data_9YZ1 # _entry.id 9YZ1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.417 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9YZ1 pdb_00009yz1 10.2210/pdb9yz1/pdb WWPDB D_1000277350 ? ? EMDB EMD-73664 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2026-10-07 ? 2 'EM metadata' 1 0 2026-10-07 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9YZ1 _pdbx_database_status.recvd_initial_deposition_date 2025-10-29 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Structure of a canine circovirus virus-like particle' _pdbx_database_related.db_id EMD-73664 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email fasseli.coulibaly@monash.edu _pdbx_contact_author.name_first Fasseli _pdbx_contact_author.name_last Coulibaly _pdbx_contact_author.name_mi J _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-3380-2117 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Hardy, J.M.' 1 0000-0002-8014-8552 'Das, S.' 2 0000-0003-0795-2752 'Costin, A.' 3 0000-0001-5334-557X 'Raidal, S.' 4 0000-0001-7917-8976 'Forwood, J.K.' 5 0000-0003-3267-9997 'Coulibaly, F.J.' 6 0000-0003-3380-2117 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Structural characterization of bat and canine circoviruses reveal unique motifs and minimal region required for assembly' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Coulibaly, F.J.' 1 ? primary 'Forwood, J.K.' 2 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Capsid protein' _entity.formula_weight 31229.465 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SRRHARASRRNYRTRPLNRYRRRRQNRFKLFHLRLRRTLTADWPTAPVKPTNDPQTETPLLWNFDHLSFKLTDFLQASHG TGDFQHLPPFRFYKFKKVYIRARWINWPKTLMENVLGRTALDLDGEDQGRGNATRSHLDPGTVPGRLEPPKDPNKAPFIY DPLQDRSSSRSFNMATGFKRGLTPKPMFTQDITSPSATAPWLTRGTPWVSVIQGANMVWNGLSISLRQMKDMRPTTPDTS TSQIPQVQYDISAYIAFKEFDYETGRQL ; _entity_poly.pdbx_seq_one_letter_code_can ;SRRHARASRRNYRTRPLNRYRRRRQNRFKLFHLRLRRTLTADWPTAPVKPTNDPQTETPLLWNFDHLSFKLTDFLQASHG TGDFQHLPPFRFYKFKKVYIRARWINWPKTLMENVLGRTALDLDGEDQGRGNATRSHLDPGTVPGRLEPPKDPNKAPFIY DPLQDRSSSRSFNMATGFKRGLTPKPMFTQDITSPSATAPWLTRGTPWVSVIQGANMVWNGLSISLRQMKDMRPTTPDTS TSQIPQVQYDISAYIAFKEFDYETGRQL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ARG n 1 3 ARG n 1 4 HIS n 1 5 ALA n 1 6 ARG n 1 7 ALA n 1 8 SER n 1 9 ARG n 1 10 ARG n 1 11 ASN n 1 12 TYR n 1 13 ARG n 1 14 THR n 1 15 ARG n 1 16 PRO n 1 17 LEU n 1 18 ASN n 1 19 ARG n 1 20 TYR n 1 21 ARG n 1 22 ARG n 1 23 ARG n 1 24 ARG n 1 25 GLN n 1 26 ASN n 1 27 ARG n 1 28 PHE n 1 29 LYS n 1 30 LEU n 1 31 PHE n 1 32 HIS n 1 33 LEU n 1 34 ARG n 1 35 LEU n 1 36 ARG n 1 37 ARG n 1 38 THR n 1 39 LEU n 1 40 THR n 1 41 ALA n 1 42 ASP n 1 43 TRP n 1 44 PRO n 1 45 THR n 1 46 ALA n 1 47 PRO n 1 48 VAL n 1 49 LYS n 1 50 PRO n 1 51 THR n 1 52 ASN n 1 53 ASP n 1 54 PRO n 1 55 GLN n 1 56 THR n 1 57 GLU n 1 58 THR n 1 59 PRO n 1 60 LEU n 1 61 LEU n 1 62 TRP n 1 63 ASN n 1 64 PHE n 1 65 ASP n 1 66 HIS n 1 67 LEU n 1 68 SER n 1 69 PHE n 1 70 LYS n 1 71 LEU n 1 72 THR n 1 73 ASP n 1 74 PHE n 1 75 LEU n 1 76 GLN n 1 77 ALA n 1 78 SER n 1 79 HIS n 1 80 GLY n 1 81 THR n 1 82 GLY n 1 83 ASP n 1 84 PHE n 1 85 GLN n 1 86 HIS n 1 87 LEU n 1 88 PRO n 1 89 PRO n 1 90 PHE n 1 91 ARG n 1 92 PHE n 1 93 TYR n 1 94 LYS n 1 95 PHE n 1 96 LYS n 1 97 LYS n 1 98 VAL n 1 99 TYR n 1 100 ILE n 1 101 ARG n 1 102 ALA n 1 103 ARG n 1 104 TRP n 1 105 ILE n 1 106 ASN n 1 107 TRP n 1 108 PRO n 1 109 LYS n 1 110 THR n 1 111 LEU n 1 112 MET n 1 113 GLU n 1 114 ASN n 1 115 VAL n 1 116 LEU n 1 117 GLY n 1 118 ARG n 1 119 THR n 1 120 ALA n 1 121 LEU n 1 122 ASP n 1 123 LEU n 1 124 ASP n 1 125 GLY n 1 126 GLU n 1 127 ASP n 1 128 GLN n 1 129 GLY n 1 130 ARG n 1 131 GLY n 1 132 ASN n 1 133 ALA n 1 134 THR n 1 135 ARG n 1 136 SER n 1 137 HIS n 1 138 LEU n 1 139 ASP n 1 140 PRO n 1 141 GLY n 1 142 THR n 1 143 VAL n 1 144 PRO n 1 145 GLY n 1 146 ARG n 1 147 LEU n 1 148 GLU n 1 149 PRO n 1 150 PRO n 1 151 LYS n 1 152 ASP n 1 153 PRO n 1 154 ASN n 1 155 LYS n 1 156 ALA n 1 157 PRO n 1 158 PHE n 1 159 ILE n 1 160 TYR n 1 161 ASP n 1 162 PRO n 1 163 LEU n 1 164 GLN n 1 165 ASP n 1 166 ARG n 1 167 SER n 1 168 SER n 1 169 SER n 1 170 ARG n 1 171 SER n 1 172 PHE n 1 173 ASN n 1 174 MET n 1 175 ALA n 1 176 THR n 1 177 GLY n 1 178 PHE n 1 179 LYS n 1 180 ARG n 1 181 GLY n 1 182 LEU n 1 183 THR n 1 184 PRO n 1 185 LYS n 1 186 PRO n 1 187 MET n 1 188 PHE n 1 189 THR n 1 190 GLN n 1 191 ASP n 1 192 ILE n 1 193 THR n 1 194 SER n 1 195 PRO n 1 196 SER n 1 197 ALA n 1 198 THR n 1 199 ALA n 1 200 PRO n 1 201 TRP n 1 202 LEU n 1 203 THR n 1 204 ARG n 1 205 GLY n 1 206 THR n 1 207 PRO n 1 208 TRP n 1 209 VAL n 1 210 SER n 1 211 VAL n 1 212 ILE n 1 213 GLN n 1 214 GLY n 1 215 ALA n 1 216 ASN n 1 217 MET n 1 218 VAL n 1 219 TRP n 1 220 ASN n 1 221 GLY n 1 222 LEU n 1 223 SER n 1 224 ILE n 1 225 SER n 1 226 LEU n 1 227 ARG n 1 228 GLN n 1 229 MET n 1 230 LYS n 1 231 ASP n 1 232 MET n 1 233 ARG n 1 234 PRO n 1 235 THR n 1 236 THR n 1 237 PRO n 1 238 ASP n 1 239 THR n 1 240 SER n 1 241 THR n 1 242 SER n 1 243 GLN n 1 244 ILE n 1 245 PRO n 1 246 GLN n 1 247 VAL n 1 248 GLN n 1 249 TYR n 1 250 ASP n 1 251 ILE n 1 252 SER n 1 253 ALA n 1 254 TYR n 1 255 ILE n 1 256 ALA n 1 257 PHE n 1 258 LYS n 1 259 GLU n 1 260 PHE n 1 261 ASP n 1 262 TYR n 1 263 GLU n 1 264 THR n 1 265 GLY n 1 266 ARG n 1 267 GLN n 1 268 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 268 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'Isolate 214' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Canine circovirus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1194757 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 3 ? ? ? A . n A 1 2 ARG 2 4 ? ? ? A . n A 1 3 ARG 3 