HEADER DNA BINDING PROTEIN/DNA 30-OCT-25 9YZU TITLE ISORETICULAR CO-CRYSTAL 1 WITH ASYMMETRICAL EXPANDED DUPLEX (31MER) TITLE 2 CONTAINING INSERT SEQUENCE ATGAGTCATA AND LOADED WITH MUTATED BZIP TITLE 3 REGION OF GCN4 TRANSCRIPTION FACTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (31-MER); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (31-MER); COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: REPLICATION INITIATION PROTEIN; COMPND 11 CHAIN: C; COMPND 12 SYNONYM: PROTEIN E,PROTEIN REP,PROTEIN F4, REPLICATION INITIATOR COMPND 13 PROTEIN REPE54; COMPND 14 ENGINEERED: YES; COMPND 15 OTHER_DETAILS: REPLICATION INITIATOR PROTEIN REPE54 WITH N-TERMINAL COMPND 16 SOLUBILITY TAG AND N-TERMINAL 6XHIS TAG; COMPND 17 MOL_ID: 4; COMPND 18 MOLECULE: GENERAL CONTROL TRANSCRIPTION FACTOR GCN4; COMPND 19 CHAIN: F, D, E; COMPND 20 SYNONYM: AMINO ACID BIOSYNTHESIS REGULATORY PROTEIN,GENERAL CONTROL COMPND 21 PROTEIN GCN4; COMPND 22 ENGINEERED: YES; COMPND 23 OTHER_DETAILS: BZIP REGION OF GCN4 TRANSCRIPTION FACTOR SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 4 ORGANISM_TAXID: 562; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 8 ORGANISM_TAXID: 562; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 11 ORGANISM_TAXID: 562; SOURCE 12 GENE: REPE, E, REP, ECOK12F045; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 15 MOL_ID: 4; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 18 ORGANISM_COMMON: BREWER'S YEAST; SOURCE 19 ORGANISM_TAXID: 4932 KEYWDS PROTEIN-DNA COMPLEX, DNA BINDING PROTEIN, TRANSCRIPTION FACTOR, DNA KEYWDS 2 BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.T.SHIELDS,C.K.SLAUGHTER,E.N.MAGNA,C.D.SNOW REVDAT 1 18-FEB-26 9YZU 0 JRNL AUTH E.T.SHIELDS,C.K.SLAUGHTER,F.MEKKAOUI,E.N.MAGNA,C.SHEPHERD, JRNL AUTH 2 P.S.LUKEMAN,D.E.SPRATT,C.D.SNOW JRNL TITL MODULAR SCAFFOLD CRYSTALS FOR PROGRAMMABLE INSTALLATION AND JRNL TITL 2 STRUCTURAL OBSERVATION OF DNA-BINDING PROTEINS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.2_5419 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 23071 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.690 REMARK 3 FREE R VALUE TEST SET COUNT : 2235 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 63.7100 - 7.6800 0.93 1262 147 0.1644 0.1884 REMARK 3 2 7.6800 - 6.1000 1.00 1339 145 0.2120 0.2354 REMARK 3 3 6.1000 - 5.3300 1.00 1331 147 0.2028 0.2259 REMARK 3 4 5.3300 - 4.8400 1.00 1317 156 0.2062 0.2579 REMARK 3 5 4.8400 - 4.4900 0.95 1277 117 0.1918 0.1573 REMARK 3 6 4.4900 - 4.2300 0.99 1324 152 0.2024 0.2382 REMARK 3 7 4.2300 - 4.0200 0.99 1289 153 0.2072 0.2064 REMARK 3 8 4.0200 - 3.8400 0.99 1316 130 0.2352 0.2778 REMARK 3 9 3.8400 - 3.6900 1.00 1323 150 0.2565 0.2917 REMARK 3 10 3.6900 - 3.5700 1.00 1326 141 0.2868 0.3202 REMARK 3 11 3.5700 - 3.4600 0.99 1292 142 0.2765 0.3295 REMARK 3 12 3.4600 - 3.3600 0.98 1340 118 0.3048 0.2897 REMARK 3 13 3.3600 - 3.2700 