data_9Z6I # _entry.id 9Z6I # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.414 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9Z6I pdb_00009z6i 10.2210/pdb9z6i/pdb WWPDB D_1000302109 ? ? EMDB EMD-73840 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2026-05-27 ? 2 'EM metadata' 1 0 2026-05-27 ? 3 FSC 1 0 2026-05-27 ? 4 'Half map' 1 0 2026-05-27 1 5 'Half map' 1 0 2026-05-27 2 6 Image 1 0 2026-05-27 ? 7 Mask 1 0 2026-05-27 1 8 'Primary map' 1 0 2026-05-27 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 FSC repository 'Initial release' ? ? 4 4 'Half map' repository 'Initial release' ? ? 5 5 'Half map' repository 'Initial release' ? ? 6 6 Image repository 'Initial release' ? ? 7 7 Mask repository 'Initial release' ? ? 8 8 'Primary map' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9Z6I _pdbx_database_status.recvd_initial_deposition_date 2025-11-14 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type EMDB . EMD-73655 'consensus EM volume' EMDB . EMD-73618 'focused EM volume' PDB 'Structure of the core region' 9YXV unspecified EMDB 'Cryo-EM structure of the open state of cIL RNA region at 4.3 A resolution' EMD-73840 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email akossiak@uchicagomedicine.org _pdbx_contact_author.name_first Anthony _pdbx_contact_author.name_last Kossiakoff _pdbx_contact_author.name_mi V. _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-3174-9359 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Filippova, E.V.' 1 0000-0001-6382-4929 'Kossiakoff, A.A.' 2 0000-0003-3174-9359 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 54 _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'A universal Fab targeting a conserved U1A-RNA epitope for RNA structure determination by cryo-EM' _citation.year 2026 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkag502 _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Filippova, E.V.' 1 ? primary 'Krochmal, D.' 2 ? primary 'Mukherjee, S.' 3 ? primary 'Piccirilli, J.A.' 4 ? primary 'Kossiakoff, A.A.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'RNA (155-MER)' _entity.formula_weight 49835.676 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;UCCAGUAGGAACACUAUACUACUGGAUAAUCAAAGACAAAUCUGCCCGAAGGGCUUGAGAACAUAACCCAUUGCACUCCG GGUAUGCAGAGGUGGCAGCCUCCGGUGGGUUAAAACCCAACGUUCUCAACAAUAGUGACCCAUUGCACUCCGGGU ; _entity_poly.pdbx_seq_one_letter_code_can ;UCCAGUAGGAACACUAUACUACUGGAUAAUCAAAGACAAAUCUGCCCGAAGGGCUUGAGAACAUAACCCAUUGCACUCCG GGUAUGCAGAGGUGGCAGCCUCCGGUGGGUUAAAACCCAACGUUCUCAACAAUAGUGACCCAUUGCACUCCGGGU ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 U n 1 2 C n 1 3 C n 1 4 A n 1 5 G n 1 6 U n 1 7 A n 1 8 G n 1 9 G n 1 10 A n 1 11 A n 1 12 C n 1 13 A n 1 14 C n 1 15 U n 1 16 A n 1 17 U n 1 18 A n 1 19 C n 1 20 U n 1 21 A n 1 22 C n 1 23 U n 1 24 G n 1 25 G n 1 26 A n 1 27 U n 1 28 A n 1 29 A n 1 30 U n 1 31 C n 1 32 A n 1 33 A n 1 34 A n 1 35 G n 1 36 A n 1 37 C n 1 38 A n 1 39 A n 1 40 A n 1 41 U n 1 42 C n 1 43 U n 1 44 G n 1 45 C n 1 46 C n 1 47 C n 1 48 G n 1 49 A n 1 50 A n 1 51 G n 1 52 G n 1 53 G n 1 54 C n 1 55 U n 1 56 U n 1 57 G n 1 58 A n 1 59 G n 1 60 A n 1 61 A n 1 62 C n 1 63 A n 1 64 U n 1 65 A n 1 66 A n 1 67 C n 1 68 C n 1 69 C n 1 70 A n 1 71 U n 1 72 U n 1 73 G n 1 74 C n 1 75 A n 1 76 C n 1 77 U n 1 78 C n 1 79 C n 1 80 G n 1 81 G n 1 82 G n 1 83 U n 1 84 A n 1 85 U n 1 86 G n 1 87 C n 1 88 A n 1 89 G n 1 90 A n 1 91 G n 1 92 G n 1 93 U n 1 94 G n 1 95 G n 1 96 C n 1 97 A n 1 98 G n 1 99 C n 1 100 C n 1 101 U n 1 102 C n 1 103 C n 1 104 G n 1 105 G n 1 106 U n 1 107 G n 1 108 G n 1 109 G n 1 110 U n 1 111 U n 1 112 A n 1 113 A n 1 114 A n 1 115 A n 1 116 C n 1 117 C n 1 118 C n 1 119 A n 1 120 A n 1 121 C n 1 122 G n 1 123 U n 1 124 U n 1 125 C n 1 126 U n 1 127 C n 1 128 A n 1 129 A n 1 130 C n 1 131 A n 1 132 A n 1 133 U n 1 134 A n 1 135 G n 1 136 U n 1 137 G n 1 138 A n 1 139 C n 1 140 C n 1 141 C n 1 142 A n 1 143 U n 1 144 U n 1 145 G n 1 146 C n 1 147 A n 1 148 C n 1 149 U n 1 150 C n 1 151 C n 1 152 G n 1 153 G n 1 154 G n 1 155 U n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 155 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details 'RNA was produced in vitro by transcribing a synthetic DNA construct using T7 RNA polymerase from a linearized pUC307HP plasmid' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 U 1 -7 ? ? ? A . n A 1 2 C 2 -6 -6 C C A . n A 1 3 C 3 -5 -5 C C A . n A 1 4 A 4 -4 -4 A A A . n A 1 5 G 5 -3 -3 G G A . n A 1 6 U 6 -2 -2 U U A . n A 1 7 A 7 -1 -1 A A A . n A 1 8 G 8 1 1 G G A . n A 1 9 G 9 2 2 G G A . n A 1 10 A 10 3 3 A A A . n A 1 11 A 11 4 4 A A A . n A 1 12 C 12 5 5 C C A . n A 1 13 A 13 6 6 A A A . n A 1 14 C 14 7 7 C C A . n A 1 15 U 15 8 8 U U A . n A 1 16 A 16 9 9 A A A . n A 1 17 U 17 10 10 U U A . n A 1 18 A 18 11 11 A A A . n A 1 19 C 19 12 12 C C A . n A 1 20 U 20 13 13 U U A . n A 1 21 A 21 14 14 A A A . n A 1 22 C 22 15 15 C C A . n A 1 23 U 23 16 16 U U A . n A 1 24 G 24 17 17 G G A . n A 1 25 G 25 18 18 G G A . n A 1 26 A 26 19 19 A A A . n A 1 27 U 27 20 ? ? ? A . n A 1 28 A 28 21 ? ? ? A . n A 1 29 A 29 22 ? ? ? A . n A 1 30 U 30 23 ? ? ? A . n A 1 31 C 31 24 ? ? ? A . n A 1 32 A 32 25 ? ? ? A . n A 1 33 A 33 26 ? ? ? A . n A 1 34 A 34 27 ? ? ? A . n A 1 35 G 35 28 ? ? ? A . n A 1 36 A 36 29 29 A A A . n A 1 37 C 37 30 30 C C A . n A 1 38 A 38 31 31 A A A . n A 1 39 A 39 32 32 A A A . n A 1 40 A 40 33 33 A A A . n A 1 41 U 41 34 34 U U A . n A 1 42 C 42 35 35 C C A . n A 1 43 U 43 36 36 U U A . n A 1 44 G 44 37 37 G G A . n A 1 45 C 45 38 38 C C A . n A 1 46 C 46 39 39 C C A . n A 1 47 C 47 40 40 C C A . n A 1 48 G 48 41 41 G G A . n A 1 49 A 49 42 42 A A A . n A 1 50 A 50 43 43 A A A . n A 1 51 G 51 44 44 G G A . n A 1 52 G 52 45 45 G G A . n A 1 53 G 53 46 46 G G A . n A 1 54 C 54 47 47 C C A . n A 1 55 U 55 48 48 U U A . n A 1 56 U 56 49 49 U U A . n A 1 57 G 57 50 50 G G A . n A 1 58 A 58 51 51 A A A . n A 1 59 G 59 52 52 G G A . n A 1 60 A 60 53 53 A A A . n A 1 61 A 61 54 54 A A A . n A 1 62 C 62 55 55 C C A . n A 1 63 A 63 56 56 A A A . n A 1 64 U 64 57 57 U U A . n A 1 65 A 65 57 ? ? ? A A n A 1 66 A 66 57 ? ? ? A B n A 1 67 C 67 57 ? ? ? A C n A 1 68 C 68 57 ? ? ? A D n A 1 69 C 69 57 ? ? ? A E n A 1 70 A 70 57 ? ? ? A F n A 1 71 U 71 57 ? ? ? A G n A 1 72 U 72 57 ? ? ? A H n A 1 73 G 73 57 ? ? ? A I n A 1 74 C 74 57 ? ? ? A J n A 1 75 A 75 57 ? ? ? A K n A 1 76 C 76 57 ? ? ? A L n A 1 77 U 77 57 ? ? ? A M n A 1 78 C 78 57 ? ? ? A N n A 1 79 C 79 57 ? ? ? A O n A 1 80 G 80 57 ? ? ? A P n A 1 81 G 81 57 ? ? ? A Q n A 1 82 G 82 57 ? ? ? A R n A 1 83 U 83 57 ? ? ? A S n A 1 84 A 84 67 67 A A A . n A 1 85 U 85 68 68 U U A . n A 1 86 G 86 69 69 G G A . n A 1 87 C 87 70 70 C C A . n A 1 88 A 88 71 71 A A A . n A 1 89 G 89 72 72 G G A . n A 1 90 A 90 73 73 A A A . n A 1 91 G 91 74 74 G G A . n A 1 92 G 92 75 75 G G A . n A 1 93 U 93 76 76 U U A . n A 1 94 G 94 77 77 G G A . n A 1 95 G 95 78 78 G G A . n A 1 96 C 96 79 79 C C A . n A 1 97 A 97 80 80 A A A . n A 1 98 G 98 81 81 G G A . n A 1 99 C 99 82 82 C C A . n A 1 100 C 100 83 83 C C A . n A 1 101 U 101 84 84 U U A . n A 1 102 C 102 85 85 C C A . n A 1 103 C 103 86 86 C C A . n A 1 104 G 104 87 87 G G A . n A 1 105 G 105 88 88 G G A . n A 1 106 U 106 89 89 U U A . n A 1 107 G 107 90 90 G G A . n A 1 108 G 108 91 91 G G A . n A 1 109 G 109 92 92 G G A . n A 1 110 U 110 93 93 U U A . n A 1 111 U 111 94 94 U U A . n A 1 112 A 112 95 95 A A A . n A 1 113 A 113 96 96 A A A . n A 1 114 A 114 97 97 A A A . n A 1 115 A 115 98 98 A A A . n A 1 116 C 116 99 99 C C A . n A 1 117 C 117 100 100 C C A . n A 1 118 C 118 101 101 C C A . n A 1 119 A 119 102 102 A A A . n A 1 120 A 120 103 103 A A A . n A 1 121 C 121 104 104 C C A . n A 1 122 G 122 105 105 G G A . n A 1 123 U 123 106 106 U U A . n A 1 124 U 124 107 107 U U A . n A 1 125 C 125 108 108 C C A . n A 1 126 U 126 109 109 U U A . n A 1 127 C 127 110 110 C C A . n A 1 128 A 128 111 111 A A A . n A 1 129 A 129 112 112 A A A . n A 1 130 C 130 113 113 C C A . n A 1 131 A 131 114 114 A A A . n A 1 132 A 132 115 115 A A A . n A 1 133 U 133 116 116 U U A . n A 1 134 A 134 117 117 A A A . n A 1 135 G 135 118 118 G G A . n A 1 136 U 136 999 ? ? ? A . n A 1 137 G 137 1000 ? ? ? A . n A 1 138 A 138 1001 1001 A A A . n A 1 139 C 139 1002 1002 C C A . n A 1 140 C 140 1003 1003 C C A . n A 1 141 C 141 1004 1004 C C A . n A 1 142 A 142 1005 1005 A A A . n A 1 143 U 143 1006 1006 U U A . n A 1 144 U 144 1007 1007 U U A . n A 1 145 G 145 1008 1008 G G A . n A 1 146 C 146 1009 1009 C C A . n A 1 147 A 147 1010 1010 A A A . n A 1 148 C 148 1011 1011 C C A . n A 1 149 U 149 1012 1012 U U A . n A 1 150 C 150 1013 1013 C C A . n A 1 151 C 151 1014 1014 C C A . n A 1 152 G 152 1015 1015 G G A . n A 1 153 G 153 1016 1016 G G A . n A 1 154 G 154 1017 1017 G G A . n A 1 155 U 155 1018 1018 U U A . n # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9Z6I _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9Z6I _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9Z6I _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9Z6I _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 4.32 _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'REAL-SPACE (WEIGHTED MAP SUM AT ATOM CENTERS)' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _struct.entry_id 9Z6I _struct.title 'Cryo-EM structure of the open state of cIL RNA at 4.3 A resolution' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9Z6I _struct_keywords.text 'RNA, ribozyme, U1A, ribonucleoprotein (snRNP) complex' _struct_keywords.pdbx_keywords RNA # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9Z6I _struct_ref.pdbx_db_accession 9Z6I _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 9Z6I _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 155 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 9Z6I _struct_ref_seq.db_align_beg -7 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 1018 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg -7 _struct_ref_seq.pdbx_auth_seq_align_end 1018 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A C 2 N3 ? ? ? 1_555 A G 25 N1 ? ? A C -6 A G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 2 N4 ? ? ? 1_555 A G 25 O6 ? ? A C -6 A G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 2 O2 ? ? ? 