data_9YNM # _entry.id 9YNM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.415 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9YNM pdb_00009ynm 10.2210/pdb9ynm/pdb WWPDB D_1000300897 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2026-07-15 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9YNM _pdbx_database_status.recvd_initial_deposition_date 2025-10-10 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email dabaker@uw.edu _pdbx_contact_author.name_first David _pdbx_contact_author.name_last Baker _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-7896-6217 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Bera, A.K.' 1 ? 'Choi, H.' 2 ? 'Kang, A.' 3 ? 'Nguyen, H.' 4 ? 'Baker, D.' 5 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Biorxiv _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2692-8205 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Computational design of cysteine proteases.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1101/2025.11.21.689808 _citation.pdbx_database_id_PubMed 41332739 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Choi, H.' 1 0009-0004-8035-1552 primary 'Coventry, B.' 2 ? primary 'Bauer, M.' 3 0000-0003-1357-2852 primary 'Venkatesh, P.' 4 ? primary 'Chen, A.' 5 ? primary 'Kim, D.' 6 ? primary 'Bera, A.K.' 7 ? primary 'Kang, A.' 8 ? primary 'Nguyen, H.' 9 ? primary 'Joyce, E.' 10 ? primary 'Shankaran, B.' 11 ? primary 'Thompson, T.R.' 12 ? primary 'Gershon, J.M.' 13 ? primary 'Shida, A.F.' 14 ? primary 'Lee, G.R.' 15 ? primary 'Hilvert, D.' 16 ? primary 'Pellock, S.J.' 17 0000-0002-7557-7985 primary 'Baker, D.' 18 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Dokki_15 WT apo' 22032.689 1 ? ? ? ? 2 water nat water 18.015 207 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SHHHHHHSGGLDAEYEKLAEGVKEIYEVYYETGKKLAEEYPDATVNLVNYDNSHFYLELETPKGTVIVDGDENQYPIVTK NGKKTEDKEAKAKLKEIAEKYDIDLSTT(OCS)LIRSLAIVQAYWETRNGKAPVKLYSEGTGVPRQELAAANLVSKIYKK GDKSKYLKVTGAWRPDGVLTLNLLDPNGNVLASYTIKYGS ; _entity_poly.pdbx_seq_one_letter_code_can ;SHHHHHHSGGLDAEYEKLAEGVKEIYEVYYETGKKLAEEYPDATVNLVNYDNSHFYLELETPKGTVIVDGDENQYPIVTK NGKKTEDKEAKAKLKEIAEKYDIDLSTTCLIRSLAIVQAYWETRNGKAPVKLYSEGTGVPRQELAAANLVSKIYKKGDKS KYLKVTGAWRPDGVLTLNLLDPNGNVLASYTIKYGS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 SER n 1 9 GLY n 1 10 GLY n 1 11 LEU n 1 12 ASP n 1 13 ALA n 1 14 GLU n 1 15 TYR n 1 16 GLU n 1 17 LYS n 1 18 LEU n 1 19 ALA n 1 20 GLU n 1 21 GLY n 1 22 VAL n 1 23 LYS n 1 24 GLU n 1 25 ILE n 1 26 TYR n 1 27 GLU n 1 28 VAL n 1 29 TYR n 1 30 TYR n 1 31 GLU n 1 32 THR n 1 33 GLY n 1 34 LYS n 1 35 LYS n 1 36 LEU n 1 37 ALA n 1 38 GLU n 1 39 GLU n 1 40 TYR n 1 41 PRO n 1 42 ASP n 1 43 ALA n 1 44 THR n 1 45 VAL n 1 46 ASN n 1 47 LEU n 1 48 VAL n 1 49 ASN n 1 50 TYR n 1 51 ASP n 1 52 ASN n 1 53 SER n 1 54 HIS n 1 55 PHE n 1 56 TYR n 1 57 LEU n 1 58 GLU n 1 59 LEU n 1 60 GLU n 1 61 THR n 1 62 PRO n 1 63 LYS n 1 64 GLY n 1 65 THR n 1 66 VAL n 1 67 ILE n 1 68 VAL n 1 69 ASP n 1 70 GLY n 1 71 ASP n 1 72 GLU n 1 73 ASN n 1 74 GLN n 1 75 TYR n 1 76 PRO n 1 77 ILE n 1 78 VAL n 1 79 THR n 1 80 LYS n 1 81 ASN n 1 82 GLY n 1 83 LYS n 1 84 LYS n 1 85 THR n 1 86 GLU n 1 87 ASP n 1 88 LYS n 1 89 GLU n 1 90 ALA n 1 91 LYS n 1 92 ALA n 1 93 LYS n 1 94 LEU n 1 95 LYS n 1 96 GLU n 1 97 ILE n 1 98 ALA n 1 99 GLU n 1 100 LYS n 1 101 TYR n 1 102 ASP n 1 103 ILE n 1 104 ASP n 1 105 LEU n 1 106 SER n 1 107 THR n 1 108 THR n 1 109 OCS n 1 110 LEU n 1 111 ILE n 1 112 ARG n 1 113 SER n 1 114 LEU n 1 115 ALA n 1 116 ILE n 1 117 VAL n 1 118 GLN n 1 119 ALA n 1 120 TYR n 1 121 TRP n 1 122 GLU n 1 123 THR n 1 124 ARG n 1 125 ASN n 1 126 GLY n 1 127 LYS n 1 128 ALA n 1 129 PRO n 1 130 VAL n 1 131 LYS n 1 132 LEU n 1 133 TYR n 1 134 SER n 1 135 GLU n 1 136 GLY n 1 137 THR n 1 138 GLY n 1 139 VAL n 1 140 PRO n 1 141 ARG n 1 142 GLN n 1 143 GLU n 1 144 LEU n 1 145 ALA n 1 146 ALA n 1 147 ALA n 1 148 ASN n 1 149 LEU n 1 150 VAL n 1 151 SER n 1 152 LYS n 1 153 ILE n 1 154 TYR n 1 155 LYS n 1 156 LYS n 1 157 GLY n 1 158 ASP n 1 159 LYS n 1 160 SER n 1 161 LYS n 1 162 TYR n 1 163 LEU n 1 164 LYS n 1 165 VAL n 1 166 THR n 1 167 GLY n 1 168 ALA n 1 169 TRP n 1 170 ARG n 1 171 PRO n 1 172 ASP n 1 173 GLY n 1 174 VAL n 1 175 LEU n 1 176 THR n 1 177 LEU n 1 178 ASN n 1 179 LEU n 1 180 LEU n 1 181 ASP n 1 182 PRO n 1 183 ASN n 1 184 GLY n 1 185 ASN n 1 186 VAL n 1 187 LEU n 1 188 ALA n 1 189 SER n 1 190 TYR n 1 191 THR n 1 192 ILE n 1 193 LYS n 1 194 TYR n 1 195 GLY n 1 196 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 196 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'synthetic construct' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 32630 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 OCS 'L-peptide linking' n 'CYSTEINESULFONIC ACID' ? 