HEADER DNA 29-OCT-25 9YYP TITLE MOTIF1-MOTIF2-3T LEFT-RIGHT HYBRID G-QUADRUPLEX DIMER IN THE P1211 TITLE 2 SPACE GROUP COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (27-MER); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: MOTIF1 AND MOTIF2 LEFT HANDED MINIMAL MOTIFS CONNECTED COMPND 6 BY A TT LINKER AT POSITIONS 13 AND 14. IN THE CRYSTALLINE STATE, TWO COMPND 7 MOLECULES DIMERIZE VIA A T-TETRAD FORMED BY THE CONTRIBUTION OF T25 COMPND 8 AND T27 FROM EACH MONOMER. SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS LEFT-RIGHT HYBRID G-QUADRUPLEX LEFT HANDED G-QUADRUPLEX THYMINE KEYWDS 2 TETRAD, THYMINE CAP, DNA EXPDTA X-RAY DIFFRACTION AUTHOR K.PULE,E.XING,L.YATSUNYK REVDAT 1 04-NOV-26 9YYP 0 JRNL AUTH K.PULE,E.XING,L.YATSUNYK JRNL TITL MOTIF1-MOTIF2-3T LEFT-RIGHT HYBRID G-QUADRUPLEX DIMER IN THE JRNL TITL 2 P1211 SPACE GROUP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.2_5419 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 16340 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.860 REMARK 3 FREE R VALUE TEST SET COUNT : 794 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.4800 - 2.9600 0.97 2636 123 0.1383 0.1615 REMARK 3 2 2.9600 - 2.3500 0.99 2635 135 0.2065 0.2869 REMARK 3 3 2.3500 - 2.0500 0.98 2578 124 0.1939 0.2392 REMARK 3 4 2.0500 - 1.8700 0.99 2612 140 0.2084 0.2817 REMARK 3 5 1.8700 - 1.7300 0.98 2597 134 0.2127 0.2919 REMARK 3 6 1.7300 - 1.6300 0.96 2488 138 0.2485 0.2597 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.199 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.519 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 1327 REMARK 3 ANGLE : 1.663 2030 REMARK 3 CHIRALITY : 0.074 214 REMARK 3 PLANARITY : 0.017 54 REMARK 3 DIHEDRAL : 37.623 565 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9YYP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-OCT-25. REMARK 100 THE DEPOSITION ID IS D_1000300463. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-APR-25 REMARK 200 TEMPERATURE (KELVIN) : 183 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : RAPD REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16380 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.630 REMARK 200 RESOLUTION RANGE LOW (A) : 61.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 1.16000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: CRYSTALS HAD A PARALLELOGRAM FORM REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.08 M MAGNESIUM ACETATE, 0.05 M REMARK 280 SODIUM CACODYLATE TRIHYDRATE, PH 6.0, 28% POLYETHYLENE GLYCOL REMARK 280 4000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.91000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -72.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 10.45597 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -35.47832 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG A 1 O3' DG A 1 C3' -0.053 REMARK 500 DG A 10 O3' DG A 10 C3' -0.043 REMARK 500 DT A 13 O3' DT A 13 C3' -0.045 REMARK 500 DT A 17 O3' DT A 17 C3' -0.038 REMARK 500 DT A 25 C5 DT A 25 C6 0.057 REMARK 500 DG A 26 O3' DG A 26 C3' -0.042 REMARK 500 DT A 27 C5 DT A 27 C7 -0.043 REMARK 500 DT B 5 O3' DT B 5 C3' -0.042 REMARK 500 DG B 7 O3' DG B 7 C3' -0.041 REMARK 500 DT B 17 O3' DT B 17 C3' -0.054 REMARK 500 DT B 20 O3' DT B 20 C3' -0.043 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT A 14 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DG A 26 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT A 27 O5' - P - OP1 ANGL. DEV. = -10.9 DEGREES REMARK 500 DT B 14 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 DG B 21 O5' - P - OP2 ANGL. DEV. = -6.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 104 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 1 O6 REMARK 620 2 DG A 4 O6 70.9 REMARK 620 3 DG A 7 O6 106.8 67.0 REMARK 620 4 DG A 10 O6 70.6 105.8 67.4 REMARK 620 5 DG A 15 O6 90.4 155.6 135.6 81.3 REMARK 620 6 DG A 18 O6 153.8 133.7 81.2 90.7 68.1 REMARK 620 7 DG A 21 O6 134.7 81.1 93.2 153.5 103.1 67.6 REMARK 620 8 DG A 24 O6 79.2 89.5 151.0 138.7 71.2 106.1 65.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 105 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 1 O6 REMARK 620 2 DG A 3 O6 92.2 REMARK 620 3 DG A 4 O6 66.0 79.0 REMARK 620 4 DG A 6 O6 152.3 70.3 89.1 REMARK 620 5 DG A 7 O6 98.8 132.0 63.9 79.3 REMARK 620 6 DG A 9 O6 132.9 112.6 154.4 74.7 93.2 REMARK 620 7 DG A 10 O6 66.7 156.3 100.7 133.3 65.3 77.8 REMARK 620 8 DG A 12 O6 78.8 72.2 133.1 113.9 155.8 72.4 92.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 103 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DT A 2 O2 REMARK 620 2 DT B 5 O2 37.7 REMARK 620 3 P5R B 109 O7 31.8 6.2 REMARK 620 4 P5R B 109 O5 37.4 1.7 6.5 REMARK 620 5 P5R B 109 O4 40.0 3.2 8.3 4.8 REMARK 620 6 P5R B 109 O6 33.5 4.8 4.3 3.9 8.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 105 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DT A 8 O2 REMARK 620 2 DT B 11 O2 45.0 REMARK 620 3 P5R B 109 O15 43.1 4.4 REMARK 620 4 P5R B 109 O14 46.3 1.3 4.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 104 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DT A 11 O2 REMARK 620 2 DT B 8 O2 37.7 REMARK 620 3 P5R B 109 O11 33.4 5.4 REMARK 620 4 P5R B 109 O9 38.6 1.9 7.1 REMARK 620 5 P5R B 109 O10 36.6 2.6 3.4 4.5 REMARK 620 6 P5R B 109 O12 31.9 6.1 4.9 6.6 6.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 12 OP1 REMARK 620 2 DT A 14 OP1 108.5 REMARK 620 3 DG A 15 OP1 90.0 102.8 REMARK 620 4 HOH A 205 O 90.9 159.0 84.8 REMARK 620 5 HOH A 214 O 174.0 65.6 90.5 95.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 103 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 15 O6 REMARK 620 2 DG A 16 O6 80.4 REMARK 620 3 DG A 18 O6 64.9 90.2 REMARK 620 4 DG A 19 O6 134.9 71.6 80.3 REMARK 620 5 DG A 21 O6 101.5 151.6 66.0 88.5 REMARK 620 6 DG A 22 O6 154.4 105.7 138.4 69.3 84.9 REMARK 620 7 DG A 24 O6 69.0 138.6 100.8 149.4 64.9 92.2 REMARK 620 8 DG A 26 O6 91.4 71.0 152.4 111.0 136.7 68.1 82.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 102 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 16 O6 REMARK 620 2 DG A 19 O6 60.5 REMARK 620 3 DG A 22 O6 97.4 68.4 REMARK 620 4 DT A 25 O4 148.9 136.7 74.9 REMARK 620 5 DG A 26 O6 59.3 94.7 66.0 90.7 REMARK 620 6 HOH A 203 O 108.9 162.6 128.6 59.6 90.4 REMARK 620 7 DT B 25 O2 138.6 84.3 88.1 72.0 152.1 98.8 REMARK 620 8 DT B 27 O4 72.2 78.1 145.5 130.0 126.9 85.6 80.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 209 O REMARK 620 2 HOH A 215 O 87.1 REMARK 620 3 HOH A 241 O 91.8 177.3 REMARK 620 4 HOH A 244 O 89.3 84.6 92.9 REMARK 620 5 HOH B 212 O 176.8 89.9 91.3 91.3 REMARK 620 6 HOH B 215 O 87.1 91.0 91.4 174.5 92.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 106 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG B 1 O6 REMARK 620 2 DG B 3 O6 90.3 REMARK 620 3 DG B 4 O6 66.2 77.8 REMARK 620 4 DG B 6 O6 154.5 72.9 91.0 REMARK 620 5 DG B 7 O6 103.1 133.6 68.1 77.1 REMARK 620 6 DG B 9 O6 134.2 110.8 155.5 70.9 91.2 REMARK 620 7 DG B 10 O6 68.0 154.4 103.7 132.0 67.3 78.5 REMARK 620 8 DG B 12 O6 77.9 70.4 131.4 112.6 155.5 72.3 91.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 107 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG B 1 O6 REMARK 620 2 DG B 4 O6 69.1 REMARK 620 3 DG B 7 O6 104.4 67.9 REMARK 620 4 DG B 10 O6 68.9 103.8 65.2 REMARK 620 5 DG B 15 O6 90.4 153.0 136.7 83.7 REMARK 620 6 DG B 18 O6 153.3 135.5 82.0 91.4 68.9 REMARK 620 7 DG B 21 O6 137.3 80.9 91.0 150.5 105.4 67.2 REMARK 620 8 DG B 24 O6 80.8 88.8 151.6 139.6 70.1 106.2 68.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 102 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG B 12 OP1 REMARK 620 2 DG B 15 OP1 93.6 REMARK 620 3 HOH B 223 O 90.7 93.0 REMARK 620 4 HOH B 226 O 168.7 93.7 80.3 REMARK 620 5 HOH B 236 O 89.2 161.9 69.0 81.