0.97 1280 150 0.3248 0.3630 REMARK 3 14 3.2700 - 3.1900 0.93 1226 116 0.3537 0.4492 REMARK 3 15 3.1900 - 3.1200 0.95 1241 153 0.3716 0.3887 REMARK 3 16 3.1200 - 3.0500 1.00 1353 118 0.3769 0.3390 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.413 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 85.24 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 124.1 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3641 REMARK 3 ANGLE : 0.714 5139 REMARK 3 CHIRALITY : 0.062 577 REMARK 3 PLANARITY : 0.005 455 REMARK 3 DIHEDRAL : 23.910 1500 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.6815 -3.7812 16.4305 REMARK 3 T TENSOR REMARK 3 T11: 1.0136 T22: 1.3483 REMARK 3 T33: 2.1043 T12: 0.3401 REMARK 3 T13: 0.1905 T23: 0.2317 REMARK 3 L TENSOR REMARK 3 L11: 1.5191 L22: 3.0084 REMARK 3 L33: 1.4982 L12: -1.8981 REMARK 3 L13: -0.1965 L23: 1.2362 REMARK 3 S TENSOR REMARK 3 S11: -0.4807 S12: 0.3500 S13: -1.0077 REMARK 3 S21: 0.7562 S22: -0.1435 S23: 1.1016 REMARK 3 S31: 0.0263 S32: -0.5582 S33: 0.5044 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 26 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.9325 28.2392 16.3369 REMARK 3 T TENSOR REMARK 3 T11: 1.7829 T22: 1.7719 REMARK 3 T33: 2.1674 T12: 1.0119 REMARK 3 T13: -0.1555 T23: 0.0585 REMARK 3 L TENSOR REMARK 3 L11: 2.6211 L22: 6.7494 REMARK 3 L33: 0.3761 L12: -1.8501 REMARK 3 L13: -0.7126 L23: -0.4924 REMARK 3 S TENSOR REMARK 3 S11: 0.2599 S12: 0.8563 S13: -2.1771 REMARK 3 S21: 0.4814 S22: 0.0790 S23: 2.4125 REMARK 3 S31: 0.5636 S32: 0.1200 S33: 1.1983 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 12 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.8729 35.6019 12.1572 REMARK 3 T TENSOR REMARK 3 T11: 1.5397 T22: 1.7927 REMARK 3 T33: 1.9281 T12: 0.8588 REMARK 3 T13: -0.1788 T23: -0.1068 REMARK 3 L TENSOR REMARK 3 L11: 4.3758 L22: 2.9728 REMARK 3 L33: 4.5957 L12: -1.9853 REMARK 3 L13: 1.7528 L23: -3.3198 REMARK 3 S TENSOR REMARK 3 S11: -0.9693 S12: 0.7360 S13: -1.7123 REMARK 3 S21: 0.6955 S22: 0.0637 S23: 1.1390 REMARK 3 S31: -1.0499 S32: -0.7244 S33: 0.1591 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 17 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.6934 20.6722 19.2043 REMARK 3 T TENSOR REMARK 3 T11: 1.3234 T22: 1.6258 REMARK 3 T33: 2.8188 T12: 0.6615 REMARK 3 T13: 0.0558 T23: 0.1141 REMARK 3 L TENSOR REMARK 3 L11: 3.3497 L22: 8.4365 REMARK 3 L33: 8.3418 L12: -4.7383 REMARK 3 L13: 2.5444 L23: -1.7192 REMARK 3 S TENSOR REMARK 3 S11: -0.6141 S12: 0.2464 S13: -1.7075 REMARK 3 S21: 1.4429 S22: 0.8260 S23: 1.2734 REMARK 3 S31: 0.0874 S32: 0.1125 S33: 0.0720 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 22 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.9105 13.1323 16.0378 REMARK 3 T TENSOR REMARK 3 T11: 1.1031 T22: 1.7454 REMARK 3 T33: 2.1558 T12: 0.7641 REMARK 3 T13: 0.1117 T23: 0.2386 REMARK 3 L TENSOR REMARK 3 L11: 6.1046 L22: 4.0965 REMARK 