'C3 H7 N O5 S' 169.156 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -8 ? ? ? A . n A 1 2 HIS 2 -7 ? ? ? A . n A 1 3 HIS 3 -6 ? ? ? A . n A 1 4 HIS 4 -5 ? ? ? A . n A 1 5 HIS 5 -4 ? ? ? A . n A 1 6 HIS 6 -3 ? ? ? A . n A 1 7 HIS 7 -2 ? ? ? A . n A 1 8 SER 8 -1 ? ? ? A . n A 1 9 GLY 9 0 ? ? ? A . n A 1 10 GLY 10 1 ? ? ? A . n A 1 11 LEU 11 2 11 LEU LEU A . n A 1 12 ASP 12 3 12 ASP ASP A . n A 1 13 ALA 13 4 13 ALA ALA A . n A 1 14 GLU 14 5 14 GLU GLU A . n A 1 15 TYR 15 6 15 TYR TYR A . n A 1 16 GLU 16 7 16 GLU GLU A . n A 1 17 LYS 17 8 17 LYS LYS A . n A 1 18 LEU 18 9 18 LEU LEU A . n A 1 19 ALA 19 10 19 ALA ALA A . n A 1 20 GLU 20 11 20 GLU GLU A . n A 1 21 GLY 21 12 21 GLY GLY A . n A 1 22 VAL 22 13 22 VAL VAL A . n A 1 23 LYS 23 14 23 LYS LYS A . n A 1 24 GLU 24 15 24 GLU GLU A . n A 1 25 ILE 25 16 25 ILE ILE A . n A 1 26 TYR 26 17 26 TYR TYR A . n A 1 27 GLU 27 18 27 GLU GLU A . n A 1 28 VAL 28 19 28 VAL VAL A . n A 1 29 TYR 29 20 29 TYR TYR A . n A 1 30 TYR 30 21 30 TYR TYR A . n A 1 31 GLU 31 22 31 GLU GLU A . n A 1 32 THR 32 23 32 THR THR A . n A 1 33 GLY 33 24 33 GLY GLY A . n A 1 34 LYS 34 25 34 LYS LYS A . n A 1 35 LYS 35 26 35 LYS LYS A . n A 1 36 LEU 36 27 36 LEU LEU A . n A 1 37 ALA 37 28 37 ALA ALA A . n A 1 38 GLU 38 29 38 GLU GLU A . n A 1 39 GLU 39 30 39 GLU GLU A . n A 1 40 TYR 40 31 40 TYR TYR A . n A 1 41 PRO 41 32 41 PRO PRO A . n A 1 42 ASP 42 33 42 ASP ASP A . n A 1 43 ALA 43 34 43 ALA ALA A . n A 1 44 THR 44 35 44 THR THR A . n A 1 45 VAL 45 36 45 VAL VAL A . n A 1 46 ASN 46 37 46 ASN ASN A . n A 1 47 LEU 47 38 47 LEU LEU A . n A 1 48 VAL 48 39 48 VAL VAL A . n A 1 49 ASN 49 40 49 ASN ASN A . n A 1 50 TYR 50 41 50 TYR TYR A . n A 1 51 ASP 51 42 51 ASP ASP A . n A 1 52 ASN 52 43 52 ASN ASN A . n A 1 53 SER 53 44 53 SER SER A . n A 1 54 HIS 54 45 54 HIS HIS A . n A 1 55 PHE 55 46 55 PHE PHE A . n A 1 56 TYR 56 47 56 TYR TYR A . n A 1 57 LEU 57 48 57 LEU LEU A . n A 1 58 GLU 58 49 58 GLU GLU A . n A 1 59 LEU 59 50 59 LEU LEU A . n A 1 60 GLU 60 51 60 GLU GLU A . n A 1 61 THR 61 52 61 THR THR A . n A 1 62 PRO 62 53 62 PRO PRO A . n A 1 63 LYS 63 54 63 LYS LYS A . n A 1 64 GLY 64 55 64 GLY GLY A . n A 1 65 THR 65 56 65 THR THR A . n A 1 66 VAL 66 57 66 VAL VAL A . n A 1 67 ILE 67 58 67 ILE ILE A . n A 1 68 VAL 68 59 68 VAL VAL A . n A 1 69 ASP 69 60 69 ASP ASP A . n A 1 70 GLY 70 61 70 GLY GLY A . n A 1 71 ASP 71 62 71 ASP ASP A . n A 1 72 GLU 72 63 72 GLU GLU A . n A 1 73 ASN 73 64 73 ASN ASN A . n A 1 74 GLN 74 65 74 GLN GLN A . n A 1 75 TYR 75 66 75 TYR TYR A . n A 1 76 PRO 76 67 76 PRO PRO A . n A 1 77 ILE 77 68 77 ILE ILE A . n A 1 78 VAL 78 69 78 VAL VAL A . n A 1 79 THR 79 70 79 THR THR A . n A 1 80 LYS 80 71 80 LYS LYS A . n A 1 81 ASN 81 72 81 ASN ASN A . n A 1 82 GLY 82 73 82 GLY GLY A . n A 1 83 LYS 83 74 83 LYS LYS A . n A 1 84 LYS 84 75 84 LYS LYS A . n A 1 85 THR 85 76 85 THR THR A . n A 1 86 GLU 86 77 86 GLU GLU A . n A 1 87 ASP 87 78 87 ASP ASP A . n A 1 88 LYS 88 79 88 LYS LYS A . n A 1 89 GLU 89 80 89 GLU GLU A . n A 1 90 ALA 90 81 90 ALA ALA A . n A 1 91 LYS 91 82 91 LYS LYS A . n A 1 92 ALA 92 83 92 ALA ALA A . n A 1 93 LYS 93 84 93 LYS LYS A . n A 1 94 LEU 94 85 94 LEU LEU A . n A 1 95 LYS 95 86 95 LYS LYS A . n A 1 96 GLU 96 87 96 GLU GLU A . n A 1 97 ILE 97 88 97 ILE ILE A . n A 1 98 ALA 98 89 98 ALA ALA A . n A 1 99 GLU 99 90 99 GLU GLU A . n A 1 100 LYS 100 91 100 LYS LYS A . n A 1 101 TYR 101 92 101 TYR TYR A . n A 1 102 ASP 102 93 102 ASP ASP A . n A 1 103 ILE 103 94 103 ILE ILE A . n A 1 104 ASP 104 95 104 ASP ASP A . n A 1 105 LEU 105 96 105 LEU LEU A . n A 1 106 SER 106 97 106 SER SER A . n A 1 107 THR 107 98 107 THR THR A . n A 1 108 THR 108 99 108 THR THR A . n A 1 109 OCS 109 100 109 OCS OCS A . n A 1 110 LEU 110 101 110 LEU LEU A . n A 1 111 ILE 111 102 111 ILE ILE A . n A 1 112 ARG 112 103 112 ARG ARG A . n A 1 113 SER 113 104 113 SER SER A . n A 1 114 LEU 114 105 114 LEU LEU A . n A 1 115 ALA 115 106 115 ALA ALA A . n A 1 116 ILE 116 107 116 ILE ILE A . n A 1 117 VAL 117 108 117 VAL VAL A . n A 1 118 GLN 118 109 118 GLN GLN A . n A 1 119 ALA 119 110 119 ALA ALA A . n A 1 120 TYR 120 111 120 TYR TYR A . n A 1 121 TRP 121 112 121 TRP TRP A . n A 1 122 GLU 122 113 122 GLU GLU A . n A 1 123 THR 123 114 123 THR THR A . n A 1 124 ARG 124 115 124 ARG ARG A . n A 1 125 ASN 125 116 125 ASN ASN A . n A 1 126 GLY 126 117 126 GLY GLY A . n A 1 127 LYS 127 118 127 LYS LYS A . n A 1 128 ALA 128 119 128 ALA ALA A . n A 1 129 PRO 129 120 129 PRO PRO A . n A 1 130 VAL 130 121 130 VAL VAL A . n A 1 131 LYS 131 122 131 LYS LYS A . n A 1 132 LEU 132 123 132 LEU LEU A . n A 1 133 TYR 133 124 133 TYR TYR A . n A 1 134 SER 134 125 134 SER SER A . n A 1 135 GLU 135 126 135 GLU GLU A . n A 1 136 GLY 136 127 136 GLY GLY A . n A 1 137 THR 137 128 137 THR THR A . n A 1 138 GLY 138 129 138 GLY GLY A . n A 1 139 VAL 139 130 139 VAL VAL A . n A 1 140 PRO 140 131 140 PRO PRO A . n A 1 141 ARG 141 132 141 ARG ARG A . n A 1 142 GLN 142 