HEADER DNA BINDING PROTEIN 30-OCT-25 9YZJ TITLE ISORETICULAR CO-CRYSTAL 1 WITH ASYMMETRICAL EXPANDED DUPLEX (31MER) TITLE 2 CONTAINING INSERT SEQUENCE CGTAATTAGG COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (31-MER); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (31-MER); COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: REPLICATION INITIATION PROTEIN; COMPND 11 CHAIN: C; COMPND 12 SYNONYM: PROTEIN E,PROTEIN REP,PROTEIN F4, REPLICATION INITIATOR COMPND 13 PROTEIN REPE54; COMPND 14 ENGINEERED: YES; COMPND 15 OTHER_DETAILS: REPLICATION INITIATOR PROTEIN REPE54 WITH N-TERMINAL COMPND 16 SOLUBILITY TAG AND N-TERMINAL 6XHIS TAG SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 4 ORGANISM_TAXID: 562; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 8 ORGANISM_TAXID: 562; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 11 ORGANISM_TAXID: 562; SOURCE 12 GENE: REPE, E, REP, ECOK12F045; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PROTEIN-DNA COMPLEX, DNA BINDING PROTEIN, TRANSCRIPTION FACTOR EXPDTA X-RAY DIFFRACTION AUTHOR E.T.SHIELDS,C.K.SLAUGHTER,E.N.MAGNA,C.D.SNOW REVDAT 1 18-FEB-26 9YZJ 0 JRNL AUTH E.T.SHIELDS,C.K.SLAUGHTER,F.MEKKAOUI,E.N.MAGNA,C.SHEPHERD, JRNL AUTH 2 P.S.LUKEMAN,D.E.SPRATT,C.D.SNOW JRNL TITL MODULAR SCAFFOLD CRYSTALS FOR PROGRAMMABLE INSTALLATION AND JRNL TITL 2 STRUCTURAL OBSERVATION OF DNA-BINDING PROTEINS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.LIEBSCHNER,P.V.AFONINE,M.L.BAKER,G.BUNKOCZI,V.B.CHEN, REMARK 1 AUTH 2 T.I.CROLL,B.HINTZE,L.W.HUNG,S.JAIN,A.J.MCCOY,N.W.MORIARTY, REMARK 1 AUTH 3 R.D.OEFFNER,B.K.POON,M.G.PRISANT,R.J.READ,J.S.RICHARDSON, REMARK 1 AUTH 4 D.C.RICHARDSON,M.D.SAMMITO,O.V.SOBOLEV,D.H.STOCKWELL, REMARK 1 AUTH 5 T.C.TERWILLIGER,A.G.URZHUMTSEV,L.L.VIDEAU,C.J.WILLIAMS, REMARK 1 AUTH 6 P.D.ADAMS REMARK 1 TITL MACROMOLECULAR STRUCTURE DETERMINATION USING X-RAYS, REMARK 1 TITL 2 NEUTRONS AND ELECTRONS: RECENT DEVELOPMENTS IN PHENIX REMARK 1 REF ACTA CRYSTALLOGR D STRUCT 2019 REMARK 1 REF 2 BIOL REMARK 1 REFN REMARK 1 PMID 31588918 REMARK 1 DOI 10.1107/S2059798319011471 REMARK 2 REMARK 2 RESOLUTION. 2.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.2_5419 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 21738 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.274 REMARK 3 R VALUE (WORKING SET) : 0.272 REMARK 3 FREE R VALUE : 0.292 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.990 REMARK 3 FREE R VALUE TEST SET COUNT : 2172 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.0100 - 7.7800 0.94 1227 142 0.2052 0.2314 REMARK 3 2 7.7700 - 6.1800 0.97 1219 133 0.2633 0.2798 REMARK 3 3 6.1800 - 5.4000 0.98 1250 143 0.2720 0.2719 REMARK 3 4 5.4000 - 4.9000 0.99 1226 133 0.2700 0.3068 REMARK 3 5 4.9000 - 4.5500 0.99 1271 149 0.2843 0.2827 REMARK 3 6 4.5500 - 4.2800 0.97 1211 133 0.2769 0.3254 REMARK 3 7 4.2800 - 4.0700 0.96 1222 132 0.2755 0.2896 REMARK 3 8 4.0700 - 3.8900 0.99 1241 128 0.2875 0.3405 REMARK 3 9 3.8900 - 3.7400 0.99 1238 146 0.2921 0.3269 REMARK 3 10 3.7400 - 3.6100 0.98 1257 111 0.2964 0.3051 REMARK 3 11 3.6100 - 3.5000 0.98 1221 154 0.3298 0.3145 REMARK 3 12 3.5000 - 3.4000 0.98 1209 141 0.3569 0.3181 REMARK 3 13 3.4000 - 3.3100 0.96 1189 149 0.3654 0.3695 REMARK 3 14 3.3100 - 3.2300 0.94 1200 121 0.3805 0.4119 REMARK 3 15 3.2300 - 3.1600 0.94 1186 131 0.4089 0.4200 REMARK 3 16 3.1600 - 2.9700 0.98 1199 126 0.4371 0.5107 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.479 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 36.507 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 99.16 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 156.2 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3088 REMARK 3 ANGLE : 1.016 4379 REMARK 3 CHIRALITY : 0.085 504 REMARK 3 PLANARITY : 0.010 362 REMARK 3 DIHEDRAL : 27.737 1232 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.7797 -20.8129 55.5777 REMARK 3 T TENSOR REMARK 3 T11: 2.5272 T22: 1.2382 REMARK 3 T33: 1.8135 T12: -0.0997 REMARK 3 T13: -0.8884 T23: 0.3699 REMARK 3 L TENSOR REMARK 3 L11: 9.3422 L22: 5.8008 REMARK 3 L33: 4.1210 L12: -7.2079 REMARK 3 L13: 4.5874 L23: -3.2093 REMARK 3 S TENSOR REMARK 3 S11: 1.3356 S12: 0.6887 S13: -1.2292 REMARK 3 S21: -0.1256 S22: -0.7661 S23: 0.9779 REMARK 3 S31: 1.4830 S32: 0.4977 S33: -0.7810 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.2774 -4.4529 41.6580 REMARK 3 T TENSOR REMARK 3 T11: 1.7320 T22: 1.4278 REMARK 3 T33: 1.5046 T12: -0.0980 REMARK 3 T13: -0.7886 T23: 0.4640 REMARK 3 L TENSOR REMARK 3 L11: 5.1691 L22: 6.2184 REMARK 3 L33: 4.0519 L12: -3.6217 REMARK 3 L13: -0.6110 L23: -1.8129 REMARK 3 S TENSOR REMARK 3 S11: 0.5425 S12: 1.5086 S13: -0.7609 REMARK 3 S21: -1.2959 S22: -0.9136 S23: 1.3415 REMARK 3 S31: -0.3876 S32: 0.4032 S33: -0.0453 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 16 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.4159 19.1732 21.2955 REMARK 3 T TENSOR REMARK 3 T11: 2.9827 T22: 2.3390 REMARK 3 T33: 2.0434 T12: 0.2489 REMARK 3 T13: -0.9837 T23: 0.9237 REMARK 3 L TENSOR REMARK 3 L11: 0.8805 L22: 1.4870 REMARK 3 L33: 0.8889 L12: 1.1229 REMARK 3 L13: -0.8457 L23: -1.1174 REMARK 3 S TENSOR REMARK 3 S11: 0.4869 S12: 0.2597 S13: 0.2020 REMARK 3 S21: 0.6385 S22: -0.1476 S23: 0.9086 REMARK 3 S31: -0.5391 S32: 0.8728 S33: 0.4588 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 13 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.8582 36.6599 13.8280 REMARK 3 T TENSOR REMARK 3 T11: 2.3088 T22: 3.0869 REMARK 3 T33: 2.2139 T12: -0.0055 REMARK 3 T13: -0.7873 T23: 1.2766 REMARK 3 L TENSOR REMARK 3 L11: 0.9703 L22: 2.6786 REMARK 3 L33: 5.5909 L12: -1.3899 REMARK 3 L13: 1.2215 L23: -1.2027 REMARK 3 S TENSOR REMARK 3 S11: -0.2774 S12: -0.3244 S13: -0.2710 REMARK 3 S21: 0.6463 S22: 0.6042 S23: 0.4181 REMARK 3 S31: 0.4132 S32: 0.2643 S33: -0.5991 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 18 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.9218 19.9794 18.9497 REMARK 3 T TENSOR REMARK 3 T11: 3.0768 T22: 2.4414 REMARK 3 T33: 2.2625 T12: 0.5470 REMARK 3 T13: -0.8166 T23: 1.1135 REMARK 3 L TENSOR REMARK 3 L11: 2.6600 L22: 0.4219 REMARK 3 L33: 2.1730 L12: -0.1841 REMARK 3 L13: 0.4854 L23: -0.4263 REMARK 3 S TENSOR REMARK 3 S11: -0.0241 S12: 0.1394 S13: -0.0709 REMARK 3 S21: 0.1455 S22: 0.0409 S23: 0.0935 REMARK 3 S31: 0.2031 S32: 0.3325 S33: 0.1145 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 23 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5689 -3.2132 39.2630 REMARK 3 T TENSOR REMARK 3 T11: 2.4698 T22: 1.5577 REMARK 3 T33: 1.7122 T12: 0.0564 REMARK 3 T13: -0.8579 T23: 0.5051 REMARK 3 L TENSOR REMARK 3 L11: 4.7113 L22: 1.2879 REMARK 3 L33: 1.5137 L12: -2.3932 REMARK 3 L13: 2.2745 L23: -1.2722 REMARK 3 S TENSOR REMARK 3 S11: 0.9345 S12: 1.0855 S13: -0.8743 REMARK 3 S21: -1.3111 S22: 0.1497 S23: 1.3283 REMARK 3 S31: 0.4903 S32: -0.6114 S33: -1.1607 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 38 THROUGH 43 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.1489 -27.1953 60.4526 REMARK 3 T TENSOR REMARK 3 T11: 2.7419 T22: 1.2209 REMARK 3 T33: 2.5238 T12: 0.1271 REMARK 3 T13: -0.6957 T23: 0.9451 REMARK 3 L TENSOR REMARK 3 L11: 0.5145 L22: 0.0684 REMARK 3 L33: 0.3388 L12: 0.0522 REMARK 3 L13: 0.1829 L23: 0.1491 REMARK 3 S TENSOR REMARK 3 S11: -0.3949 S12: -0.4833 S13: -1.0039 REMARK 3 S21: 0.3514 S22: 0.0290 S23: 0.0547 REMARK 3 S31: 0.9734 S32: 0.6066 S33: 0.2925 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 11 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.9399 11.8036 55.3640 REMARK 3 T TENSOR REMARK 3 T11: 0.9069 T22: 0.9380 REMARK 3 T33: 1.7763 T12: 0.0218 REMARK 3 T13: -0.3410 T23: 0.1903 REMARK 3 L TENSOR REMARK 3 L11: 5.4271 L22: 7.4333 REMARK 3 L33: 8.6168 L12: -2.1288 REMARK 3 L13: -1.4620 L23: 2.5856 REMARK 3 S TENSOR REMARK 3 S11: 0.6944 S12: 0.7731 S13: 1.3967 REMARK 3 S21: -0.0830 S22: 0.6475 S23: -0.6511 REMARK 3 S31: 0.5710 S32: 1.5135 S33: -1.4762 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 33 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.2354 15.5260 51.3728 REMARK 3 T TENSOR REMARK 3 T11: 1.5785 T22: 0.8806 REMARK 3 T33: 1.1047 T12: -0.0151 REMARK 3 T13: -0.1486 T23: 0.3325 REMARK 3 L TENSOR REMARK 3 L11: 9.4635 L22: 3.1065 REMARK 3 L33: 8.5542 L12: -3.6933 REMARK 3 L13: 1.2630 L23: 0.7919 REMARK 3 S TENSOR REMARK 3 S11: 0.7159 S12: 0.0602 S13: 1.5011 REMARK 3 S21: -0.9143 S22: -0.0070 S23: -0.2978 REMARK 3 S31: -1.5149 S32: -0.1248 S33: -0.2157 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 59 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.2162 10.1204 50.5219 REMARK 3 T TENSOR REMARK 3 T11: 1.5975 T22: 0.7882 REMARK 3 T33: 1.0698 T12: 0.0302 REMARK 3 T13: -0.7093 T23: 0.5049 REMARK 3 L TENSOR REMARK 3 L11: 3.8797 L22: 4.8353 REMARK 3 L33: 7.8780 L12: -1.2162 REMARK 3 L13: 0.0511 L23: -3.9161 REMARK 3 S TENSOR REMARK 3 S11: 0.2645 S12: 0.5924 S13: 0.1969 REMARK 3 S21: -0.5178 S22: -0.2886 S23: 0.1887 REMARK 3 S31: 0.3195 S32: -0.0605 S33: -0.1963 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 114 THROUGH 132 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.4656 15.5360 49.7911 REMARK 3 T TENSOR REMARK 3 T11: 1.2950 T22: 1.1151 REMARK 3 T33: 1.5280 T12: 0.1170 REMARK 3 T13: -0.4806 T23: 0.2415 REMARK 3 L TENSOR REMARK 3 L11: 8.3189 L22: 0.1573 REMARK 3 L33: 8.4626 L12: -0.6371 REMARK 3 L13: 5.6774 L23: 0.2851 REMARK 3 S TENSOR REMARK 3 S11: 0.4216 S12: -0.1080 S13: 2.0091 REMARK 3 S21: -1.5180 S22: -0.3069 S23: 0.6692 REMARK 3 S31: -1.3770 S32: -2.4739 S33: 0.4322 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 133 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.3022 19.6234 63.8914 REMARK 3 T TENSOR REMARK 3 T11: 2.4723 T22: 0.9415 REMARK 3 T33: 2.3045 T12: -0.0883 REMARK 3 T13: -0.4849 T23: -0.2450 REMARK 3 L TENSOR REMARK 3 L11: 3.2500 L22: 4.7208 REMARK 3 L33: 0.8211 L12: -3.6520 REMARK 3 L13: -0.1422 L23: -0.4264 REMARK 3 S TENSOR REMARK 3 S11: 1.8395 S12: -0.8012 S13: 4.2426 REMARK 3 S21: -2.1289 S22: -0.9344 S23: 1.0153 REMARK 3 S31: -0.2749 S32: -0.1452 S33: -0.8965 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 146 THROUGH 172 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.0104 6.4826 52.9416 REMARK 3 T TENSOR REMARK 3 T11: 1.3484 T22: 0.6555 REMARK 3 T33: 1.0596 T12: -0.3656 REMARK 3 T13: -0.8047 T23: 1.1446 REMARK 3 L TENSOR REMARK 3 L11: 0.4816 L22: 2.3972 REMARK 3 L33: 0.2561 L12: -0.2603 REMARK 3 L13: -0.0349 L23: -0.1980 REMARK 3 S TENSOR REMARK 3 S11: 0.0934 S12: 0.1023 S13: 0.2035 REMARK 3 S21: -0.3233 S22: -0.2530 S23: -0.2595 REMARK 3 S31: -0.1533 S32: 0.3239 S33: 0.8075 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 173 THROUGH 208 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.8927 -4.2803 60.6134 REMARK 3 T TENSOR REMARK 3 T11: 1.2736 T22: 0.8945 REMARK 3 T33: 0.7047 T12: -0.1724 REMARK 3 T13: -0.6559 T23: 0.4173 REMARK 3 L TENSOR REMARK 3 L11: 1.6367 L22: 2.1045 REMARK 3 L33: 3.6947 L12: -1.3555 REMARK 3 L13: -1.3701 L23: -0.4483 REMARK 3 S TENSOR REMARK 3 S11: 0.5492 S12: 0.1365 S13: 0.0897 REMARK 3 S21: -0.0982 S22: -0.2828 S23: -0.3221 REMARK 3 S31: 0.1314 S32: 0.7663 S33: 1.3373 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 209 THROUGH 247 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.0569 -2.9901 55.6173 REMARK 3 T TENSOR REMARK 3 T11: 1.0661 T22: 1.1747 REMARK 3 T33: 0.6115 T12: -0.1555 REMARK 3 T13: -0.2924 T23: 0.2642 REMARK 3 L TENSOR REMARK 3 L11: 5.9906 L22: 7.5672 REMARK 3 L33: 4.2287 L12: -5.5534 REMARK 3 L13: 1.4759 L23: -1.2578 REMARK 3 S TENSOR REMARK 3 S11: 0.8797 S12: -0.4042 S13: -0.3603 REMARK 3 S21: -0.3309 S22: -0.1640 S23: 0.1003 REMARK 3 S31: 0.6646 S32: 0.6218 S33: -0.4271 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9YZJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-NOV-25. REMARK 100 THE DEPOSITION ID IS D_1000299292. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUN-25 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24810 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.970 REMARK 200 RESOLUTION RANGE LOW (A) : 46.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 1.10200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: PARALLELEPIPED REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 80.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30 MM MAGNESIUM ACETATE, 1.7 M LITHIUM REMARK 280 SULFATE, 50 MM MES PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 36.60448 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 66.32300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 63.38335 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 36.60448 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 66.32300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 63.38335 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C -11 REMARK 465 ARG C -10 REMARK 465 GLY C -9 REMARK 465 SER C -8 REMARK 465 HIS C -7 REMARK 465 HIS C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 GLU C 3 REMARK 465 THR C 4 REMARK 465 ALA C 5 REMARK 465 VAL C 6 REMARK 465 ILE C 7 REMARK 465 ASN C 8 REMARK 465 HIS C 9 REMARK 465 LYS C 10 REMARK 465 ASP C 50 REMARK 465 GLY C 51 REMARK 465 THR C 52 REMARK 465 LEU C 53 REMARK 465 GLN C 54 REMARK 465 GLU C 55 REMARK 465 PRO C 99 REMARK 465 GLU C 100 REMARK 465 GLU C 101 REMARK 465 ASP C 102 REMARK 465 ALA C 103 REMARK 465 GLY C 104 REMARK 465 ASP C 105 REMARK 465 GLU C 106 REMARK 465 LYS C 107 REMARK 465 GLY C 108 REMARK 465 MET C 248 REMARK 465 THR C 249 REMARK 465 THR C 250 REMARK 465 GLY C 251 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS C 11 CG CD CE NZ REMARK 470 ARG C 12 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 13 CG CD CE NZ REMARK 470 ARG C 17 CG CD NE CZ NH1 NH2 REMARK 470 ILE C 18 CG1 CG2 CD1 REMARK 470 GLN C 20 CG CD OE1 NE2 REMARK 470 SER C 30 OG REMARK 470 LEU C 31 CG CD1 CD2 REMARK 470 GLN C 35 CD OE1 NE2 REMARK 470 LYS C 36 CG CD CE NZ REMARK 470 MET C 38 CG SD CE REMARK 470 LEU C 41 CG CD1 CD2 REMARK 470 PHE C 42 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP C 44 CG OD1 OD2 REMARK 470 ILE C 46 CG1 CG2 CD1 REMARK 470 ARG C 47 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 48 CG CD CE NZ REMARK 470 SER C 49 OG REMARK 470 GLU C 61 CG CD OE1 OE2 REMARK 470 ILE C 62 CG1 CG2 CD1 REMARK 470 LYS C 66 CG CD CE NZ REMARK 470 LYS C 80 CG CD CE NZ REMARK 470 ILE C 82 CG1 CG2 CD1 REMARK 470 LEU C 86 CG CD1 CD2 REMARK 470 LYS C 87 CD CE NZ REMARK 470 LYS C 92 CG CD CE NZ REMARK 470 GLU C 93 CG CD OE1 OE2 REMARK 470 TYR C 109 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS C 117 CG CD CE NZ REMARK 470 SER C 123 OG REMARK 470 HIS C 130 CG ND1 CD2 