HEADER DNA BINDING PROTEIN 03-NOV-25 9Z1D TITLE ISORETICULAR CO-CRYSTAL 1 WITH ASYMMETRICAL EXPANDED DUPLEX (31MER) TITLE 2 CONTAINING INSERT SEQUENCE GCTTGATGAG, CRYSTAL SOAKED IN ALTERNATE TITLE 3 SOLVENT PRIOR TO DIFFRACTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (31-MER); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (31-MER); COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: REPLICATION INITIATION PROTEIN; COMPND 11 CHAIN: C; COMPND 12 SYNONYM: PROTEIN E,PROTEIN REP,PROTEIN F4, REPLICATION INITIATOR COMPND 13 PROTEIN REPE54; COMPND 14 ENGINEERED: YES; COMPND 15 OTHER_DETAILS: REPLICATION INITIATOR PROTEIN REPE54 WITH N-TERMINAL COMPND 16 SOLUBILITY TAG AND N-TERMINAL 6XHIS TAG SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 4 ORGANISM_TAXID: 562; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 8 ORGANISM_TAXID: 562; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 11 ORGANISM_TAXID: 562; SOURCE 12 GENE: REPE, E, REP, ECOK12F045; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PROTEIN-DNA COMPLEX, DNA BINDING PROTEIN, TRANSCRIPTION FACTOR EXPDTA X-RAY DIFFRACTION AUTHOR E.T.SHIELDS,C.K.SLAUGHTER,E.N.MAGNA,C.D.SNOW REVDAT 1 18-FEB-26 9Z1D 0 JRNL AUTH E.T.SHIELDS,C.K.SLAUGHTER,F.MEKKAOUI,E.N.MAGNA,C.SHEPHERD, JRNL AUTH 2 P.S.LUKEMAN,D.E.SPRATT,C.D.SNOW JRNL TITL MODULAR SCAFFOLD CRYSTALS FOR PROGRAMMABLE INSTALLATION AND JRNL TITL 2 STRUCTURAL OBSERVATION OF DNA-BINDING PROTEINS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.LIEBSCHNER,P.V.AFONINE,M.L.BAKER,G.BUNKOCZI,V.B.CHEN, REMARK 1 AUTH 2 T.I.CROLL,B.HINTZE,L.W.HUNG,S.JAIN,A.J.MCCOY,N.W.MORIARTY, REMARK 1 AUTH 3 R.D.OEFFNER,B.K.POON,M.G.PRISANT,R.J.READ,J.S.RICHARDSON, REMARK 1 AUTH 4 D.C.RICHARDSON,M.D.SAMMITO,O.V.SOBOLEV,D.H.STOCKWELL, REMARK 1 AUTH 5 T.C.TERWILLIGER,A.G.URZHUMTSEV,L.L.VIDEAU,C.J.WILLIAMS, REMARK 1 AUTH 6 P.D.ADAMS REMARK 1 TITL MACROMOLECULAR STRUCTURE DETERMINATION USING X-RAYS, REMARK 1 TITL 2 NEUTRONS AND ELECTRONS: RECENT DEVELOPMENTS IN PHENIX REMARK 1 REF ACTA CRYSTALLOGR D STRUCT 2019 REMARK 1 REF 2 BIOL REMARK 1 REFN REMARK 1 PMID 31588918 REMARK 1 DOI 10.1107/S2059798319011471 REMARK 2 REMARK 2 RESOLUTION. 3.06 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.2_5419 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.06 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 22199 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.296 REMARK 3 R VALUE (WORKING SET) : 0.293 REMARK 3 FREE R VALUE : 0.318 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.030 REMARK 3 FREE R VALUE TEST SET COUNT : 2227 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.7200 - 7.7000 0.98 1306 143 0.1891 0.2238 REMARK 3 2 7.7000 - 6.1200 1.00 1284 146 0.2836 0.2915 REMARK 3 3 6.1200 - 5.3500 1.00 1293 148 0.2827 0.3494 REMARK 3 4 5.3400 - 4.8600 1.00 1307 132 0.2849 0.3606 REMARK 3 5 4.8600 - 4.5100 1.00 1244 140 0.3038 0.2814 REMARK 3 6 4.5100 - 4.2400 0.98 1283 149 0.2861 0.2936 REMARK 3 7 4.2400 - 4.0300 0.98 1259 139 0.3047 0.3102 REMARK 3 8 4.0300 - 3.8600 0.99 1264 148 0.3281 0.2872 REMARK 3 9 3.8600 - 3.7100 0.99 1281 140 0.3426 0.3435 REMARK 3 10 3.7100 - 3.5800 1.00 1267 152 0.3744 0.4326 REMARK 3 11 3.5800 - 3.4700 0.99 1284 138 0.4027 0.3925 REMARK 3 12 3.4700 - 3.3700 0.97 1232 138 0.4670 0.4857 REMARK 3 13 3.3700 - 3.2800 0.97 1248 121 0.5115 0.5286 REMARK 3 14 3.2800 - 3.2000 0.96 1201 155 0.5621 0.6131 REMARK 3 15 3.2000 - 3.1300 0.94 1218 126 0.6185 0.6106 REMARK 3 16 3.1300 - 3.0600 0.78 1001 112 0.7702 0.9681 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.715 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 46.282 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 113.1 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 153.5 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3036 REMARK 3 ANGLE : 0.574 4313 REMARK 3 CHIRALITY : 0.039 491 REMARK 3 PLANARITY : 0.005 355 REMARK 3 DIHEDRAL : 27.064 1219 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9Z1D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-NOV-25. REMARK 100 THE DEPOSITION ID IS D_1000299079. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22756 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.060 REMARK 200 RESOLUTION RANGE LOW (A) : 46.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.12900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.06 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 1.30000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: PARALLELEPIPED REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 80.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25MM MAGNESIUM ACETATE, 800MM LITHIUM REMARK 280 SULFATE, 50MM MES PH 6.5. THE CRYSTAL WAS CROSSLINKED WITH 50MG/ REMARK 280 ML EDC OVERNIGHT, AND THEN LOOPED INTO A SOLUTION OF 10MM HEPES REMARK 280 PH 6.5, 50MM SODIUM CHLORIDE, 2.5 MM MAGNESIUM CHLORIDE, 800MM REMARK 280 LITHIUM SULFATE, 15MM MAGNESIUM ACETATE, 25MM MES PH 6.5, AND 80 REMARK 280 MICROMOLAR ULTRABITHORAX HOMEODOMAIN., VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 35.98017 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 62.26850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 68.27019 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 35.98017 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 62.26850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 68.27019 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C -11 REMARK 465 ARG C -10 REMARK 465 GLY C -9 REMARK 465 SER C -8 REMARK 465 HIS C -7 REMARK 465 HIS C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 GLU C 3 REMARK 465 THR C 4 REMARK 465 ALA C 5 REMARK 465 VAL C 6 REMARK 465 ILE C 7 REMARK 465 ASN C 8 REMARK 465 HIS C 9 REMARK 465 LYS C 10 REMARK 465 LYS C 11 REMARK 465 ARG C 12 REMARK 465 LYS C 13 REMARK 465 ASN C 14 REMARK 465 ASP C 50 REMARK 465 GLY C 51 REMARK 465 THR C 52 REMARK 465 LEU C 53 REMARK 465 GLN C 54 REMARK 465 GLU C 55 REMARK 465 PRO C 99 REMARK 465 GLU C 100 REMARK 465 GLU C 101 REMARK 465 ASP C 102 REMARK 465 ALA C 103 REMARK 465 GLY C 104 REMARK 465 ASP C 105 REMARK 465 GLU C 106 REMARK 465 LYS C 107 REMARK 465 GLY C 108 REMARK 465 GLY C 141 REMARK 465 MET C 248 REMARK 465 THR C 249 REMARK 465 THR C 250 REMARK 465 GLY C 251 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG C 17 CG CD NE CZ NH1 NH2 REMARK 470 ILE C 18 CG1 CG2 