data_9YRD # _entry.id 9YRD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.417 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9YRD pdb_00009yrd 10.2210/pdb9yrd/pdb WWPDB D_1000301139 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2026-10-21 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9YRD _pdbx_database_status.recvd_initial_deposition_date 2025-10-16 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible N # _pdbx_contact_author.id 2 _pdbx_contact_author.email martin.egli@vanderbilt.edu _pdbx_contact_author.name_first Martin _pdbx_contact_author.name_last Egli _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-4145-356X # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Harp, J.M.' 1 0000-0002-9116-5606 'Egli, M.' 2 0000-0003-4145-356X # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title ;Chiral-4prime-methyl-alpha-(L)-threofuranosyl nucleic acids (Me-TNA): Synthesis, structure, binding affinity, nuclease stability, and polymerase recognition ; _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mikami, A.' 1 ? primary 'Datta, D.' 2 ? primary 'Kundu, J.' 3 ? primary 'Kumar, V.' 4 ? primary 'Erande, N.' 5 ? primary 'Medina, E.' 6 ? primary 'Maola, V.A.' 7 ? primary 'Lee, E.M.' 8 ? primary 'Matsuda, S.' 9 ? primary 'Harp, J.' 10 0000-0002-9116-5606 primary 'Egli, M.' 11 0000-0003-4145-356X primary 'Chaput, J.C.' 12 ? primary 'Manoharan, M.' 13 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'RNA oligonucleotide' 2579.490 2 ? ? ? ? 2 non-polymer nat '1-(5-deoxy-3-O-phosphono-alpha-L-arabinofuranosyl)-5-methylpyrimidine-2,4(1H,3H)-dione' 322.208 2 ? ? ? ? 3 non-polymer syn "CYTIDINE-5'-MONOPHOSPHATE" 323.197 2 ? ? ? ? 4 non-polymer syn "GUANOSINE-5'-MONOPHOSPHATE" 363.221 2 ? ? ? ? 5 water nat water 18.015 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(CBV)GAAU(T4X)CG' _entity_poly.pdbx_seq_one_letter_code_can CGAAUXCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '1-(5-deoxy-3-O-phosphono-alpha-L-arabinofuranosyl)-5-methylpyrimidine-2,4(1H,3H)-dione' A1CY0 3 "CYTIDINE-5'-MONOPHOSPHATE" C 4 "GUANOSINE-5'-MONOPHOSPHATE" 5GP 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 CBV n 1 2 G n 1 3 A n 1 4 A n 1 5 U n 1 6 T4X n 1 7 C n 1 8 G n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 8 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'synthetic construct' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 32630 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'synthetic construct' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 32630 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5GP non-polymer . "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 A1CY0 'RNA linking' . '1-(5-deoxy-3-O-phosphono-alpha-L-arabinofuranosyl)-5-methylpyrimidine-2,4(1H,3H)-dione' ? 'C10 H15 N2 O8 P' 322.208 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CBV 'RNA linking' n ;5-BROMOCYTIDINE 5'-(DIHYDROGEN PHOSPHATE) ; ? 'C9 H13 Br N3 O8 P' 402.093 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 T4X non-polymer . '3-oxidanyl-5-[4-(trifluoromethyloxy)phenyl]benzoic acid' ? 