1_555 A G 25 N2 ? ? A C -6 A G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 24 N1 ? ? A C -5 A G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 24 O6 ? ? A C -5 A G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 24 N2 ? ? A C -5 A G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 23 N3 ? ? A A -4 A U 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 23 O4 ? ? A A -4 A U 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 22 N3 ? ? A G -3 A C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 22 O2 ? ? A G -3 A C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 22 N4 ? ? A G -3 A C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 21 N1 ? ? A U -2 A A 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 21 N6 ? ? A U -2 A A 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 7 N1 ? ? ? 1_555 A U 20 N3 ? ? A A -1 A U 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 7 N6 ? ? ? 1_555 A U 20 O4 ? ? A A -1 A U 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 8 N1 ? ? ? 1_555 A C 19 N3 ? ? A G 1 A C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 8 N2 ? ? ? 1_555 A C 19 O2 ? ? A G 1 A C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 8 O6 ? ? ? 1_555 A C 19 N4 ? ? A G 1 A C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 9 N1 ? ? ? 1_555 A A 18 N1 ? ? A G 2 A A 11 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog20 hydrog ? ? A G 9 O6 ? ? ? 1_555 A A 18 N6 ? ? A G 2 A A 11 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog21 hydrog ? ? A A 13 N6 ? ? ? 1_555 A G 135 O6 ? ? A A 6 A G 118 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog22 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 135 N1 ? ? A C 7 A G 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 135 O6 ? ? A C 7 A G 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 135 N2 ? ? A C 7 A G 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A U 15 N3 ? ? ? 1_555 A A 134 N1 ? ? A U 8 A A 117 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A U 15 O4 ? ? ? 1_555 A A 134 N6 ? ? A U 8 A A 117 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A A 16 N1 ? ? ? 1_555 A U 133 N3 ? ? A A 9 A U 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A A 16 N6 ? ? ? 1_555 A U 133 O4 ? ? A A 9 A U 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A U 17 N3 ? ? ? 1_555 A A 132 N1 ? ? A U 10 A A 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A U 17 O4 ? ? ? 1_555 A A 132 N6 ? ? A U 10 A A 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A A 38 N6 ? ? ? 1_555 A U 101 O2 ? ? A A 31 A U 84 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog32 hydrog ? ? A A 39 N1 ? ? ? 1_555 A G 91 N2 ? ? A A 32 A G 74 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog33 hydrog ? ? A A 39 N6 ? ? ? 1_555 A G 91 N3 ? ? A A 32 A G 74 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog34 hydrog ? ? A C 42 N3 ? ? ? 1_555 A G 98 N1 ? ? A C 35 A G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 42 N4 ? ? ? 1_555 A G 98 O6 ? ? A C 35 A G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 42 O2 ? ? ? 1_555 A G 98 N2 ? ? A C 35 A G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A U 43 N3 ? ? ? 1_555 A A 97 N1 ? ? A U 36 A A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A U 43 O4 ? ? ? 1_555 A A 97 N6 ? ? A U 36 A A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 44 N1 ? ? ? 1_555 A C 96 N3 ? ? A G 37 A C 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 44 N2 ? ? ? 1_555 A C 96 O2 ? ? A G 37 A C 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 44 O6 ? ? ? 1_555 A C 96 N4 ? ? A G 37 A C 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 45 N3 ? ? ? 1_555 A G 95 N1 ? ? A C 38 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A C 45 N4 ? ? ? 1_555 A G 95 O6 ? ? A C 38 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 45 O2 ? ? ? 1_555 A G 95 N2 ? ? A C 38 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 46 N3 ? ? ? 1_555 A G 94 N1 ? ? A C 39 A G 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 46 N4 ? ? ? 1_555 A G 94 O6 ? ? A C 39 A G 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 46 O2 ? ? ? 1_555 A G 94 N2 ? ? A C 39 A G 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A C 47 N3 ? ? ? 1_555 A G 51 N1 ? ? A C 40 A G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A C 47 N4 ? ? ? 1_555 A G 51 O6 ? ? A C 40 A G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A C 47 O2 ? ? ? 1_555 A G 51 N2 ? ? A C 40 A G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 53 N1 ? ? ? 1_555 A C 130 N3 ? ? A G 46 A C 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 53 N2 ? ? ? 1_555 A C 130 O2 ? ? A G 46 A C 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 53 O6 ? ? ? 1_555 A C 130 N4 ? ? A G 46 A C 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A U 55 N3 ? ? ? 1_555 A A 129 N1 ? ? A U 48 A A 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A U 55 O4 ? ? ? 1_555 A A 129 N6 ? ? A U 48 A A 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A U 56 N3 ? ? ? 1_555 A A 128 N1 ? ? A U 49 A A 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A U 56 O4 ? ? ? 