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 108 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG B 15 O6 REMARK 620 2 DG B 16 O6 79.1 REMARK 620 3 DG B 18 O6 67.7 87.7 REMARK 620 4 DG B 19 O6 133.2 69.2 77.2 REMARK 620 5 DG B 21 O6 101.7 148.5 64.4 89.4 REMARK 620 6 DG B 22 O6 152.1 107.2 138.4 72.6 87.0 REMARK 620 7 DG B 24 O6 68.8 139.1 102.1 151.6 65.7 91.6 REMARK 620 8 DG B 26 O6 87.7 72.1 150.9 112.9 139.2 69.4 81.7 REMARK 620 N 1 2 3 4 5 6 7 DBREF 9YYP A 1 27 PDB 9YYP 9YYP 1 27 DBREF 9YYP B 1 27 PDB 9YYP 9YYP 1 27 SEQRES 1 A 27 DG DT DG DG DT DG DG DT DG DG DT DG DT SEQRES 2 A 27 DT DG DG DT DG DG DT DG DG DT DG DT DG SEQRES 3 A 27 DT SEQRES 1 B 27 DG DT DG DG DT DG DG DT DG DG DT DG DT SEQRES 2 B 27 DT DG DG DT DG DG DT DG DG DT DG DT DG SEQRES 3 B 27 DT HET MG A 101 1 HET K A 102 1 HET K A 103 1 HET K A 104 1 HET K A 105 1 HET MG B 101 1 HET MG B 102 1 HET NA B 103 1 HET NA B 104 1 HET NA B 105 1 HET K B 106 1 HET K B 107 1 HET K B 108 1 HET P5R B 109 52 HETNAM MG MAGNESIUM ION HETNAM K POTASSIUM ION HETNAM NA SODIUM ION HETNAM P5R 2-[2-[2-[2-[2-[2-[2-[2-[2-[2-[2-[2-[2-[2-[2-[2-(2- HETNAM 2 P5R HYDROXYETHYLOXY) HETNAM 3 P5R ETHOXY]ETHOXY]ETHOXY]ETHOXY]ETHOXY]ETHOXY]ETHOXY]ETHOX HETNAM 4 P5R Y]ETHOXY]ETHOXY]ETHOXY]ETHOXY]ETHOXY]ETHOXY]ETHOXY]ETH HETNAM 5 P5R ANOL FORMUL 3 MG 3(MG 2+) FORMUL 4 K 7(K 1+) FORMUL 10 NA 3(NA 1+) FORMUL 16 P5R C34 H70 O18 FORMUL 17 HOH *82(H2 O) LINK O6 DG A 1 K K A 104 1555 1555 2.74 LINK O6 DG A 1 K K A 105 1555 1555 2.96 LINK O2 DT A 2 NA NA B 103 1555 1556 2.55 LINK O6 DG A 3 K K A 105 1555 1555 2.74 LINK O6 DG A 4 K K A 104 1555 1555 2.78 LINK O6 DG A 4 K K A 105 1555 1555 2.92 LINK O6 DG A 6 K K A 105 1555 1555 2.72 LINK O6 DG A 7 K K A 104 1555 1555 2.81 LINK O6 DG A 7 K K A 105 1555 1555 2.91 LINK O2 DT A 8 NA NA B 105 1555 1556 2.56 LINK O6 DG A 9 K K A 105 1555 1555 2.80 LINK O6 DG A 10 K K A 104 1555 1555 2.86 LINK O6 DG A 10 K K A 105 1555 1555 2.92 LINK O2 DT A 11 NA NA B 104 1555 1556 2.62 LINK OP1 DG A 12 MG MG A 101 1555 1555 1.95 LINK O6 DG A 12 K K A 105 1555 1555 2.76 LINK OP1 DT A 14 MG MG A 101 1555 1555 2.91 LINK OP1 DG A 15 MG MG A 101 1555 1555 2.21 LINK O6 DG A 15 K K A 103 1555 1555 2.87 LINK O6 DG A 15 K K A 104 1555 1555 2.78 LINK O6 DG A 16 K K A 102 1555 1555 3.33 LINK O6 DG A 16 K K A 103 1555 1555 2.76 LINK O6 DG A 18 K K A 103 1555 1555 2.91 LINK O6 DG A 18 K K A 104 1555 1555 2.76 LINK O6 DG A 19 K K A 102 1555 1555 3.07 LINK O6 DG A 19 K K A 103 1555 1555 2.77 LINK O6 DG A 21 K K A 103 1555 1555 2.80 LINK O6 DG A 21 K K A 104 1555 1555 2.83 LINK O6 DG A 22 K K A 102 1555 1555 2.61 LINK O6 DG A 22 K K A 103 1555 1555 2.88 LINK O6 DG A 24 K K A 103 1555 1555 2.91 LINK O6 DG A 24 K K A 104 1555 1555 2.84 LINK O4 DT A 25 K K A 102 1555 1555 3.10 LINK O6 DG A 26 K K A 102 1555 