'C14 H9 F3 O4' 298.214 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 CBV 1 1 1 CBV CBV A . n A 1 2 G 2 2 2 G G A . n A 1 3 A 3 3 3 A A A . n A 1 4 A 4 4 4 A A A . n A 1 5 U 5 5 5 U U A . n A 1 6 T4X 6 6 ? ? ? A . n A 1 7 C 7 7 ? ? ? A . n A 1 8 G 8 8 ? ? ? A . n B 1 1 CBV 1 1 1 CBV CBV B . n B 1 2 G 2 2 2 G G B . n B 1 3 A 3 3 3 A A B . n B 1 4 A 4 4 4 A A B . n B 1 5 U 5 5 5 U U B . n B 1 6 T4X 6 6 ? ? ? B . n B 1 7 C 7 7 ? ? ? B . n B 1 8 G 8 8 ? ? ? B . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id A1CY0 _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id A1CY0 _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 A1CY0 1 101 6 A1CY0 T4X A . D 3 C 1 102 7 C C A . E 4 5GP 1 103 8 5GP G A . F 3 C 1 101 7 C C B . G 4 5GP 1 102 8 5GP G B . H 2 A1CY0 1 103 6 A1CY0 T4X B . I 5 HOH 1 201 1 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_reference_DOI _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.21.1_5286 ? 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? DIALS ? ? ? . ? 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? DIALS ? ? ? . ? 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? HKL2Map ? ? ? . ? 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 9YRD _cell.details ? _cell.formula_units_Z ? _cell.length_a 44.791 _cell.length_a_esd ? _cell.length_b 44.791 _cell.length_b_esd ? _cell.length_c 67.761 _cell.length_c_esd ? _cell.volume 117728.680 _cell.volume_esd ? _cell.Z_PDB 18 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9YRD _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall 'R 3' _symmetry.space_group_name_H-M 'H 3' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9YRD _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.54 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 51.49 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;Drops contained 400 nL of 1 mM RNA and 400 nL of buffer containing 10% MPD, 12 mM spermine 4 HCl, 80 mM potassium chloride, and 40 mM sodium cacodylate ; _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 9M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2019-06-05 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9184 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 21-ID-D' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9184 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 21-ID-D _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 69.36 _reflns.entry_id 9YRD _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.60 _reflns.d_resolution_low 22.4 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 1740 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 93.41 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 9.8 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 5.46 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.979 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.60 _reflns_shell.d_res_low 2.69 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 178 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.735 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 82.67 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9YRD _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.60 _refine.ls_d_res_low 22.40 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 1498 _refine.ls_number_reflns_R_free 171 _refine.ls_number_reflns_R_work 2749 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 93.41 _refine.ls_percent_reflns_R_free 5.86 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2609 _refine.ls_R_factor_R_free 0.3032 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2582 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.08 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 38.6892 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.2557 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.60 _refine_hist.d_res_low 22.40 _refine_hist.number_atoms_solvent 1 _refine_hist.number_atoms_total 337 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 210 _refine_hist.pdbx_number_atoms_ligand 126 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0019 ? 368 ? f_bond_d ? ? ? 'X-RAY DIFFRACTION' ? 1.2675 ? 562 ? f_angle_d ? ? ? 'X-RAY DIFFRACTION' ? 0.0341 ? 76 ? f_chiral_restr ? ? ? 'X-RAY DIFFRACTION' ? 0.0014 ? 16 ? f_plane_restr ? ? ? 'X-RAY DIFFRACTION' ? 23.8852 ? 226 ? f_dihedral_angle_d ? ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.60 _refine_ls_shell.d_res_low 2.69 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 171 _refine_ls_shell.number_reflns_R_work 2749 _refine_ls_shell.percent_reflns_obs 93.41 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.2582 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.correlation_coeff_Fo_to_Fc ? _refine_ls_shell.correlation_coeff_Fo_to_Fc_free ? _refine_ls_shell.correlation_coeff_I_to_Fcsqd_work ? _refine_ls_shell.correlation_coeff_I_to_Fcsqd_free ? _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? _refine_ls_shell.R_factor_R_free 0.3032 # _struct.entry_id 9YRD _struct.title 'RNA oligonucleotides containing 4prime-(S)-methyl-alpha-(L)-threofuranosyl nucleic acid.' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9YRD _struct_keywords.text 'TNA, RNA duplex, threofuranosyl nuclei acid, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 3 ? G N N 4 ? H N N 2 ? I N N 5 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9YRD _struct_ref.pdbx_db_accession 9YRD _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9YRD A 1 ? 8 ? 9YRD 1 ? 8 ? 1 8 2 1 9YRD B 1 ? 8 ? 9YRD 1 ? 8 ? 1 8 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? A CBV 1 "O3'" ? ? ? 1_555 A G 2 P ? ? A CBV 1 A G 2 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale2 covale both ? A U 5 "O3'" ? ? ? 1_555 C A1CY0 . P ? ? A U 5 A A1CY0 101 1_555 ? ? ? ? ? ? ? 1.602 ? ? covale3 covale one ? C A1CY0 . "O2'" ? ? ? 1_555 F C . P ? ? A A1CY0 101 B C 101 1_555 ? ? ? ? ? ? ? 1.594 ? ? covale4 covale both ? D C . "O3'" ? ? ? 1_555 E 5GP . P ? ? A C 102 A 5GP 103 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale5 covale one ? D C . P ? ? ? 1_555 H A1CY0 . "O2'" ? ? A C 102 B A1CY0 103 1_555 ? ? ? ? ? ? ? 1.594 ? ? covale6 covale one ? B CBV 1 "O3'" ? ? ? 1_555 B G 2 P ? ? B CBV 1 B G 2 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale7 covale both ? B U 5 "O3'" ? ? ? 1_555 H A1CY0 . P ? ? B U 5 B A1CY0 103 1_555 ? ? ? ? ? ? ? 1.603 ? ? covale8 covale both ? F C . "O3'" ? ? ? 1_555 G 5GP . P ? ? B C 101 B 5GP 102 1_555 ? ? ? ? ? ? ? 1.607 ? ? hydrog1 hydrog ? ? A A 4 N1 ? ? ? 1_555 B U 5 N3 ? ? A A 4 B U 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A A 4 N6 ? ? ? 1_555 B U 5 O4 ? ? A A 4 B U 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A U 5 N3 ? ? ? 