133 142 GLN GLN A . n A 1 143 GLU 143 134 143 GLU GLU A . n A 1 144 LEU 144 135 144 LEU LEU A . n A 1 145 ALA 145 136 145 ALA ALA A . n A 1 146 ALA 146 137 146 ALA ALA A . n A 1 147 ALA 147 138 147 ALA ALA A . n A 1 148 ASN 148 139 148 ASN ASN A . n A 1 149 LEU 149 140 149 LEU LEU A . n A 1 150 VAL 150 141 150 VAL VAL A . n A 1 151 SER 151 142 151 SER SER A . n A 1 152 LYS 152 143 152 LYS LYS A . n A 1 153 ILE 153 144 153 ILE ILE A . n A 1 154 TYR 154 145 154 TYR TYR A . n A 1 155 LYS 155 146 155 LYS LYS A . n A 1 156 LYS 156 147 156 LYS LYS A . n A 1 157 GLY 157 148 157 GLY GLY A . n A 1 158 ASP 158 149 158 ASP ASP A . n A 1 159 LYS 159 150 159 LYS LYS A . n A 1 160 SER 160 151 160 SER SER A . n A 1 161 LYS 161 152 161 LYS LYS A . n A 1 162 TYR 162 153 162 TYR TYR A . n A 1 163 LEU 163 154 163 LEU LEU A . n A 1 164 LYS 164 155 164 LYS LYS A . n A 1 165 VAL 165 156 165 VAL VAL A . n A 1 166 THR 166 157 166 THR THR A . n A 1 167 GLY 167 158 167 GLY GLY A . n A 1 168 ALA 168 159 168 ALA ALA A . n A 1 169 TRP 169 160 169 TRP TRP A . n A 1 170 ARG 170 161 170 ARG ARG A . n A 1 171 PRO 171 162 171 PRO PRO A . n A 1 172 ASP 172 163 172 ASP ASP A . n A 1 173 GLY 173 164 173 GLY GLY A . n A 1 174 VAL 174 165 174 VAL VAL A . n A 1 175 LEU 175 166 175 LEU LEU A . n A 1 176 THR 176 167 176 THR THR A . n A 1 177 LEU 177 168 177 LEU LEU A . n A 1 178 ASN 178 169 178 ASN ASN A . n A 1 179 LEU 179 170 179 LEU LEU A . n A 1 180 LEU 180 171 180 LEU LEU A . n A 1 181 ASP 181 172 181 ASP ASP A . n A 1 182 PRO 182 173 182 PRO PRO A . n A 1 183 ASN 183 174 183 ASN ASN A . n A 1 184 GLY 184 175 184 GLY GLY A . n A 1 185 ASN 185 176 185 ASN ASN A . n A 1 186 VAL 186 177 186 VAL VAL A . n A 1 187 LEU 187 178 187 LEU LEU A . n A 1 188 ALA 188 179 188 ALA ALA A . n A 1 189 SER 189 180 189 SER SER A . n A 1 190 TYR 190 181 190 TYR TYR A . n A 1 191 THR 191 182 191 THR THR A . n A 1 192 ILE 192 183 192 ILE ILE A . n A 1 193 LYS 193 184 193 LYS LYS A . n A 1 194 TYR 194 185 194 TYR TYR A . n A 1 195 GLY 195 186 195 GLY GLY A . n A 1 196 SER 196 187 196 SER SER A . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id OCS _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id OCS _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 201 67 HOH HOH A . B 2 HOH 2 202 43 HOH HOH A . B 2 HOH 3 203 161 HOH HOH A . B 2 HOH 4 204 20 HOH HOH A . B 2 HOH 5 205 72 HOH HOH A . B 2 HOH 6 206 79 HOH HOH A . B 2 HOH 7 207 81 HOH HOH A . B 2 HOH 8 208 122 HOH HOH A . B 2 HOH 9 209 129 HOH HOH A . B 2 HOH 10 210 2 HOH HOH A . B 2 HOH 11 211 187 HOH HOH A . B 2 HOH 12 212 63 HOH HOH A . B 2 HOH 13 213 145 HOH HOH A . B 2 HOH 14 214 16 HOH HOH A . B 2 HOH 15 215 150 HOH HOH A . B 2 HOH 16 216 80 HOH HOH A . B 2 HOH 17 217 141 HOH HOH A . B 2 HOH 18 218 70 HOH HOH A . B 2 HOH 19 219 105 HOH HOH A . B 2 HOH 20 220 111 HOH HOH A . B 2 HOH 21 221 47 HOH HOH A . B 2 HOH 22 222 62 HOH HOH A . B 2 HOH 23 223 125 HOH HOH A . B 2 HOH 24 224 169 HOH HOH A . B 2 HOH 25 225 46 HOH HOH A . B 2 HOH 26 226 136 HOH HOH A . B 2 HOH 27 227 75 HOH HOH A . B 2 HOH 28 228 40 HOH HOH A . B 2 HOH 29 229 113 HOH HOH A . B 2 HOH 30 230 13 HOH HOH A . B 2 HOH 31 231 4 HOH HOH A . B 2 HOH 32 232 9 HOH HOH A . B 2 HOH 33 233 119 HOH HOH A . B 2 HOH 34 234 135 HOH HOH A . B 2 HOH 35 235 107 HOH HOH A . B 2 HOH 36 236 203 HOH HOH A . B 2 HOH 37 237 54 HOH HOH A . B 2 HOH 38 238 166 HOH HOH A . B 2 HOH 39 239 14 HOH HOH A . B 2 HOH 40 240 38 HOH HOH A . B 2 HOH 41 241 8 HOH HOH A . B 2 HOH 42 242 76 HOH HOH A . B 2 HOH 43 243 66 HOH HOH A . B 2 HOH 44 244 49 HOH HOH A . B 2 HOH 45 245 191 HOH HOH A . B 2 HOH 46 246 5 HOH HOH A . B 2 HOH 47 247 159 HOH HOH A . B 2 HOH 48 248 134 HOH HOH A . B 2 HOH 49 249 19 HOH HOH A . B 2 HOH 50 250 42 HOH HOH A . B 2 HOH 51 251 137 HOH HOH A . B 2 HOH 52 252 3 HOH HOH A . B 2 HOH 53 253 172 HOH HOH A . B 2 HOH 54 254 106 HOH HOH A . B 2 HOH 55 255 31 HOH HOH A . B 2 HOH 56 256 186 HOH HOH A . B 2 HOH 57 257 25 HOH HOH A . B 2 HOH 58 258 92 HOH HOH A . B 2 HOH 59 259 65 HOH HOH A . B 2 HOH 60 260 155 HOH HOH A . B 2 HOH 61 261 164 HOH HOH A . B 2 HOH 62 262 11 HOH HOH A . B 2 HOH 63 263 29 HOH HOH A . B 2 HOH 64 264 73 HOH HOH A . B 2 HOH 65 265 26 HOH HOH A . B 2 HOH 66 266 22 HOH HOH A . B 2 HOH 67 267 182 HOH HOH A . B 2 HOH 68 268 189 HOH HOH A . B 2 HOH 69 269 12 HOH HOH A . B 2 HOH 70 270 149 HOH HOH A . B 2 HOH 71 271 35 HOH HOH A . B 2 HOH 72 272 48 HOH HOH A . B 2 HOH 73 273 91 HOH HOH A . B 2 HOH 74 274 100 HOH HOH A . B 2 HOH 75 275 154 HOH HOH A . B 2 HOH 76 276 89 HOH HOH A . B 2 HOH 77 277 85 HOH HOH A . B 2 HOH 78 278 60 HOH HOH A . B 2 HOH 79 279 10 HOH HOH A . B 2 HOH 80 280 82 HOH HOH A . B 2 HOH 81 281 158 HOH HOH A . B 2 HOH 82 282 86 HOH HOH A . B 2 HOH 83 283 199 HOH HOH A . B 2 HOH 84 284 95 HOH HOH A . B 2 HOH 85 285 156 HOH HOH A . B 2 HOH 86 286 71 HOH HOH A . B 2 HOH 87 287 27 