HEADER HYDROLASE 30-OCT-25 9YZV TITLE JOINT XRAY/NEUTRON STRUCTURE OF HUMAN DJ-1 AT ROOM TEMPERATURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN DEGLYCASE DJ-1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DJ-1,ONCOGENE DJ1,PARKINSON DISEASE PROTEIN 7; COMPND 5 EC: 3.1.2.-,3.5.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PARK7; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PARK7, GLYOXALASE, CYCLIC PHOSPHOGLYCERATE ANHYDRIDE HYDROLASE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION; NEUTRON DIFFRACTION AUTHOR J.LIN,A.KOVALEVSKY,A.R.WALKER,M.A.WILSON REVDAT 2 18-FEB-26 9YZV 1 JRNL REVDAT 1 19-NOV-25 9YZV 0 JRNL AUTH J.LIN,O.GERLITS,D.W.KNELLER,K.L.WEISS,L.COATES,J.L.CLARKE, JRNL AUTH 2 M.A.HIX,S.Y.EFFAH,A.KOVALEVSKY,A.R.WALKER,M.A.WILSON JRNL TITL ENVIRONMENTAL CONTRIBUTIONS TO PROTON SHARING IN PROTEIN JRNL TITL 2 LOW-BARRIER HYDROGEN BONDS. JRNL REF BIOCHEMISTRY 2026 JRNL REFN ISSN 0006-2960 JRNL PMID 41656622 JRNL DOI 10.1021/ACS.BIOCHEM.5C00762 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.LIEBSCHNER,P.V.AFONINE,M.L.BAKER,G.BUNKOCZI,V.B.CHEN, REMARK 1 AUTH 2 T.I.CROLL,B.HINTZE,L.W.HUNG,S.JAIN,A.J.MCCOY,N.W.MORIARTY, REMARK 1 AUTH 3 R.D.OEFFNER,B.K.POON,M.G.PRISANT,R.J.READ,J.S.RICHARDSON, REMARK 1 AUTH 4 D.C.RICHARDSON,M.D.SAMMITO,O.V.SOBOLEV,D.H.STOCKWELL, REMARK 1 AUTH 5 T.C.TERWILLIGER,A.G.URZHUMTSEV,L.L.VIDEAU,C.J.WILLIAMS, REMARK 1 AUTH 6 P.D.ADAMS REMARK 1 TITL MACROMOLECULAR STRUCTURE DETERMINATION USING X-RAYS, REMARK 1 TITL 2 NEUTRONS AND ELECTRONS: RECENT DEVELOPMENTS IN PHENIX REMARK 1 REF ACTA CRYSTALLOGR., SECT. D: V. 75 861 2019 REMARK 1 REF 2 BIOL. CRYSTALLOGR. REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 31588918 REMARK 1 DOI 10.1107/S2059798319011471 REMARK 2 REMARK 2 RESOLUTION. 1.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 X-RAY DATA. REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 31054 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.135 REMARK 3 R VALUE (WORKING SET) : 0.133 REMARK 3 FREE R VALUE : 0.155 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1580 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.1300 - 3.6200 0.98 2910 141 0.1280 0.1499 REMARK 3 2 3.6200 - 2.8800 1.00 2740 156 0.1337 0.1513 REMARK 3 3 2.8700 - 2.5100 1.00 2710 135 0.1311 0.1357 REMARK 3 4 2.5100 - 2.2800 1.00 2674 152 0.1213 0.1672 REMARK 3 5 2.2800 - 2.1200 1.00 2658 156 0.1241 0.1544 REMARK 3 6 2.1200 - 1.9900 1.00 2661 132 0.1245 0.1550 REMARK 3 7 1.9900 - 1.8900 1.00 2644 149 0.1389 0.1429 REMARK 3 8 1.8900 - 1.8100 1.00 2618 145 0.1568 0.1891 REMARK 3 9 1.8100 - 1.7400 1.00 2638 132 0.1581 0.1794 REMARK 3 10 1.7400 - 1.6800 1.00 2615 141 0.1731 0.1822 REMARK 3 11 1.6800 - 1.6300 0.99 2606 141 0.2269 0.2250 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.146 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.888 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3727 REMARK 3 ANGLE : 1.462 6526 REMARK 3 CHIRALITY : 0.078 253 REMARK 3 PLANARITY : 0.008 667 REMARK 3 DIHEDRAL : 20.647 938 