1_555 B A 4 N1 ? ? A U 5 B A 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A U 5 O4 ? ? ? 1_555 B A 4 N6 ? ? A U 5 B A 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _pdbx_entry_details.entry_id 9YRD _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification N # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -y,x-y,z 3 -x+y,-x,z 4 x+1/3,y+2/3,z+2/3 5 -y+1/3,x-y+2/3,z+2/3 6 -x+y+1/3,-x+2/3,z+2/3 7 x+2/3,y+1/3,z+1/3 8 -y+2/3,x-y+1/3,z+1/3 9 -x+y+2/3,-x+1/3,z+1/3 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A T4X 6 ? A T4X 6 2 1 Y 1 A C 7 ? A C 7 3 1 Y 1 A G 8 ? A G 8 4 1 Y 1 B T4X 6 ? B T4X 6 5 1 Y 1 B C 7 ? B C 7 6 1 Y 1 B G 8 ? B G 8 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5GP P P N N 1 5GP OP1 O N N 2 5GP OP3 O N N 3 5GP OP2 O N N 4 5GP "O5'" O N N 5 5GP "C5'" C N N 6 5GP "C4'" C N R 7 5GP "O4'" O N N 8 5GP "C3'" C N S 9 5GP "O3'" O N N 10 5GP "C2'" C N R 11 5GP "O2'" O N N 12 5GP "C1'" C N R 13 5GP N9 N Y N 14 5GP C8 C Y N 15 5GP N7 N Y N 16 5GP C5 C Y N 17 5GP C6 C N N 18 5GP O6 O N N 19 5GP N1 N N N 20 5GP C2 C N N 21 5GP N2 N N N 22 5GP N3 N N N 23 5GP C4 C Y N 24 5GP HOP3 H N N 25 5GP HOP2 H N N 26 5GP "H5'" H N N 27 5GP "H5''" H N N 28 5GP "H4'" H N N 29 5GP "H3'" H N N 30 5GP "HO3'" H N N 31 5GP "H2'" H N N 32 5GP "HO2'" H N N 33 5GP "H1'" H N N 34 5GP H8 H N N 35 5GP H1 H N N 36 5GP HN21 H N N 37 5GP HN22 H N N 38 A OP3 O N N 39 A P P N N 40 A OP1 O N N 41 A OP2 O N N 42 A "O5'" O N N 43 A "C5'" C N N 44 A "C4'" C N R 45 A "O4'" O N N 46 A "C3'" C N S 47 A "O3'" O N N 48 A "C2'" C N R 49 A "O2'" O N N 50 A "C1'" C N R 51 A N9 N Y N 52 A C8 C Y N 53 A N7 N Y N 54 A C5 C Y N 55 A C6 C Y N 56 A N6 N N N 57 A N1 N Y N 58 A C2 C Y N 59 A N3 N Y N 60 A C4 C Y N 61 A HOP3 H N N 62 A HOP2 H N N 63 A "H5'" H N N 64 A "H5''" H N N 65 A "H4'" H N N 66 A "H3'" H N N 67 A "HO3'" H N N 68 A "H2'" H N N 69 A "HO2'" H N N 70 A "H1'" H N N 71 A H8 H N N 72 A H61 H N N 73 A H62 H N N 74 A H2 H N N 75 A1CY0 "C1'" C N R 76 A1CY0 C2 C N N 77 A1CY0 "C2'" C N R 78 A1CY0 "C3'" C N R 79 A1CY0 C4 C N N 80 A1CY0 "C4'" C N S 81 A1CY0 C5 C N N 82 A1CY0 "C5'" C N N 83 A1CY0 C6 C N N 84 A1CY0 C7 C N N 85 A1CY0 N1 N N N 86 A1CY0 N3 N N N 87 A1CY0 O2 O N N 88 A1CY0 "O2'" O N N 89 A1CY0 "O3'" O N N 90 A1CY0 O4 O N N 91 A1CY0 "O4'" O N N 92 A1CY0 OP1 O N N 93 A1CY0 OP2 O N N 94 A1CY0 P P N N 95 A1CY0 "H1'1" H N N 96 A1CY0 "H2'1" H N N 97 A1CY0 "H3'1" H N N 98 A1CY0 "H4'1" H N N 99 A1CY0 "H5'3" H N N 100 A1CY0 "H5'1" H N N 101 A1CY0 "H5'2" H N N 102 A1CY0 H61 H N N 103 A1CY0 H72 H N N 104 A1CY0 H71 H N N 105 A1CY0 H73 H N N 106 A1CY0 H31 H N N 107 A1CY0 "H2'2" H N N 108 A1CY0 OP3 O N N 109 A1CY0 H1 H N N 110 A1CY0 H2 H N N 111 C OP3 O N N 112 C P P N N 113 C OP1 O N N 114 C OP2 O N N 115 C "O5'" O N N 116 C "C5'" C N N 117 C "C4'" C N R 118 C "O4'" O N N 119 C "C3'" C N S 120 C "O3'" O N N 121 C "C2'" C N R 122 C "O2'" O N N 123 C "C1'" C N R 124 C N1 N N N 125 C C2 C N N 126 C O2 O N N 127 C N3 N N N 128 C C4 C N N 129 C N4 N N N 130 C C5 C N N 131 C C6 C N N 132 C HOP3 H N N 133 C HOP2 H N N 134 C "H5'" H N N 135 C "H5''" H N N 136 C "H4'" H N N 137 C "H3'" H N N 138 C "HO3'" H N N 139 C "H2'" H N N 140 C "HO2'" H N N 141 C "H1'" H N N 142 C H41 H N N 143 C H42 H N