1_555 A A 128 N6 ? ? A U 49 A A 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A G 57 N1 ? ? ? 1_555 A C 127 N3 ? ? A G 50 A C 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A G 57 N2 ? ? ? 1_555 A C 127 O2 ? ? A G 50 A C 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 57 O6 ? ? ? 1_555 A C 127 N4 ? ? A G 50 A C 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A A 58 N1 ? ? ? 1_555 A U 126 N3 ? ? A A 51 A U 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A A 58 N6 ? ? ? 1_555 A U 126 O4 ? ? A A 51 A U 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A G 59 N1 ? ? ? 1_555 A C 125 N3 ? ? A G 52 A C 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A G 59 N2 ? ? ? 1_555 A C 125 O2 ? ? A G 52 A C 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A G 59 O6 ? ? ? 1_555 A C 125 N4 ? ? A G 52 A C 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A A 60 N1 ? ? ? 1_555 A U 124 N3 ? ? A A 53 A U 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A A 60 N6 ? ? ? 1_555 A U 124 O4 ? ? A A 53 A U 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A A 61 N1 ? ? ? 1_555 A U 123 N3 ? ? A A 54 A U 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A A 61 N6 ? ? ? 1_555 A U 123 O4 ? ? A A 54 A U 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A C 62 N3 ? ? ? 1_555 A G 86 N1 ? ? A C 55 A G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A C 62 N4 ? ? ? 1_555 A G 86 O6 ? ? A C 55 A G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A C 62 O2 ? ? ? 1_555 A G 86 N2 ? ? A C 55 A G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A A 63 N1 ? ? ? 1_555 A U 85 N3 ? ? A A 56 A U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A A 63 N6 ? ? ? 1_555 A U 85 O4 ? ? A A 56 A U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A U 64 N3 ? ? ? 1_555 A A 84 N1 ? ? A U 57 A A 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A U 64 O4 ? ? ? 1_555 A A 84 N6 ? ? A U 57 A A 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A A 88 N3 ? ? ? 1_555 A G 122 N2 ? ? A A 71 A G 105 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog78 hydrog ? ? A G 89 N1 ? ? ? 1_555 A C 102 N3 ? ? A G 72 A C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A G 89 N2 ? ? ? 1_555 A C 102 O2 ? ? A G 72 A C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A G 89 O6 ? ? ? 1_555 A C 102 N4 ? ? A G 72 A C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A A 90 N1 ? ? ? 1_555 A U 101 N3 ? ? A A 73 A U 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? A A 90 N6 ? ? ? 1_555 A U 101 O4 ? ? A A 73 A U 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A G 91 N1 ? ? ? 1_555 A C 100 N3 ? ? A G 74 A C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? A G 91 N2 ? ? ? 1_555 A C 100 O2 ? ? A G 74 A C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? A G 91 O6 ? ? ? 1_555 A C 100 N4 ? ? A G 74 A C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? A G 92 N1 ? ? ? 1_555 A C 99 N3 ? ? A G 75 A C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? A G 92 N2 ? ? ? 1_555 A C 99 O2 ? ? A G 75 A C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? A G 92 O6 ? ? ? 1_555 A C 99 N4 ? ? A G 75 A C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? A C 103 N3 ? ? ? 1_555 A G 122 N1 ? ? A C 86 A G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? A C 103 N4 ? ? ? 1_555 A G 122 O6 ? ? A C 86 A G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? A C 103 O2 ? ? ? 1_555 A G 122 N2 ? ? A C 86 A G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? A G 104 N1 ? ? ? 1_555 A C 121 N3 ? ? A G 87 A C 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? A G 104 N2 ? ? ? 1_555 A C 121 O2 ? ? A G 87 A C 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? A G 104 O6 ? ? ? 1_555 A C 121 N4 ? ? A G 87 A C 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? A G 105 N1 ? ? ? 1_555 A A 120 N1 ? ? A G 88 A A 103 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog96 hydrog ? ? A G 105 O6 ? ? ? 1_555 A A 120 N6 ? ? A G 88 A A 103 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog97 hydrog ? ? A U 106 N3 ? ? ? 1_555 A A 119 N1 ? ? A U 89 A A 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? A U 106 O4 ? ? ? 1_555 A A 119 N6 ? ? A U 89 A A 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? A G 107 N1 ? ? ? 1_555 A C 118 N3 ? ? A G 90 A C 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? A G 107 N2 ? ? ? 1_555 A C 118 O2 ? ? A G 90 A C 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? A G 107 O6 ? ? ? 1_555 A C 118 N4 ? ? A G 90 A C 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? A G 108 N1 ? ? ? 1_555 A C 117 N3 ? ? A G 91 A C 100 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? A G 108 N2 ? ? ? 1_555 A C 117 O2 ? ? A G 91 A C 100 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? A G 108 O6 ? ? ? 1_555 A C 117 N4 ? ? A G 91 A C 100 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? A G 109 N1 ? ? ? 1_555 A C 116 N3 ? ? A G 92 A C 99 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? A G 109 N2 ? ? ? 1_555 A C 116 O2 ? ? A G 92 A C 99 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? A G 109 O6 ? ? ? 1_555 A C 116 N4 ? ? A G 92 A C 99 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? A U 110 O2 ? ? ? 1_555 A A 115 N6 ? ? A U 93 A A 98 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog109 hydrog ? ? A U 110 O2 ? ? ? 1_555 A C 116 N4 ? ? A U 93 A C 99 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog110 hydrog ? ? A U 111 O2 ? ? ? 1_555 A A 115 N6 ? ? A U 94 A A 98 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog111 hydrog ? ? A A 138 N1 ? ? ? 1_555 A U 155 N3 ? ? A A 1001 A U 1018 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog112 hydrog ? ? A A 138 N6 ? ? ? 1_555 A U 155 O4 ? ? A A 1001 A U 1018 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog113 hydrog ? ? A C 139 N3 ? ? ? 1_555 A G 154 N1 ? ? A C 1002 A G 1017 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog114 hydrog ? ? A C 139 N4 ? ? ? 1_555 A G 154 O6 ? ? A C 1002 A G 1017 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog115 hydrog ? ? A C 139 O2 ? ? ? 1_555 A G 154 N2 ? ? A C 1002 A G 1017 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog116 hydrog ? ? A C 140 N3 ? ? ? 1_555 A G 153 N1 ? ? A C 1003 A G 1016 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog117 hydrog ? ? A C 140 N4 ? ? ? 1_555 A G 153 O6 ? ? A C 1003 A G 1016 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog118 hydrog ? ? A C 140 O2 ? ? ? 1_555 A G 153 N2 ? ? A C 1003 A G 1016 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog119 hydrog ? ? A C 141 N3 ? ? ? 1_555 A G 152 N1 ? ? A C 1004 A G 1015 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog120 hydrog ? ? A C 141 N4 ? ? ? 1_555 A G 152 O6 ? ? A C 1004 A G 1015 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog121 hydrog ? ? A C 141 O2 ? ? ? 1_555 A G 152 N2 ? ? A C 1004 A G 1015 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_entry_details.entry_id 9Z6I _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 "O3'" A U 57 ? ? P A A 1001 ? ? 1.60 2 1 P A A 67 ? ? "O3'" A U 1018 ? ? 1.60 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9Z6I _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space REAL _em_3d_fitting.ref_protocol 'AB INITIO MODEL' # _em_3d_fitting_list.id 1 _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.pdb_entry_id 3hhn _em_3d_fitting_list.pdb_chain_id ? _em_3d_fitting_list.pdb_chain_residue_range ? _em_3d_fitting_list.details ? _em_3d_fitting_list.chain_id ? _em_3d_fitting_list.chain_residue_range ? _em_3d_fitting_list.source_name PDB _em_3d_fitting_list.type 'experimental model' _em_3d_fitting_list.accession_code 3hhn _em_3d_fitting_list.initial_refinement_model_id 1 # _em_3d_reconstruction.entry_id 9Z6I _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ;The final map resolution was estimated based on the gold-standard Fourier Shell Correlation (FSC) using the 0.143 cut-off criterion as implemented in cryoSPARC ; _em_3d_reconstruction.resolution 4.32 _em_3d_reconstruction.resolution_method OTHER _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 59244 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details '10 mM HEPES, 75 mM NaCl, 5 mM MgCl2' _em_buffer.pH 7.4 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source 'MULTIPLE SOURCES' _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'cIL-U1A-Fab1R-PGA1-sfFab18 quaternary complex' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 9Z6I _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 900 _em_imaging.nominal_defocus_max 2500 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? _em_imaging.objective_aperture ? _em_imaging.microscope_serial_number ? _em_imaging.microscope_version ? # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material GOLD _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'Quantifoil R1.2/1.3' _em_sample_support.details ? _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 9Z6I _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 100 _em_vitrification.temp ? _em_vitrification.chamber_temperature 283 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9Z6I _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 9Z6I _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry C1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A U -7 ? A U 1 2 1 Y 1 A U 20 ? A U 27 3 1 Y 1 A A 21 ? A A 28 4 1 Y 1 A A 22 ? A A 29 5 1 Y 1 A U 23 ? A U 30 6 1 Y 1 A C 24 ? A C 31 7 1 Y 1 A A 25 ? A A 32 8 1 Y 1 A A 26 ? A A 33 9 1 Y 1 A A 27 ? A A 34 10 1 Y 1 A G 28 ? A G 35 11 1 Y 1 A A 57 A A A 65 12 1 Y 1 A A 57 B A A 66 13 1 Y 1 A C 57 C A C 67 14 1 Y 1 A C 57 D A C 68 15 1 Y 1 A C 57 E A C 69 16 1 Y 1 A A 57 F A A 70 17 1 Y 1 A U 57 G A U 71 18 1 Y 1 A U 57 H A U 72 19 1 Y 1 A G 57 I A G 73 20 1 Y 1 A C 57 J A C 74 21 1 Y 1 A A 57 K A A 75 22 1 Y 1 A C 57 L A C 76 23 1 Y 1 A U 57 M A U 77 24 1 Y 1 A C 57 N A C 78 25 1 Y 1 A C 57 O A C 79 26 1 Y 1 A G 57 P A G 80 27 1 Y 1 A G 57 Q A G 81 28 1 Y 1 A G 57 R A G 82 29 1 Y 1 A U 57 S A U 83 30 1 Y 1 A U 999 ? A U 136 31 1 Y 1 A G 1000 ? A G 137 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 U OP3 O N N 111 U P P N N 112 U OP1 O N N 113 U OP2 O N N 114 U "O5'" O N N 115 U "C5'" C N N 116 U "C4'" C N R 117 U "O4'" O N N 118 U "C3'" C N S 