CD1 REMARK 470 GLN C 20 CG CD OE1 NE2 REMARK 470 LEU C 24 CG CD1 CD2 REMARK 470 GLU C 26 CG CD OE1 OE2 REMARK 470 LEU C 31 CG CD1 CD2 REMARK 470 LYS C 36 CG CD CE NZ REMARK 470 MET C 38 CG SD CE REMARK 470 LEU C 39 CG CD1 CD2 REMARK 470 LEU C 41 CG CD1 CD2 REMARK 470 PHE C 42 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL C 43 CG1 CG2 REMARK 470 ILE C 46 CG1 CG2 CD1 REMARK 470 ARG C 47 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 48 CG CD CE NZ REMARK 470 HIS C 56 CG ND1 CD2 CE1 NE2 REMARK 470 ASP C 57 CG OD1 OD2 REMARK 470 ILE C 59 CG1 CG2 CD1 REMARK 470 CYS C 60 SG REMARK 470 GLU C 61 CG CD OE1 OE2 REMARK 470 ILE C 62 CG1 CG2 CD1 REMARK 470 LYS C 66 CG CD CE NZ REMARK 470 TYR C 67 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU C 69 CG CD OE1 OE2 REMARK 470 ILE C 70 CG1 CG2 CD1 REMARK 470 SER C 75 OG REMARK 470 ILE C 82 CG1 CG2 CD1 REMARK 470 LEU C 86 CG CD1 CD2 REMARK 470 LYS C 87 CG CD CE NZ REMARK 470 ARG C 98 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 110 CG CD OE1 OE2 REMARK 470 PHE C 112 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS C 117 CG CD CE NZ REMARK 470 HIS C 120 CG ND1 CD2 CE1 NE2 REMARK 470 LEU C 126 CG CD1 CD2 REMARK 470 SER C 128 OG REMARK 470 HIS C 130 CG ND1 CD2 CE1 NE2 REMARK 470 ILE C 131 CG1 CG2 CD1 REMARK 470 LEU C 135 CG CD1 CD2 REMARK 470 ILE C 136 CG1 CG2 CD1 REMARK 470 PHE C 138 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE C 139 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU C 142 CG CD1 CD2 REMARK 470 GLN C 143 CG CD OE1 NE2 REMARK 470 ASN C 144 CG OD1 ND2 REMARK 470 ARG C 145 CG CD NE CZ NH1 NH2 REMARK 470 PHE C 146 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN C 148 CG CD OE1 NE2 REMARK 470 ARG C 150 CG CD NE CZ NH1 NH2 REMARK 470 LEU C 151 CG CD1 CD2 REMARK 470 ILE C 157 CG1 CG2 CD1 REMARK 470 LEU C 165 CD1 CD2 REMARK 470 LEU C 169 CD1 CD2 REMARK 470 ARG C 173 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 174 CG CD CE NZ REMARK 470 VAL C 181 CG1 CG2 REMARK 470 SER C 182 OG REMARK 470 LEU C 183 CD1 CD2 REMARK 470 LYS C 184 CG CD CE NZ REMARK 470 ARG C 219 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 223 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 231 CG CD CE NZ REMARK 470 ARG C 243 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP C 57 -70.06 -105.16 REMARK 500 GLN C 143 -101.03 -74.62 REMARK 500 ARG C 145 75.06 -114.87 REMARK 500 PHE C 208 -66.96 -106.83 REMARK 500 ARG C 219 15.41 -140.72 REMARK 500 THR C 246 0.06 -66.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 77 OE2 REMARK 620 2 ASP C 81 OD1 82.3 REMARK 620 N 1 DBREF 9Z1D A 1 31 PDB 9Z1D 9Z1D 1 31 DBREF 9Z1D B 12 42 PDB 9Z1D 9Z1D 12 42 DBREF 9Z1D C 1 251 UNP P03856 REPE1_ECOLI 1 251 SEQADV 9Z1D MET C -11 UNP P03856 INITIATING METHIONINE SEQADV 9Z1D ARG C -10 UNP P03856 EXPRESSION TAG SEQADV 9Z1D GLY C -9 UNP P03856 EXPRESSION TAG SEQADV 9Z1D SER C -8 UNP P03856 EXPRESSION TAG SEQADV 9Z1D HIS C -7 UNP P03856 EXPRESSION TAG SEQADV 9Z1D HIS C -6 UNP P03856 EXPRESSION TAG SEQADV 9Z1D HIS C -5 UNP P03856 EXPRESSION TAG SEQADV 9Z1D HIS C -4 UNP P03856 EXPRESSION TAG SEQADV 9Z1D HIS C -3 UNP P03856 EXPRESSION TAG SEQADV 9Z1D HIS C -2 