5 ? ? ? A . n A 1 4 HIS 4 6 ? ? ? A . n A 1 5 ALA 5 7 ? ? ? A . n A 1 6 ARG 6 8 ? ? ? A . n A 1 7 ALA 7 9 ? ? ? A . n A 1 8 SER 8 10 ? ? ? A . n A 1 9 ARG 9 11 ? ? ? A . n A 1 10 ARG 10 12 ? ? ? A . n A 1 11 ASN 11 13 ? ? ? A . n A 1 12 TYR 12 14 ? ? ? A . n A 1 13 ARG 13 15 ? ? ? A . n A 1 14 THR 14 16 ? ? ? A . n A 1 15 ARG 15 17 ? ? ? A . n A 1 16 PRO 16 18 ? ? ? A . n A 1 17 LEU 17 19 ? ? ? A . n A 1 18 ASN 18 20 ? ? ? A . n A 1 19 ARG 19 21 ? ? ? A . n A 1 20 TYR 20 22 ? ? ? A . n A 1 21 ARG 21 23 ? ? ? A . n A 1 22 ARG 22 24 ? ? ? A . n A 1 23 ARG 23 25 ? ? ? A . n A 1 24 ARG 24 26 ? ? ? A . n A 1 25 GLN 25 27 ? ? ? A . n A 1 26 ASN 26 28 ? ? ? A . n A 1 27 ARG 27 29 ? ? ? A . n A 1 28 PHE 28 30 ? ? ? A . n A 1 29 LYS 29 31 31 LYS LYS A . n A 1 30 LEU 30 32 32 LEU LEU A . n A 1 31 PHE 31 33 33 PHE PHE A . n A 1 32 HIS 32 34 34 HIS HIS A . n A 1 33 LEU 33 35 35 LEU LEU A . n A 1 34 ARG 34 36 36 ARG ARG A . n A 1 35 LEU 35 37 37 LEU LEU A . n A 1 36 ARG 36 38 38 ARG ARG A . n A 1 37 ARG 37 39 39 ARG ARG A . n A 1 38 THR 38 40 40 THR THR A . n A 1 39 LEU 39 41 41 LEU LEU A . n A 1 40 THR 40 42 42 THR THR A . n A 1 41 ALA 41 43 43 ALA ALA A . n A 1 42 ASP 42 44 44 ASP ASP A . n A 1 43 TRP 43 45 45 TRP TRP A . n A 1 44 PRO 44 46 46 PRO PRO A . n A 1 45 THR 45 47 47 THR THR A . n A 1 46 ALA 46 48 48 ALA ALA A . n A 1 47 PRO 47 49 49 PRO PRO A . n A 1 48 VAL 48 50 50 VAL VAL A . n A 1 49 LYS 49 51 51 LYS LYS A . n A 1 50 PRO 50 52 52 PRO PRO A . n A 1 51 THR 51 53 53 THR THR A . n A 1 52 ASN 52 54 54 ASN ASN A . n A 1 53 ASP 53 55 55 ASP ASP A . n A 1 54 PRO 54 56 56 PRO PRO A . n A 1 55 GLN 55 57 57 GLN GLN A . n A 1 56 THR 56 58 58 THR THR A . n A 1 57 GLU 57 59 59 GLU GLU A . n A 1 58 THR 58 60 60 THR THR A . n A 1 59 PRO 59 61 61 PRO PRO A . n A 1 60 LEU 60 62 62 LEU LEU A . n A 1 61 LEU 61 63 63 LEU LEU A . n A 1 62 TRP 62 64 64 TRP TRP A . n A 1 63 ASN 63 65 65 ASN ASN A . n A 1 64 PHE 64 66 66 PHE PHE A . n A 1 65 ASP 65 67 67 ASP ASP A . n A 1 66 HIS 66 68 68 HIS HIS A . n A 1 67 LEU 67 69 69 LEU LEU A . n A 1 68 SER 68 70 70 SER SER A . n A 1 69 PHE 69 71 71 PHE PHE A . n A 1 70 LYS 70 72 72 LYS LYS A . n A 1 71 LEU 71 73 73 LEU LEU A . n A 1 72 THR 72 74 74 THR THR A . n A 1 73 ASP 73 75 75 ASP ASP A . n A 1 74 PHE 74 76 76 PHE PHE A . n A 1 75 LEU 75 77 77 LEU LEU A . n A 1 76 GLN 76 78 78 GLN GLN A . n A 1 77 ALA 77 79 79 ALA ALA A . n A 1 78 SER 78 80 80 SER SER A . n A 1 79 HIS 79 81 ? ? ? A . n A 1 80 GLY 80 82 ? ? ? A . n A 1 81 THR 81 83 ? ? ? A . n A 1 82 GLY 82 84 ? ? ? A . n A 1 83 ASP 83 85 ? ? ? A . n A 1 84 PHE 84 86 ? ? ? A . n A 1 85 GLN 85 87 ? ? ? A . n A 1 86 HIS 86 88 88 HIS HIS A . n A 1 87 LEU 87 89 89 LEU LEU A . n A 1 88 PRO 88 90 90 PRO PRO A . n A 1 89 PRO 89 91 91 PRO PRO A . n A 1 90 PHE 90 92 92 PHE PHE A . n A 1 91 ARG 91 93 93 ARG ARG A . n A 1 92 PHE 92 94 94 PHE PHE A . n A 1 93 TYR 93 95 95 TYR TYR A . n A 1 94 LYS 94 96 96 LYS LYS A . n A 1 95 PHE 95 97 97 PHE PHE A . n A 1 96 LYS 96 98 98 LYS LYS A . n A 1 97 LYS 97 99 99 LYS LYS A . n A 1 98 VAL 98 100 100 VAL VAL A . n A 1 99 TYR 99 101 101 TYR TYR A . n A 1 100 ILE 100 102 102 ILE ILE A . n A 1 101 ARG 101 103 103 ARG ARG A . n A 1 102 ALA 102 104 104 ALA ALA A . n A 1 103 ARG 103 105 105 ARG ARG A . n A 1 104 TRP 104 106 106 TRP TRP A . n A 1 105 ILE 105 107 107 ILE ILE A . n A 1 106 ASN 106 108 108 ASN ASN A . n A 1 107 TRP 107 109 109 TRP TRP A . n A 1 108 PRO 108 110 110 PRO PRO A . n A 1 109 LYS 109 111 111 LYS LYS A . n A 1 110 THR 110 112 112 THR THR A . n A 1 111 LEU 111 113 113 LEU LEU A . n A 1 112 MET 112 114 114 MET MET A . n A 1 113 GLU 113 115 115 GLU GLU A . n A 1 114 ASN 114 116 116 ASN ASN A . n A 1 115 VAL 115 117 117 VAL VAL A . n A 1 116 LEU 116 118 118 LEU LEU A . n A 1 117 GLY 117 119 119 GLY GLY A . n A 1 118 ARG 118 120 120 ARG ARG A . n A 1 119 THR 119 121 121 THR THR A . n A 1 120 ALA 120 122 122 ALA ALA A . n A 1 121 LEU 121 123 123 LEU LEU A . n A 1 122 ASP 122 124 124 ASP ASP A . n A 1 123 LEU 123 125 125 LEU LEU A . n A 1 124 ASP 124 126 126 ASP ASP A . n A 1 125 GLY 125 127 127 GLY GLY A . n A 1 126 GLU 126 128 128 GLU GLU A . n A 1 127 ASP 127 129 129 ASP ASP A . n A 1 128 GLN 128 130 130 GLN GLN A . n A 1 129 GLY 129 131 131 GLY GLY A . n A 1 130 ARG 130 132 132 ARG ARG A . n A 1 131 GLY 131 133 133 GLY GLY A . n A 1 132 ASN 132 134 134 ASN ASN A . n A 1 133 ALA 133 135 135 ALA ALA A . n A 1 134 THR 134 136 136 THR THR A . n A 1 135 ARG 135 137 137 ARG ARG A . n A 1 136 SER 136 138 138 SER SER A . n A 1 137 HIS 137 139 139 HIS HIS A . n A 1 138 LEU 138 140 140 LEU LEU A . n A 1 139 ASP 139 141 141 ASP ASP A . n A 1 140 PRO 140 142 142 PRO PRO A . n A 1 141 GLY 141 143 143 GLY GLY A . n A 1 142 THR 142 144 144 THR THR A . n A 1 143 VAL 143 145 145 VAL VAL A . n A 1 144 PRO 144 146 146 PRO PRO A . n A 1 145 GLY 145 147 ? ? ? A . n A 1 146 ARG 146 148 ? ? ? A . n A 1 147 LEU 147 149 ? ? ? A . n A 1 148 GLU 148 150 ? ? ? A . n A 1 149 PRO 149 151 ? ? ? A . n A 1 150 PRO 150 152 152 PRO PRO A . n A 1 151 LYS 151 153 153 LYS LYS A . n A 1 152 ASP 152 154 154 ASP ASP A . n A 1 153 PRO 153 155 155 PRO PRO A . n A 1 154 ASN 154 156 156 ASN ASN A . n A 1 155 LYS 155 157 157 LYS LYS A . n A 1 156 ALA 156 158 158 ALA ALA A . n A 1 157 PRO 157 159 159 PRO PRO A . n A 1 158 PHE 158 160 160 PHE PHE A . n A 1 159 ILE 159 161 161 ILE ILE A . n A 1 160 TYR 160 162 162 TYR TYR A . n A 1 161 ASP 161 163 163 ASP ASP A . n A 1 162 PRO 162 164 164 PRO PRO A . n A 1 163 LEU 163 165 165 LEU LEU A . n A 1 164 GLN 164 166 166 GLN GLN A . n A 1 165 ASP 165 167 167 ASP ASP A . n A 1 166 ARG 166 168 168 ARG ARG A . n A 1 167 