N 144 C H5 H N N 145 C H6 H N N 146 CBV OP2 O N N 147 CBV P P N N 148 CBV OP3 O N N 149 CBV OP1 O N N 150 CBV "O5'" O N N 151 CBV "C5'" C N N 152 CBV "C4'" C N R 153 CBV "O4'" O N N 154 CBV "C3'" C N S 155 CBV "O3'" O N N 156 CBV "C2'" C N R 157 CBV "O2'" O N N 158 CBV "C1'" C N R 159 CBV N1 N N N 160 CBV C2 C N N 161 CBV O2 O N N 162 CBV N3 N N N 163 CBV C4 C N N 164 CBV N4 N N N 165 CBV C5 C N N 166 CBV C6 C N N 167 CBV BR BR N N 168 CBV HOP2 H N N 169 CBV HOP3 H N N 170 CBV "H5'" H N N 171 CBV "H5''" H N N 172 CBV "H4'" H N N 173 CBV "H3'" H N N 174 CBV "HO3'" H N N 175 CBV "H2''" H N N 176 CBV "HO2'" H N N 177 CBV "H1'" H N N 178 CBV H41 H N N 179 CBV H42 H N N 180 CBV H6 H N N 181 G OP3 O N N 182 G P P N N 183 G OP1 O N N 184 G OP2 O N N 185 G "O5'" O N N 186 G "C5'" C N N 187 G "C4'" C N R 188 G "O4'" O N N 189 G "C3'" C N S 190 G "O3'" O N N 191 G "C2'" C N R 192 G "O2'" O N N 193 G "C1'" C N R 194 G N9 N Y N 195 G C8 C Y N 196 G N7 N Y N 197 G C5 C Y N 198 G C6 C N N 199 G O6 O N N 200 G N1 N N N 201 G C2 C N N 202 G N2 N N N 203 G N3 N N N 204 G C4 C Y N 205 G HOP3 H N N 206 G HOP2 H N N 207 G "H5'" H N N 208 G "H5''" H N N 209 G "H4'" H N N 210 G "H3'" H N N 211 G "HO3'" H N N 212 G "H2'" H N N 213 G "HO2'" H N N 214 G "H1'" H N N 215 G H8 H N N 216 G H1 H N N 217 G H21 H N N 218 G H22 H N N 219 HOH O O N N 220 HOH H1 H N N 221 HOH H2 H N N 222 T4X C10 C Y N 223 T4X C13 C Y N 224 T4X C20 C Y N 225 T4X C21 C Y N 226 T4X O01 O N N 227 T4X C02 C N N 228 T4X O03 O N N 229 T4X C04 C Y N 230 T4X C05 C Y N 231 T4X C06 C Y N 232 T4X O07 O N N 233 T4X C08 C Y N 234 T4X C09 C Y N 235 T4X C11 C Y N 236 T4X C12 C Y N 237 T4X C14 C Y N 238 T4X O15 O N N 239 T4X C16 C N N 240 T4X F17 F N N 241 T4X F18 F N N 242 T4X F19 F N N 243 T4X H1 H N N 244 T4X H2 H N N 245 T4X H3 H N N 246 T4X H4 H N N 247 T4X H5 H N N 248 T4X H6 H N N 249 T4X H7 H N N 250 T4X H8 H N N 251 T4X H9 H N N 252 U OP3 O N N 253 U P P N N 254 U OP1 O N N 255 U OP2 O N N 256 U "O5'" O N N 257 U "C5'" C N N 258 U "C4'" C N R 259 U "O4'" O N N 260 U "C3'" C N S 261 U "O3'" O N N 262 U "C2'" C N R 263 U "O2'" O N N 264 U "C1'" C N R 265 U N1 N N N 266 U C2 C N N 267 U O2 O N N 268 U N3 N N N 269 U C4 C N N 270 U O4 O N N 271 U C5 C N N 272 U C6 C N N 273 U HOP3 H N N 274 U HOP2 H N N 275 U "H5'" H N N 276 U "H5''" H N N 277 U "H4'" H N N 278 U "H3'" H N N 279 U "HO3'" H N N 280 U "H2'" H N N 281 U "HO2'" H N N 282 U "H1'" H N N 283 U H3 H N N 284 U H5 H N N 285 U H6 H N N 286 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5GP P OP1 doub N N 1 5GP P OP3 sing N N 2 5GP P OP2 sing N N 3 5GP P "O5'" sing N N 4 5GP OP3 HOP3 sing N N 5 5GP OP2 HOP2 sing N N 6 5GP "O5'" "C5'" sing N N 7 5GP "C5'" "C4'" sing N N 8 5GP "C5'" "H5'" sing N N 9 5GP "C5'" "H5''" sing N N 10 5GP "C4'" "O4'" sing N N 11 5GP "C4'" "C3'" sing N N 12 5GP "C4'" "H4'" sing N N 13 5GP "O4'" "C1'" sing N N 14 5GP "C3'" "O3'" sing N N 15 5GP "C3'" "C2'" sing N N 16 5GP "C3'" "H3'" sing N N 17 5GP "O3'" "HO3'" sing N N 18 5GP "C2'" "O2'" sing N N 19 5GP "C2'" "C1'" sing N N 20 5GP "C2'" "H2'" sing N N 21 5GP "O2'" "HO2'" sing N N 22 5GP "C1'" N9 sing N N 23 5GP "C1'" "H1'" sing N N 24 5GP N9 C8 sing Y N 25 5GP N9 C4 sing Y N 26 5GP C8 N7 doub Y N 27 5GP C8 H8 sing N N 28 5GP N7 C5 sing