HEADER HORMONE 20-OCT-25 9YT1 TITLE MODEL STRUCTURE OF LIRAGLUTIDE MONOMER IN BUFFER COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCAGON-LIKE PEPTIDE 1(7-37); COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GLP-1(7-37); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606 KEYWDS GLP-1 AGONIST, HORMONE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR P.A.NEPOMUCENO,J.M.ARAMINI,Y.SU,G.LIU REVDAT 1 04-NOV-26 9YT1 0 JRNL AUTH R.SCHRODER,N.HAMADA,P.A.NEPOMUCENO,M.LI,T.J.TUCKER, JRNL AUTH 2 A.C.TEMPLETON,W.P.WUELFING,G.LIU,Y.SU,J.LING JRNL TITL INVESTIGATING THE MOLECULAR MECHANISM OF LIRAGLUTIDE JRNL TITL 2 OLIGOMERIZATION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.98 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9YT1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-OCT-25. REMARK 100 THE DEPOSITION ID IS D_1000297636. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 25 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 10 MM SODIUM PHOSPHATE, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H TOCSY; 2D 1H-1H NOESY; REMARK 210 2D 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRFAM-SPARKY, TALOS-N REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 2 -75.51 -121.37 REMARK 500 1 GLU A 3 -42.66 -143.90 REMARK 500 1 THR A 5 42.54 -144.13 REMARK 500 1 PHE A 6 -169.71 -119.39 REMARK 500 1 SER A 8 -166.50 67.79 REMARK 500 2 ALA A 2 99.63 60.68 REMARK 500 2 THR A 7 45.56 -98.49 REMARK 500 2 SER A 8 -169.81 -121.95 REMARK 500 3 GLU A 3 -70.88 -90.86 REMARK 500 3 SER A 8 -169.40 -118.64 REMARK 500 4 THR A 7 45.66 -98.90 REMARK 500 4 SER A 8 -169.79 -122.62 REMARK 500 5 ALA A 2 59.55 -154.00 REMARK 500 5 GLU A 3 70.17 55.97 REMARK 500 5 THR A 7 67.87 -179.45 REMARK 500 5 SER A 8 -78.84 -169.19 REMARK 500 5 GLU A 15 -71.42 -67.47 REMARK 500 6 GLU A 3 -47.14 -135.95 REMARK 500 6 THR A 7 67.76 -176.87 REMARK 500 6 SER A 8 -78.86 -169.14 REMARK 500 7 THR A 7 46.56 -93.84 REMARK 500 7 SER A 8 -169.48 -123.53 REMARK 500 8 THR A 5 40.85 -143.73 REMARK 500 8 THR A 7 38.98 -94.23 REMARK 500 8 SER A 8 -169.78 -110.61 REMARK 500 9 GLU A 3 88.73 -170.41 REMARK 500 9 THR A 5 39.09 -143.35 REMARK 500 9 THR A 7 99.02 -56.71 REMARK 500 9 SER A 8 -169.28 179.87 REMARK 500 10 THR A 5 39.88 -143.43 REMARK 500 10 THR A 7 70.45 -170.13 REMARK 500 10 SER A 8 -78.75 -158.67 REMARK 500 11 ALA A 2 -178.29 61.37 REMARK 500 11 THR A 5 70.91 -110.31 REMARK 500 11 THR A 7 71.54 -168.70 REMARK 500 11 SER A 8 -78.79 -162.06 REMARK 500 12 ALA A 2 141.84 -175.20 REMARK 500 12 THR A 5 -76.02 -146.59 REMARK 500 12 PHE A 6 -175.81 54.91 REMARK 500 12 THR A 7 35.68 -145.36 REMARK 500 12 SER A 8 -165.68 -129.73 REMARK 500 