SER 167 169 169 SER SER A . n A 1 168 SER 168 170 170 SER SER A . n A 1 169 SER 169 171 171 SER SER A . n A 1 170 ARG 170 172 172 ARG ARG A . n A 1 171 SER 171 173 173 SER SER A . n A 1 172 PHE 172 174 174 PHE PHE A . n A 1 173 ASN 173 175 175 ASN ASN A . n A 1 174 MET 174 176 176 MET MET A . n A 1 175 ALA 175 177 177 ALA ALA A . n A 1 176 THR 176 178 178 THR THR A . n A 1 177 GLY 177 179 179 GLY GLY A . n A 1 178 PHE 178 180 180 PHE PHE A . n A 1 179 LYS 179 181 181 LYS LYS A . n A 1 180 ARG 180 182 182 ARG ARG A . n A 1 181 GLY 181 183 183 GLY GLY A . n A 1 182 LEU 182 184 184 LEU LEU A . n A 1 183 THR 183 185 185 THR THR A . n A 1 184 PRO 184 186 186 PRO PRO A . n A 1 185 LYS 185 187 187 LYS LYS A . n A 1 186 PRO 186 188 188 PRO PRO A . n A 1 187 MET 187 189 189 MET MET A . n A 1 188 PHE 188 190 190 PHE PHE A . n A 1 189 THR 189 191 191 THR THR A . n A 1 190 GLN 190 192 192 GLN GLN A . n A 1 191 ASP 191 193 193 ASP ASP A . n A 1 192 ILE 192 194 194 ILE ILE A . n A 1 193 THR 193 195 195 THR THR A . n A 1 194 SER 194 196 196 SER SER A . n A 1 195 PRO 195 197 197 PRO PRO A . n A 1 196 SER 196 198 198 SER SER A . n A 1 197 ALA 197 199 199 ALA ALA A . n A 1 198 THR 198 200 200 THR THR A . n A 1 199 ALA 199 201 201 ALA ALA A . n A 1 200 PRO 200 202 202 PRO PRO A . n A 1 201 TRP 201 203 203 TRP TRP A . n A 1 202 LEU 202 204 204 LEU LEU A . n A 1 203 THR 203 205 205 THR THR A . n A 1 204 ARG 204 206 206 ARG ARG A . n A 1 205 GLY 205 207 207 GLY GLY A . n A 1 206 THR 206 208 208 THR THR A . n A 1 207 PRO 207 209 209 PRO PRO A . n A 1 208 TRP 208 210 210 TRP TRP A . n A 1 209 VAL 209 211 211 VAL VAL A . n A 1 210 SER 210 212 212 SER SER A . n A 1 211 VAL 211 213 213 VAL VAL A . n A 1 212 ILE 212 214 214 ILE ILE A . n A 1 213 GLN 213 215 215 GLN GLN A . n A 1 214 GLY 214 216 216 GLY GLY A . n A 1 215 ALA 215 217 217 ALA ALA A . n A 1 216 ASN 216 218 218 ASN ASN A . n A 1 217 MET 217 219 219 MET MET A . n A 1 218 VAL 218 220 220 VAL VAL A . n A 1 219 TRP 219 221 221 TRP TRP A . n A 1 220 ASN 220 222 222 ASN ASN A . n A 1 221 GLY 221 223 223 GLY GLY A . n A 1 222 LEU 222 224 224 LEU LEU A . n A 1 223 SER 223 225 225 SER SER A . n A 1 224 ILE 224 226 226 ILE ILE A . n A 1 225 SER 225 227 227 SER SER A . n A 1 226 LEU 226 228 228 LEU LEU A . n A 1 227 ARG 227 229 229 ARG ARG A . n A 1 228 GLN 228 230 230 GLN GLN A . n A 1 229 MET 229 231 231 MET MET A . n A 1 230 LYS 230 232 232 LYS LYS A . n A 1 231 ASP 231 233 233 ASP ASP A . n A 1 232 MET 232 234 234 MET MET A . n A 1 233 ARG 233 235 235 ARG ARG A . n A 1 234 PRO 234 236 236 PRO PRO A . n A 1 235 THR 235 237 237 THR THR A . n A 1 236 THR 236 238 238 THR THR A . n A 1 237 PRO 237 239 239 PRO PRO A . n A 1 238 ASP 238 240 240 ASP ASP A . n A 1 239 THR 239 241 241 THR THR A . n A 1 240 SER 240 242 242 SER SER A . n A 1 241 THR 241 243 243 THR THR A . n A 1 242 SER 242 244 244 SER SER A . n A 1 243 GLN 243 245 245 GLN GLN A . n A 1 244 ILE 244 246 246 ILE ILE A . n A 1 245 PRO 245 247 247 PRO PRO A . n A 1 246 GLN 246 248 248 GLN GLN A . n A 1 247 VAL 247 249 249 VAL VAL A . n A 1 248 GLN 248 250 250 GLN GLN A . n A 1 249 TYR 249 251 251 TYR TYR A . n A 1 250 ASP 250 252 252 ASP ASP A . n A 1 251 ILE 251 253 253 ILE ILE A . n A 1 252 SER 252 254 254 SER SER A . n A 1 253 ALA 253 255 255 ALA ALA A . n A 1 254 TYR 254 256 256 TYR TYR A . n A 1 255 ILE 255 257 257 ILE ILE A . n A 1 256 ALA 256 258 258 ALA ALA A . n A 1 257 PHE 257 259 259 PHE PHE A . n A 1 258 LYS 258 260 260 LYS LYS A . n A 1 259 GLU 259 261 261 GLU GLU A . n A 1 260 PHE 260 262 262 PHE PHE A . n A 1 261 ASP 261 263 263 ASP ASP A . n A 1 262 TYR 262 264 264 TYR TYR A . n A 1 263 GLU 263 265 265 GLU GLU A . n A 1 264 THR 264 266 266 THR THR A . n A 1 265 GLY 265 267 267 GLY GLY A . n A 1 266 ARG 266 268 268 ARG ARG A . n A 1 267 GLN 267 269 269 GLN GLN A . n A 1 268 LEU 268 270 ? ? ? A . n # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 153 ? CG ? A LYS 151 CG 2 1 Y 1 A LYS 153 ? CD ? A LYS 151 CD 3 1 Y 1 A LYS 153 ? CE ? A LYS 151 CE 4 1 Y 1 A LYS 153 ? NZ ? A LYS 151 NZ # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9YZ1 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9YZ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9YZ1 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 9YZ1 _struct.title 'Structure of a canine circovirus virus-like particle' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9YZ1 _struct_keywords.text 'Capsid, virus, jelly-roll, VIRUS LIKE PARTICLE' _struct_keywords.pdbx_keywords 'VIRUS LIKE PARTICLE' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code I3VPR5_9CIRC _struct_ref.pdbx_db_accession I3VPR5 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;RRHARASRRNYRTRPLNRYRRRRQNRFKLFHLRLRRTLTADWPTAPVKPTNDPQTETPLLWNFDHLSFKLTDFLQASHGT GDFQHLPPFRFYKFKKVYIRARWINWPKTLMENVLGRTALDLDGEDQGRGNATRSHLDPGTVPGRLEPPKDPNKAPFIYD PLQDRSSSRSFNMATGFKRGLTPKPMFTQDITSPSATAPWLTRGTPWVSVIQGANMVWNGLSISLRQMKDMRPTTPDTST SQIPQVQYDISAYIAFKEFDYETGRQL ; _struct_ref.pdbx_align_begin 4 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 9YZ1 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 268 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession I3VPR5 _struct_ref_seq.db_align_beg 4 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 270 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 4 _struct_ref_seq.pdbx_auth_seq_align_end 270 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 9YZ1 _struct_ref_seq_dif.mon_id SER _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code I3VPR5 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 3 _struct_ref_seq_dif.pdbx_ordinal 1 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 60-meric _pdbx_struct_assembly.oligomeric_count 60 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression ;1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60 ; _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0 0.0 0.0 0.0 0.0 1.0 0.0 0.0 0.0 0.0 1.0 0.0 2 'point symmetry operation' ? ? -0.80901699 -0.5 0.30901699 267.5866213 -0.5 0.30901699 -0.80901699 266.4193938 0.30901699 -0.80901699 -0.5 265.6980075 3 'point symmetry operation' ? ? 