Y N 29 5GP C5 C6 sing N N 30 5GP C5 C4 doub Y N 31 5GP C6 O6 doub N N 32 5GP C6 N1 sing N N 33 5GP N1 C2 sing N N 34 5GP N1 H1 sing N N 35 5GP C2 N2 sing N N 36 5GP C2 N3 doub N N 37 5GP N2 HN21 sing N N 38 5GP N2 HN22 sing N N 39 5GP N3 C4 sing N N 40 A OP3 P sing N N 41 A OP3 HOP3 sing N N 42 A P OP1 doub N N 43 A P OP2 sing N N 44 A P "O5'" sing N N 45 A OP2 HOP2 sing N N 46 A "O5'" "C5'" sing N N 47 A "C5'" "C4'" sing N N 48 A "C5'" "H5'" sing N N 49 A "C5'" "H5''" sing N N 50 A "C4'" "O4'" sing N N 51 A "C4'" "C3'" sing N N 52 A "C4'" "H4'" sing N N 53 A "O4'" "C1'" sing N N 54 A "C3'" "O3'" sing N N 55 A "C3'" "C2'" sing N N 56 A "C3'" "H3'" sing N N 57 A "O3'" "HO3'" sing N N 58 A "C2'" "O2'" sing N N 59 A "C2'" "C1'" sing N N 60 A "C2'" "H2'" sing N N 61 A "O2'" "HO2'" sing N N 62 A "C1'" N9 sing N N 63 A "C1'" "H1'" sing N N 64 A N9 C8 sing Y N 65 A N9 C4 sing Y N 66 A C8 N7 doub Y N 67 A C8 H8 sing N N 68 A N7 C5 sing Y N 69 A C5 C6 sing Y N 70 A C5 C4 doub Y N 71 A C6 N6 sing N N 72 A C6 N1 doub Y N 73 A N6 H61 sing N N 74 A N6 H62 sing N N 75 A N1 C2 sing Y N 76 A C2 N3 doub Y N 77 A C2 H2 sing N N 78 A N3 C4 sing Y N 79 A1CY0 P OP1 doub N N 80 A1CY0 "C3'" "O3'" sing N N 81 A1CY0 "C4'" "C3'" sing N N 82 A1CY0 "C5'" "C4'" sing N N 83 A1CY0 "O4'" "C4'" sing N N 84 A1CY0 "C1'" "O4'" sing N N 85 A1CY0 C2 N1 sing N N 86 A1CY0 C4 N3 sing N N 87 A1CY0 C7 C5 sing N N 88 A1CY0 C6 C5 doub N N 89 A1CY0 C5 C4 sing N N 90 A1CY0 O4 C4 doub N N 91 A1CY0 N3 C2 sing N N 92 A1CY0 O2 C2 doub N N 93 A1CY0 N1 "C1'" sing N N 94 A1CY0 "C2'" "C1'" sing N N 95 A1CY0 "O2'" "C2'" sing N N 96 A1CY0 "O3'" P sing N N 97 A1CY0 OP2 P sing N N 98 A1CY0 "C3'" "C2'" sing N N 99 A1CY0 N1 C6 sing N N 100 A1CY0 "C1'" "H1'1" sing N N 101 A1CY0 "C2'" "H2'1" sing N N 102 A1CY0 "C3'" "H3'1" sing N N 103 A1CY0 "C4'" "H4'1" sing N N 104 A1CY0 "C5'" "H5'3" sing N N 105 A1CY0 "C5'" "H5'1" sing N N 106 A1CY0 "C5'" "H5'2" sing N N 107 A1CY0 C6 H61 sing N N 108 A1CY0 C7 H72 sing N N 109 A1CY0 C7 H71 sing N N 110 A1CY0 C7 H73 sing N N 111 A1CY0 N3 H31 sing N N 112 A1CY0 "O2'" "H2'2" sing N N 113 A1CY0 P OP3 sing N N 114 A1CY0 OP2 H1 sing N N 115 A1CY0 OP3 H2 sing N N 116 C OP3 P sing N N 117 C OP3 HOP3 sing N N 118 C P OP1 doub N N 119 C P OP2 sing N N 120 C P "O5'" sing N N 121 C OP2 HOP2 sing N N 122 C "O5'" "C5'" sing N N 123 C "C5'" "C4'" sing N N 124 C "C5'" "H5'" sing N N 125 C "C5'" "H5''" sing N N 126 C "C4'" "O4'" sing N N 127 C "C4'" "C3'" sing N N 128 C "C4'" "H4'" sing N N 129 C "O4'" "C1'" sing N N 130 C "C3'" "O3'" sing N N 131 C "C3'" "C2'" sing N N 132 C "C3'" "H3'" sing N N 133 C "O3'" "HO3'" sing N N 134 C "C2'" "O2'" sing N N 135 C "C2'" "C1'" sing N N 136 C "C2'" "H2'" sing N N 137 C "O2'" "HO2'" sing N N 138 C "C1'" N1 sing N N 139 C "C1'" "H1'" sing N N 140 C N1 C2 sing N N 141 C N1 C6 sing N N 142 C C2 O2 doub N N 143 C C2 N3 sing N N 144 C N3 C4 doub N N 145 C C4 N4 sing N N 146 C C4 C5 sing N N 147 C N4 H41 sing N N 148 C N4 H42 sing N N 149 C C5 C6 doub N N 150 C C5 H5 sing N N 151 C C6 H6 sing N N 152 CBV OP2 P sing N N 153 CBV OP2 HOP2 sing N N 154 CBV P OP3 sing N N 155 CBV P OP1 doub N N 156 CBV P "O5'" sing N N 157 CBV OP3 HOP3 sing N N 158 CBV "O5'" "C5'" sing N N 159 CBV "C5'" "C4'" sing N N 160 CBV "C5'" "H5'" sing