HOH HOH A . B 2 HOH 88 288 192 HOH HOH A . B 2 HOH 89 289 39 HOH HOH A . B 2 HOH 90 290 18 HOH HOH A . B 2 HOH 91 291 193 HOH HOH A . B 2 HOH 92 292 69 HOH HOH A . B 2 HOH 93 293 68 HOH HOH A . B 2 HOH 94 294 84 HOH HOH A . B 2 HOH 95 295 98 HOH HOH A . B 2 HOH 96 296 87 HOH HOH A . B 2 HOH 97 297 78 HOH HOH A . B 2 HOH 98 298 83 HOH HOH A . B 2 HOH 99 299 77 HOH HOH A . B 2 HOH 100 300 37 HOH HOH A . B 2 HOH 101 301 7 HOH HOH A . B 2 HOH 102 302 1 HOH HOH A . B 2 HOH 103 303 28 HOH HOH A . B 2 HOH 104 304 96 HOH HOH A . B 2 HOH 105 305 124 HOH HOH A . B 2 HOH 106 306 50 HOH HOH A . B 2 HOH 107 307 205 HOH HOH A . B 2 HOH 108 308 148 HOH HOH A . B 2 HOH 109 309 101 HOH HOH A . B 2 HOH 110 310 99 HOH HOH A . B 2 HOH 111 311 55 HOH HOH A . B 2 HOH 112 312 162 HOH HOH A . B 2 HOH 113 313 196 HOH HOH A . B 2 HOH 114 314 23 HOH HOH A . B 2 HOH 115 315 33 HOH HOH A . B 2 HOH 116 316 56 HOH HOH A . B 2 HOH 117 317 97 HOH HOH A . B 2 HOH 118 318 109 HOH HOH A . B 2 HOH 119 319 103 HOH HOH A . B 2 HOH 120 320 128 HOH HOH A . B 2 HOH 121 321 127 HOH HOH A . B 2 HOH 122 322 104 HOH HOH A . B 2 HOH 123 323 204 HOH HOH A . B 2 HOH 124 324 173 HOH HOH A . B 2 HOH 125 325 36 HOH HOH A . B 2 HOH 126 326 21 HOH HOH A . B 2 HOH 127 327 198 HOH HOH A . B 2 HOH 128 328 157 HOH HOH A . B 2 HOH 129 329 180 HOH HOH A . B 2 HOH 130 330 115 HOH HOH A . B 2 HOH 131 331 15 HOH HOH A . B 2 HOH 132 332 138 HOH HOH A . B 2 HOH 133 333 142 HOH HOH A . B 2 HOH 134 334 32 HOH HOH A . B 2 HOH 135 335 117 HOH HOH A . B 2 HOH 136 336 174 HOH HOH A . B 2 HOH 137 337 207 HOH HOH A . B 2 HOH 138 338 74 HOH HOH A . B 2 HOH 139 339 24 HOH HOH A . B 2 HOH 140 340 179 HOH HOH A . B 2 HOH 141 341 45 HOH HOH A . B 2 HOH 142 342 17 HOH HOH A . B 2 HOH 143 343 132 HOH HOH A . B 2 HOH 144 344 52 HOH HOH A . B 2 HOH 145 345 30 HOH HOH A . B 2 HOH 146 346 139 HOH HOH A . B 2 HOH 147 347 160 HOH HOH A . B 2 HOH 148 348 176 HOH HOH A . B 2 HOH 149 349 170 HOH HOH A . B 2 HOH 150 350 188 HOH HOH A . B 2 HOH 151 351 53 HOH HOH A . B 2 HOH 152 352 120 HOH HOH A . B 2 HOH 153 353 6 HOH HOH A . B 2 HOH 154 354 181 HOH HOH A . B 2 HOH 155 355 195 HOH HOH A . B 2 HOH 156 356 51 HOH HOH A . B 2 HOH 157 357 102 HOH HOH A . B 2 HOH 158 358 126 HOH HOH A . B 2 HOH 159 359 178 HOH HOH A . B 2 HOH 160 360 163 HOH HOH A . B 2 HOH 161 361 147 HOH HOH A . B 2 HOH 162 362 168 HOH HOH A . B 2 HOH 163 363 118 HOH HOH A . B 2 HOH 164 364 131 HOH HOH A . B 2 HOH 165 365 175 HOH HOH A . B 2 HOH 166 366 108 HOH HOH A . B 2 HOH 167 367 151 HOH HOH A . B 2 HOH 168 368 44 HOH HOH A . B 2 HOH 169 369 177 HOH HOH A . B 2 HOH 170 370 116 HOH HOH A . B 2 HOH 171 371 184 HOH HOH A . B 2 HOH 172 372 57 HOH HOH A . B 2 HOH 173 373 194 HOH HOH A . B 2 HOH 174 374 133 HOH HOH A . B 2 HOH 175 375 200 HOH HOH A . B 2 HOH 176 376 140 HOH HOH A . B 2 HOH 177 377 165 HOH HOH A . B 2 HOH 178 378 185 HOH HOH A . B 2 HOH 179 379 190 HOH HOH A . B 2 HOH 180 380 90 HOH HOH A . B 2 HOH 181 381 110 HOH HOH A . B 2 HOH 182 382 130 HOH HOH A . B 2 HOH 183 383 93 HOH HOH A . B 2 HOH 184 384 201 HOH HOH A . B 2 HOH 185 385 61 HOH HOH A . B 2 HOH 186 386 112 HOH HOH A . B 2 HOH 187 387 64 HOH HOH A . B 2 HOH 188 388 59 HOH HOH A . B 2 HOH 189 389 144 HOH HOH A . B 2 HOH 190 390 206 HOH HOH A . B 2 HOH 191 391 152 HOH HOH A . B 2 HOH 192 392 41 HOH HOH A . B 2 HOH 193 393 183 HOH HOH A . B 2 HOH 194 394 114 HOH HOH A . B 2 HOH 195 395 146 HOH HOH A . B 2 HOH 196 396 58 HOH HOH A . B 2 HOH 197 397 202 HOH HOH A . B 2 HOH 198 398 34 HOH HOH A . B 2 HOH 199 399 88 HOH HOH A . B 2 HOH 200 400 143 HOH HOH A . B 2 HOH 201 401 153 HOH HOH A . B 2 HOH 202 402 121 HOH HOH A . B 2 HOH 203 403 197 HOH HOH A . B 2 HOH 204 404 94 HOH HOH A . B 2 HOH 205 405 167 HOH HOH A . B 2 HOH 206 406 123 HOH HOH A . B 2 HOH 207 407 171 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_reference_DOI _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.21.2_5419 ? 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . ? 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . ? 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . ? 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 9YNM _cell.details ? _cell.formula_units_Z ? _cell.length_a 38.228 _cell.length_a_esd ? _cell.length_b 61.859 _cell.length_b_esd ? _cell.length_c 74.758 _cell.length_c_esd ? _cell.volume 176783.670 _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9YNM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9YNM _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.01 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 38.68 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1M BIS-TRIS pH 6.5, 20% w/v polyethylene glycol monomethyl ether 5000' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 9M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2025-09-24 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.91989 