0.0 1.0 0.0 0.0 0.0 0.0 -1.0 266.2200075 -1.0 0.0 0.0 266.2200075 4 'point symmetry operation' ? ? 0.80901699 -0.5 -0.30901699 133.30939 -0.5 -0.30901699 -0.80901699 349.0085141 0.30901699 0.80901699 -0.5 49.47688342 5 'point symmetry operation' ? ? 0.5 0.30901699 -0.80901699 132.78739 -0.30901699 -0.80901699 -0.5 349.3311279 -0.80901699 0.5 -0.30901699 214.8545103 6 'point symmetry operation' ? ? -0.30901699 -0.80901699 -0.5 349.3311279 -0.80901699 0.5 -0.30901699 215.8985104 0.5 0.30901699 -0.80901699 131.74339 7 'point symmetry operation' ? ? -0.80901699 0.5 -0.30901699 215.8985104 0.5 0.30901699 -0.80901699 132.78739 -0.30901699 -0.80901699 -0.5 348.2871279 8 'point symmetry operation' ? ? -0.80901699 -0.5 -0.30901699 349.5305141 0.5 -0.30901699 -0.80901699 215.3765103 0.30901699 -0.80901699 0.5 133.1100038 9 'point symmetry operation' ? ? -0.30901699 0.80901699 -0.5 133.1100038 -0.80901699 -0.5 -0.30901699 349.5305141 -0.5 0.30901699 0.80901699 50.8434972 10 'point symmetry operation' ? ? 0.5 -0.30901699 -0.80901699 215.3765103 -0.30901699 0.80901699 -0.5 133.1100038 0.80901699 0.5 0.30901699 -83.3105066 11 'point symmetry operation' ? ? 0.0 0.0 -1.0 266.2200075 -1.0 0.0 0.0 267.2640076 0.0 1.0 0.0 -1.04400003 12 'point symmetry operation' ? ? -0.5 -0.30901699 -0.80901699 349.0085141 0.30901699 0.80901699 -0.5 50.52088345 0.80901699 -0.5 -0.30901699 132.26539 13 'point symmetry operation' ? ? -0.5 0.30901699 -0.80901699 266.4193938 0.30901699 -0.80901699 -0.5 266.7420076 -0.80901699 -0.5 0.30901699 266.5426213 14 'point symmetry operation' ? ? -0.30901699 -0.80901699 -0.5 349.3311279 0.80901699 -0.5 0.30901699 51.36549721 -0.5 -0.30901699 0.80901699 133.4326175 15 'point symmetry operation' ? ? -0.80901699 0.5 -0.30901699 215.8985104 -0.5 -0.30901699 0.80901699 134.4766176 0.30901699 0.80901699 0.5 -83.11112034 16 'point symmetry operation' ? ? 0.5 0.30901699 -0.80901699 132.78739 0.30901699 0.80901699 0.5 -82.06712031 0.80901699 -0.5 0.30901699 50.32149718 17 'point symmetry operation' ? ? -0.5 0.30901699 -0.80901699 266.4193938 -0.30901699 0.80901699 0.5 0.52200001 0.80901699 0.5 -0.30901699 -1.36661378 18 'point symmetry operation' ? ? 0.0 0.0 -1.0 266.2200075 1.0 0.0 0.0 0.0 0.0 -1.0 0.0 266.2200075 19 'point symmetry operation' ? ? -0.5 -0.30901699 -0.80901699 349.0085141 -0.30901699 -0.80901699 0.5 216.7431241 -0.80901699 0.5 0.30901699 132.9106175 20 'point symmetry operation' ? ? 0.0 -1.0 0.0 267.2640076 0.0 0.0 1.0 1.04400003 -1.0 0.0 0.0 266.2200075 21 'point symmetry operation' ? ? -0.80901699 0.5 0.30901699 133.9546175 0.5 0.30901699 0.80901699 -81.74450656 0.30901699 0.80901699 -0.5 49.47688342 22 'point symmetry operation' ? ? 0.80901699 0.5 -0.30901699 -0.32261375 0.5 -0.30901699 0.80901699 0.84461377 0.30901699 -0.80901699 -0.5 265.6980075 23 'point symmetry operation' ? ? -0.30901699 0.80901699 -0.5 133.1100038 0.80901699 0.5 0.30901699 -82.26650657 0.5 -0.30901699 -0.80901699 214.3325103 24 'point symmetry operation' ? ? 0.5 -0.30901699 -0.80901699 215.3765103 0.30901699 -0.80901699 0.5 134.1540038 -0.80901699 -0.5 -0.30901699 348.4865141 25 'point symmetry operation' ? ? -0.80901699 -0.5 -0.30901699 349.5305141 -0.5 0.30901699 0.80901699 51.88749723 -0.30901699 0.80901699 -0.5 132.0660037 26 'point symmetry operation' ? ? -0.30901699 -0.80901699 0.5 216.7431241 -0.80901699 0.5 0.30901699 133.9546175 -0.5 -0.30901699 -0.80901699 347.9645141 27 'point symmetry operation' ? ? -0.30901699 0.80901699 0.5 0.52200001 0.80901699 0.5 -0.30901699 -0.32261375 -0.5 0.30901699 -0.80901699 265.3753938 28 'point symmetry operation' ? ? 1.0 0.0 0.0 0.0 0.0 -1.0 0.0 267.2640076 0.0 0.0 -1.0 265.1760075 29 'point symmetry operation' ? ? 0.30901699 0.80901699 -0.5 50.52088345 0.80901699 -0.5 -0.30901699 133.30939 -0.5 -0.30901699 -0.80901699 347.9645141 30 'point symmetry operation' ? ? 0.30901699 -0.80901699 -0.5 266.7420076 -0.80901699 -0.5 0.30901699 267.5866213 -0.5 0.30901699 -0.80901699 265.3753938 31 'point symmetry operation' ? ? -1.0 0.0 0.0 267.2640076 0.0 1.0 0.0 0.0 0.0 0.0 -1.0 265.1760075 32 'point symmetry operation' ? ? 0.80901699 0.5 -0.30901699 -0.32261375 -0.5 0.30901699 -0.80901699 266.4193938 -0.30901699 0.80901699 0.5 -0.52200001 33 'point symmetry operation' ? ? 0.0 -1.0 0.0 267.2640076 0.0 0.0 -1.0 266.2200075 1.0 0.0 0.0 -1.04400003 34 'point symmetry operation' ? ? -0.80901699 0.5 0.30901699 133.9546175 -0.5 -0.30901699 -0.80901699 349.0085141 -0.30901699 -0.80901699 0.5 215.6991241 35 'point symmetry operation' ? ? -0.5 -0.30901699 0.80901699 134.4766176 -0.30901699 -0.80901699 -0.5 349.3311279 0.80901699 -0.5 0.30901699 50.32149718 36 'point symmetry operation' ? ? 0.30901699 0.80901699 0.5 -82.06712031 -0.80901699 0.5 -0.30901699 215.8985104 -0.5 -0.30901699 0.80901699 133.4326175 37 'point symmetry operation' ? ? 0.80901699 -0.5 0.30901699 51.36549721 0.5 0.30901699 -0.80901699 132.78739 0.30901699 0.80901699 0.5 -83.11112034 38 'point symmetry operation' ? ? 0.80901699 0.5 0.30901699 -82.26650657 0.5 -0.30901699 -0.80901699 215.3765103 -0.30901699 0.80901699 -0.5 132.0660037 39 'point symmetry operation' ? ? 0.30901699 -0.80901699 0.5 134.1540038 -0.80901699 -0.5 -0.30901699 349.5305141 0.5 -0.30901699 -0.80901699 214.3325103 40 'point symmetry operation' ? ? -0.5 0.30901699 0.80901699 51.88749723 -0.30901699 0.80901699 -0.5 133.1100038 -0.80901699 -0.5 -0.30901699 348.4865141 41 'point symmetry operation' ? ? 0.0 0.0 1.0 1.04400003 -1.0 0.0 0.0 267.2640076 0.0 -1.0 0.0 266.2200075 42 'point symmetry operation' ? ? 0.5 0.30901699 0.80901699 -81.74450656 0.30901699 0.80901699 -0.5 50.52088345 -0.80901699 0.5 0.30901699 132.9106175 43 'point symmetry operation' ? ? 0.5 -0.30901699 0.80901699 0.84461377 0.30901699 -0.80901699 -0.5 266.7420076 0.80901699 0.5 -0.30901699 -1.36661378 44 'point symmetry operation' ? ? 0.30901699 0.80901699 0.5 -82.06712031 0.80901699 -0.5 0.30901699 51.36549721 0.5 0.30901699 -0.80901699 131.74339 45 'point symmetry operation' ? ? 0.80901699 -0.5 0.30901699 51.36549721 -0.5 -0.30901699 0.80901699 134.4766176 -0.30901699 -0.80901699 -0.5 348.2871279 46 'point symmetry operation' ? ? -0.5 -0.30901699 0.80901699 134.4766176 0.30901699 0.80901699 0.5 -82.06712031 -0.80901699 0.5 -0.30901699 214.8545103 47 'point symmetry operation' ? ? 0.5 -0.30901699 0.80901699 0.84461377 -0.30901699 0.80901699 0.5 0.52200001 -0.80901699 -0.5 0.30901699 266.5426213 48 'point symmetry operation' ? ? 0.0 0.0 1.0 1.04400003 1.0 0.0 0.0 0.0 0.0 1.0 0.0 -1.04400003 49 'point symmetry operation' ? ? 0.5 0.30901699 0.80901699 -81.74450656 -0.30901699 -0.80901699 0.5 216.7431241 0.80901699 -0.5 -0.30901699 132.26539 50 'point symmetry operation' ? ? 0.0 1.0 0.0 0.0 0.0 0.0 1.0 1.04400003 1.0 0.0 0.0 -1.04400003 51 'point symmetry operation' ? ? 0.80901699 -0.5 -0.30901699 133.30939 0.5 0.30901699 0.80901699 -81.74450656 -0.30901699 -0.80901699 0.5 215.6991241 52 'point symmetry operation' ? ? -0.80901699 -0.5 0.30901699 267.5866213 0.5 -0.30901699 0.80901699 0.84461377 -0.30901699 0.80901699 0.5 -0.52200001 53 'point symmetry operation' ? ? 0.30901699 -0.80901699 0.5 134.1540038 0.80901699 0.5 0.30901699 -82.26650657 -0.5 0.30901699 0.80901699 50.8434972 54 'point symmetry operation' ? ? -0.5 0.30901699 0.80901699 51.88749723 0.30901699 -0.80901699 0.5 134.1540038 0.80901699 0.5 0.30901699 -83.3105066 55 'point symmetry operation' ? ? 0.80901699 0.5 0.30901699 -82.26650657 -0.5 0.30901699 0.80901699 51.88749723 0.30901699 -0.80901699 0.5 133.1100038 56 'point symmetry operation' ? ? 0.30901699 0.80901699 -0.5 50.52088345 -0.80901699 0.5 0.30901699 133.9546175 0.5 0.30901699 0.80901699 -82.78850659 57 'point symmetry operation' ? ? 0.30901699 -0.80901699 -0.5 266.7420076 0.80901699 0.5 -0.30901699 -0.32261375 0.5 -0.30901699 0.80901699 -0.19938626 58 'point symmetry operation' ? ? -1.0 0.0 0.0 267.2640076 0.0 -1.0 0.0 267.2640076 0.0 0.0 1.0 0.0 59 'point symmetry operation' ? ? -0.30901699 -0.80901699 0.5 216.7431241 0.80901699 -0.5 -0.30901699 133.30939 0.5 0.30901699 0.80901699 -82.78850659 60 'point symmetry operation' ? ? -0.30901699 0.80901699 0.5 0.52200001 -0.80901699 -0.5 0.30901699 267.5866213 0.5 -0.30901699 0.80901699 -0.19938626 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 LYS A 70 ? LEU A 75 ? LYS A 72 LEU A 77 5 ? 6 HELX_P HELX_P2 AA2 ASP A 127 ? GLY A 131 ? ASP A 129 GLY A 133 5 ? 5 HELX_P HELX_P3 AA3 VAL A 211 ? ALA A 215 ? VAL A 213 ALA A 217 1 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ALA 156 A . ? ALA 158 A PRO 157 A ? PRO 159 A 1 2.10 2 SER 194 A . ? SER 196 A PRO 195 A ? PRO 197 A 1 -2.78 3 ILE 244 A . ? ILE 246 A PRO 245 A ? PRO 247 A 1 -2.25 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 5 ? AA3 ? 4 ? AA4 ? 3 ? AA5 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA5 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 THR A 134 ? ARG A 135 ? THR A 136 ARG A 137 AA1 2 PHE A 31 ? PRO A 44 ? PHE A 33 PRO A 46 AA1 3 GLN A 243 ? PHE A 257 ? GLN A 245 PHE A 259 AA1 4 PHE A 92 ? ILE A 105 ? PHE A 94 ILE A 107 AA1 5 PHE A 178 ? LEU A 182 ? PHE A 180 LEU A 184 AA2 1 THR A 134 ? ARG A 135 ? THR A 136 ARG A 137 AA2 2 PHE A 31 ? PRO A 44 ? PHE A 33 PRO A 46 AA2 3 GLN A 243 ? PHE A 257 ? GLN A 245 PHE A 259 AA2 4 PHE A 92 ? ILE A 105 ? PHE A 94 ILE A 107 AA2 5 VAL A 209 ? SER A 210 ? VAL A 211 SER A 212 AA3 1 TRP A 62 ? PHE A 69 ? TRP A 64 PHE A 71 AA3 2 TRP A 219 ? ARG A 227 ? TRP A 221 ARG A 229 AA3 3 LEU A 116 ? LEU A 121 ? LEU A 118 LEU A 123 AA3 4 ARG A 170 ? ASN A 173 ? ARG A 172 ASN A 175 AA4 1 TRP A 62 ? PHE A 69 ? TRP A 64 PHE A 71 AA4 2 TRP A 219 ? ARG A 227 ? TRP A 221 ARG A 229 AA4 3 LYS A 185 ? PRO A 186 ? LYS A 187 PRO A 188 AA5 1 PHE A 188 ? ILE A 192 ? PHE A 190 ILE A 194 AA5 2 ALA A 197 ? TRP A 201 ? ALA A 199 TRP A 203 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O THR A 134 ? O THR A 136 N ASP A 42 ? N ASP A 44 AA1 2 3 N LEU A 39 ? N LEU A 41 O TYR A 249 ? O TYR A 251 AA1 3 4 O ASP A 250 ? O ASP A 252 N ARG A 101 ? N ARG A 103 AA1 4 5 N ILE A 100 ? N ILE A 102 O ARG A 180 ? O ARG A 182 AA2 1 2 O THR A 134 ? O THR A 136 N ASP A 42 ? N ASP A 44 AA2 2 3 N LEU A 39 ? N LEU A 41 O TYR A 249 ? O TYR A 251 AA2 3 4 O ASP A 250 ? O ASP A 252 N ARG A 101 ? N ARG A 103 AA2 4 5 N TYR A 93 ? N TYR A 95 O VAL A 209 ? O VAL A 211 AA3 1 2 N ASP A 65 ? N ASP A 67 O ILE A 224 ? O ILE A 226 AA3 2 3 O SER A 223 ? O SER A 225 N ALA A 120 ? N ALA A 122 AA3 3 4 N GLY A 117 ? N GLY A 119 O PHE A 172 ? O PHE A 174 AA4 1 2 N ASP A 65 ? N ASP A 67 O ILE A 224 ? O ILE A 226 AA4 2 3 O ASN A 220 ? O ASN A 222 N LYS A 185 ? N LYS A 187 AA5 1 2 N ILE A 192 ? N ILE A 194 O ALA A 197 ? O ALA A 199 # _pdbx_entry_details.entry_id 9YZ1 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification N # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9YZ1 _em_3d_fitting.method ? _em_3d_fitting.target_criteria 'Cross-correlation coefficient' _em_3d_fitting.details ;ChimeraX was used to perform rigid-body fitting of domains and modelling was performed using Coot and ISOLDE. Refinement was carried out in Phenix. ; _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space REAL _em_3d_fitting.ref_protocol 'FLEXIBLE FIT' # _em_3d_fitting_list.id 1 _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.pdb_entry_id 5J36 _em_3d_fitting_list.pdb_chain_id A _em_3d_fitting_list.pdb_chain_residue_range 25-257 _em_3d_fitting_list.details ? _em_3d_fitting_list.chain_id A _em_3d_fitting_list.chain_residue_range 25-257 _em_3d_fitting_list.source_name PDB _em_3d_fitting_list.type 'experimental model' _em_3d_fitting_list.accession_code 5J36 _em_3d_fitting_list.initial_refinement_model_id 1 # _em_3d_reconstruction.entry_id 9YZ1 _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm 'BACK PROJECTION' _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details 'Final reconstruction was generated using homogenous refinement in cryoSPARC, and sharpened locally using DeepEMhancer' _em_3d_reconstruction.resolution 2.26 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 26891 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages 1 _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 8.0 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'An icosahedral virus-like particle composed of the canine circovirus Cap protein' _em_entity_assembly.details ;Cap protein was recombinantly expressed and purified from E. coli in a pMSCG21 vector with an N-terminal His-tag followed by a linker and a TEV cleavage site. The His-tag was cleaved off before cryo-EM experiments. ; _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_image_scans.entry_id 9YZ1 _em_image_scans.id 1 _em_image_scans.number_digital_images ? _em_image_scans.details ? _em_image_scans.scanner_model ? _em_image_scans.sampling_size ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.citation_id ? _em_image_scans.dimension_height ? _em_image_scans.dimension_width ? _em_image_scans.frames_per_image 18 _em_image_scans.image_recording_id 1 _em_image_scans.used_frames_per_image 1-18 # _em_imaging.entry_id 9YZ1 _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_min 700 _em_imaging.nominal_defocus_max 3500 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification 130000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure 'COMA FREE' _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen NITROGEN _em_imaging.objective_aperture ? _em_imaging.microscope_serial_number ? _em_imaging.microscope_version ? # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type 'Quantifoil R1.2/1.3' _em_sample_support.details ? _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 9YZ1 _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 100 _em_vitrification.temp ? _em_vitrification.chamber_temperature 277.15 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details '1 s incubation time, blot time of 2 s, blot force of -2 and no drain time' # _em_experiment.entry_id 9YZ1 _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 9YZ1 _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry I # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 3 ? A SER 1 2 1 Y 1 A ARG 4 ? A ARG 2 3 1 Y 1 A ARG 5 ? A ARG 3 4 1 Y 1 A HIS 6 ? A HIS 4 5 1 Y 1 A ALA 7 ? A ALA 5 6 1 Y 1 A ARG 8 ? A ARG 6 7 1 Y 1 A ALA 9 ? A ALA 7 8 1 Y 1 A SER 10 ? A SER 8 9 1 Y 1 A ARG 11 ? A ARG 9 10 1 Y 1 A ARG 12 ? A ARG 10 11 1 Y 1 A ASN 13 ? A ASN 11 12 1 Y 1 A TYR 14 ? A TYR 12 13 1 Y 1 A ARG 15 ? A ARG 13 14 1 Y 1 A THR 16 ? A THR 14 15 1 Y 1 A ARG 17 ? A ARG 15 16 1 Y 1 A PRO 18 ? A PRO 16 17 1 Y 1 A LEU 19 ? A LEU 17 18 1 Y 1 A ASN 20 ? A ASN 18 19 1 Y 1 A ARG 21 ? A ARG 19 20 1 Y 1 A TYR 22 ? A TYR 20 21 1 Y 1 A ARG 23 ? A ARG 21 22 1 Y 1 A ARG 24 ? A ARG 22 23 1 Y 1 A ARG 25 ? A ARG 23 24 1 Y 1 A ARG 26 ? A ARG 24 25 1 Y 1 A GLN 27 ? A GLN 25 26 1 Y 1 A ASN 28 ? A ASN 26 27 1 Y 1 A ARG 29 ? A ARG 27 28 1 Y 1 A PHE 30 ? A PHE 28 29 1 Y 1 A HIS 81 ? A HIS 79 30 1 Y 1 A GLY 82 ? A GLY 80 31 1 Y 1 A THR 83 ? A THR 81 32 1 Y 1 A GLY 84 ? A GLY 82 33 1 Y 1 A ASP 85 ? A ASP 83 34 1 Y 1 A PHE 86 ? A PHE 84 35 1 Y 1 A GLN 87 ? A GLN 85 36 1 Y 1 A GLY 147 ? A GLY 145 37 1 Y 1 A ARG 148 ? A ARG 146 38 1 Y 1 A LEU 149 ? A LEU 147 39 1 Y 1 A GLU 150 ? A GLU 148 40 1 Y 1 A PRO 151 ? A PRO 149 41 1 Y 1 A LEU 270 ? A LEU 268 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 ILE N N N N 144 ILE CA C N S 145 ILE C C N N 146 ILE O O N N 147 ILE CB C N S 148 ILE CG1 C N N 149 ILE CG2 C N N 150 ILE CD1 C N N 151 ILE OXT O N N 152 ILE H H N N 153 ILE H2 H N N 154 ILE HA H N N 155 ILE HB H N N 156 ILE HG12 H N N 157 ILE HG13 H N N 158 ILE HG21 H N N 159 ILE HG22 H N N 160 ILE HG23 H N N 161 ILE HD11 H N N 162 ILE HD12 H N N 163 ILE HD13 H N N 164 ILE HXT H N N 165 LEU N N N N 166 LEU CA C N S 167 LEU C C N N 168 LEU O O N N 169 LEU CB C N N 170 LEU CG C N N 171 LEU CD1 C N N 172 LEU CD2 C N N 173 LEU OXT O N N 174 LEU H H N N 175 LEU H2 H N N 176 LEU HA H N N 177 LEU HB2 H N N 178 LEU HB3 H N N 179 LEU HG H N N 180 LEU HD11 H N N 181 LEU HD12 H N N 182 LEU HD13 H N N 183 LEU HD21 H N N 184 LEU HD22 H N N 185 LEU HD23 H N N 186 LEU HXT H N N 187 LYS N N N N 188 LYS CA C N S 189 LYS C C N N 190 LYS O O N N 191 LYS CB C N N 192 LYS CG C N N 193 LYS CD C N N 194 LYS CE C N N 195 LYS NZ N N N 196 LYS OXT O N N 197 LYS H H N N 198 LYS H2 H N N 199 LYS HA H N N 200 LYS HB2 H N N 201 LYS HB3 H N N 202 LYS HG2 H N N 203 LYS HG3 H N N 204 LYS HD2 H N N 205 LYS HD3 H N N 206 LYS HE2 H N N 207 LYS HE3 H N N 208 LYS HZ1 H N N 209 LYS HZ2 H N N 210 LYS HZ3 H N N 211 LYS HXT H N N 212 MET N N N N 213 MET CA C N S 214 MET C C N N 215 MET O O N N 216 MET CB C N N 217 MET CG C N N 218 MET SD S N N 219 MET CE C N N 220 MET OXT O N N 221 MET H H N N 222 MET H2 H N N 223 MET HA H N N 224 MET HB2 H N N 225 MET HB3 H N N 226 MET HG2 H N N 227 MET HG3 H N N 228 MET HE1 H N N 229 MET HE2 H N N 230 MET HE3 H N N 231 MET HXT H N N 232 PHE N N N N 233 PHE CA C N S 234 PHE C C N N 235 PHE O O N N 236 PHE CB C N N 237 PHE CG C Y N 238 PHE CD1 C Y N 239 PHE CD2 C Y N 240 PHE CE1 C Y N 241 PHE CE2 C Y N 242 PHE CZ C Y N 243 PHE OXT O N N 244 PHE H H N N 245 PHE H2 H N N 246 PHE HA H N N 247 PHE HB2 H N N 248 PHE HB3 H N N 249 PHE HD1 H N N 250 PHE HD2 H N N 251 PHE HE1 H N N 252 PHE HE2 H N N 253 PHE HZ H N N 254 PHE HXT H N N 255 PRO N N N N 256 PRO CA C N S 257 PRO C C N N 258 PRO O O N N 259 PRO CB C N N 260 PRO CG C N N 261 PRO CD C N N 262 PRO OXT O N N 263 PRO H H N N 264 PRO HA H N N 265 PRO HB2 H N N 266 PRO HB3 H N N 267 PRO HG2 H N N 268 PRO HG3 H N N 269 PRO HD2 H N N 270 PRO HD3 H N N 271 PRO HXT H N N 272 SER N N N N 273 SER CA C N S 274 SER C C N N 275 SER O O N N 276 SER CB C N N 277 SER OG O N N 278 SER OXT O N N 279 SER H H N N 280 SER H2 H N N 281 SER HA H N N 282 SER HB2 H N N 283 SER HB3 H N N 284 SER HG H N N 285 SER HXT H N N 286 THR N N N N 287 THR CA C N S 288 THR C C N N 289 THR O O N N 290 THR CB C N R 291 THR OG1 O N N 292 THR CG2 C N N 293 THR OXT O N N 294 THR H H N N 295 THR H2 H N N 296 THR HA H N N 297 THR HB H N N 298 THR HG1 H N N 299 THR HG21 H N N 300 THR HG22 H N N 301 THR HG23 H N N 302 THR HXT H N N 303 TRP N N N N 304 TRP CA C N S 305 TRP C C N N 306 TRP O O N N 307 TRP CB C N N 308 TRP CG C Y N 309 TRP CD1 C Y N 310 TRP CD2 C Y N 311 TRP NE1 N Y N 312 TRP CE2 C Y N 313 TRP CE3 C Y N 314 TRP CZ2 C Y N 315 TRP CZ3 C Y N 316 TRP CH2 C Y N 317 TRP OXT O N N 318 TRP H H N N 319 TRP H2 H N N 320 TRP HA H N N 321 TRP HB2 H N N 322 TRP HB3 H N N 323 TRP HD1 H N N 324 TRP HE1 H N N 325 TRP HE3 H N N 326 TRP HZ2 H N N 327 TRP HZ3 H N N 328 TRP HH2 H N N 329 TRP HXT H N N 330 TYR N N N N 331 TYR CA C N S 332 TYR C C N N 333 TYR O O N N 334 TYR CB C N N 335 TYR CG C Y N 336 TYR CD1 C Y N 337 TYR CD2 C Y N 338 TYR CE1 C Y N 339 TYR CE2 C Y N 340 TYR CZ C Y N 341 TYR OH O N N 342 TYR OXT O N N 343 TYR H H N N 344 TYR H2 H N N 345 TYR HA H N N 346 TYR HB2 H N N 347 TYR HB3 H N N 348 TYR HD1 H N N 349 TYR HD2 H N N 350 TYR HE1 H N N 351 TYR HE2 H N N 352 TYR HH H N N 353 TYR HXT H N N 354 VAL N N N N 355 VAL CA C N S 356 VAL C C N N 357 VAL O O N N 358 VAL CB C N N 359 VAL CG1 C N N 360 VAL CG2 C N N 361 VAL OXT O N N 362 VAL H H N N 363 VAL H2 H N N 364 VAL HA H N N 365 VAL HB H N N 366 VAL HG11 H N N 367 VAL HG12 H N N 368 VAL HG13 H N N 369 VAL HG21 H N N 370 VAL HG22 H N N 371 VAL HG23 H N N 372 VAL HXT H N N 373 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 ILE N CA sing N N 137 ILE N H sing N N 138 ILE N H2 sing N N 139 ILE CA C sing N N 140 ILE CA CB sing N N 141 ILE CA HA sing N N 142 ILE C O doub N N 143 ILE C OXT sing N N 144 ILE CB CG1 sing N N 145 ILE CB CG2 sing N N 146 ILE CB HB sing N N 147 ILE CG1 CD1 sing N N 148 ILE CG1 HG12 sing N N 149 ILE CG1 HG13 sing N N 150 ILE CG2 HG21 sing N N 151 ILE CG2 HG22 sing N N 152 ILE CG2 HG23 sing N N 153 ILE CD1 HD11 sing N N 154 ILE CD1 HD12 sing N N 155 ILE CD1 HD13 sing N N 156 ILE OXT HXT sing N N 157 LEU N CA sing N N 158 LEU N H sing N N 159 LEU N H2 sing N N 160 LEU CA C sing N N 161 LEU CA CB sing N N 162 LEU CA HA sing N N 163 LEU C O doub N N 164 LEU C OXT sing N N 165 LEU CB CG sing N N 166 LEU CB HB2 sing N N 167 LEU CB HB3 sing N N 168 LEU CG CD1 sing N N 169 LEU CG CD2 sing N N 170 LEU CG HG sing N N 171 LEU CD1 HD11 sing N N 172 LEU CD1 HD12 sing N N 173 LEU CD1 HD13 sing N N 174 LEU CD2 HD21 sing N N 175 LEU CD2 HD22 sing N N 176 LEU CD2 HD23 sing N N 177 LEU OXT HXT sing N N 178 LYS N CA sing N N 179 LYS N H sing N N 180 LYS N H2 sing N N 181 LYS CA C sing N N 182 LYS CA CB sing N N 183 LYS CA HA sing N N 184 LYS C O doub N N 185 LYS C OXT sing N N 186 LYS CB CG sing N N 187 LYS CB HB2 sing N N 188 LYS CB HB3 sing N N 189 LYS CG CD sing N N 190 LYS CG HG2 sing N N 191 LYS CG HG3 sing N N 192 LYS CD CE sing N N 193 LYS CD HD2 sing N N 194 LYS CD HD3 sing N N 195 LYS CE NZ sing N N 196 LYS CE HE2 sing N N 197 LYS CE HE3 sing N N 198 LYS NZ HZ1 sing N N 199 LYS NZ HZ2 sing N N 200 LYS NZ HZ3 sing N N 201 LYS OXT HXT sing N N 202 MET N CA sing N N 203 MET N H sing N N 204 MET N H2 sing N N 205 MET CA C sing N N 206 MET CA CB sing N N 207 MET CA HA sing N N 208 MET C O doub N N 209 MET C OXT sing N N 210 MET CB CG sing N N 211 MET CB HB2 sing N N 212 MET CB HB3 sing N N 213 MET CG SD sing N N 214 MET CG HG2 sing N N 215 MET CG HG3 sing N N 216 MET SD CE sing N N 217 MET CE HE1 sing N N 218 MET CE HE2 sing N N 219 MET CE HE3 sing N N 220 MET OXT HXT sing N N 221 PHE N CA sing N N 222 PHE N H sing N N 223 PHE N H2 sing N N 224 PHE CA C sing N N 225 PHE CA CB sing N N 226 PHE CA HA sing N N 227 PHE C O doub N N 228 PHE C OXT sing N N 229 PHE CB CG sing N N 230 PHE CB HB2 sing N N 231 PHE CB HB3 sing N N 232 PHE CG CD1 doub Y N 233 PHE CG CD2 sing Y N 234 PHE CD1 CE1 sing Y N 235 PHE CD1 HD1 sing N N 236 PHE CD2 CE2 doub Y N 237 PHE CD2 HD2 sing N N 238 PHE CE1 CZ doub Y N 239 PHE CE1 HE1 sing N N 240 PHE CE2 CZ sing Y N 241 PHE CE2 HE2 sing N N 242 PHE CZ HZ sing N N 243 PHE OXT HXT sing N N 244 PRO N CA sing N N 245 PRO N CD sing N N 246 PRO N H sing N N 247 PRO CA C sing N N 248 PRO CA CB sing N N 249 PRO CA HA sing N N 250 PRO C O doub N N 251 PRO C OXT sing N N 252 PRO CB CG sing N N 253 PRO CB HB2 sing N N 254 PRO CB HB3 sing N N 255 PRO CG CD sing N N 256 PRO CG HG2 sing N N 257 PRO CG HG3 sing N N 258 PRO CD HD2 sing N N 259 PRO CD HD3 sing N N 260 PRO OXT HXT sing N N 261 SER N CA sing N N 262 SER N H sing N N 263 SER N H2 sing N N 264 SER CA C sing N N 265 SER CA CB sing N N 266 SER CA HA sing N N 267 SER C O doub N N 268 SER C OXT sing N N 269 SER CB OG sing N N 270 SER CB HB2 sing N N 271 SER CB HB3 sing N N 272 SER OG HG sing N N 273 SER OXT HXT sing N N 274 THR N CA sing N N 275 THR N H sing N N 276 THR N H2 sing N N 277 THR CA C sing N N 278 THR CA CB sing N N 279 THR CA HA sing N N 280 THR C O doub N N 281 THR C OXT sing N N 282 THR CB OG1 sing N N 283 THR CB CG2 sing N N 284 THR CB HB sing N N 285 THR OG1 HG1 sing N N 286 THR CG2 HG21 sing N N 287 THR CG2 HG22 sing N N 288 THR CG2 HG23 sing N N 289 THR OXT HXT sing N N 290 TRP N CA sing N N 291 TRP N H sing N N 292 TRP N H2 sing N N 293 TRP CA C sing N N 294 TRP CA CB sing N N 295 TRP CA HA sing N N 296 TRP C O doub N N 297 TRP C OXT sing N N 298 TRP CB CG sing N N 299 TRP CB HB2 sing N N 300 TRP CB HB3 sing N N 301 TRP CG CD1 doub Y N 302 TRP CG CD2 sing Y N 303 TRP CD1 NE1 sing Y N 304 TRP CD1 HD1 sing N N 305 TRP CD2 CE2 doub Y N 306 TRP CD2 CE3 sing Y N 307 TRP NE1 CE2 sing Y N 308 TRP NE1 HE1 sing N N 309 TRP CE2 CZ2 sing Y N 310 TRP CE3 CZ3 doub Y N 311 TRP CE3 HE3 sing N N 312 TRP CZ2 CH2 doub Y N 313 TRP CZ2 HZ2 sing N N 314 TRP CZ3 CH2 sing Y N 315 TRP CZ3 HZ3 sing N N 316 TRP CH2 HH2 sing N N 317 TRP OXT HXT sing N N 318 TYR N CA sing N N 319 TYR N H sing N N 320 TYR N H2 sing N N 321 TYR CA C sing N N 322 TYR CA CB sing N N 323 TYR CA HA sing N N 324 TYR C O doub N N 325 TYR C OXT sing N N 326 TYR CB CG sing N N 327 TYR CB HB2 sing N N 328 TYR CB HB3 sing N N 329 TYR CG CD1 doub Y N 330 TYR CG CD2 sing Y N 331 TYR CD1 CE1 sing Y N 332 TYR CD1 HD1 sing N N 333 TYR CD2 CE2 doub Y N 334 TYR CD2 HD2 sing N N 335 TYR CE1 CZ doub Y N 336 TYR CE1 HE1 sing N N 337 TYR CE2 CZ sing Y N 338 TYR CE2 HE2 sing N N 339 TYR CZ OH sing N N 340 TYR OH HH sing N N 341 TYR OXT HXT sing N N 342 VAL N CA sing N N 343 VAL N H sing N N 344 VAL N H2 sing N N 345 VAL CA C sing N N 346 VAL CA CB sing N N 347 VAL CA HA sing N N 348 VAL C O doub N N 349 VAL C OXT sing N N 350 VAL CB CG1 sing N N 351 VAL CB CG2 sing N N 352 VAL CB HB sing N N 353 VAL CG1 HG11 sing N N 354 VAL CG1 HG12 sing N N 355 VAL CG1 HG13 sing N N 356 VAL CG2 HG21 sing N N 357 VAL CG2 HG22 sing N N 358 VAL CG2 HG23 sing N N 359 VAL OXT HXT sing N N 360 # _em_admin.current_status REL _em_admin.deposition_date 2025-10-29 _em_admin.deposition_site RCSB _em_admin.entry_id 9YZ1 _em_admin.last_update 2026-10-07 _em_admin.map_release_date 2026-10-07 _em_admin.title 'Structure of a canine circovirus virus-like particle' # _em_ctf_correction.details 'Defocus values were estimated using patch CTF estimation, and CTF correction was performed during 3D reconstruction' _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type NONE # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units MEGADALTONS _em_entity_assembly_molwt.value 1.87 # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 1194757 _em_entity_assembly_naturalsource.organism 'Canine circovirus' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain 'Isolate 214' _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 562 _em_entity_assembly_recombinant.organism 'Escherichia coli' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time 7.2 _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 57 _em_image_recording.details ? _em_image_recording.detector_mode SUPER-RESOLUTION _em_image_recording.film_or_detector_model 'GATAN K2 QUANTUM (4k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 304 # _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_slit_width ? _em_imaging_optics.energyfilter_name 'GIF Bioquantum' _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.phase_plate ? _em_imaging_optics.sph_aberration_corrector ? _em_imaging_optics.details ? # _em_particle_selection.details 'Blob picking' _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.method ? _em_particle_selection.num_particles_selected 32271 _em_particle_selection.reference_model ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version _em_software.reference_DOI 'PARTICLE SELECTION' ? 1 1 ? ? cryoSPARC 4.3.1 ? 'IMAGE ACQUISITION' ? 2 ? ? 1 EPU 1 ? MASKING ? 3 ? ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? cryoSPARC 4.3.1 ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? ISOLDE 1.6.0 ? 'MODEL FITTING' ? 8 ? 1 ? Coot 0.9.8.3 ? 'MODEL FITTING' ? 9 ? 1 ? 'UCSF ChimeraX' 1.6.1 ? OTHER ? 10 ? ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 11 1 ? ? cryoSPARC 4.3.1 ? 'FINAL EULER ASSIGNMENT' ? 12 1 ? ? cryoSPARC 4.3.1 ? CLASSIFICATION ? 13 1 ? ? cryoSPARC 4.3.1 ? RECONSTRUCTION ? 14 1 ? ? cryoSPARC 4.3.1 ? 'MODEL REFINEMENT' ? 15 ? 1 ? PHENIX 1.20.1_4887 ? 'VOLUME SELECTION' ? 16 1 1 1 ? ? ? 'SERIES ALIGNMENT' ? 17 1 1 1 ? ? ? 'MOLECULAR REPLACEMENT' ? 18 1 1 1 ? ? ? 'LATTICE DISTORTION CORRECTION' ? 19 1 1 1 ? ? ? 'SYMMETRY DETERMINATION' ? 20 1 1 1 ? ? ? 'CRYSTALLOGRAPHY MERGING' ? 21 1 1 1 ? ? ? # _em_specimen.concentration 9.2 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Not funded' _pdbx_audit_support.country Australia _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5J36 _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 9YZ1 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O S # loop_ #