N N 161 CBV "C5'" "H5''" sing N N 162 CBV "C4'" "O4'" sing N N 163 CBV "C4'" "C3'" sing N N 164 CBV "C4'" "H4'" sing N N 165 CBV "O4'" "C1'" sing N N 166 CBV "C3'" "O3'" sing N N 167 CBV "C3'" "C2'" sing N N 168 CBV "C3'" "H3'" sing N N 169 CBV "O3'" "HO3'" sing N N 170 CBV "C2'" "O2'" sing N N 171 CBV "C2'" "C1'" sing N N 172 CBV "C2'" "H2''" sing N N 173 CBV "O2'" "HO2'" sing N N 174 CBV "C1'" N1 sing N N 175 CBV "C1'" "H1'" sing N N 176 CBV N1 C2 sing N N 177 CBV N1 C6 sing N N 178 CBV C2 O2 doub N N 179 CBV C2 N3 sing N N 180 CBV N3 C4 doub N N 181 CBV C4 N4 sing N N 182 CBV C4 C5 sing N N 183 CBV N4 H41 sing N N 184 CBV N4 H42 sing N N 185 CBV C5 C6 doub N N 186 CBV C5 BR sing N N 187 CBV C6 H6 sing N N 188 G OP3 P sing N N 189 G OP3 HOP3 sing N N 190 G P OP1 doub N N 191 G P OP2 sing N N 192 G P "O5'" sing N N 193 G OP2 HOP2 sing N N 194 G "O5'" "C5'" sing N N 195 G "C5'" "C4'" sing N N 196 G "C5'" "H5'" sing N N 197 G "C5'" "H5''" sing N N 198 G "C4'" "O4'" sing N N 199 G "C4'" "C3'" sing N N 200 G "C4'" "H4'" sing N N 201 G "O4'" "C1'" sing N N 202 G "C3'" "O3'" sing N N 203 G "C3'" "C2'" sing N N 204 G "C3'" "H3'" sing N N 205 G "O3'" "HO3'" sing N N 206 G "C2'" "O2'" sing N N 207 G "C2'" "C1'" sing N N 208 G "C2'" "H2'" sing N N 209 G "O2'" "HO2'" sing N N 210 G "C1'" N9 sing N N 211 G "C1'" "H1'" sing N N 212 G N9 C8 sing Y N 213 G N9 C4 sing Y N 214 G C8 N7 doub Y N 215 G C8 H8 sing N N 216 G N7 C5 sing Y N 217 G C5 C6 sing N N 218 G C5 C4 doub Y N 219 G C6 O6 doub N N 220 G C6 N1 sing N N 221 G N1 C2 sing N N 222 G N1 H1 sing N N 223 G C2 N2 sing N N 224 G C2 N3 doub N N 225 G N2 H21 sing N N 226 G N2 H22 sing N N 227 G N3 C4 sing N N 228 HOH O H1 sing N N 229 HOH O H2 sing N N 230 T4X O03 C02 doub N N 231 T4X C02 O01 sing N N 232 T4X C02 C04 sing N N 233 T4X C05 C04 doub Y N 234 T4X C05 C06 sing Y N 235 T4X C04 C10 sing Y N 236 T4X O07 C06 sing N N 237 T4X C06 C08 doub Y N 238 T4X C10 C09 doub Y N 239 T4X C08 C09 sing Y N 240 T4X C09 C11 sing N N 241 T4X C11 C21 doub Y N 242 T4X C11 C12 sing Y N 243 T4X C21 C20 sing Y N 244 T4X C12 C13 doub Y N 245 T4X C20 C14 doub Y N 246 T4X C13 C14 sing Y N 247 T4X C14 O15 sing N N 248 T4X F17 C16 sing N N 249 T4X F19 C16 sing N N 250 T4X C16 O15 sing N N 251 T4X C16 F18 sing N N 252 T4X C10 H1 sing N N 253 T4X C13 H2 sing N N 254 T4X C20 H3 sing N N 255 T4X C21 H4 sing N N 256 T4X O01 H5 sing N N 257 T4X C05 H6 sing N N 258 T4X O07 H7 sing N N 259 T4X C08 H8 sing N N 260 T4X C12 H9 sing N N 261 U OP3 P sing N N 262 U OP3 HOP3 sing N N 263 U P OP1 doub N N 264 U P OP2 sing N N 265 U P "O5'" sing N N 266 U OP2 HOP2 sing N N 267 U "O5'" "C5'" sing N N 268 U "C5'" "C4'" sing N N 269 U "C5'" "H5'" sing N N 270 U "C5'" "H5''" sing N N 271 U "C4'" "O4'" sing N N 272 U "C4'" "C3'" sing N N 273 U "C4'" "H4'" sing N N 274 U "O4'" "C1'" sing N N 275 U "C3'" "O3'" sing N N 276 U "C3'" "C2'" sing N N 277 U "C3'" "H3'" sing N N 278 U "O3'" "HO3'" sing N N 279 U "C2'" "O2'" sing N N 280 U "C2'" "C1'" sing N N 281 U "C2'" "H2'" sing N N 282 U "O2'" "HO2'" sing N N 283 U "C1'" N1 sing N N 284 U "C1'" "H1'" sing N N 285 U N1 C2 sing N N 286 U N1 C6 sing N N 287 U C2 O2 doub N N 288 U C2 N3 sing N N 289 U N3 C4 sing N N 290 U N3 H3 sing N N 291 U C4 O4 doub N N 292 U C4 C5 sing N N 293 U C5 C6 doub N N 294 U C5 H5 sing N N 295 U C6 H6 sing N N 296 # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A A 4 1_555 B U 5 1_555 -0.136 0.331 -0.512 3.851 -18.303 15.622 1 A_A4:U5_B A 4 ? B 5 ? 