CE1 NE2 REMARK 470 LEU C 135 CG CD1 CD2 REMARK 470 GLN C 143 CG CD OE1 NE2 REMARK 470 ASN C 144 CG OD1 ND2 REMARK 470 ARG C 145 CD NE CZ NH1 NH2 REMARK 470 PHE C 146 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN C 148 CG CD OE1 NE2 REMARK 470 ARG C 150 CG CD NE CZ NH1 NH2 REMARK 470 LEU C 151 CG CD1 CD2 REMARK 470 LYS C 155 CG CD CE NZ REMARK 470 GLU C 156 CG CD OE1 OE2 REMARK 470 ARG C 164 NE CZ NH1 NH2 REMARK 470 LYS C 174 CG CD CE NZ REMARK 470 ASP C 176 CG OD1 OD2 REMARK 470 SER C 178 OG REMARK 470 LEU C 183 CG CD1 CD2 REMARK 470 LYS C 184 CG CD CE NZ REMARK 470 ASP C 186 CG OD1 OD2 REMARK 470 GLU C 190 CD OE1 OE2 REMARK 470 ARG C 191 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 196 CG CD OE1 NE2 REMARK 470 ARG C 205 CG CD NE CZ NH1 NH2 REMARK 470 LEU C 209 CG CD1 CD2 REMARK 470 ASN C 214 CG OD1 ND2 REMARK 470 ARG C 219 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 223 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 230 CG CD CE NZ REMARK 470 LYS C 231 CG CD CE NZ REMARK 470 ARG C 233 CG CD NE CZ NH1 NH2 REMARK 470 VAL C 239 CG1 CG2 REMARK 470 ARG C 243 CG CD NE CZ NH1 NH2 REMARK 470 ILE C 245 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS C 48 27.18 -72.12 REMARK 500 TYR C 97 -165.45 -119.55 REMARK 500 ARG C 145 75.70 -114.56 REMARK 500 PHE C 208 -67.07 -106.69 REMARK 500 THR C 246 0.04 -66.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 77 OE2 REMARK 620 2 ASP C 81 OD1 85.0 REMARK 620 3 ASP C 81 OD2 70.4 47.3 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9YZA RELATED DB: PDB REMARK 900 RELATED ID: 9YZB RELATED DB: PDB REMARK 900 RELATED ID: 9YZC RELATED DB: PDB REMARK 900 RELATED ID: 9YZD RELATED DB: PDB REMARK 900 RELATED ID: 9YZE RELATED DB: PDB REMARK 900 RELATED ID: 9YZF RELATED DB: PDB REMARK 900 RELATED ID: 9YZG RELATED DB: PDB REMARK 900 RELATED ID: 9YZI RELATED DB: PDB DBREF 9YZJ A 1 31 PDB 9YZJ 9YZJ 1 31 DBREF 9YZJ B 13 43 PDB 9YZJ 9YZJ 13 43 DBREF 9YZJ C 1 251 UNP P03856 REPE1_ECOLI 1 251 SEQADV 9YZJ MET C -11 UNP P03856 INITIATING METHIONINE SEQADV 9YZJ ARG C -10 UNP P03856 EXPRESSION TAG SEQADV 9YZJ GLY C -9 UNP P03856 EXPRESSION TAG SEQADV 9YZJ SER C -8 UNP P03856 EXPRESSION TAG SEQADV 9YZJ HIS C -7 UNP P03856 EXPRESSION TAG SEQADV 9YZJ HIS C -6 UNP P03856 EXPRESSION TAG SEQADV 9YZJ HIS C -5 UNP P03856 EXPRESSION TAG SEQADV 9YZJ HIS C -4 UNP P03856 EXPRESSION TAG SEQADV 9YZJ HIS C -3 UNP P03856 EXPRESSION TAG SEQADV 9YZJ HIS C -2 UNP P03856 EXPRESSION TAG SEQADV 9YZJ GLY C -1 UNP P03856 EXPRESSION TAG SEQADV 9YZJ SER C 0 UNP P03856 EXPRESSION TAG SEQADV 9YZJ PRO C 118 UNP P03856 ARG 118 CONFLICT SEQRES 1 A 31 DC DC DT DG DT DG DA DC DA DA DA DT DT SEQRES 2 A 31 DG DC DC DC DT DC DA DG DC DG DT DA DA SEQRES 3 A 31 DT DT DA DG DG SEQRES 1 B 31 DC DC DT DA DA DT DT DA DC DG DC DT DG SEQRES 2 B 31 DA DG DG DG DC DA DA DT DT DT DG DT DC SEQRES 3 B 31 DA DC DA DG DG SEQRES 1 C 263 