UNP P03856 EXPRESSION TAG SEQADV 9Z1D GLY C -1 UNP P03856 EXPRESSION TAG SEQADV 9Z1D SER C 0 UNP P03856 EXPRESSION TAG SEQADV 9Z1D PRO C 118 UNP P03856 ARG 118 CONFLICT SEQRES 1 A 31 DC DC DT DG DT DG DA DC DA DA DA DT DT SEQRES 2 A 31 DG DC DC DC DT DC DA DG DG DC DT DT DG SEQRES 3 A 31 DA DT DG DA DG SEQRES 1 B 31 DG DC DT DC DA DT DC DA DA DG DC DC DT SEQRES 2 B 31 DG DA DG DG DG DC DA DA DT DT DT DG DT SEQRES 3 B 31 DC DA DC DA DG SEQRES 1 C 263 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 C 263 ALA GLU THR ALA VAL ILE ASN HIS LYS LYS ARG LYS ASN SEQRES 3 C 263 SER PRO ARG ILE VAL GLN SER ASN ASP LEU THR GLU ALA SEQRES 4 C 263 ALA TYR SER LEU SER ARG ASP GLN LYS ARG MET LEU TYR SEQRES 5 C 263 LEU PHE VAL ASP GLN ILE ARG LYS SER ASP GLY THR LEU SEQRES 6 C 263 GLN GLU HIS ASP GLY ILE CYS GLU ILE HIS VAL ALA LYS SEQRES 7 C 263 TYR ALA GLU ILE PHE GLY LEU THR SER ALA GLU ALA SER SEQRES 8 C 263 LYS ASP ILE ARG GLN ALA LEU LYS SER PHE ALA GLY LYS SEQRES 9 C 263 GLU VAL VAL PHE TYR ARG PRO GLU GLU ASP ALA GLY ASP SEQRES 10 C 263 GLU LYS GLY TYR GLU SER PHE PRO TRP PHE ILE LYS PRO SEQRES 11 C 263 ALA HIS SER PRO SER ARG GLY LEU TYR SER VAL HIS ILE SEQRES 12 C 263 ASN PRO TYR LEU ILE PRO PHE PHE ILE GLY LEU GLN ASN SEQRES 13 C 263 ARG PHE THR GLN PHE ARG LEU SER GLU THR LYS GLU ILE SEQRES 14 C 263 THR ASN PRO TYR ALA MET ARG LEU TYR GLU SER LEU CYS SEQRES 15 C 263 GLN TYR ARG LYS PRO ASP GLY SER GLY ILE VAL SER LEU SEQRES 16 C 263 LYS ILE ASP TRP ILE ILE GLU ARG TYR GLN LEU PRO GLN SEQRES 17 C 263 SER TYR GLN ARG MET PRO ASP PHE ARG ARG ARG PHE LEU SEQRES 18 C 263 GLN VAL CYS VAL ASN GLU ILE ASN SER ARG THR PRO MET SEQRES 19 C 263 ARG LEU SER TYR ILE GLU LYS LYS LYS GLY ARG GLN THR SEQRES 20 C 263 THR HIS ILE VAL PHE SER PHE ARG ASP ILE THR SER MET SEQRES 21 C 263 THR THR GLY HET MG C 301 1 HETNAM MG MAGNESIUM ION FORMUL 4 MG MG 2+ HELIX 1 AA1 ASN C 22 GLU C 26 1 5 HELIX 2 AA2 SER C 32 LYS C 48 1 17 HELIX 3 AA3 VAL C 64 GLY C 72 1 9 HELIX 4 AA4 THR C 74 PHE C 89 1 16 HELIX 5 AA5 LEU C 135 ILE C 140 1 6 HELIX 6 AA6 LEU C 151 LYS C 155 1 5 HELIX 7 AA7 ASN C 159 TYR C 172 1 14 HELIX 8 AA8 ILE C 185 GLN C 193 1 9 HELIX 9 AA9 PRO C 195 GLN C 199 5 5 HELIX 10 AB1 ARG C 200 PHE C 208 1 9 HELIX 11 AB2 PHE C 208 THR C 220 1 13 SHEET 1 AA1 2 ARG C 17 SER C 21 0 SHEET 2 AA1 2 PHE C 146 ARG C 150 -1 O THR C 147 N GLN C 20 SHEET 1 AA2 3 ILE C 59 HIS C 63 0 SHEET 2 AA2 3 LEU C 126 ILE C 131 -1 O VAL C 129 N CYS C 60 SHEET 3 AA2 3 PHE C 115 SER C 123 -1 N HIS C 120 O SER C 128 SHEET 1 AA3 2 GLU C 93 VAL C 95 0 SHEET 2 AA3 2 SER C 111 PRO C 113 -1 O PHE C 112 N VAL C 94 SHEET 1 AA4 3 GLY C 179 LYS C 184 0 SHEET 2 AA4 3 GLN C 234 ASP C 244 -1 O ILE C 238 N LEU C 183 SHEET 3 AA4 3 MET C 222 LYS C 231 -1 N ARG C 223 O ARG C 243 LINK OE2 GLU C 77 MG MG C 301 1555 1555 2.21 LINK OD1 ASP C 81 MG MG C 301 1555 1555 2.48 CRYST1 72.375 124.537 136.541 90.00 90.17 90.00 I 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013817 0.000000 0.000042 0.00000 SCALE2 0.000000 0.008030 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007324 0.00000 CONECT 1635 2851 CONECT 1662 2851 CONECT 2851 1635 1662 MASTER 384 0 1 11 10 0 0 6 2834 3 3 27 END