119 U "O3'" O N N 120 U "C2'" C N R 121 U "O2'" O N N 122 U "C1'" C N R 123 U N1 N N N 124 U C2 C N N 125 U O2 O N N 126 U N3 N N N 127 U C4 C N N 128 U O4 O N N 129 U C5 C N N 130 U C6 C N N 131 U HOP3 H N N 132 U HOP2 H N N 133 U "H5'" H N N 134 U "H5''" H N N 135 U "H4'" H N N 136 U "H3'" H N N 137 U "HO3'" H N N 138 U "H2'" H N N 139 U "HO2'" H N N 140 U "H1'" H N N 141 U H3 H N N 142 U H5 H N N 143 U H6 H N N 144 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 U OP3 P sing N N 116 U OP3 HOP3 sing N N 117 U P OP1 doub N N 118 U P OP2 sing N N 119 U P "O5'" sing N N 120 U OP2 HOP2 sing N N 121 U "O5'" "C5'" sing N N 122 U "C5'" "C4'" sing N N 123 U "C5'" "H5'" sing N N 124 U "C5'" "H5''" sing N N 125 U "C4'" "O4'" sing N N 126 U "C4'" "C3'" sing N N 127 U "C4'" "H4'" sing N N 128 U "O4'" "C1'" sing N N 129 U "C3'" "O3'" sing N N 130 U "C3'" "C2'" sing N N 131 U "C3'" "H3'" sing N N 132 U "O3'" "HO3'" sing N N 133 U "C2'" "O2'" sing N N 134 U "C2'" "C1'" sing N N 135 U "C2'" "H2'" sing N N 136 U "O2'" "HO2'" sing N N 137 U "C1'" N1 sing N N 138 U "C1'" "H1'" sing N N 139 U N1 C2 sing N N 140 U N1 C6 sing N N 141 U C2 O2 doub N N 142 U C2 N3 sing N N 143 U N3 C4 sing N N 144 U N3 H3 sing N N 145 U C4 O4 doub N N 146 U C4 C5 sing N N 147 U C5 C6 doub N N 148 U C5 H5 sing N N 149 U C6 H6 sing N N 150 # _em_admin.current_status REL _em_admin.deposition_date 2025-11-14 _em_admin.deposition_site RCSB _em_admin.entry_id 9Z6I _em_admin.last_update 2026-05-27 _em_admin.map_release_date 2026-05-27 _em_admin.title 'Cryo-EM structure of the open state of cIL RNA region at 4.3 A resolution' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 1 _em_entity_assembly_naturalsource.ncbi_tax_id 32630 _em_entity_assembly_naturalsource.organism 'synthetic construct' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_synthetic.cell ? _em_entity_assembly_synthetic.cellular_location ? _em_entity_assembly_synthetic.entity_assembly_id 1 _em_entity_assembly_synthetic.id 1 _em_entity_assembly_synthetic.ncbi_tax_id 32630 _em_entity_assembly_synthetic.organ ? _em_entity_assembly_synthetic.organelle ? _em_entity_assembly_synthetic.organism 'synthetic construct' _em_entity_assembly_synthetic.strain ? _em_entity_assembly_synthetic.tissue ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time 7.1 _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 60 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 2 _em_image_recording.num_real_images 10696 # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version _em_software.reference_DOI 'PARTICLE SELECTION' ? 1 1 ? ? cryoSPARC 3.3.1 ? 'MODEL REFINEMENT' ? 2 ? ? ? PHENIX 1.20.1_4487 ? 'IMAGE ACQUISITION' ? 3 1 1 1 ? ? ? MASKING ? 4 1 1 1 ? ? ? 'CTF CORRECTION' ? 5 1 ? ? ? ? ? 'LAYERLINE INDEXING' ? 6 1 1 1 ? ? ? 'DIFFRACTION INDEXING' ? 7 1 1 1 ? ? ? 'MODEL FITTING' ? 8 1 1 1 ? ? ? OTHER ? 9 1 1 1 ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? ? RECONSTRUCTION ? 13 1 ? ? cryoSPARC 3.3.1 ? 'VOLUME SELECTION' ? 14 1 1 1 ? ? ? 'SERIES ALIGNMENT' ? 15 1 1 1 ? ? ? 'MOLECULAR REPLACEMENT' ? 16 1 1 1 ? ? ? 'LATTICE DISTORTION CORRECTION' ? 17 1 1 1 ? ? ? 'SYMMETRY DETERMINATION' ? 18 1 1 1 ? ? ? 'CRYSTALLOGRAPHY MERGING' ? 19 1 1 1 ? ? ? # _em_specimen.concentration 3 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 9Z6I 'double helix' 9Z6I 'a-form double helix' 9Z6I 'hairpin loop' 9Z6I 'bulge loop' 9Z6I 'mismatched base pair' 9Z6I 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 2 1_555 A G 25 1_555 0.019 -0.641 1.168 -11.341 -23.004 -12.836 1 A_C-6:G18_A A -6 ? A 18 ? 19 1 1 A C 3 1_555 A G 24 1_555 0.116 -0.263 0.490 -5.193 -12.259 -5.264 2 A_C-5:G17_A A -5 ? A 17 ? 19 1 1 A A 4 1_555 A U 23 1_555 0.088 -0.035 0.053 1.839 -7.014 -13.291 3 A_A-4:U16_A A -4 ? A 16 ? 20 1 1 A G 5 1_555 A C 22 1_555 -0.227 -0.225 0.235 10.093 -1.873 -6.128 4 A_G-3:C15_A A -3 ? A 15 ? 19 1 1 A U 6 1_555 A A 21 1_555 0.140 -0.191 -0.229 14.803 -11.554 -6.674 5 A_U-2:A14_A A -2 ? A 14 ? 20 1 1 A A 7 1_555 A U 20 1_555 -0.147 -0.244 -0.141 -3.832 -10.930 2.501 6 A_A-1:U13_A A -1 ? A 13 ? 20 1 1 A G 8 1_555 A C 19 1_555 -0.347 -0.295 0.092 -22.689 -20.359 -4.789 7 A_G1:C12_A A 1 ? A 12 ? 19 1 1 A G 9 1_555 A A 18 1_555 0.205 1.321 0.339 -26.837 -12.343 -23.736 8 A_G2:A11_A A 2 ? A 11 ? 8 1 1 A A 132 1_555 A U 17 1_555 -0.036 -0.106 -0.195 -12.710 -7.077 -0.994 9 A_A115:U10_A A 115 ? A 10 ? 20 1 1 A U 133 1_555 A A 16 1_555 0.043 -0.154 0.113 -6.811 1.807 -4.077 10 A_U116:A9_A A 116 ? A 9 ? 20 1 1 A A 134 1_555 A U 15 1_555 0.021 -0.094 -0.091 -0.149 -16.819 -6.202 11 A_A117:U8_A A 117 ? A 8 ? 20 1 1 A G 135 1_555 A C 14 1_555 -0.081 -0.232 0.752 3.564 -15.358 -6.344 12 A_G118:C7_A A 118 ? A 7 ? 19 1 1 A G 51 1_555 A C 47 1_555 -0.300 -0.203 -0.525 -14.497 -0.839 -1.239 13 A_G44:C40_A A 44 ? A 40 ? 19 1 1 A G 94 1_555 A C 46 1_555 -0.177 -0.215 -0.142 2.404 4.734 -2.869 14 A_G77:C39_A A 77 ? A 39 ? 19 1 1 A G 95 1_555 A C 45 1_555 -0.317 -0.237 -0.264 -4.261 -6.323 0.206 15 A_G78:C38_A A 78 ? A 38 ? 19 1 1 A C 96 1_555 A G 44 1_555 0.183 -0.261 -0.086 -1.355 -2.214 -1.446 16 A_C79:G37_A A 79 ? A 37 ? 