20 1 1 A U 5 1_555 B A 4 1_555 -1.255 -0.016 -0.445 9.167 -10.022 4.993 2 A_U5:A4_B A 5 ? B 4 ? 20 1 # _ndb_struct_na_base_pair_step.model_number 1 _ndb_struct_na_base_pair_step.i_label_asym_id_1 A _ndb_struct_na_base_pair_step.i_label_comp_id_1 A _ndb_struct_na_base_pair_step.i_label_seq_id_1 4 _ndb_struct_na_base_pair_step.i_symmetry_1 1_555 _ndb_struct_na_base_pair_step.j_label_asym_id_1 B _ndb_struct_na_base_pair_step.j_label_comp_id_1 U _ndb_struct_na_base_pair_step.j_label_seq_id_1 5 _ndb_struct_na_base_pair_step.j_symmetry_1 1_555 _ndb_struct_na_base_pair_step.i_label_asym_id_2 A _ndb_struct_na_base_pair_step.i_label_comp_id_2 U _ndb_struct_na_base_pair_step.i_label_seq_id_2 5 _ndb_struct_na_base_pair_step.i_symmetry_2 1_555 _ndb_struct_na_base_pair_step.j_label_asym_id_2 B _ndb_struct_na_base_pair_step.j_label_comp_id_2 A _ndb_struct_na_base_pair_step.j_label_seq_id_2 4 _ndb_struct_na_base_pair_step.j_symmetry_2 1_555 _ndb_struct_na_base_pair_step.shift -0.014 _ndb_struct_na_base_pair_step.slide -2.479 _ndb_struct_na_base_pair_step.rise 3.371 _ndb_struct_na_base_pair_step.tilt -3.425 _ndb_struct_na_base_pair_step.roll -5.438 _ndb_struct_na_base_pair_step.twist 16.535 _ndb_struct_na_base_pair_step.x_displacement -4.324 _ndb_struct_na_base_pair_step.y_displacement -2.296 _ndb_struct_na_base_pair_step.helical_rise 3.903 _ndb_struct_na_base_pair_step.inclination -18.048 _ndb_struct_na_base_pair_step.tip 11.367 _ndb_struct_na_base_pair_step.helical_twist 17.732 _ndb_struct_na_base_pair_step.step_number 1 _ndb_struct_na_base_pair_step.step_name AA_A4U5:A4U5_BB _ndb_struct_na_base_pair_step.i_auth_asym_id_1 A _ndb_struct_na_base_pair_step.i_auth_seq_id_1 4 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 ? _ndb_struct_na_base_pair_step.j_auth_asym_id_1 B _ndb_struct_na_base_pair_step.j_auth_seq_id_1 5 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 ? _ndb_struct_na_base_pair_step.i_auth_asym_id_2 A _ndb_struct_na_base_pair_step.i_auth_seq_id_2 5 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 ? _ndb_struct_na_base_pair_step.j_auth_asym_id_2 B _ndb_struct_na_base_pair_step.j_auth_seq_id_2 4 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 ? # _pdbx_audit_support.funding_organization 'Other private' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _space_group.name_H-M_alt 'R 3 :H' _space_group.name_Hall 'R 3' _space_group.IT_number 146 _space_group.crystal_system trigonal _space_group.id 1 # _atom_sites.entry_id 9YRD _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.022326 _atom_sites.fract_transf_matrix[1][2] 0.012890 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025780 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014758 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source BR ? ? 25.79822 9.11301 ? ? 1.35700 25.34896 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? 0.51345 0.48472 ? ? 24.73122 6.32584 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 ? ? 1.42069 35.72801 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ #