HEADER VIRAL PROTEIN 30-OCT-25 9YZ7 TITLE CRYSTAL STRUCTURE OF VHH MOD225 IN COMPLEX WITH SARS-COV-2 KP.3 RBD COMPND MOL_ID: 1; COMPND 2 MOLECULE: SARS-COV-2 KP.3 RBD; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: VHH MOD225; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 8 ORGANISM_TAXID: 9844; SOURCE 9 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 10029 KEYWDS COVID, SARS-COV-2, SPIKE PROTEIN, RBD, NEUTRALIZING ANTIBODY, MRNA, KEYWDS 2 VHH, NANOBODY, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.F.BENDER,A.R.LACIAK,A.SHARMA REVDAT 1 12-AUG-26 9YZ7 0 JRNL AUTH A.Z.WEC,A.CHO,S.PECETTA,J.HU,M.F.BENDER,A.R.LACIAK,J.HOU, JRNL AUTH 2 A.SHARMA,N.BOPP,S.SAZINSKY,D.MONTES-BERRUETA,T.SPIEDEL, JRNL AUTH 3 D.LEE,P.B.J.REDDY,Y.CAO,A.CARFI,W.R.SCHIEF,L.M.WALKER JRNL TITL MULTIPLEXED DELIVERY OF MRNA-ENCODED BISPECIFIC ANTIBODIES JRNL TITL 2 CONSTRAINS VIRAL ESCAPE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0430 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 20975 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1115 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1535 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.3690 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.3290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2531 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 64 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.31000 REMARK 3 B22 (A**2) : 0.31000 REMARK 3 B33 (A**2) : -0.99000 REMARK 3 B12 (A**2) : 0.15000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.248 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.203 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.192 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.443 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2670 ; 0.010 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2408 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3620 ; 1.668 ; 1.813 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5540 ; 0.555 ; 1.736 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 323 ; 6.522 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 16 ;15.477 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 388 ;15.452 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 376 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3170 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 672 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1286 ; 4.522 ; 5.029 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1286 ; 4.514 ; 5.030 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1605 ; 6.124 ; 9.039 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1606 ; 6.131 ; 9.042 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1384 ; 6.470 ; 5.663 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1385 ; 6.475 ; 5.665 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2014 ; 9.342 ;10.119 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 10504 ;10.925 ;63.280 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 10488 ;10.929 ;63.260 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 333 A 526 REMARK 3 ORIGIN FOR THE GROUP (A): 16.805 -25.583 3.295 REMARK 3 T TENSOR REMARK 3 T11: 0.0736 T22: 0.0620 REMARK 3 T33: 0.0703 T12: 0.0015 REMARK 3 T13: -0.0215 T23: 0.0126 REMARK 3 L TENSOR REMARK 3 L11: 3.3471 L22: 3.3407 REMARK 3 L33: 3.8579 L12: 1.4310 REMARK 3 L13: -0.6463 L23: 1.6074 REMARK 3 S TENSOR REMARK 3 S11: -0.0539 S12: -0.0155 S13: 0.4102 REMARK 3 S21: -0.2584 S22: 0.1423 S23: 0.1126 REMARK 3 S31: -0.4565 S32: -0.1580 S33: -0.0884 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 113 REMARK 3 ORIGIN FOR THE GROUP (A): -2.769 -52.700 17.456 REMARK 3 T TENSOR REMARK 3 T11: 0.0896 T22: 0.0580 REMARK 3 T33: 0.0713 T12: -0.0608 REMARK 3 T13: 0.0438 T23: -0.0565 REMARK 3 L TENSOR REMARK 3 L11: 3.4804 L22: 7.7920 REMARK 3 L33: 3.1360 L12: 2.6384 REMARK 3 L13: -1.3151 L23: -1.3322 REMARK 3 S TENSOR REMARK 3 S11: -0.1351 S12: 0.2663 S13: -0.3512 REMARK 3 S21: 0.1324 S22: -0.0168 S23: -0.0437 REMARK 3 S31: 0.3959 S32: -0.2201 S33: 0.1519 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 9YZ7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-OCT-25. REMARK 100 THE DEPOSITION ID IS D_1000300572. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-SEP-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22124 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 46.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 19.60 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 20.20 REMARK 200 R MERGE FOR SHELL (I) : 3.81100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM IODIDE; 17.5% W/V PEG REMARK 280 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.31600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 80.63200 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 80.63200 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 40.31600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 I IOD A 611 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 751 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 329 REMARK 465 PRO A 330 REMARK 465 ASN A 331 REMARK 465 VAL A 332 REMARK 465 LYS A 527 REMARK 465 GLY A 528 REMARK 465 GLY A 529 REMARK 465 LEU A 530 REMARK 465 GLU A 531 REMARK 465 VAL A 532 REMARK 465 LEU A 533 REMARK 465 PHE A 534 REMARK 465 GLN A 535 REMARK 465 GLN B 1 REMARK 465 GLY B 114 REMARK 465 GLY B 115 REMARK 465 HIS B 116 REMARK 465 HIS B 117 REMARK 465 HIS B 118 REMARK 465 HIS B 119 REMARK 465 HIS B 120 REMARK 465 HIS B 121 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 457 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 457 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG B 100J NE - CZ - NH1 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 352 41.25 -103.25 REMARK 500 ASN A 422 -58.54 -125.31 REMARK 500 ARG B 100J 77.53 -154.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 355 0.08 SIDE CHAIN REMARK 500 ARG B 45 0.18 SIDE CHAIN REMARK 500 ARG B 100J 0.24 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9YZ8 RELATED DB: PDB REMARK 900 RELATED ID: 9YZ9 RELATED DB: PDB DBREF 9YZ7 A 329 535 PDB 9YZ7 9YZ7 329 535 DBREF 9YZ7 B 1 121 PDB 9YZ7 9YZ7 1 121 SEQRES 1 A 207 GLN PRO ASN VAL THR ASN LEU CYS PRO PHE HIS GLU VAL SEQRES 2 A 207 PHE ASN ALA THR ARG PHE ALA SER VAL TYR ALA TRP ASN SEQRES 3 A 207 ARG THR ARG ILE SER ASN CYS VAL ALA ASP TYR SER VAL SEQRES 4 A 207 LEU TYR ASN PHE ALA PRO PHE PHE ALA PHE LYS CYS TYR SEQRES 5 A 207 GLY VAL SER PRO THR LYS LEU ASN ASP LEU CYS PHE THR SEQRES 6 A 207 ASN VAL TYR ALA ASP SER PHE VAL ILE LYS GLY ASN GLU SEQRES 7 A 207 VAL SER GLN ILE ALA PRO GLY GLN THR GLY ASN ILE ALA SEQRES 8 A 207 ASP TYR ASN TYR LYS LEU PRO ASP ASP PHE THR GLY CYS SEQRES 9 A 207 VAL ILE ALA TRP ASN SER ASN LYS LEU ASP SER LYS HIS SEQRES 10 A 207 SER GLY ASN TYR ASP TYR TRP TYR ARG SER LEU ARG LYS SEQRES 11 A 207 SER LYS LEU LYS PRO PHE GLU ARG ASP ILE SER THR GLU SEQRES 12 A 207 ILE TYR GLN ALA GLY ASN LYS PRO CYS LYS GLY LYS GLY SEQRES 13 A 207 PRO ASN CYS TYR PHE PRO LEU GLU SER TYR GLY PHE ARG SEQRES 14 A 207 PRO THR TYR GLY VAL GLY HIS GLN PRO TYR ARG VAL VAL SEQRES 15 A 207 VAL LEU SER PHE GLU LEU LEU HIS ALA PRO ALA THR VAL SEQRES 16 A 207 CYS GLY PRO LYS GLY GLY LEU GLU VAL LEU PHE GLN SEQRES 1 B 136 GLN VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 B 136 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 B 136 PHE THR LEU ASP TYR TYR ALA ILE GLY TRP PHE ARG GLN SEQRES 4 B 136 ALA PRO GLY LYS GLU ARG GLU VAL VAL SER CYS ILE SER SEQRES 5 B 136 THR ASN ASN ASP GLY SER THR TYR TYR ALA ASP SER VAL SEQRES 6 B 136 LYS GLY ARG PHE THR ILE ALA ARG ASP SER ALA LYS ASN SEQRES 7 B 136 THR VAL TYR LEU GLN MET ASN SER LEU LYS PRO PRO ASP SEQRES 8 B 136 THR ALA VAL TYR TYR CYS ALA THR VAL VAL ASP TYR GLU SEQRES 9 B 136 LEU GLY TYR PRO ARG CYS TYR PRO HIS GLU ARG GLY TYR SEQRES 10 B 136 TRP GLY GLN GLY THR GLN VAL THR VAL SER SER GLY GLY SEQRES 11 B 136 HIS HIS HIS HIS HIS HIS HET NAG A 601 14 HET EDO A 602 4 HET EDO A 603 4 HET EDO A 604 4 HET EDO A 605 4 HET EDO A 606 4 HET EDO A 607 4 HET EDO A 608 4 HET EDO A 609 4 HET EDO A 610 4 HET IOD A 611 1 HET IOD A 612 1 HET EDO B 201 4 HET IOD B 202 1 HET IOD B 203 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETNAM IOD IODIDE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NAG C8 H15 N O6 FORMUL 4 EDO 10(C2 H6 O2) FORMUL 13 IOD 4(I 1-) FORMUL 18 HOH *64(H2 O) HELIX 1 AA1 PRO A 337 ASN A 343 1 7 HELIX 2 AA2 ASP A 364 ALA A 372 5 9 HELIX 3 AA3 LYS A 386 ASP A 389 5 4 HELIX 4 AA4 ASN A 405 ILE A 410 5 6 HELIX 5 AA5 GLY A 416 ASN A 422 1 7 HELIX 6 AA6 SER A 438 SER A 443 1 6 HELIX 7 AA7 GLY A 501 HIS A 504 5 4 HELIX 8 AA8 SER B 73 LYS B 75 5 3 HELIX 9 AA9 LYS B 83 THR B 87 5 5 SHEET 1 AA1 5 ASN A 354 ILE A 358 0 SHEET 2 AA1 5 ASN A 394 LYS A 403 -1 O VAL A 395 N ILE A 358 SHEET 3 AA1 5 PRO A 506 GLU A 515 -1 O VAL A 511 N ASP A 398 SHEET 4 AA1 5 GLY A 431 ASN A 437 -1 N ILE A 434 O VAL A 510 SHEET 5 AA1 5 ALA A 376 TYR A 380 -1 N TYR A 380 O GLY A 431 SHEET 1 AA2 3 CYS A 361 VAL A 362 0 SHEET 2 AA2 3 VAL A 523 CYS A 524 1 O CYS A 524 N CYS A 361 SHEET 3 AA2 3 CYS A 391 PHE A 392 -1 N PHE A 392 O VAL A 523 SHEET 1 AA3 2 TRP A 452 ARG A 454 0 SHEET 2 AA3 2 LEU A 491 SER A 493 -1 O GLU A 492 N TYR A 453 SHEET 1 AA4 2 TYR A 473 GLN A 474 0 SHEET 2 AA4 2 CYS A 487 TYR A 488 -1 O TYR A 488 N TYR A 473 SHEET 1 AA5 4 GLN B 3 SER B 7 0 SHEET 2 AA5 4 LEU B 18 SER B 25 -1 O ALA B 23 N VAL B 5 SHEET 3 AA5 4 THR B 77 MET B 82 -1 O MET B 82 N LEU B 18 SHEET 4 AA5 4 PHE B 67 ASP B 72 -1 N THR B 68 O GLN B 81 SHEET 1 AA6 6 GLY B 10 VAL B 12 0 SHEET 2 AA6 6 THR B 107 VAL B 111 1 O THR B 110 N VAL B 12 SHEET 3 AA6 6 ALA B 88 THR B 94 -1 N TYR B 90 O THR B 107 SHEET 4 AA6 6 ILE B 34 GLN B 39 -1 N PHE B 37 O TYR B 91 SHEET 5 AA6 6 GLU B 46 ILE B 51 -1 O GLU B 46 N ARG B 38 SHEET 6 AA6 6 THR B 57 TYR B 59 -1 O TYR B 58 N CYS B 50 SSBOND 1 CYS A 336 CYS A 361 1555 1555 2.08 SSBOND 2 CYS A 379 CYS A 432 1555 1555 2.19 SSBOND 3 CYS A 391 CYS A 524 1555 1555 2.11 SSBOND 4 CYS A 480 CYS A 487 1555 1555 2.39 SSBOND 5 CYS B 22 CYS B 92 1555 1555 2.50 SSBOND 6 CYS B 50 CYS B 100E 1555 1555 2.06 LINK ND2 ASN A 354 C1 NAG A 601 1555 1555 1.44 CISPEP 1 ALA A 372 PRO A 373 0 15.09 CRYST1 85.953 85.953 120.948 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011634 0.006717 0.000000 0.00000 SCALE2 0.000000 0.013434 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008268 0.00000 CONECT 29 240 CONECT 183 2547 CONECT 240 29 CONECT 389 799 CONECT 479 1548 CONECT 799 389 CONECT 1202 1249 CONECT 1249 1202 CONECT 1548 479 CONECT 1702 2297 CONECT 1930 2400 CONECT 2297 1702 CONECT 2400 1930 CONECT 2547 183 2548 2558 CONECT 2548 2547 2549 2555 CONECT 2549 2548 2550 2556 CONECT 2550 2549 2551 2557 CONECT 2551 2550 2552 2558 CONECT 2552 2551 2559 CONECT 2553 2554 2555 2560 CONECT 2554 2553 CONECT 2555 2548 2553 CONECT 2556 2549 CONECT 2557 2550 CONECT 2558 2547 2551 CONECT 2559 2552 CONECT 2560 2553 CONECT 2561 2562 2563 CONECT 2562 2561 CONECT 2563 2561 2564 CONECT 2564 2563 CONECT 2565 2566 2567 CONECT 2566 2565 CONECT 2567 2565 2568 CONECT 2568 2567 CONECT 2569 2570 2571 CONECT 2570 2569 CONECT 2571 2569 2572 CONECT 2572 2571 CONECT 2573 2574 2575 CONECT 2574 2573 CONECT 2575 2573 2576 CONECT 2576 2575 CONECT 2577 2578 2579 CONECT 2578 2577 CONECT 2579 2577 2580 CONECT 2580 2579 CONECT 2581 2582 2583 CONECT 2582 2581 CONECT 2583 2581 2584 CONECT 2584 2583 CONECT 2585 2586 2587 CONECT 2586 2585 CONECT 2587 2585 2588 CONECT 2588 2587 CONECT 2589 2590 2591 CONECT 2590 2589 CONECT 2591 2589 2592 CONECT 2592 2591 CONECT 2593 2594 2595 CONECT 2594 2593 CONECT 2595 2593 2596 CONECT 2596 2595 CONECT 2599 2600 2601 CONECT 2600 2599 CONECT 2601 2599 2602 CONECT 2602 2601 MASTER 379 0 15 9 22 0 0 6 2653 2 67 27 END