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 C 263 ALA GLU THR ALA VAL ILE ASN HIS LYS LYS ARG LYS ASN SEQRES 3 C 263 SER PRO ARG ILE VAL GLN SER ASN ASP LEU THR GLU ALA SEQRES 4 C 263 ALA TYR SER LEU SER ARG ASP GLN LYS ARG MET LEU TYR SEQRES 5 C 263 LEU PHE VAL ASP GLN ILE ARG LYS SER ASP GLY THR LEU SEQRES 6 C 263 GLN GLU HIS ASP GLY ILE CYS GLU ILE HIS VAL ALA LYS SEQRES 7 C 263 TYR ALA GLU ILE PHE GLY LEU THR SER ALA GLU ALA SER SEQRES 8 C 263 LYS ASP ILE ARG GLN ALA LEU LYS SER PHE ALA GLY LYS SEQRES 9 C 263 GLU VAL VAL PHE TYR ARG PRO GLU GLU ASP ALA GLY ASP SEQRES 10 C 263 GLU LYS GLY TYR GLU SER PHE PRO TRP PHE ILE LYS PRO SEQRES 11 C 263 ALA HIS SER PRO SER ARG GLY LEU TYR SER VAL HIS ILE SEQRES 12 C 263 ASN PRO TYR LEU ILE PRO PHE PHE ILE GLY LEU GLN ASN SEQRES 13 C 263 ARG PHE THR GLN PHE ARG LEU SER GLU THR LYS GLU ILE SEQRES 14 C 263 THR ASN PRO TYR ALA MET ARG LEU TYR GLU SER LEU CYS SEQRES 15 C 263 GLN TYR ARG LYS PRO ASP GLY SER GLY ILE VAL SER LEU SEQRES 16 C 263 LYS ILE ASP TRP ILE ILE GLU ARG TYR GLN LEU PRO GLN SEQRES 17 C 263 SER TYR GLN ARG MET PRO ASP PHE ARG ARG ARG PHE LEU SEQRES 18 C 263 GLN VAL CYS VAL ASN GLU ILE ASN SER ARG THR PRO MET SEQRES 19 C 263 ARG LEU SER TYR ILE GLU LYS LYS LYS GLY ARG GLN THR SEQRES 20 C 263 THR HIS ILE VAL PHE SER PHE ARG ASP ILE THR SER MET SEQRES 21 C 263 THR THR GLY HET MG A 101 1 HET MG A 102 1 HET MG B 101 1 HET MG C 301 1 HETNAM MG MAGNESIUM ION FORMUL 4 MG 4(MG 2+) HELIX 1 AA1 ASN C 22 GLU C 26 1 5 HELIX 2 AA2 SER C 32 LYS C 48 1 17 HELIX 3 AA3 VAL C 64 GLY C 72 1 9 HELIX 4 AA4 THR C 74 PHE C 89 1 16 HELIX 5 AA5 ASN C 132 TYR C 134 5 3 HELIX 6 AA6 LEU C 135 GLY C 141 1 7 HELIX 7 AA7 LEU C 151 LYS C 155 1 5 HELIX 8 AA8 ASN C 159 TYR C 172 1 14 HELIX 9 AA9 ILE C 185 TYR C 192 1 8 HELIX 10 AB1 PRO C 195 GLN C 199 5 5 HELIX 11 AB2 ARG C 200 PHE C 208 1 9 HELIX 12 AB3 PHE C 208 THR C 220 1 13 SHEET 1 AA1 2 ARG C 17 SER C 21 0 SHEET 2 AA1 2 PHE C 146 ARG C 150 -1 O THR C 147 N GLN C 20 SHEET 1 AA2 3 ILE C 59 HIS C 63 0 SHEET 2 AA2 3 LEU C 126 HIS C 130 -1 O VAL C 129 N CYS C 60 SHEET 3 AA2 3 HIS C 120 SER C 123 -1 N HIS C 120 O SER C 128 SHEET 1 AA3 2 GLU C 93 PHE C 96 0 SHEET 2 AA3 2 GLU C 110 PRO C 113 -1 O GLU C 110 N PHE C 96 SHEET 1 AA4 3 GLY C 179 LYS C 184 0 SHEET 2 AA4 3 GLN C 234 ASP C 244 -1 O ILE C 238 N LEU C 183 SHEET 3 AA4 3 MET C 222 LYS C 231 -1 N LYS C 229 O HIS C 237 LINK O5' DC A 1 MG MG A 101 1555 1555 2.05 LINK OE2 GLU C 77 MG MG C 301 1555 1555 2.42 LINK OD1 ASP C 81 MG MG C 301 1555 1555 2.12 LINK OD2 ASP C 81 MG MG C 301 1555 1555 3.00 CRYST1 73.782 132.646 126.768 90.00 90.26 90.00 I 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013553 0.000000 0.000061 0.00000 SCALE2 0.000000 0.007539 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007889 0.00000 CONECT 1 2896 CONECT 1692 2899 CONECT 1715 2899 CONECT 1716 2899 CONECT 2896 1 CONECT 2899 1692 1715 1716 MASTER 609 0 4 12 10 0 0 6 2876 3 6 27 END