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -2 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.1700 -23.7350 -16.8948 REMARK 3 T TENSOR REMARK 3 T11: 0.2905 T22: 0.2391 REMARK 3 T33: 0.2298 T12: 0.0187 REMARK 3 T13: -0.0107 T23: 0.0142 REMARK 3 L TENSOR REMARK 3 L11: 3.4038 L22: 3.7732 REMARK 3 L33: 3.8040 L12: -0.5349 REMARK 3 L13: -0.5324 L23: 0.4405 REMARK 3 S TENSOR REMARK 3 S11: -0.0449 S12: 0.1752 S13: -0.2699 REMARK 3 S21: -0.1710 S22: 0.0141 S23: -0.1526 REMARK 3 S31: 0.4154 S32: 0.1630 S33: 0.0629 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 29 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.4357 -26.9044 -12.2249 REMARK 3 T TENSOR REMARK 3 T11: 0.3769 T22: 0.2820 REMARK 3 T33: 0.3035 T12: -0.0746 REMARK 3 T13: -0.0164 T23: 0.0349 REMARK 3 L TENSOR REMARK 3 L11: 4.3730 L22: 3.1599 REMARK 3 L33: 2.6282 L12: -0.1015 REMARK 3 L13: -0.7860 L23: -0.8465 REMARK 3 S TENSOR REMARK 3 S11: -0.1281 S12: 0.0076 S13: -0.6436 REMARK 3 S21: 0.0643 S22: 0.0589 S23: 0.3114 REMARK 3 S31: 0.6540 S32: -0.3722 S33: 0.0814 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 65 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.4142 -28.8171 -3.8633 REMARK 3 T TENSOR REMARK 3 T11: 0.3699 T22: 0.2421 REMARK 3 T33: 0.2501 T12: 0.0458 REMARK 3 T13: -0.0207 T23: 0.0754 REMARK 3 L TENSOR REMARK 3 L11: 4.1023 L22: 4.3840 REMARK 3 L33: 4.8131 L12: -0.6802 REMARK 3 L13: 0.5066 L23: -0.8276 REMARK 3 S TENSOR REMARK 3 S11: -0.0274 S12: -0.3338 S13: -0.4410 REMARK 3 S21: 0.2420 S22: 0.0985 S23: 0.0040 REMARK 3 S31: 0.6271 S32: 0.0220 S33: -0.0497 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 116 THROUGH 157 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.7682 -20.3821 -0.0370 REMARK 3 T TENSOR REMARK 3 T11: 0.2858 T22: 0.3556 REMARK 3 T33: 0.2543 T12: 0.0911 REMARK 3 T13: -0.0698 T23: 0.0043 REMARK 3 L TENSOR REMARK 3 L11: 2.8932 L22: 7.0528 REMARK 3 L33: 5.9272 L12: -1.5166 REMARK 3 L13: 1.4605 L23: -3.0622 REMARK 3 S TENSOR REMARK 3 S11: -0.1289 S12: -0.3281 S13: -0.0187 REMARK 3 S21: 0.5854 S22: 0.0628 S23: -0.4169 REMARK 3 S31: 0.1512 S32: 0.5036 S33: 0.0921 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 158 THROUGH 189 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.9609 -16.2304 -20.3200 REMARK 3 T TENSOR REMARK 3 T11: 0.2446 T22: 0.2767 REMARK 3 T33: 0.2252 T12: 0.0147 REMARK 3 T13: 0.0040 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 4.1485 L22: 2.9185 REMARK 3 L33: 2.9653 L12: -2.2186 REMARK 3 L13: -2.3401 L23: 0.5396 REMARK 3 S TENSOR REMARK 3 S11: -0.0113 S12: 0.0247 S13: 0.0453 REMARK 3 S21: -0.1675 S22: 0.0023 S23: -0.1902 REMARK 3 S31: 0.1814 S32: 0.3586 S33: -0.0294 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 3 NEUTRON DATA. REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 88.0 REMARK 3 NUMBER OF REFLECTIONS : 12346 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 14.0900 - 3.3900 0.86 3021 142 0.1413 0.1977 REMARK 3 2 3.3900 - 2.6900 0.87 2888 157 0.2096 0.2584 REMARK 3 3 2.6900 - 2.3600 0.89 2905 171 0.2796 0.3130 REMARK 