1555 3.14 LINK O6 DG A 26 K K A 103 1555 1555 2.77 LINK MG MG A 101 O HOH A 205 1555 1455 2.59 LINK MG MG A 101 O HOH A 214 1555 1555 2.01 LINK K K A 102 O HOH A 203 1555 1555 2.86 LINK K K A 102 O2 DT B 25 1555 1555 2.63 LINK K K A 102 O4 DT B 27 1555 1555 2.61 LINK O HOH A 209 MG MG B 101 1555 1555 2.12 LINK O HOH A 215 MG MG B 101 1655 1555 2.18 LINK O HOH A 241 MG MG B 101 1555 1555 2.05 LINK O HOH A 244 MG MG B 101 1655 1555 2.22 LINK O6 DG B 1 K K B 106 1555 1555 2.89 LINK O6 DG B 1 K K B 107 1555 1555 2.75 LINK O6 DG B 3 K K B 106 1555 1555 2.90 LINK O6 DG B 4 K K B 106 1555 1555 2.94 LINK O6 DG B 4 K K B 107 1555 1555 2.86 LINK O2 DT B 5 NA NA B 103 1555 1555 2.53 LINK O6 DG B 6 K K B 106 1555 1555 2.78 LINK O6 DG B 7 K K B 106 1555 1555 2.83 LINK O6 DG B 7 K K B 107 1555 1555 2.92 LINK O2 DT B 8 NA NA B 104 1555 1555 2.42 LINK O6 DG B 9 K K B 106 1555 1555 2.83 LINK O6 DG B 10 K K B 106 1555 1555 2.77 LINK O6 DG B 10 K K B 107 1555 1555 2.84 LINK O2 DT B 11 NA NA B 105 1555 1555 2.37 LINK OP1 DG B 12 MG MG B 102 1555 1555 2.07 LINK O6 DG B 12 K K B 106 1555 1555 2.78 LINK OP1 DG B 15 MG MG B 102 1555 1555 1.92 LINK O6 DG B 15 K K B 107 1555 1555 2.81 LINK O6 DG B 15 K K B 108 1555 1555 2.83 LINK O6 DG B 16 K K B 108 1555 1555 2.81 LINK O6 DG B 18 K K B 107 1555 1555 2.79 LINK O6 DG B 18 K K B 108 1555 1555 2.86 LINK O6 DG B 19 K K B 108 1555 1555 2.68 LINK O6 DG B 21 K K B 107 1555 1555 2.75 LINK O6 DG B 21 K K B 108 1555 1555 2.89 LINK O6 DG B 22 K K B 108 1555 1555 2.73 LINK O6 DG B 24 K K B 107 1555 1555 2.81 LINK O6 DG B 24 K K B 108 1555 1555 2.90 LINK O6 DG B 26 K K B 108 1555 1555 2.79 LINK MG MG B 101 O HOH B 212 1555 1555 1.92 LINK MG MG B 101 O HOH B 215 1555 1555 2.05 LINK MG MG B 102 O HOH B 223 1555 1555 2.59 LINK MG MG B 102 O HOH B 226 1555 1555 2.11 LINK MG MG B 102 O HOH B 236 1555 1555 2.53 LINK NA NA B 103 O7 P5R B 109 1555 1555 2.59 LINK NA NA B 103 O5 P5R B 109 1555 1555 2.92 LINK NA NA B 103 O4 P5R B 109 1555 1555 2.90 LINK NA NA B 103 O6 P5R B 109 1555 1555 2.90 LINK NA NA B 104 O11 P5R B 109 1555 1555 2.85 LINK NA NA B 104 O9 P5R B 109 1555 1555 2.95 LINK NA NA B 104 O10 P5R B 109 1555 1555 2.58 LINK NA NA B 104 O12 P5R B 109 1555 1555 2.84 LINK NA NA B 105 O15 P5R B 109 1555 1555 3.09 LINK NA NA B 105 O14 P5R B 109 1555 1555 2.40 CRYST1 30.920 61.820 36.987 90.00 106.42 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.032342 0.000000 0.009532 0.00000 SCALE2 0.000000 0.016176 0.000000 0.00000 SCALE3 0.000000 0.000000 0.028186 0.00000 CONECT 14 1144 1145 CONECT 56 1145 CONECT 78 1144 1145 CONECT 120 1145 CONECT 142 1144 1145 CONECT 184 1145 CONECT 206 1144 1145 CONECT 233 