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'NSLS-II BEAMLINE 17-ID-1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.91989 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 17-ID-1 _diffrn_source.pdbx_synchrotron_site NSLS-II # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 9YNM _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.56 _reflns.d_resolution_low 34.04 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 25764 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.2 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 13.0 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 14.4 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.026 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.088 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.56 _reflns_shell.d_res_low 1.59 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.2 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1212 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.256 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.859 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.735 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 23.17 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9YNM _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.56 _refine.ls_d_res_low 34.04 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 25705 _refine.ls_number_reflns_R_free 1504 _refine.ls_number_reflns_R_work 24201 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.07 _refine.ls_percent_reflns_R_free 5.85 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1732 _refine.ls_R_factor_R_free 0.2017 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1715 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.39 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 20.8803 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1506 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.56 _refine_hist.d_res_low 34.04 _refine_hist.number_atoms_solvent 207 _refine_hist.number_atoms_total 1682 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 1475 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0102 ? 1547 ? f_bond_d ? ? ? 'X-RAY DIFFRACTION' ? 1.1469 ? 2111 ? f_angle_d ? ? ? 'X-RAY DIFFRACTION' ? 0.0763 ? 238 ? f_chiral_restr ? ? ? 'X-RAY DIFFRACTION' ? 0.0083 ? 269 ? f_plane_restr ? ? ? 'X-RAY DIFFRACTION' ? 17.3285 ? 596 ? f_dihedral_angle_d ? ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.correlation_coeff_Fo_to_Fc _refine_ls_shell.correlation_coeff_Fo_to_Fc_free _refine_ls_shell.correlation_coeff_I_to_Fcsqd_work _refine_ls_shell.correlation_coeff_I_to_Fcsqd_free _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 1.56 1.61 . . 129 2068 95.27 . . . . 0.2117 . . . . . . . . . . . . . . . 0.2625 'X-RAY DIFFRACTION' 1.61 1.67 . . 131 2113 95.98 . . . . 0.1963 . . . . . . . . . . . . . . . 0.2394 'X-RAY DIFFRACTION' 1.67 1.73 . . 136 2184 99.78 . . . . 0.1890 . . . . . . . . . . . . . . . 0.2280 'X-RAY DIFFRACTION' 1.73 1.81 . . 135 2170 99.57 . . . . 0.2162 . . . . . . . . . . . . . . . 0.2693 'X-RAY DIFFRACTION' 1.81 1.91 . . 136 2192 99.61 . . . . 0.1866 . . . . . . . . . . . . . . . 0.2665 'X-RAY DIFFRACTION' 1.91 2.03 . . 135 2176 99.61 . . . . 0.1798 . . . . . . . . . . . . . . . 0.2095 'X-RAY DIFFRACTION' 2.03 2.19 . . 137 2204 99.91 . . . . 0.1791 . . . . . . . . . . . . . . . 0.1986 'X-RAY DIFFRACTION' 2.19 2.41 . . 138 2231 100.00 . . . . 0.1691 . . . . . . . . . . . . . . . 0.2101 'X-RAY DIFFRACTION' 2.41 2.75 . . 139 2231 100.00 . . . . 0.1725 . . . . . . . . . . . . . . . 0.1757 'X-RAY DIFFRACTION' 2.75 3.47 . . 141 2265 100.00 . . . . 0.1663 . . . . . . . . . . . . . . . 0.1946 'X-RAY DIFFRACTION' 3.47 34.04 . . 147 2367 99.92 . . . . 0.1529 . . . . . . . . . . . . . . . 0.1805 # _struct.entry_id 9YNM _struct.title 'Crystal structure of de novo cysteine protease (Dokki_15 WT apo)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9YNM _struct_keywords.text 'de novo design, Cysteine proteases, enzyme design, deep learning method RFD2-MI, DE NOVO PROTEIN' _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9YNM _struct_ref.pdbx_db_accession 9YNM _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 9YNM _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 196 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 9YNM _struct_ref_seq.db_align_beg -8 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 187 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg -8 _struct_ref_seq.pdbx_auth_seq_align_end 187 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 9280 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 LEU A 11 ? TYR A 40 ? LEU A 2 TYR A 31 1 ? 30 HELX_P HELX_P2 AA2 ASP A 87 ? ASP A 102 ? ASP A 78 ASP A 93 1 ? 16 HELX_P HELX_P3 AA3 ASP A 104 ? THR A 107 ? ASP A 95 THR A 98 5 ? 