3 L33: 4.4735 L12: -2.1371 REMARK 3 L13: -0.3818 L23: -1.2450 REMARK 3 S TENSOR REMARK 3 S11: 0.6886 S12: 0.8964 S13: -0.4009 REMARK 3 S21: -0.6956 S22: -0.3044 S23: 1.4906 REMARK 3 S31: 0.0244 S32: -0.3556 S33: 0.1417 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 27 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.5265 -13.4322 17.3914 REMARK 3 T TENSOR REMARK 3 T11: 1.0524 T22: 0.9374 REMARK 3 T33: 2.1009 T12: 0.2531 REMARK 3 T13: 0.2476 T23: 0.2999 REMARK 3 L TENSOR REMARK 3 L11: 0.3740 L22: 3.3905 REMARK 3 L33: 6.4513 L12: 1.0177 REMARK 3 L13: -0.3181 L23: 1.1055 REMARK 3 S TENSOR REMARK 3 S11: -0.7409 S12: -0.1309 S13: -2.2976 REMARK 3 S21: 0.7046 S22: 0.4873 S23: 2.2156 REMARK 3 S31: 0.1295 S32: -0.6102 S33: 0.1873 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 14 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.5980 13.1251 15.5358 REMARK 3 T TENSOR REMARK 3 T11: 0.9545 T22: 0.6393 REMARK 3 T33: 0.8672 T12: 0.2677 REMARK 3 T13: 0.0367 T23: 0.2000 REMARK 3 L TENSOR REMARK 3 L11: 6.5888 L22: 5.6819 REMARK 3 L33: 5.3287 L12: -2.1019 REMARK 3 L13: -0.6761 L23: 0.9027 REMARK 3 S TENSOR REMARK 3 S11: 0.1102 S12: 0.5987 S13: 0.9440 REMARK 3 S21: -0.4468 S22: 0.0644 S23: 0.9189 REMARK 3 S31: -1.0847 S32: -0.4127 S33: -0.1645 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 90 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 65.7714 9.5175 26.6304 REMARK 3 T TENSOR REMARK 3 T11: 1.0643 T22: 0.9269 REMARK 3 T33: 1.1491 T12: 0.1972 REMARK 3 T13: 0.0307 T23: 0.0141 REMARK 3 L TENSOR REMARK 3 L11: 6.6159 L22: 3.7038 REMARK 3 L33: 9.2169 L12: 4.8431 REMARK 3 L13: 4.3699 L23: 2.1954 REMARK 3 S TENSOR REMARK 3 S11: 1.4452 S12: 0.1052 S13: -1.6254 REMARK 3 S21: 1.3505 S22: -0.5117 S23: -1.2241 REMARK 3 S31: 0.2011 S32: 1.4505 S33: -0.9979 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 114 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.7684 18.0392 23.6858 REMARK 3 T TENSOR REMARK 3 T11: 1.1844 T22: 0.4677 REMARK 3 T33: 1.0370 T12: 0.1364 REMARK 3 T13: 0.1622 T23: 0.1232 REMARK 3 L TENSOR REMARK 3 L11: 9.4169 L22: 4.5144 REMARK 3 L33: 6.1760 L12: 0.4434 REMARK 3 L13: 1.2395 L23: 1.6455 REMARK 3 S TENSOR REMARK 3 S11: 0.3178 S12: -0.9643 S13: 1.7054 REMARK 3 S21: 0.1746 S22: 0.0387 S23: 0.9358 REMARK 3 S31: -1.6309 S32: -0.0117 S33: -0.4983 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 146 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): 65.0402 -0.9158 7.4596 REMARK 3 T TENSOR REMARK 3 T11: 0.6909 T22: 0.7231 REMARK 3 T33: 0.6921 T12: 0.1378 REMARK 3 T13: -0.0262 T23: 0.1678 REMARK 3 L TENSOR REMARK 3 L11: 9.1049 L22: 5.0988 REMARK 3 L33: 4.6572 L12: -0.2475 REMARK 3 L13: -3.0985 L23: 2.2998 REMARK 3 S TENSOR REMARK 3 S11: 0.1456 S12: 0.4404 S13: -0.3068 REMARK 3 S21: -0.3233 S22: -0.1556 S23: 0.3054 REMARK 3 S31: -0.5612 S32: 0.2175 S33: 0.0351 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 3 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 70.1774 -24.6844 26.2955 REMARK 3 T TENSOR REMARK 3 T11: 1.8572 T22: 3.2961 REMARK 3 T33: 1.7921 T12: 1.0068 REMARK 3 T13: -0.2659 T23: 0.3234 REMARK 3 L TENSOR REMARK 3 L11: 2.1435 L22: 1.1561 REMARK 3 L33: 6.5513 L12: 1.5557 REMARK 3 L13: 3.6095 L23: 2.7036 REMARK 3 S TENSOR REMARK 3 S11: 0.9753 S12: -1.2619 S13: -2.2531 REMARK 3 S21: 1.2099 S22: 0.6453 S23: -1.3396 REMARK 3 S31: 2.5460 S32: 1.6321 S33: -1.6027 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.4233 23.1695 25.6098 REMARK 3 T TENSOR REMARK 3 T11: 1.7725 T22: 1.7802 REMARK 3 T33: 1.8484 T12: 0.5113 REMARK 3 T13: -0.0616 T23: -0.0183 REMARK 3 L TENSOR REMARK 3 L11: 2.7407 L22: 6.7583 REMARK 3 L33: 3.9541 L12: -2.9993 REMARK 3 L13: 0.4814 L23: 3.0441 REMARK 3 S TENSOR REMARK 3 S11: -0.3732 S12: -1.0130 S13: -0.3505 REMARK 3 S21: 0.8072 S22: 0.1033 S23: 1.0431 REMARK 3 S31: 0.8815 S32: 0.8401 S33: 0.2371 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 1 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.2723 30.7413 7.1857 REMARK 3 T TENSOR REMARK 3 T11: 1.1008 T22: 2.0306 REMARK 3 T33: 0.8656 T12: 0.8741 REMARK 3 T13: 0.0513 T23: -0.1054 REMARK 3 L TENSOR REMARK 3 L11: 6.5852 L22: 9.5308 REMARK 3 L33: 5.8403 L12: 5.6912 REMARK 3 L13: 3.2162 L23: 2.3516 REMARK 3 S TENSOR REMARK 3 S11: -0.6011 S12: 1.3589 S13: -1.0852 REMARK 3 S21: -1.1101 S22: 0.5360 S23: -0.9941 REMARK 3 S31: -0.9649 S32: -0.6160 S33: -0.1120 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9YZU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-OCT-25. REMARK 100 THE DEPOSITION ID IS D_1000299423. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-25 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23188 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.050 REMARK 200 RESOLUTION RANGE LOW (A) : 92.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 1.06000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: PARALLELEPIPED REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 76.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM MAGNESIUM ACETATE, 1.8M LITHIUM REMARK 280 SULFATE, 50MM MES PH 6.5. THE CRYSTAL WAS CROSSLINKED WITH 50MG/ REMARK 280 ML EDC OVERNIGHT, AND THEN LOOPED INTO A SOLUTION OF 50MM REMARK 280 POTASSIUM CHLORIDE, 4MM CALCIUM CHLORIDE, 10% GLYCEROL, AND 10MM REMARK 280 TRIS HYDROCHLORIDE FOR 1 HOUR. THE DROP WAS THEN SUPPLEMENTED REMARK 280 WITH 33 MICROMOLAR BZIP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 76.14100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 63.59300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 76.14100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 63.59300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, F, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C -11 REMARK 465 ARG C -10 REMARK 465 GLY C -9 REMARK 465 SER C -8 REMARK 465 HIS C -7 REMARK 465 HIS C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 GLU C 3 REMARK 465 THR C 4 REMARK 465 ALA C 5 REMARK 465 VAL C 6 REMARK 465 ILE C 7 REMARK 465 ASN C 8 REMARK 465 HIS C 9 REMARK 465 LYS C 10 REMARK 465 LYS C 11 REMARK 465 ARG C 12 REMARK 465 LYS C 13 REMARK 465 ASP C 50 REMARK 465 GLY C 51 REMARK 465 THR C 52 REMARK 465 LEU C 53 REMARK 465 GLN C 54 REMARK 465 GLU C 55 REMARK 465 HIS C 56 REMARK 465 ARG C 98 REMARK 465 PRO C 99 REMARK 465 GLU C 100 REMARK 465 GLU C 101 REMARK 465 ASP C 102 REMARK 465 ALA C 103 REMARK 465 GLY C 104 REMARK 465 ASP C 105 REMARK 465 GLU C 106 REMARK 465 LYS C 107 REMARK 465 GLY C 108 REMARK 465 THR C 246 REMARK 465 SER C 247 REMARK 465 MET C 248 REMARK 465 THR C 249 REMARK 465 THR C 250 REMARK 465 GLY C 251 REMARK 465 ASP F 1 REMARK 465 PRO F 2 REMARK 465 SER F 17 REMARK 465 ARG F 18 REMARK 465 ALA F 19 REMARK 465 ARG F 20 REMARK 465 LYS F 21 REMARK 465 LEU F 22 REMARK 465 GLN F 23 REMARK 465 ARG F 24 REMARK 465 MET F 25 REMARK 465 LYS F 26 REMARK 465 LYS F 27 REMARK 465 GLN F 28 REMARK 465 CYS F 29 REMARK 465 LYS D 26 REMARK 465 LYS D 27 REMARK 465 GLN D 28 REMARK 465 CYS D 29 REMARK 465 LYS E 26 REMARK 465 LYS E 27 REMARK 465 GLN E 28 REMARK 465 CYS E 29 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN C 14 CG OD1 ND2 REMARK 470 SER C 30 OG REMARK 470 GLU C 77 CG CD OE1 OE2 REMARK 470 LYS C 87 CG CD CE NZ REMARK 470 VAL C 94 CG1 CG2 REMARK 470 LYS C 117 CG CD CE NZ REMARK 470 ILE C 140 CG1 CG2 CD1 REMARK 470 LEU C 142 CG CD1 CD2 REMARK 470 GLN C 143 CG CD OE1 NE2 REMARK 470 ASN C 144 CG OD1 ND2 REMARK 470 ARG C 145 CG CD NE CZ NH1 NH2 REMARK 470 PHE C 146 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN C 148 CG CD OE1 NE2 REMARK 470 LYS C 174 NZ REMARK 470 ARG C 243 CG CD NE CZ NH1 NH2 REMARK 470 LEU F 5 CG CD1 CD2 REMARK 470 LYS F 6 CG CD CE NZ REMARK 470 ARG F 7 CG CD NE CZ NH1 NH2 REMARK 470 ARG F 9 CG CD NE CZ NH1 NH2 REMARK 470 ARG F 15 CG CD NE CZ NH1 NH2 REMARK 470 ARG F 16 CG CD NE CZ NH1 NH2 REMARK 470 LEU D 5 CG CD1 CD2 REMARK 470 LYS D 6 CG CD CE NZ REMARK 470 ARG D 7 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 9 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 21 CG CD CE NZ REMARK 470 LEU D 22 CG CD1 CD2 REMARK 470 GLN D 23 CG CD OE1 NE2 REMARK 470 ARG D 24 CG CD NE CZ NH1 NH2 REMARK 470 MET D 25 CG SD CE REMARK 470 LYS E 6 CG CD CE NZ REMARK 470 ARG E 7 NE CZ NH1 NH2 REMARK 470 ARG E 9 CG CD NE CZ NH1 NH2 REMARK 470 LYS E 21 CG CD CE NZ REMARK 470 ARG E 24 CG CD NE CZ NH1 NH2 REMARK 470 MET E 25 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU C 142 -125.24 -76.93 REMARK 500 ARG C 145 75.31 -114.68 REMARK 500 PHE C 208 -66.87 -106.83 REMARK 500 ARG F 15 -72.87 -135.