILE CD1 HD11 sing N N 327 ILE CD1 HD12 sing N N 328 ILE CD1 HD13 sing N N 329 ILE OXT HXT sing N N 330 LEU N CA sing N N 331 LEU N H sing N N 332 LEU N H2 sing N N 333 LEU CA C sing N N 334 LEU CA CB sing N N 335 LEU CA HA sing N N 336 LEU C O doub N N 337 LEU C OXT sing N N 338 LEU CB CG sing N N 339 LEU CB HB2 sing N N 340 LEU CB HB3 sing N N 341 LEU CG CD1 sing N N 342 LEU CG CD2 sing N N 343 LEU CG HG sing N N 344 LEU CD1 HD11 sing N N 345 LEU CD1 HD12 sing N N 346 LEU CD1 HD13 sing N N 347 LEU CD2 HD21 sing N N 348 LEU CD2 HD22 sing N N 349 LEU CD2 HD23 sing N N 350 LEU OXT HXT sing N N 351 LYS N CA sing N N 352 LYS N H sing N N 353 LYS N H2 sing N N 354 LYS CA C sing N N 355 LYS CA CB sing N N 356 LYS CA HA sing N N 357 LYS C O doub N N 358 LYS C OXT sing N N 359 LYS CB CG sing N N 360 LYS CB HB2 sing N N 361 LYS CB HB3 sing N N 362 LYS CG CD sing N N 363 LYS CG HG2 sing N N 364 LYS CG HG3 sing N N 365 LYS CD CE sing N N 366 LYS CD HD2 sing N N 367 LYS CD HD3 sing N N 368 LYS CE NZ sing N N 369 LYS CE HE2 sing N N 370 LYS CE HE3 sing N N 371 LYS NZ HZ1 sing N N 372 LYS NZ HZ2 sing N N 373 LYS NZ HZ3 sing N N 374 LYS OXT HXT sing N N 375 MET N CA sing N N 376 MET N H sing N N 377 MET N H2 sing N N 378 MET CA C sing N N 379 MET CA CB sing N N 380 MET CA HA sing N N 381 MET C O doub N N 382 MET C OXT sing N N 383 MET CB CG sing N N 384 MET CB HB2 sing N N 385 MET CB HB3 sing N N 386 MET CG SD sing N N 387 MET CG HG2 sing N N 388 MET CG HG3 sing N N 389 MET SD CE sing N N 390 MET CE HE1 sing N N 391 MET CE HE2 sing N N 392 MET CE HE3 sing N N 393 MET OXT HXT sing N N 394 PHE N CA sing N N 395 PHE N H sing N N 396 PHE N H2 sing N N 397 PHE CA C sing N N 398 PHE CA CB sing N N 399 PHE CA HA sing N N 400 PHE C O doub N N 401 PHE C OXT sing N N 402 PHE CB CG sing N N 403 PHE CB HB2 sing N N 404 PHE CB HB3 sing N N 405 PHE CG CD1 doub Y N 406 PHE CG CD2 sing Y N 407 PHE CD1 CE1 sing Y N 408 PHE CD1 HD1 sing N N 409 PHE CD2 CE2 doub Y N 410 PHE CD2 HD2 sing N N 411 PHE CE1 CZ doub Y N 412 PHE CE1 HE1 sing N N 413 PHE CE2 CZ sing Y N 414 PHE CE2 HE2 sing N N 415 PHE CZ HZ sing N N 416 PHE OXT HXT sing N N 417 PRO N CA sing N N 418 PRO N CD sing N N 419 PRO N H sing N N 420 PRO CA C sing N N 421 PRO CA CB sing N N 422 PRO CA HA sing N N 423 PRO C O doub N N 424 PRO C OXT sing N N 425 PRO CB CG sing N N 426 PRO CB HB2 sing N N 427 PRO CB HB3 sing N N 428 PRO CG CD sing N N 429 PRO CG HG2 sing N N 430 PRO CG HG3 sing N N 431 PRO CD HD2 sing N N 432 PRO CD HD3 sing N N 433 PRO OXT HXT sing N N 434 SER N CA sing N N 435 SER N H sing N N 436 SER N H2 sing N N 437 SER CA C sing N N 438 SER CA CB sing N N 439 SER CA HA sing N N 440 SER C O doub N N 441 SER C OXT sing N N 442 SER CB OG sing N N 443 SER CB HB2 sing N N 444 SER CB HB3 sing N N 445 SER OG HG sing N N 446 SER OXT HXT sing N N 447 THR N CA sing N N 448 THR N H sing N N 449 THR N H2 sing N N 450 THR CA C sing N N 451 THR CA CB sing N N 452 THR CA HA sing N N 453 THR C O doub N N 454 THR C OXT sing N N 455 THR CB OG1 sing N N 456 THR CB CG2 sing N N 457 THR CB HB sing N N 