1141 CONECT 248 1145 CONECT 275 1141 CONECT 295 1141 CONECT 310 1143 1144 CONECT 332 1142 1143 CONECT 374 1143 1144 CONECT 396 1142 1143 CONECT 438 1143 1144 CONECT 460 1142 1143 CONECT 502 1143 1144 CONECT 524 1142 CONECT 544 1142 1143 CONECT 584 1151 1152 CONECT 626 1151 CONECT 648 1151 1152 CONECT 667 1148 CONECT 690 1151 CONECT 712 1151 1152 CONECT 731 1149 CONECT 754 1151 CONECT 776 1151 1152 CONECT 795 1150 CONECT 803 1147 CONECT 818 1151 CONECT 865 1147 CONECT 880 1152 1153 CONECT 902 1153 CONECT 944 1152 1153 CONECT 966 1153 CONECT 1008 1152 1153 CONECT 1030 1153 CONECT 1072 1152 1153 CONECT 1091 1142 CONECT 1114 1153 CONECT 1136 1142 CONECT 1141 233 275 295 1219 CONECT 1142 332 396 460 524 CONECT 1142 544 1091 1136 1208 CONECT 1143 310 332 374 396 CONECT 1143 438 460 502 544 CONECT 1144 14 78 142 206 CONECT 1144 310 374 438 502 CONECT 1145 14 56 78 120 CONECT 1145 142 184 206 248 CONECT 1146 1214 1246 1261 1264 CONECT 1147 803 865 1272 1275 CONECT 1147 1285 CONECT 1148 667 1163 1166 1169 CONECT 1148 1172 CONECT 1149 731 1178 1181 1184 CONECT 1149 1187 CONECT 1150 795 1193 1196 CONECT 1151 584 626 648 690 CONECT 1151 712 754 776 818 CONECT 1152 584 648 712 776 CONECT 1152 880 944 1008 1072 CONECT 1153 880 902 944 966 CONECT 1153 1008 1030 1072 1114 CONECT 1154 1155 CONECT 1155 1154 1156 CONECT 1156 1155 1157 CONECT 1157 1156 1158 CONECT 1158 1157 1159 CONECT 1159 1158 1160 CONECT 1160 1159 1161 CONECT 1161 1160 1162 CONECT 1162 1161 1163 CONECT 1163 1148 1162 1164 CONECT 1164 1163 1165 CONECT 1165 1164 1166 CONECT 1166 1148 1165 1167 CONECT 1167 1166 1168 CONECT 1168 1167 1169 CONECT 1169 1148 1168 1170 CONECT 1170 1169 1171 CONECT 1171 1170 1172 CONECT 1172 1148 1171 1173 CONECT 1173 1172 1174 CONECT 1174 1173 1175 CONECT 1175 1174 1176 CONECT 1176 1175 1177 CONECT 1177 1176 1178 CONECT 1178 1149 1177 1179 CONECT 1179 1178 1180 CONECT 1180 1179 1181 CONECT 1181 1149 1180 1182 CONECT 1182 1181 1183 CONECT 1183 1182 1184 CONECT 1184 1149 1183 1185 CONECT 1185 1184 1186 CONECT 1186 1185 1187 CONECT 1187 1149 1186 1188 CONECT 1188 1187 1189 CONECT 1189 1188 1190 CONECT 1190 1189 1191 CONECT 1191 1190 1192 CONECT 1192 1191 1193 CONECT 1193 1150 1192 1194 CONECT 1194 1193 1195 CONECT 1195 1194 1196 CONECT 1196 1150 1195 1197 CONECT 1197 1196 1198 CONECT 1198 1197 1199 CONECT 1199 1198 1200 CONECT 1200 1199 1201 CONECT 1201 1200 1202 CONECT 1202 1201 1203 CONECT 1203 1202 1204 CONECT 1204 1203 1205 CONECT 1205 1204 CONECT 1208 1142 CONECT 1214 1146 CONECT 1219 1141 CONECT 1246 1146 CONECT 1261 1146 CONECT 1264 1146 CONECT 1272 1147 CONECT 1275 1147 CONECT 1285 1147 MASTER 403 0 14 0 0 0 0 6 1285 2 127 6 END