3 4 2.3600 - 2.1400 0.90 2909 153 0.3325 0.3753 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.146 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.888 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3727 REMARK 3 ANGLE : 1.462 6526 REMARK 3 CHIRALITY : 0.078 253 REMARK 3 PLANARITY : 0.008 667 REMARK 3 DIHEDRAL : 20.647 938 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -2 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.1700 -23.7350 -16.8948 REMARK 3 T TENSOR REMARK 3 T11: 0.2905 T22: 0.2391 REMARK 3 T33: 0.2298 T12: 0.0187 REMARK 3 T13: -0.0107 T23: 0.0142 REMARK 3 L TENSOR REMARK 3 L11: 3.4038 L22: 3.7732 REMARK 3 L33: 3.8040 L12: -0.5349 REMARK 3 L13: -0.5324 L23: 0.4405 REMARK 3 S TENSOR REMARK 3 S11: -0.0449 S12: 0.1752 S13: -0.2699 REMARK 3 S21: -0.1710 S22: 0.0141 S23: -0.1526 REMARK 3 S31: 0.4154 S32: 0.1630 S33: 0.0629 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 29 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.4357 -26.9044 -12.2249 REMARK 3 T TENSOR REMARK 3 T11: 0.3769 T22: 0.2820 REMARK 3 T33: 0.3035 T12: -0.0746 REMARK 3 T13: -0.0164 T23: 0.0349 REMARK 3 L TENSOR REMARK 3 L11: 4.3730 L22: 3.1599 REMARK 3 L33: 2.6282 L12: -0.1015 REMARK 3 L13: -0.7860 L23: -0.8465 REMARK 3 S TENSOR REMARK 3 S11: -0.1281 S12: 0.0076 S13: -0.6436 REMARK 3 S21: 0.0643 S22: 0.0589 S23: 0.3114 REMARK 3 S31: 0.6540 S32: -0.3722 S33: 0.0814 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 65 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.4142 -28.8171 -3.8633 REMARK 3 T TENSOR REMARK 3 T11: 0.3699 T22: 0.2421 REMARK 3 T33: 0.2501 T12: 0.0458 REMARK 3 T13: -0.0207 T23: 0.0754 REMARK 3 L TENSOR REMARK 3 L11: 4.1023 L22: 4.3840 REMARK 3 L33: 4.8131 L12: -0.6802 REMARK 3 L13: 0.5066 L23: -0.8276 REMARK 3 S TENSOR REMARK 3 S11: -0.0274 S12: -0.3338 S13: -0.4410 REMARK 3 S21: 0.2420 S22: 0.0985 S23: 0.0040 REMARK 3 S31: 0.6271 S32: 0.0220 S33: -0.0497 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 116 THROUGH 157 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.7682 -20.3821 -0.0370 REMARK 3 T TENSOR REMARK 3 T11: 0.2858 T22: 0.3556 REMARK 3 T33: 0.2543 T12: 0.0911 REMARK 3 T13: -0.0698 T23: 0.0043 REMARK 3 L TENSOR REMARK 3 L11: 2.8932 L22: 7.0528 REMARK 3 L33: 5.9272 L12: -1.5166 REMARK 3 L13: 1.4605 L23: -3.0622 REMARK 3 S TENSOR REMARK 3 S11: -0.1289 S12: -0.3281 S13: -0.0187 REMARK 3 S21: 0.5854 S22: 0.0628 S23: -0.4169 REMARK 3 S31: 0.1512 S32: 0.5036 S33: 0.0921 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 158 THROUGH 189 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.9609 -16.2304 -20.3200 REMARK 3 T TENSOR REMARK 3 T11: 0.2446 T22: 0.2767 REMARK 3 T33: 0.2252 T12: 0.0147 REMARK 3 T13: 0.0040 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 4.1485 L22: 2.9185 REMARK 3 L33: 2.9653 L12: -2.2186 REMARK 3 L13: -2.3401 L23: 0.5396 REMARK 3 S TENSOR REMARK 3 S11: -0.0113 S12: 0.0247 S13: 0.0453 REMARK 3 S21: -0.1675 S22: 0.0023 S23: -0.1902 REMARK 3 S31: 0.1814 S32: 0.3586 S33: -0.0294 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9YZV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-OCT-25. REMARK 100 THE DEPOSITION ID IS D_1000301661. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 295 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.542 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31092 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.630 REMARK 200 RESOLUTION RANGE LOW (A) : 48.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 230 REMARK 230 EXPERIMENTAL DETAILS REMARK 230 EXPERIMENT TYPE : NEUTRON DIFFRACTION REMARK 230 DATE OF DATA COLLECTION : 11-SEP-19 REMARK 230 TEMPERATURE (KELVIN) : 295.0 REMARK 230 PH : 7.50 REMARK 230 NUMBER OF CRYSTALS USED : NULL REMARK 230 REMARK 230 NEUTRON SOURCE : SPALLATION SOURCE REMARK 230 BEAMLINE : MANDI REMARK 230 WAVELENGTH OR RANGE (A) : 2.00-4.16 REMARK 230 MONOCHROMATOR : NULL REMARK 230 OPTICS : NULL REMARK 230 REMARK 230 DETECTOR TYPE : SCINTILLATION REMARK 230 DETECTOR MANUFACTURER : ORNL ANGER CAMERA REMARK 230 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 230 DATA SCALING SOFTWARE : NULL REMARK 230 REMARK 230 NUMBER OF UNIQUE REFLECTIONS : 12347 REMARK 230 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 230 RESOLUTION RANGE LOW (A) : 14.820 REMARK 230 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 230 REMARK 230 OVERALL. REMARK 230 COMPLETENESS FOR RANGE (%) : 88.6 REMARK 230 DATA REDUNDANCY : 9.400 REMARK 230 R MERGE (I) : NULL REMARK 230 R SYM (I) : NULL REMARK 230 FOR THE DATA SET : 9.7000 REMARK 230 REMARK 230 IN THE HIGHEST RESOLUTION SHELL. REMARK 230 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 230 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 230 COMPLETENESS FOR SHELL (%) : NULL REMARK 230 DATA REDUNDANCY IN SHELL : NULL REMARK 230 R MERGE FOR SHELL (I) : NULL REMARK 230 R SYM FOR SHELL (I) : NULL REMARK 230 FOR SHELL : NULL REMARK 230 REMARK 230 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 230 SOFTWARE USED : NULL REMARK 230 STARTING MODEL: NULL REMARK 230 REMARK 230 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 100 MM HEPES PH=7.5 AND REMARK 280 200 MM KCL, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 119.86067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 59.93033 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 89.89550 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 29.96517 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 149.82583 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 119.86067 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 59.93033 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 29.96517 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 89.89550 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 149.82583 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -29.96517 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 24 D D8U A 201 0.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 28 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 1 76.19 -117.75 REMARK 500 CYS A 106 -113.08 59.13 REMARK 500 CSD A 106 -102.25 74.