458 THR OG1 HG1 sing N N 459 THR CG2 HG21 sing N N 460 THR CG2 HG22 sing N N 461 THR CG2 HG23 sing N N 462 THR OXT HXT sing N N 463 TRP N CA sing N N 464 TRP N H sing N N 465 TRP N H2 sing N N 466 TRP CA C sing N N 467 TRP CA CB sing N N 468 TRP CA HA sing N N 469 TRP C O doub N N 470 TRP C OXT sing N N 471 TRP CB CG sing N N 472 TRP CB HB2 sing N N 473 TRP CB HB3 sing N N 474 TRP CG CD1 doub Y N 475 TRP CG CD2 sing Y N 476 TRP CD1 NE1 sing Y N 477 TRP CD1 HD1 sing N N 478 TRP CD2 CE2 doub Y N 479 TRP CD2 CE3 sing Y N 480 TRP NE1 CE2 sing Y N 481 TRP NE1 HE1 sing N N 482 TRP CE2 CZ2 sing Y N 483 TRP CE3 CZ3 doub Y N 484 TRP CE3 HE3 sing N N 485 TRP CZ2 CH2 doub Y N 486 TRP CZ2 HZ2 sing N N 487 TRP CZ3 CH2 sing Y N 488 TRP CZ3 HZ3 sing N N 489 TRP CH2 HH2 sing N N 490 TRP OXT HXT sing N N 491 TYR N CA sing N N 492 TYR N H sing N N 493 TYR N H2 sing N N 494 TYR CA C sing N N 495 TYR CA CB sing N N 496 TYR CA HA sing N N 497 TYR C O doub N N 498 TYR C OXT sing N N 499 TYR CB CG sing N N 500 TYR CB HB2 sing N N 501 TYR CB HB3 sing N N 502 TYR CG CD1 doub Y N 503 TYR CG CD2 sing Y N 504 TYR CD1 CE1 sing Y N 505 TYR CD1 HD1 sing N N 506 TYR CD2 CE2 doub Y N 507 TYR CD2 HD2 sing N N 508 TYR CE1 CZ doub Y N 509 TYR CE1 HE1 sing N N 510 TYR CE2 CZ sing Y N 511 TYR CE2 HE2 sing N N 512 TYR CZ OH sing N N 513 TYR OH HH sing N N 514 TYR OXT HXT sing N N 515 VAL N CA sing N N 516 VAL N H sing N N 517 VAL N H2 sing N N 518 VAL CA C sing N N 519 VAL CA CB sing N N 520 VAL CA HA sing N N 521 VAL C O doub N N 522 VAL C OXT sing N N 523 VAL CB CG1 sing N N 524 VAL CB CG2 sing N N 525 VAL CB HB sing N N 526 VAL CG1 HG11 sing N N 527 VAL CG1 HG12 sing N N 528 VAL CG1 HG13 sing N N 529 VAL CG2 HG21 sing N N 530 VAL CG2 HG22 sing N N 531 VAL CG2 HG23 sing N N 532 VAL OXT HXT sing N N 533 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 9YLM 'double helix' 9YLM 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DA 1 1_555 C DT 12 1_555 -0.194 -0.193 -0.198 -10.999 -6.819 -0.430 1 E_DA1:DT12_F E 1 ? F 12 ? 20 1 1 B DG 2 1_555 C DC 11 1_555 -0.303 -0.108 -0.125 -4.999 -10.396 0.438 2 E_DG2:DC11_F E 2 ? F 11 ? 19 1 1 B DA 3 1_555 C DT 10 1_555 0.154 -0.028 -0.013 -11.474 -8.385 5.159 3 E_DA3:DT10_F E 3 ? F 10 ? 20 1 1 B DT 4 1_555 C DA 9 1_555 -0.383 0.007 0.103 -2.801 -5.896 3.124 4 E_DT4:DA9_F E 4 ? F 9 ? 20 1 1 B DG 5 1_555 C DC 8 1_555 -0.163 -0.151 0.065 4.163 0.718 -0.725 5 E_DG5:DC8_F E 5 ? F 8 ? 19 1 1 B DG 6 1_555 C DC 7 1_555 -0.145 -0.124 -0.078 2.255 -7.616 -0.408 6 E_DG6:DC7_F E 6 ? F 7 ? 19 1 1 B DA 7 1_555 C DT 6 1_555 0.291 -0.045 -0.031 1.240 0.345 -1.783 7 E_DA7:DT6_F E 7 ? F 6 ? 20 1 1 B DC 8 1_555 C DG 5 1_555 0.803 0.015 0.040 20.449 -7.970 6.438 8 E_DC8:DG5_F E 8 ? F 5 ? 19 1 1 B DA 9 1_555 C DT 4 1_555 0.002 -0.038 -0.085 -3.369 -14.538 1.371 9 E_DA9:DT4_F E 9 ? F 4 ? 20 1 1 B DT 10 1_555 C DA 3 1_555 -0.432 -0.069 0.104 2.881 -17.892 4.015 10 E_DT10:DA3_F E 10 ? F 3 ? 20 1 1 B DT 11 1_555 C DA 2 1_555 0.208 -0.068 0.214 -0.970 -17.869 5.972 11 E_DT11:DA2_F E 11 ? F 2 ? 