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DT A 12 O2 REMARK 620 2 DT B 33 O2 76.6 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9YZA RELATED DB: PDB REMARK 900 RELATED ID: 9YZB RELATED DB: PDB REMARK 900 RELATED ID: 9YZC RELATED DB: PDB REMARK 900 RELATED ID: 9YZD RELATED DB: PDB REMARK 900 RELATED ID: 9YZE RELATED DB: PDB REMARK 900 RELATED ID: 9YZF RELATED DB: PDB REMARK 900 RELATED ID: 9YZG RELATED DB: PDB REMARK 900 RELATED ID: 9YZI RELATED DB: PDB REMARK 900 RELATED ID: 9YZJ RELATED DB: PDB REMARK 900 RELATED ID: 9YZK RELATED DB: PDB REMARK 900 RELATED ID: 9YZL RELATED DB: PDB REMARK 900 RELATED ID: 9YZM RELATED DB: PDB REMARK 900 RELATED ID: 9YZN RELATED DB: PDB REMARK 900 RELATED ID: 9YZO RELATED DB: PDB REMARK 900 RELATED ID: 9YZP RELATED DB: PDB REMARK 900 RELATED ID: 9YZQ RELATED DB: PDB REMARK 900 RELATED ID: 9YZR RELATED DB: PDB REMARK 900 RELATED ID: 9YZS RELATED DB: PDB REMARK 900 RELATED ID: 9YZT RELATED DB: PDB DBREF 9YZU A 1 31 PDB 9YZU 9YZU 1 31 DBREF 9YZU B 12 42 PDB 9YZU 9YZU 12 42 DBREF 9YZU C 1 251 UNP P03856 REPE1_ECOLI 1 251 DBREF 9YZU F 1 26 UNP P03069 GCN4_YEAST 226 251 DBREF 9YZU D 1 26 UNP P03069 GCN4_YEAST 226 251 DBREF 9YZU E 1 26 UNP P03069 GCN4_YEAST 226 251 SEQADV 9YZU MET C -11 UNP P03856 INITIATING METHIONINE SEQADV 9YZU ARG C -10 UNP P03856 EXPRESSION TAG SEQADV 9YZU GLY C -9 UNP P03856 EXPRESSION TAG SEQADV 9YZU SER C -8 UNP P03856 EXPRESSION TAG SEQADV 9YZU HIS C -7 UNP P03856 EXPRESSION TAG SEQADV 9YZU HIS C -6 UNP P03856 EXPRESSION TAG SEQADV 9YZU HIS C -5 UNP P03856 EXPRESSION TAG SEQADV 9YZU HIS C -4 UNP P03856 EXPRESSION TAG SEQADV 9YZU HIS C -3 UNP P03856 EXPRESSION TAG SEQADV 9YZU HIS C -2 UNP P03856 EXPRESSION TAG SEQADV 9YZU GLY C -1 UNP P03856 EXPRESSION TAG SEQADV 9YZU SER C 0 UNP P03856 EXPRESSION TAG SEQADV 9YZU PRO C 118 UNP P03856 ARG 118 CONFLICT SEQADV 9YZU LYS F 27 UNP P03069 EXPRESSION TAG SEQADV 9YZU GLN F 28 UNP P03069 EXPRESSION TAG SEQADV 9YZU CYS F 29 UNP P03069 EXPRESSION TAG SEQADV 9YZU LYS D 27 UNP P03069 EXPRESSION TAG SEQADV 9YZU GLN D 28 UNP P03069 EXPRESSION TAG SEQADV 9YZU CYS D 29 UNP P03069 EXPRESSION TAG SEQADV 9YZU LYS E 27 UNP P03069 EXPRESSION TAG SEQADV 9YZU GLN E 28 UNP P03069 EXPRESSION TAG SEQADV 9YZU CYS E 29 UNP P03069 EXPRESSION TAG SEQRES 1 A 31 DC DC DT DG DT DG DA DC DA DA DA DT DT SEQRES 2 A 31 DG DC DC DC DT DC DA DG DA DT DG DA DG SEQRES 3 A 31 DT DC DA DT DA SEQRES 1 B 31 DG DT DA DT DG DA DC DT DC DA DT DC DT SEQRES 2 B 31 DG DA DG DG DG DC DA DA DT DT DT DG DT SEQRES 3 B 31 DC DA DC DA DG SEQRES 1 C 263 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 C 263 ALA GLU THR ALA VAL ILE ASN HIS LYS LYS ARG LYS ASN SEQRES 3 C 263 SER PRO ARG ILE VAL GLN SER ASN ASP LEU THR GLU ALA SEQRES 4 C 263 ALA TYR SER LEU SER ARG ASP GLN LYS ARG MET LEU TYR SEQRES 5 C 263 LEU PHE VAL ASP GLN ILE ARG LYS SER ASP GLY THR LEU SEQRES 6 C 263 GLN GLU HIS ASP GLY ILE CYS GLU ILE HIS VAL ALA LYS SEQRES 7 C 263 TYR ALA GLU ILE PHE GLY LEU THR SER ALA GLU ALA SER SEQRES 8 C 263 LYS ASP ILE ARG GLN ALA LEU LYS SER PHE ALA GLY LYS SEQRES 9 C 