19 1 1 A A 97 1_555 A U 43 1_555 0.045 -0.150 -0.167 -6.803 -4.559 -2.796 17 A_A80:U36_A A 80 ? A 36 ? 20 1 1 A G 98 1_555 A C 42 1_555 -0.121 -0.118 -0.170 -12.495 -9.512 -1.403 18 A_G81:C35_A A 81 ? A 35 ? 19 1 1 A C 99 1_555 A G 92 1_555 0.116 -0.158 -0.012 -9.594 7.043 -1.205 19 A_C82:G75_A A 82 ? A 75 ? 19 1 1 A C 100 1_555 A G 91 1_555 0.207 -0.172 -0.073 -3.027 -3.039 -2.012 20 A_C83:G74_A A 83 ? A 74 ? 19 1 1 A U 101 1_555 A A 90 1_555 0.069 -0.179 -0.193 6.831 -6.116 0.556 21 A_U84:A73_A A 84 ? A 73 ? 20 1 1 A C 102 1_555 A G 89 1_555 0.201 -0.174 -0.111 4.531 -5.132 -0.626 22 A_C85:G72_A A 85 ? A 72 ? 19 1 1 A C 103 1_555 A G 122 1_555 0.194 -0.198 -0.144 4.309 -7.457 0.112 23 A_C86:G105_A A 86 ? A 105 ? 19 1 1 A G 104 1_555 A C 121 1_555 -0.279 -0.187 -0.092 -5.748 -9.314 -0.064 24 A_G87:C104_A A 87 ? A 104 ? 19 1 1 A G 105 1_555 A A 120 1_555 -0.127 1.342 -0.564 1.569 -11.733 -7.357 25 A_G88:A103_A A 88 ? A 103 ? 8 1 1 A U 106 1_555 A A 119 1_555 -0.019 -0.191 -0.274 1.832 -6.835 -8.700 26 A_U89:A102_A A 89 ? A 102 ? 20 1 1 A G 107 1_555 A C 118 1_555 -0.156 -0.246 -0.462 -19.600 -4.657 -1.560 27 A_G90:C101_A A 90 ? A 101 ? 19 1 1 A G 108 1_555 A C 117 1_555 0.053 0.316 0.236 19.614 4.922 -3.434 28 A_G91:C100_A A 91 ? A 100 ? 19 1 1 A G 109 1_555 A C 116 1_555 0.378 -0.509 -2.200 -8.544 -4.116 -2.365 29 A_G92:C99_A A 92 ? A 99 ? 19 1 1 A U 111 1_555 A A 115 1_555 6.924 -3.253 1.242 14.824 18.546 29.459 30 A_U94:A98_A A 94 ? A 98 ? ? ? 1 A G 53 1_555 A C 130 1_555 -0.266 -0.241 -0.130 -2.604 -0.298 0.044 31 A_G46:C113_A A 46 ? A 113 ? 19 1 1 A U 55 1_555 A A 129 1_555 0.145 -0.269 -0.172 5.729 0.328 2.586 32 A_U48:A112_A A 48 ? A 112 ? 20 1 1 A U 56 1_555 A A 128 1_555 0.028 -0.297 -0.216 2.261 -0.235 2.262 33 A_U49:A111_A A 49 ? A 111 ? 20 1 1 A G 57 1_555 A C 127 1_555 -0.137 -0.233 -0.227 -8.072 -4.886 -1.264 34 A_G50:C110_A A 50 ? A 110 ? 19 1 1 A A 58 1_555 A U 126 1_555 0.013 -0.198 -0.279 -11.087 -6.046 -1.575 35 A_A51:U109_A A 51 ? A 109 ? 20 1 1 A G 59 1_555 A C 125 1_555 -0.260 -0.221 -0.115 -4.599 -3.811 -3.900 36 A_G52:C108_A A 52 ? A 108 ? 19 1 1 A A 60 1_555 A U 124 1_555 -0.115 -0.243 -0.036 -0.143 -9.273 1.834 37 A_A53:U107_A A 53 ? A 107 ? 20 1 1 A A 61 1_555 A U 123 1_555 -0.177 -0.307 -0.170 -1.204 0.057 5.672 38 A_A54:U106_A A 54 ? A 106 ? 20 1 1 A C 62 1_555 A G 86 1_555 0.122 -0.170 -0.079 -5.487 -0.218 -0.016 39 A_C55:G69_A A 55 ? A 69 ? 19 1 1 A A 63 1_555 A U 85 1_555 -0.217 -0.256 -0.086 -1.548 -9.738 4.336 40 A_A56:U68_A A 56 ? A 68 ? 20 1 1 A U 64 1_555 A A 84 1_555 0.090 -0.223 -0.113 1.739 -5.895 2.046 41 A_U57:A67_A A 57 ? A 67 ? 20 1 1 A A 138 1_555 A U 155 1_555 -0.051 -0.323 0.037 -4.584 -8.593 7.176 42 A_A1001:U1018_A A 1001 ? A 1018 ? 20 1 1 A C 139 1_555 A G 154 1_555 0.137 -0.135 -0.252 14.415 -9.550 -1.125 43 A_C1002:G1017_A A 1002 ? A 1017 ? 19 1 1 A C 140 1_555 A G 153 1_555 0.219 -0.207 0.005 0.716 -4.372 1.296 44 A_C1003:G1016_A A 1003 ? A 1016 ? 19 1 1 A C 141 1_555 A G 152 1_555 0.450 -0.261 -0.063 0.778 -4.131 1.065 45 A_C1004:G1015_A A 1004 ? A 1015 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 2 1_555 A G 25 1_555 A C 3 1_555 A G 24 1_555 0.059 -1.141 3.003 5.128 -8.812 36.269 -0.667 0.550 3.165 -13.822 -8.043 37.628 1 AA_C-6C-5:G17G18_AA A -6 ? A 18 ? A -5 ? A 17 ? 1 A C 3 1_555 A G 24 1_555 A A 4 1_555 A U 23 1_555 -0.477 -0.928 2.990 3.126 3.417 32.794 -2.142 1.308 2.825 6.015 -5.502 33.110 2 AA_C-5A-4:U16G17_AA A -5 ? A 17 ? A -4 ? A 16 ? 1 A A 4 1_555 A U 23 1_555 A G 5 1_555 A C 22 1_555 -0.329 -1.043 3.412 -8.124 8.826 33.460 -3.027 -0.671 3.044 14.753 13.579 35.488 3 AA_A-4G-3:C15U16_AA A -4 ? A 16 ? A -3 ? A 15 ? 1 A G 5 1_555 A C 22 1_555 A U 6 1_555 A A 21 1_555 0.737 -1.217 3.157 0.363 5.399 38.006 -2.485 -1.078 2.970 8.240 -0.553 38.375 4 AA_G-3U-2:A14C15_AA A -3 ? A 15 ? A -2 ? A 14 ? 1 A U 6 1_555 A A 21 1_555 A A 7 1_555 A U 20 1_555 1.036 -1.800 3.631 -3.569 9.138 36.624 -3.982 -2.069 3.002 14.231 5.558 37.872 5 AA_U-2A-1:U13A14_AA A -2 ? A 14 ? A -1 ? A 13 ? 1 A A 7 1_555 A U 20 1_555 A G 8 1_555 A C 19 1_555 -0.389 -1.984 3.740 2.789 2.177 37.675 -3.374 1.002 3.587 3.362 -4.308 37.835 6 AA_A-1G1:C12U13_AA A -1 ? A 13 ? A 1 ? A 12 ? 1 A G 8 1_555 A C 19 1_555 A G 9 1_555 A A 18 1_555 -0.945 -1.767 3.201 2.492 -0.697 35.386 -2.801 1.907 3.163 -1.144 -4.093 35.478 7 AA_G1G2:A11C12_AA A 1 ? A 12 ? A 2 ? A 11 ? 1 A G 9 1_555 A A 18 1_555 A A 132 1_555 A U 17 1_555 -1.278 -2.402 2.842 13.324 11.837 56.890 -2.883 1.805 2.031 12.101 -13.621 59.393 8 AA_G2A115:U10A11_AA A 2 ? A 11 ? A 115 ? A 10 ? 1 A A 132 1_555 A U 17 1_555 A U 133 1_555 A A 16 1_555 -0.948 -1.522 3.192 0.144 12.670 32.211 -4.311 1.616 2.434 21.811 -0.247 34.552 9 AA_A115U116:A9U10_AA A 115 ? A 10 ? A 116 ? A 9 ? 1 A U 133 1_555 A A 16 1_555 A A 134 1_555 A U 15 1_555 0.029 -0.898 3.031 3.560 14.080 29.421 -3.708 0.484 2.356 25.834 -6.531 32.740 10 AA_U116A117:U8A9_AA A 116 ? A 9 ? A 117 ? A 8 ? 1 A A 134 1_555 A U 15 1_555 A G 135 1_555 A C 14 1_555 -0.141 -0.705 3.152 -6.310 7.265 33.574 -2.218 -0.671 2.919 12.268 10.654 34.888 11 AA_A117G118:C7U8_AA A 117 ? A 8 ? A 118 ? A 7 ? 