20 1 1 B DC 12 1_555 C DG 1 1_555 0.159 -0.058 0.313 -6.753 -8.944 -1.920 12 E_DC12:DG1_F E 12 ? F 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DA 1 1_555 C DT 12 1_555 B DG 2 1_555 C DC 11 1_555 0.021 -0.105 3.212 -3.295 1.330 35.790 -0.355 -0.494 3.192 2.158 5.345 35.961 1 EE_DA1DG2:DC11DT12_FF E 1 ? F 12 ? E 2 ? F 11 ? 1 B DG 2 1_555 C DC 11 1_555 B DA 3 1_555 C DT 10 1_555 -0.151 -0.507 3.401 -0.804 1.485 38.445 -0.961 0.125 3.383 2.253 1.220 38.480 2 EE_DG2DA3:DT10DC11_FF E 2 ? F 11 ? E 3 ? F 10 ? 1 B DA 3 1_555 C DT 10 1_555 B DT 4 1_555 C DA 9 1_555 0.235 -0.625 3.090 -2.037 2.591 29.101 -1.760 -0.876 3.001 5.135 4.038 29.283 3 EE_DA3DT4:DA9DT10_FF E 3 ? F 10 ? E 4 ? F 9 ? 1 B DT 4 1_555 C DA 9 1_555 B DG 5 1_555 C DC 8 1_555 0.202 -0.673 3.231 0.231 3.848 26.731 -2.394 -0.375 3.107 8.268 -0.497 27.003 4 EE_DT4DG5:DC8DA9_FF E 4 ? F 9 ? E 5 ? F 8 ? 1 B DG 5 1_555 C DC 8 1_555 B DG 6 1_555 C DC 7 1_555 -0.697 -0.488 3.414 -1.736 3.985 32.964 -1.547 0.916 3.365 6.985 3.043 33.241 5 EE_DG5DG6:DC7DC8_FF E 5 ? F 8 ? E 6 ? F 7 ? 1 B DG 6 1_555 C DC 7 1_555 B DA 7 1_555 C DT 6 1_555 -0.295 -0.529 3.379 -0.762 -2.058 40.695 -0.524 0.336 3.406 -2.956 1.095 40.752 6 EE_DG6DA7:DT6DC7_FF E 6 ? F 7 ? E 7 ? F 6 ? 1 B DA 7 1_555 C DT 6 1_555 B DC 8 1_555 C DG 5 1_555 0.512 -0.314 2.876 -1.498 7.998 26.657 -2.303 -1.374 2.640 16.855 3.158 27.850 7 EE_DA7DC8:DG5DT6_FF E 7 ? F 6 ? E 8 ? F 5 ? 1 B DC 8 1_555 C DG 5 1_555 B DA 9 1_555 C DT 4 1_555 0.038 -0.056 3.756 3.547 1.332 38.944 -0.267 0.432 3.741 1.992 -5.304 39.121 8 EE_DC8DA9:DT4DG5_FF E 8 ? F 5 ? E 9 ? F 4 ? 1 B DA 9 1_555 C DT 4 1_555 B DT 10 1_555 C DA 3 1_555 0.283 -0.809 3.080 -0.396 -2.694 31.742 -1.007 -0.585 3.133 -4.914 0.722 31.855 9 EE_DA9DT10:DA3DT4_FF E 9 ? F 4 ? E 10 ? F 3 ? 1 B DT 10 1_555 C DA 3 1_555 B DT 11 1_555 C DA 2 1_555 -0.043 -0.639 3.312 -0.642 0.499 36.145 -1.101 -0.022 3.304 0.804 1.034 36.153 10 EE_DT10DT11:DA2DA3_FF E 10 ? F 3 ? E 11 ? F 2 ? 1 B DT 11 1_555 C DA 2 1_555 B DC 12 1_555 C DG 1 1_555 -0.296 -0.407 3.420 -2.997 -0.403 37.798 -0.572 0.053 3.436 -0.621 4.617 37.914 11 EE_DT11DC12:DG1DA2_FF E 11 ? F 2 ? E 12 ? F 1 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' R35GM134744 1 'Cancer Prevention and Research Institute of Texas (CPRIT)' 'United States' RR160029 2 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 9E6R _pdbx_initial_refinement_model.details ? # _space_group.name_H-M_alt 'P 41 21 2' _space_group.name_Hall 'P 4abw 2nw' _space_group.IT_number 92 _space_group.crystal_system tetragonal _space_group.id 1 # _atom_sites.entry_id 9YLM _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.017663 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017663 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006459 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 ? ? 1.42069 35.72801 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? 9.55732 6.39887 ? ? 1.23737 29.19336 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? ZN ? ? ? ? ? ? ? ? ? ? ? ? ? ZN2+ ? ? 27.87530 ? ? ? 3.31736 ? ? ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ # loop_ #