4 HELX_P HELX_P4 AA4 THR A 108 ? ARG A 124 ? THR A 99 ARG A 115 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A THR 108 C ? ? ? 1_555 A OCS 109 N ? ? A THR 99 A OCS 100 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale2 covale both ? A OCS 109 C ? ? ? 1_555 A LEU 110 N ? ? A OCS 100 A LEU 101 1_555 ? ? ? ? ? ? ? 1.341 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 OCS A 109 ? . . . . OCS A 100 ? 1_555 . . . . . . . CYS 1 OCS Oxidation 'Named protein modification' 2 OCS A 109 ? . . . . OCS A 100 ? 1_555 . . . . . . . CYS 2 OCS Hydroxylation 'Named protein modification' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 7 ? AA2 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? parallel AA1 6 7 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LYS A 83 ? GLU A 86 ? LYS A 74 GLU A 77 AA1 2 PRO A 76 ? LYS A 80 ? PRO A 67 LYS A 71 AA1 3 GLY A 64 ? GLY A 70 ? GLY A 55 GLY A 61 AA1 4 HIS A 54 ? THR A 61 ? HIS A 45 THR A 52 AA1 5 THR A 44 ? TYR A 50 ? THR A 35 TYR A 41 AA1 6 VAL A 130 ? GLY A 136 ? VAL A 121 GLY A 127 AA1 7 VAL A 139 ? GLU A 143 ? VAL A 130 GLU A 134 AA2 1 ALA A 147 ? LYS A 155 ? ALA A 138 LYS A 146 AA2 2 ASP A 158 ? TRP A 169 ? ASP A 149 TRP A 160 AA2 3 LEU A 175 ? LEU A 180 ? LEU A 166 LEU A 171 AA2 4 VAL A 186 ? LYS A 193 ? VAL A 177 LYS A 184 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O LYS A 83 ? O LYS A 74 N LYS A 80 ? N LYS A 71 AA1 2 3 O ILE A 77 ? O ILE A 68 N ASP A 69 ? N ASP A 60 AA1 3 4 O VAL A 66 ? O VAL A 57 N LEU A 59 ? N LEU A 50 AA1 4 5 O GLU A 58 ? O GLU A 49 N ASN A 46 ? N ASN A 37 AA1 5 6 N LEU A 47 ? N LEU A 38 O LYS A 131 ? O LYS A 122 AA1 6 7 N SER A 134 ? N SER A 125 O GLN A 142 ? O GLN A 133 AA2 1 2 N SER A 151 ? N SER A 142 O VAL A 165 ? O VAL A 156 AA2 2 3 N LYS A 164 ? N LYS A 155 O LEU A 180 ? O LEU A 171 AA2 3 4 N LEU A 179 ? N LEU A 170 O LEU A 187 ? O LEU A 178 # _pdbx_entry_details.entry_id 9YNM _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 33 ? ? -108.17 44.15 2 1 ASN A 43 ? ? 66.32 -65.68 3 1 ASP A 149 ? ? -152.10 86.95 # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 x+1/2,-y+1/2,-z 3 -x,y+1/2,-z+1/2 4 -x+1/2,-y,z+1/2 # _pdbx_refine_tls.id 1 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -18.2944594799 _pdbx_refine_tls.origin_y 6.35529151188 _pdbx_refine_tls.origin_z -7.31802042491 _pdbx_refine_tls.T[1][1] 0.0533700765498 _pdbx_refine_tls.T[1][1]_esd ? _pdbx_refine_tls.T[1][2] -0.00561027393798 _pdbx_refine_tls.T[1][2]_esd ? _pdbx_refine_tls.T[1][3] -0.00939336996814 _pdbx_refine_tls.T[1][3]_esd ? _pdbx_refine_tls.T[2][2] 0.0787350561002 _pdbx_refine_tls.T[2][2]_esd ? _pdbx_refine_tls.T[2][3] 0.00107513008239 _pdbx_refine_tls.T[2][3]_esd ? _pdbx_refine_tls.T[3][3] 0.361303384783 _pdbx_refine_tls.T[3][3]_esd ? _pdbx_refine_tls.L[1][1] 1.11281128589 _pdbx_refine_tls.L[1][1]_esd ? _pdbx_refine_tls.L[1][2] -0.271819261436 _pdbx_refine_tls.L[1][2]_esd ? _pdbx_refine_tls.L[1][3] -0.0836611209561 _pdbx_refine_tls.L[1][3]_esd ? _pdbx_refine_tls.L[2][2] 0.831099348055 _pdbx_refine_tls.L[2][2]_esd ? _pdbx_refine_tls.L[2][3] 0.0533932338495 _pdbx_refine_tls.L[2][3]_esd ? _pdbx_refine_tls.L[3][3] 1.18815773003 _pdbx_refine_tls.L[3][3]_esd ? _pdbx_refine_tls.S[1][1] 0.0211320872408 _pdbx_refine_tls.S[1][1]_esd ? _pdbx_refine_tls.S[1][2] 0.0745286872641 _pdbx_refine_tls.S[1][2]_esd ? _pdbx_refine_tls.S[1][3] -0.113986567854 _pdbx_refine_tls.S[1][3]_esd ? _pdbx_refine_tls.S[2][1] -0.0773572754261 _pdbx_refine_tls.S[2][1]_esd ? _pdbx_refine_tls.S[2][2] -0.00260762773289 _pdbx_refine_tls.S[2][2]_esd ? _pdbx_refine_tls.S[2][3] 0.0684893440247 _pdbx_refine_tls.S[2][3]_esd ? _pdbx_refine_tls.S[3][1] 0.190502783412 _pdbx_refine_tls.S[3][1]_esd ? _pdbx_refine_tls.S[3][2] -0.0168168685133 _pdbx_refine_tls.S[3][2]_esd ? _pdbx_refine_tls.S[3][3] -0.00382882352655 _pdbx_refine_tls.S[3][3]_esd ? # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 11 _pdbx_refine_tls_group.beg_PDB_ins_code ? _pdbx_refine_tls_group.end_label_asym_id B _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id S _pdbx_refine_tls_group.end_auth_seq_id 207 _pdbx_refine_tls_group.end_PDB_ins_code ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details all # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER -8 ? A SER 1 2 1 Y 1 A HIS -7 ? A HIS 2 3 1 Y 1 A HIS -6 ? A HIS 3 4 1 Y 1 A HIS -5 ? A HIS 4 5 1 Y 1 A HIS -4 ? A HIS 5 6 1 Y 1 A HIS -3 ? A HIS 6 7 1 Y 1 A HIS -2 ? A HIS 7 8 1 Y 1 A SER -1 ? A SER 8 9 1 Y 1 A GLY 0 ? A GLY 9 10 1 Y 1 A GLY 1 ? A GLY 10 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 ILE N N N N 147 ILE CA C N S 148 ILE C C N N 149 ILE O O N N 150 ILE CB C N S 151 ILE CG1 C N N 152 ILE CG2 C N N 153 ILE CD1 C N N 154 ILE OXT O N N 155 ILE H H N N 156 ILE H2 H N N 157 ILE HA H N N 158 ILE HB H N N 159 ILE HG12 H N N 160 ILE HG13 H N N 161 ILE HG21 H N N 162 ILE HG22 H N N 163 ILE HG23 H N