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 429 DISTANCE = 6.65 ANGSTROMS DBREF 9YZV A 1 189 UNP Q99497 PARK7_HUMAN 1 189 SEQADV 9YZV GLY A -2 UNP Q99497 EXPRESSION TAG SEQADV 9YZV SER A -1 UNP Q99497 EXPRESSION TAG SEQADV 9YZV HIS A 0 UNP Q99497 EXPRESSION TAG SEQRES 1 A 192 GLY SER HIS MET ALA SER LYS ARG ALA LEU VAL ILE LEU SEQRES 2 A 192 ALA LYS GLY ALA GLU GLU MET GLU THR VAL ILE PRO VAL SEQRES 3 A 192 ASP VAL MET ARG ARG ALA GLY ILE LYS VAL THR VAL ALA SEQRES 4 A 192 GLY LEU ALA GLY LYS ASP PRO VAL GLN CYS SER ARG ASP SEQRES 5 A 192 VAL VAL ILE CYS PRO ASP ALA SER LEU GLU ASP ALA LYS SEQRES 6 A 192 LYS GLU GLY PRO TYR ASP VAL VAL VAL LEU PRO GLY GLY SEQRES 7 A 192 ASN LEU GLY ALA GLN ASN LEU SER GLU SER ALA ALA VAL SEQRES 8 A 192 LYS GLU ILE LEU LYS GLU GLN GLU ASN ARG LYS GLY LEU SEQRES 9 A 192 ILE ALA ALA ILE CYS ALA GLY PRO THR ALA LEU LEU ALA SEQRES 10 A 192 HIS GLU ILE GLY PHE GLY SER LYS VAL THR THR HIS PRO SEQRES 11 A 192 LEU ALA LYS ASP LYS MET MET ASN GLY GLY HIS TYR THR SEQRES 12 A 192 TYR SER GLU ASN ARG VAL GLU LYS ASP GLY LEU ILE LEU SEQRES 13 A 192 THR SER ARG GLY PRO GLY THR SER PHE GLU PHE ALA LEU SEQRES 14 A 192 ALA ILE VAL GLU ALA LEU ASN GLY LYS GLU VAL ALA ALA SEQRES 15 A 192 GLN VAL LYS ALA PRO LEU VAL LEU LYS ASP HET CSD A 106 12 HET D8U A 201 1 HETNAM CSD 3-SULFINOALANINE HETNAM D8U DEUTERIUM(1+) HETSYN CSD S-CYSTEINESULFINIC ACID; S-SULFINOCYSTEINE FORMUL 1 CSD C3 H7 N O4 S FORMUL 2 D8U D 1+ FORMUL 3 HOH *129(H2 O) HELIX 1 AA1 GLU A 15 ALA A 29 1 15 HELIX 2 AA2 LEU A 58 GLU A 64 1 7 HELIX 3 AA3 GLY A 75 SER A 85 1 11 HELIX 4 AA4 SER A 85 ARG A 98 1 14 HELIX 5 AA5 GLY A 108 HIS A 115 1 8 HELIX 6 AA6 HIS A 126 LEU A 128 5 3 HELIX 7 AA7 ALA A 129 MET A 134 1 6 HELIX 8 AA8 GLY A 157 GLY A 159 5 3 HELIX 9 AA9 THR A 160 GLY A 174 1 15 HELIX 10 AB1 GLY A 174 ALA A 183 1 10 SHEET 1 AA1 7 ALA A 56 SER A 57 0 SHEET 2 AA1 7 LYS A 32 GLY A 37 1 N GLY A 37 O ALA A 56 SHEET 3 AA1 7 ARG A 5 LEU A 10 1 N LEU A 10 O ALA A 36 SHEET 4 AA1 7 VAL A 69 LEU A 72 1 O VAL A 71 N LEU A 7 SHEET 5 AA1 7 LEU A 101 ILE A 105 1 O ALA A 103 N VAL A 70 SHEET 6 AA1 7 ILE A 152 SER A 155 1 O LEU A 153 N ILE A 102 SHEET 7 AA1 7 VAL A 146 ASP A 149 -1 N ASP A 149 O ILE A 152 SHEET 1 AA2 2 VAL A 44 GLN A 45 0 SHEET 2 AA2 2 VAL A 51 ILE A 52 -1 O ILE A 52 N VAL A 44 SHEET 1 AA3 2 LYS A 122 VAL A 123 0 SHEET 2 AA3 2 THR A 140 TYR A 141 1 O THR A 140 N VAL A 123 LINK C ILE A 105 N BCSD A 106 1555 1555 1.33 LINK C BCSD A 106 N ALA A 107 1555 1555 1.34 CISPEP 1 GLY A 65 PRO A 66 0 -3.18 CRYST1 67.410 67.410 179.791 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014835 0.008565 0.000000 0.00000 SCALE2 0.000000 0.017130 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005562 0.00000 CONECT 1893 1921 CONECT 1921 1893 1922 1929 CONECT 1922 1921 1923 1925 CONECT 1923 1922 1924 CONECT 1924 1923 1927 1928 CONECT 1925 1922 1926 1933 CONECT 1926 1925 CONECT 1927 1924 CONECT 1928 1924 CONECT 1929 1921 CONECT 1933 1925 MASTER 577 0 2 10 11 0 0 6 1549 1 11 15 END