263 GLU VAL VAL PHE TYR ARG PRO GLU GLU ASP ALA GLY ASP SEQRES 10 C 263 GLU LYS GLY TYR GLU SER PHE PRO TRP PHE ILE LYS PRO SEQRES 11 C 263 ALA HIS SER PRO SER ARG GLY LEU TYR SER VAL HIS ILE SEQRES 12 C 263 ASN PRO TYR LEU ILE PRO PHE PHE ILE GLY LEU GLN ASN SEQRES 13 C 263 ARG PHE THR GLN PHE ARG LEU SER GLU THR LYS GLU ILE SEQRES 14 C 263 THR ASN PRO TYR ALA MET ARG LEU TYR GLU SER LEU CYS SEQRES 15 C 263 GLN TYR ARG LYS PRO ASP GLY SER GLY ILE VAL SER LEU SEQRES 16 C 263 LYS ILE ASP TRP ILE ILE GLU ARG TYR GLN LEU PRO GLN SEQRES 17 C 263 SER TYR GLN ARG MET PRO ASP PHE ARG ARG ARG PHE LEU SEQRES 18 C 263 GLN VAL CYS VAL ASN GLU ILE ASN SER ARG THR PRO MET SEQRES 19 C 263 ARG LEU SER TYR ILE GLU LYS LYS LYS GLY ARG GLN THR SEQRES 20 C 263 THR HIS ILE VAL PHE SER PHE ARG ASP ILE THR SER MET SEQRES 21 C 263 THR THR GLY SEQRES 1 F 29 ASP PRO ALA ALA LEU LYS ARG ALA ARG ASN THR GLU ALA SEQRES 2 F 29 ALA ARG ARG SER ARG ALA ARG LYS LEU GLN ARG MET LYS SEQRES 3 F 29 LYS GLN CYS SEQRES 1 D 29 ASP PRO ALA ALA LEU LYS ARG ALA ARG ASN THR GLU ALA SEQRES 2 D 29 ALA ARG ARG SER ARG ALA ARG LYS LEU GLN ARG MET LYS SEQRES 3 D 29 LYS GLN CYS SEQRES 1 E 29 ASP PRO ALA ALA LEU LYS ARG ALA ARG ASN THR GLU ALA SEQRES 2 E 29 ALA ARG ARG SER ARG ALA ARG LYS LEU GLN ARG MET LYS SEQRES 3 E 29 LYS GLN CYS HET MG B 101 1 HET MG C 301 1 HETNAM MG MAGNESIUM ION FORMUL 7 MG 2(MG 2+) HELIX 1 AA1 ASN C 22 GLU C 26 1 5 HELIX 2 AA2 SER C 32 LYS C 48 1 17 HELIX 3 AA3 VAL C 64 GLY C 72 1 9 HELIX 4 AA4 THR C 74 PHE C 89 1 16 HELIX 5 AA5 ASN C 132 TYR C 134 5 3 HELIX 6 AA6 LEU C 135 ILE C 140 1 6 HELIX 7 AA7 LEU C 151 LYS C 155 1 5 HELIX 8 AA8 ASN C 159 TYR C 172 1 14 HELIX 9 AA9 ILE C 185 GLN C 193 1 9 HELIX 10 AB1 PRO C 195 GLN C 199 5 5 HELIX 11 AB2 ARG C 200 PHE C 208 1 9 HELIX 12 AB3 PHE C 208 THR C 220 1 13 HELIX 13 AB4 ALA F 4 ALA F 14 1 11 HELIX 14 AB5 PRO D 2 ARG D 24 1 23 HELIX 15 AB6 PRO E 2 MET E 25 1 24 SHEET 1 AA1 2 ARG C 17 SER C 21 0 SHEET 2 AA1 2 PHE C 146 ARG C 150 -1 O THR C 147 N GLN C 20 SHEET 1 AA2 3 ILE C 59 HIS C 63 0 SHEET 2 AA2 3 LEU C 126 HIS C 130 -1 O TYR C 127 N ILE C 62 SHEET 3 AA2 3 HIS C 120 SER C 123 -1 N HIS C 120 O SER C 128 SHEET 1 AA3 2 GLU C 93 PHE C 96 0 SHEET 2 AA3 2 GLU C 110 PRO C 113 -1 O GLU C 110 N PHE C 96 SHEET 1 AA4 3 GLY C 179 LYS C 184 0 SHEET 2 AA4 3 GLN C 234 ASP C 244 -1 O ILE C 238 N LEU C 183 SHEET 3 AA4 3 MET C 222 LYS C 231 -1 N LYS C 229 O HIS C 237 LINK O2 DT A 12 MG MG B 101 1555 1555 2.80 LINK O2 DT B 33 MG MG B 101 1555 1555 2.76 LINK OD1 ASP C 81 MG MG C 301 1555 1555 2.44 CRYST1 152.282 127.186 72.976 90.00 117.60 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006567 0.000000 0.003433 0.00000 SCALE2 0.000000 0.007863 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015462 0.00000 CONECT 239 3450 CONECT 1082 3450 CONECT 1765 3451 CONECT 3450 239 1082 CONECT 3451 1765 MASTER 576 0 2 15 10 0 0 6 3421 6 5 36 END