N 164 ILE HD11 H N N 165 ILE HD12 H N N 166 ILE HD13 H N N 167 ILE HXT H N N 168 LEU N N N N 169 LEU CA C N S 170 LEU C C N N 171 LEU O O N N 172 LEU CB C N N 173 LEU CG C N N 174 LEU CD1 C N N 175 LEU CD2 C N N 176 LEU OXT O N N 177 LEU H H N N 178 LEU H2 H N N 179 LEU HA H N N 180 LEU HB2 H N N 181 LEU HB3 H N N 182 LEU HG H N N 183 LEU HD11 H N N 184 LEU HD12 H N N 185 LEU HD13 H N N 186 LEU HD21 H N N 187 LEU HD22 H N N 188 LEU HD23 H N N 189 LEU HXT H N N 190 LYS N N N N 191 LYS CA C N S 192 LYS C C N N 193 LYS O O N N 194 LYS CB C N N 195 LYS CG C N N 196 LYS CD C N N 197 LYS CE C N N 198 LYS NZ N N N 199 LYS OXT O N N 200 LYS H H N N 201 LYS H2 H N N 202 LYS HA H N N 203 LYS HB2 H N N 204 LYS HB3 H N N 205 LYS HG2 H N N 206 LYS HG3 H N N 207 LYS HD2 H N N 208 LYS HD3 H N N 209 LYS HE2 H N N 210 LYS HE3 H N N 211 LYS HZ1 H N N 212 LYS HZ2 H N N 213 LYS HZ3 H N N 214 LYS HXT H N N 215 OCS N N N N 216 OCS CA C N R 217 OCS CB C N N 218 OCS SG S N N 219 OCS C C N N 220 OCS O O N N 221 OCS OXT O N N 222 OCS OD1 O N N 223 OCS OD2 O N N 224 OCS OD3 O N N 225 OCS H H N N 226 OCS H2 H N N 227 OCS HA H N N 228 OCS HB2 H N N 229 OCS HB3 H N N 230 OCS HXT H N N 231 OCS HD2 H N N 232 PHE N N N N 233 PHE CA C N S 234 PHE C C N N 235 PHE O O N N 236 PHE CB C N N 237 PHE CG C Y N 238 PHE CD1 C Y N 239 PHE CD2 C Y N 240 PHE CE1 C Y N 241 PHE CE2 C Y N 242 PHE CZ C Y N 243 PHE OXT O N N 244 PHE H H N N 245 PHE H2 H N N 246 PHE HA H N N 247 PHE HB2 H N N 248 PHE HB3 H N N 249 PHE HD1 H N N 250 PHE HD2 H N N 251 PHE HE1 H N N 252 PHE HE2 H N N 253 PHE HZ H N N 254 PHE HXT H N N 255 PRO N N N N 256 PRO CA C N S 257 PRO C C N N 258 PRO O O N N 259 PRO CB C N N 260 PRO CG C N N 261 PRO CD C N N 262 PRO OXT O N N 263 PRO H H N N 264 PRO HA H N N 265 PRO HB2 H N N 266 PRO HB3 H N N 267 PRO HG2 H N N 268 PRO HG3 H N N 269 PRO HD2 H N N 270 PRO HD3 H N N 271 PRO HXT H N N 272 SER N N N N 273 SER CA C N S 274 SER C C N N 275 SER O O N N 276 SER CB C N N 277 SER OG O N N 278 SER OXT O N N 279 SER H H N N 280 SER H2 H N N 281 SER HA H N N 282 SER HB2 H N N 283 SER HB3 H N N 284 SER HG H N N 285 SER HXT H N N 286 THR N N N N 287 THR CA C N S 288 THR C C N N 289 THR O O N N 290 THR CB C N R 291 THR OG1 O N N 292 THR CG2 C N N 293 THR OXT O N N 294 THR H H N N 295 THR H2 H N N 296 THR HA H N N 297 THR HB H N N 298 THR HG1 H N N 299 THR HG21 H N N 300 THR HG22 H N N 301 THR HG23 H N N 302 THR HXT H N N 303 TRP N N N N 304 TRP CA C N S 305 TRP C C N N 306 TRP O O N N 307 TRP CB C N N 308 TRP CG C Y N 309 TRP CD1 C Y N 310 TRP CD2 C Y N 311 TRP NE1 N Y N 312 TRP CE2 C Y N 313 TRP CE3 C Y N 314 TRP CZ2 C Y N 315 TRP CZ3 C Y N 316 TRP CH2 C Y N 317 TRP OXT O N N 318 TRP H H N N 319 TRP H2 H N N 320 TRP HA H N N 321 TRP HB2 H N N 322 TRP HB3 H N N 323 TRP HD1 H N N 324 TRP HE1 H N N 325 TRP HE3 H N N 326 TRP HZ2 H N N 327 TRP HZ3 H N N 328 TRP HH2 H N N 329 TRP HXT H N N 330 TYR N N N N 331 TYR CA C N S 332 TYR C C N N 333 TYR O O N N 334 TYR CB C N N 335 TYR CG C Y N 336 TYR CD1 C Y N 337 TYR CD2 C Y N 338 TYR CE1 C Y N 339 TYR CE2 C Y N 340 TYR CZ C Y N 341 TYR OH O N N 342 TYR OXT O N N 343 TYR H H N N 344 TYR H2 H N N 345 TYR HA H N N 346 TYR HB2 H N N 347 TYR HB3 H N N 348 TYR HD1 H N N 349 TYR HD2 H N N 350 TYR HE1 H N N 351 TYR HE2 H N N 352 TYR HH H N N 353 TYR HXT H N N 354 VAL N N N N 355 VAL CA C N S 356 VAL C C N N 357 VAL O O N N 358 VAL CB C N N 359 VAL CG1 C N N 360 VAL CG2 C N N 361 VAL OXT O N N 362 VAL H H N N 363 VAL H2 H N N 364 VAL HA H N N 365 VAL HB H N N 366 VAL HG11 H N N 367 VAL HG12 H N N 368 VAL HG13 H N N 369 VAL HG21 H N N 370 VAL HG22 H N N 371 VAL HG23 H N N 372 VAL HXT H N N 373 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 HOH O H1 sing N N 137 HOH O H2 sing N N 138 ILE N CA sing N N 139 ILE N H sing N N 140 ILE N H2 sing N N 141 ILE CA C sing N N 142 ILE CA CB sing N N 143 ILE CA HA sing N N 144 ILE C O doub N N 145 ILE C OXT sing N N 146 ILE CB CG1 sing N N 147 ILE CB CG2 sing N N 148 ILE CB HB sing N N 149 ILE CG1 CD1 sing N N 150 ILE CG1 HG12 sing N N 151 ILE CG1 HG13 sing N N 152 ILE CG2 HG21 sing N N 153 ILE CG2 HG22 sing N N 154 ILE CG2 HG23 sing N N 155 ILE CD1 HD11 sing N N 156 ILE CD1 HD12 sing N N 157 ILE CD1 HD13 sing N N 158 ILE OXT HXT sing N N 159 LEU N CA sing N N 160 LEU N H sing N N 161 LEU N H2 sing N N 162 LEU CA C sing N N 163 LEU CA CB sing N N 164 LEU CA HA sing N N 165 LEU C O doub N N 166 LEU C OXT sing N N 167 LEU CB CG sing N N 168 LEU CB HB2 sing N N 169 LEU CB HB3 sing N N 170 LEU CG CD1 sing N N 171 LEU CG CD2 sing N N 172 LEU CG HG sing N N 173 LEU CD1 HD11 sing N N 174 LEU CD1 HD12 sing N N 175 LEU CD1 HD13 sing N N 176 LEU CD2 HD21 sing N N 177 LEU CD2 HD22 sing N N 178 LEU CD2 HD23 sing N N 179 LEU OXT HXT sing N N 180 LYS N CA sing N N 181 LYS N H sing N N 182 LYS N H2 sing N N 183 LYS CA C sing N N 184 LYS CA CB sing N N 185 LYS CA HA sing N N 186 LYS C O doub N N 187 LYS C OXT sing N N 188 LYS CB CG sing N N 189 LYS CB HB2 sing N N 190 LYS CB HB3 sing N N 191 LYS CG CD sing N N 192 LYS CG HG2 sing N N 193 LYS CG HG3 sing N N 194 LYS CD CE sing N N 195 LYS CD HD2 sing N N 196 LYS CD HD3 sing N N 197 LYS CE NZ sing N N 198 LYS CE HE2 sing N N 199 LYS CE HE3 sing N N 200 LYS NZ HZ1 sing N N 201 LYS NZ HZ2 sing N N 202 LYS NZ HZ3 sing N N 203 LYS OXT HXT sing N N 204 OCS N CA sing N N 205 OCS N H sing N N 206 OCS N H2 sing N N 207 OCS CA CB sing N N 208 OCS CA C sing N N 209 OCS CA HA sing N N 210 OCS CB SG sing N N 211 OCS CB HB2 sing N N 212 OCS CB HB3 sing N N 213 OCS SG OD1 doub N N 214 OCS SG OD2 sing N N 215 OCS SG OD3 doub N N 216 OCS C O doub N N 217 OCS C OXT sing N N 218 OCS OXT HXT sing N N 219 OCS OD2 HD2 sing N N 220 PHE N CA sing N N 221 PHE N H sing N N 222 PHE N H2 sing N N 223 PHE CA C sing N N 224 PHE CA CB sing N N 225 PHE CA HA sing N N 226 PHE C O doub N N 227 PHE C OXT sing N N 228 PHE CB CG sing N N 229 PHE CB HB2 sing N N 230 PHE CB HB3 sing N N 231 PHE CG CD1 doub Y N 232 PHE CG CD2 sing Y N 233 PHE CD1 CE1 sing Y N 234 PHE CD1 HD1 sing N N 235 PHE CD2 CE2 doub Y N 236 PHE CD2 HD2 sing N N 237 PHE CE1 CZ doub Y N 238 PHE CE1 HE1 sing N N 239 PHE CE2 CZ sing Y N 240 PHE CE2 HE2 sing N N 241 PHE CZ HZ sing N N 242 PHE OXT HXT sing N N 243 PRO N CA sing N N 244 PRO N CD sing N N 245 PRO N H sing N N 246 PRO CA C sing N N 247 PRO CA CB sing N N 248 PRO CA HA sing N N 249 PRO C O doub N N 250 PRO C OXT sing N N 251 PRO CB CG sing N N 252 PRO CB HB2 sing N N 253 PRO CB HB3 sing N N 254 PRO CG CD sing N N 255 PRO CG HG2 sing N N 256 PRO CG HG3 sing N N 257 PRO CD HD2 sing N N 258 PRO CD HD3 sing N N 259 PRO OXT HXT sing N N 260 SER N CA sing N N 261 SER N H sing N N 262 SER N H2 sing N N 263 SER CA C sing N N 264 SER CA CB sing N N 265 SER CA HA sing N N 266 SER C O doub N N 267 SER C OXT sing N N 268 SER CB OG sing N N 269 SER CB HB2 sing N N 270 SER CB HB3 sing N N 271 SER OG HG sing N N 272 SER OXT HXT sing N N 273 THR N CA sing N N 274 THR N H sing N N 275 THR N H2 sing N N 276 THR CA C sing N N 277 THR CA CB sing N N 278 THR CA HA sing N N 279 THR C O doub N N 280 THR C OXT sing N N 281 THR CB OG1 sing N N 282 THR CB CG2 sing N N 283 THR CB HB sing N N 284 THR OG1 HG1 sing N N 285 THR CG2 HG21 sing N N 286 THR CG2 HG22 sing N N 287 THR CG2 HG23 sing N N 288 THR OXT HXT sing N N 289 TRP N CA sing N N 290 TRP N H sing N N 291 TRP N H2 sing N N 292 TRP CA C sing N N 293 TRP CA CB sing N N 294 TRP CA HA sing N N 295 TRP C O doub N N 296 TRP C OXT sing N N 297 TRP CB CG sing N N 298 TRP CB HB2 sing N N 299 TRP CB HB3 sing N N 300 TRP CG CD1 doub Y N 301 TRP CG CD2 sing Y N 302 TRP CD1 NE1 sing Y N 303 TRP CD1 HD1 sing N N 304 TRP CD2 CE2 doub Y N 305 TRP CD2 CE3 sing Y N 306 TRP NE1 CE2 sing Y N 307 TRP NE1 HE1 sing N N 308 TRP CE2 CZ2 sing Y N 309 TRP CE3 CZ3 doub Y N 310 TRP CE3 HE3 sing N N 311 TRP CZ2 CH2 doub Y N 312 TRP CZ2 HZ2 sing N N 313 TRP CZ3 CH2 sing Y N 314 TRP CZ3 HZ3 sing N N 315 TRP CH2 HH2 sing N N 316 TRP OXT HXT sing N N 317 TYR N CA sing N N 318 TYR N H sing N N 319 TYR N H2 sing N N 320 TYR CA C sing N N 321 TYR CA CB sing N N 322 TYR CA HA sing N N 323 TYR C O doub N N 324 TYR C OXT sing N N 325 TYR CB CG sing N N 326 TYR CB HB2 sing N N 327 TYR CB HB3 sing N N 328 TYR CG CD1 doub Y N 329 TYR CG CD2 sing Y N 330 TYR CD1 CE1 sing Y N 331 TYR CD1 HD1 sing N N 332 TYR CD2 CE2 doub Y N 333 TYR CD2 HD2 sing N N 334 TYR CE1 CZ doub Y N 335 TYR CE1 HE1 sing N N 336 TYR CE2 CZ sing Y N 337 TYR CE2 HE2 sing N N 338 TYR CZ OH sing N N 339 TYR OH HH sing N N 340 TYR OXT HXT sing N N 341 VAL N CA sing N N 342 VAL N H sing N N 343 VAL N H2 sing N N 344 VAL CA C sing N N 345 VAL CA CB sing N N 346 VAL CA HA sing N N 347 VAL C O doub N N 348 VAL C OXT sing N N 349 VAL CB CG1 sing N N 350 VAL CB CG2 sing N N 351 VAL CB HB sing N N 352 VAL CG1 HG11 sing N N 353 VAL CG1 HG12 sing N N 354 VAL CG1 HG13 sing N N 355 VAL CG2 HG21 sing N N 356 VAL CG2 HG22 sing N N 357 VAL CG2 HG23 sing N N 358 VAL OXT HXT sing N N 359 # _pdbx_audit_support.funding_organization 'Howard Hughes Medical Institute (HHMI)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'in silico model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.details 'de novo designed model' # _space_group.name_H-M_alt 'P 21 21 21' _space_group.name_Hall 'P 2ac 2ab' _space_group.IT_number 19 _space_group.crystal_system orthorhombic _space_group.id 1 # _atom_sites.entry_id 9YNM _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.026159 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016166 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013376 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? 9.55732 6.39887 ? ? 1.23737 29.19336 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ # loop_ #