13 ALA A 2 -75.06 -151.88 REMARK 500 13 GLU A 3 -169.50 62.36 REMARK 500 13 THR A 5 41.53 -93.36 REMARK 500 13 THR A 7 42.37 -176.68 REMARK 500 13 SER A 8 -78.22 -139.02 REMARK 500 14 GLU A 3 -35.95 -176.86 REMARK 500 15 ALA A 2 170.80 -59.25 REMARK 500 15 THR A 5 43.24 -144.49 REMARK 500 15 SER A 8 -165.40 68.09 REMARK 500 REMARK 500 THIS ENTRY HAS 71 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 31279 RELATED DB: BMRB REMARK 900 MODEL STRUCTURE OF LIRAGLUTIDE MONOMER IN BUFFER DBREF 9YT1 A 1 31 UNP P01275 GLUC_HUMAN 98 128 SEQADV 9YT1 ARG A 28 UNP P01275 LYS 125 CONFLICT SEQRES 1 A 31 HIS ALA GLU GLY THR PHE THR SER ASP VAL SER SER TYR SEQRES 2 A 31 LEU GLU GLY GLN ALA ALA LYS GLU PHE ILE ALA TRP LEU SEQRES 3 A 31 VAL ARG GLY ARG GLY HET PLM A 101 48 HET GGL A 102 15 HETNAM PLM PALMITIC ACID HETNAM GGL GAMMA-L-GLUTAMIC ACID HETSYN GGL L-GLUTAMIC ACID FORMUL 2 PLM C16 H32 O2 FORMUL 3 GGL C5 H9 N O4 HELIX 1 AA1 SER A 8 GLU A 15 1 8 HELIX 2 AA2 ALA A 18 GLY A 29 1 12 LINK NZ LYS A 20 CD GGL A 102 1555 1555 1.33 LINK C1 PLM A 101 N GGL A 102 1555 1555 1.33 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 ENDMDL MODEL 2 ENDMDL MODEL 3 ENDMDL MODEL 4 ENDMDL MODEL 5 ENDMDL MODEL 6 ENDMDL MODEL 7 ENDMDL MODEL 8 ENDMDL MODEL 9 ENDMDL MODEL 10 ENDMDL MODEL 11 ENDMDL MODEL 12 ENDMDL MODEL 13 ENDMDL MODEL 14 ENDMDL MODEL 15 ENDMDL MODEL 16 ENDMDL MODEL 17 ENDMDL MODEL 18 ENDMDL MODEL 19 ENDMDL MODEL 20 ENDMDL CONECT 266 518 CONECT 464 465 466 512 CONECT 465 464 CONECT 466 464 467 481 482 CONECT 467 466 468 483 484 CONECT 468 467 469 485 486 CONECT 469 468 470 487 488 CONECT 470 469 471 489 490 CONECT 471 470 472 491 492 CONECT 472 471 473 493 494 CONECT 473 472 474 495 496 CONECT 474 473 475 497 498 CONECT 475 474 476 499 500 CONECT 476 475 477 501 502 CONECT 477 476 478 503 504 CONECT 478 477 479 505 506 CONECT 479 478 480 507 508 CONECT 480 479 509 510 511 CONECT 481 466 CONECT 482 466 CONECT 483 467 CONECT 484 467 CONECT 485 468 CONECT 486 468 CONECT 487 469 CONECT 488 469 CONECT 489 470 CONECT 490 470 CONECT 491 471 CONECT 492 471 CONECT 493 472 CONECT 494 472 CONECT 495 473 CONECT 496 473 CONECT 497 474 CONECT 498 474 CONECT 499 475 CONECT 500 475 CONECT 501 476 CONECT 502 476 CONECT 503 477 CONECT 504 477 CONECT 505 478 CONECT 506 478 CONECT 507 479 CONECT 508 479 CONECT 509 480 CONECT 510 480 CONECT 511 480 CONECT 512 464 513 521 CONECT 513 512 514 516 522 CONECT 514 513 515 520 CONECT 515 514 CONECT 516 513 517 523 524 CONECT 517 516 518 525 526 CONECT 518 266 517 519 CONECT 519 518 CONECT 520 514 CONECT 521 512 CONECT 522 513 CONECT 523 516 CONECT 524 516 CONECT 525 517 CONECT 526 517 MASTER 140 0 2 2 0 0 0 6 265 1 64 3 END