1 A G 51 1_555 A C 47 1_555 A G 94 1_555 A C 46 1_555 -0.172 -1.616 2.860 -2.021 -4.135 25.867 -2.536 -0.120 3.080 -9.145 4.470 26.266 12 AA_G44G77:C39C40_AA A 44 ? A 40 ? A 77 ? A 39 ? 1 A G 94 1_555 A C 46 1_555 A G 95 1_555 A C 45 1_555 -0.030 -2.097 3.246 -1.633 11.310 33.645 -4.921 -0.164 2.436 18.875 2.725 35.480 13 AA_G77G78:C38C39_AA A 77 ? A 39 ? A 78 ? A 38 ? 1 A G 95 1_555 A C 45 1_555 A C 96 1_555 A G 44 1_555 -0.440 -1.742 3.080 -0.977 5.527 35.897 -3.493 0.582 2.800 8.901 1.573 36.319 14 AA_G78C79:G37C38_AA A 78 ? A 38 ? A 79 ? A 37 ? 1 A C 96 1_555 A G 44 1_555 A A 97 1_555 A U 43 1_555 0.277 -1.666 3.213 1.961 12.912 32.526 -4.511 -0.197 2.411 21.980 -3.338 34.984 15 AA_C79A80:U36G37_AA A 79 ? A 37 ? A 80 ? A 36 ? 1 A A 97 1_555 A U 43 1_555 A G 98 1_555 A C 42 1_555 0.443 -1.987 3.351 2.173 6.282 30.269 -4.895 -0.423 2.913 11.852 -4.099 30.974 16 AA_A80G81:C35U36_AA A 80 ? A 36 ? A 81 ? A 35 ? 1 A G 98 1_555 A C 42 1_555 A C 99 1_555 A G 92 1_555 1.666 -0.812 3.263 1.975 -4.513 45.424 -0.645 -1.970 3.391 -5.824 -2.548 45.676 17 AA_G81C82:G75C35_AA A 81 ? A 35 ? A 82 ? A 75 ? 1 A C 99 1_555 A G 92 1_555 A C 100 1_555 A G 91 1_555 -0.117 -1.529 3.167 0.215 13.470 27.802 -5.149 0.257 2.206 26.176 -0.417 30.836 18 AA_C82C83:G74G75_AA A 82 ? A 75 ? A 83 ? A 74 ? 1 A C 100 1_555 A G 91 1_555 A U 101 1_555 A A 90 1_555 0.222 -1.583 2.912 -1.020 6.997 29.217 -4.252 -0.602 2.466 13.620 1.985 30.042 19 AA_C83U84:A73G74_AA A 83 ? A 74 ? A 84 ? A 73 ? 1 A U 101 1_555 A A 90 1_555 A C 102 1_555 A G 89 1_555 0.039 -1.964 3.172 -1.466 8.467 32.855 -4.584 -0.279 2.596 14.659 2.539 33.930 20 AA_U84C85:G72A73_AA A 84 ? A 73 ? A 85 ? A 72 ? 1 A C 102 1_555 A G 89 1_555 A C 103 1_555 A G 122 1_555 0.200 -1.556 3.116 0.473 5.701 33.164 -3.539 -0.274 2.819 9.896 -0.821 33.640 21 AA_C85C86:G105G72_AA A 85 ? A 72 ? A 86 ? A 105 ? 1 A C 103 1_555 A G 122 1_555 A G 104 1_555 A C 121 1_555 0.184 -1.675 3.283 0.101 12.767 31.338 -4.761 -0.301 2.435 22.501 -0.178 33.779 22 AA_C86G87:C104G105_AA A 86 ? A 105 ? A 87 ? A 104 ? 1 A G 104 1_555 A C 121 1_555 A G 105 1_555 A A 120 1_555 -0.309 -1.210 3.059 5.082 3.540 28.023 -3.165 1.660 2.790 7.199 -10.336 28.686 23 AA_G87G88:A103C104_AA A 87 ? A 104 ? A 88 ? A 103 ? 1 A G 105 1_555 A A 120 1_555 A U 106 1_555 A A 119 1_555 0.064 -2.227 3.211 -2.053 8.803 25.937 -6.588 -0.577 2.331 18.897 4.407 27.441 24 AA_G88U89:A102A103_AA A 88 ? A 103 ? A 89 ? A 102 ? 1 A U 106 1_555 A A 119 1_555 A G 107 1_555 A C 118 1_555 0.470 -2.002 3.690 2.271 20.787 38.690 -4.654 -0.415 2.388 28.949 -3.162 43.788 25 AA_U89G90:C101A102_AA A 89 ? A 102 ? A 90 ? A 101 ? 1 A G 107 1_555 A C 118 1_555 A G 108 1_555 A C 117 1_555 0.297 0.142 2.501 -7.033 9.518 21.262 -1.948 -2.395 2.162 23.586 17.429 24.301 26 AA_G90G91:C100C101_AA A 90 ? A 101 ? A 91 ? A 100 ? 1 A G 108 1_555 A C 117 1_555 A G 109 1_555 A C 116 1_555 -0.193 -1.807 4.378 10.170 11.654 34.484 -4.685 1.946 3.424 18.547 -16.186 37.698 27 AA_G91G92:C99C100_AA A 91 ? A 100 ? A 92 ? A 99 ? 1 A G 109 1_555 A C 116 1_555 A U 111 1_555 A A 115 1_555 -0.134 0.722 4.374 10.394 23.744 71.805 -0.398 0.540 4.358 19.628 -8.593 75.744 28 AA_G92U94:A98C99_AA A 92 ? A 99 ? A 94 ? A 98 ? 1 A G 53 1_555 A C 130 1_555 A U 55 1_555 A A 129 1_555 -0.538 -1.151 3.091 -0.444 4.859 46.115 -1.844 0.649 2.966 6.182 0.565 46.358 29 AA_G46U48:A112C113_AA A 46 ? A 113 ? A 48 ? A 112 ? 1 A U 55 1_555 A A 129 1_555 A U 56 1_555 A A 128 1_555 -0.267 -1.838 3.392 0.372 4.828 33.353 -3.954 0.521 3.101 8.356 -0.644 33.693 30 AA_U48U49:A111A112_AA A 48 ? A 112 ? A 49 ? A 111 ? 1 A U 56 1_555 A A 128 1_555 A G 57 1_555 A C 127 1_555 -0.140 -1.784 3.545 1.368 5.390 30.959 -4.339 0.524 3.188 9.996 -2.538 31.443 31 AA_U49G50:C110A111_AA A 49 ? A 111 ? A 50 ? A 110 ? 1 A G 57 1_555 A C 127 1_555 A A 58 1_555 A U 126 1_555 -0.058 -1.717 3.280 1.562 6.495 33.833 -3.861 0.330 2.905 11.027 -2.652 34.467 32 AA_G50A51:U109C110_AA A 50 ? A 110 ? A 51 ? A 109 ? 1 A A 58 1_555 A U 126 1_555 A G 59 1_555 A C 125 1_555 0.225 -1.618 3.072 1.284 3.889 30.444 -3.749 -0.195 2.855 7.365 -2.432 30.712 33 AA_A51G52:C108U109_AA A 51 ? A 109 ? A 52 ? A 108 ? 1 A G 59 1_555 A C 125 1_555 A A 60 1_555 A U 124 1_555 -0.291 -1.443 3.071 -0.092 1.998 33.819 -2.774 0.485 2.984 3.430 0.158 33.877 34 AA_G52A53:U107C108_AA A 52 ? A 108 ? A 53 ? A 107 ? 1 A A 60 1_555 A U 124 1_555 A A 61 1_555 A U 123 1_555 0.927 -0.588 3.234 3.146 -1.186 34.928 -0.798 -1.065 3.320 -1.970 -5.227 35.085 35 AA_A53A54:U106U107_AA A 53 ? A 107 ? A 54 ? A 106 ? 1 A A 61 1_555 A U 123 1_555 A C 62 1_555 A G 86 1_555 1.241 -1.549 3.282 1.894 3.990 45.539 -2.337 -1.433 3.189 5.140 -2.440 45.741 36 AA_A54C55:G69U106_AA A 54 ? A 106 ? A 55 ? A 69 ? 1 A C 62 1_555 A G 86 1_555 A A 63 1_555 A U 85 1_555 0.268 -1.376 2.971 -0.867 17.063 31.384 -4.252 -0.540 1.978 29.009 1.474 35.631 37 AA_C55A56:U68G69_AA A 55 ? A 69 ? A 56 ? A 68 ? 1 A A 63 1_555 A U 85 1_555 A U 64 1_555 A A 84 1_555 -0.164 -1.438 3.137 -0.336 4.311 33.335 -3.145 0.232 2.935 7.476 0.582 33.607 38 AA_A56U57:A67U68_AA A 56 ? A 68 ? A 57 ? A 67 ? 1 A U 64 1_555 A A 84 1_555 A A 138 1_555 A U 155 1_555 0.500 -1.537 3.231 -0.033 9.865 29.043 -4.687 -0.953 2.581 18.992 0.063 30.639 39 AA_U57A1001:U1018A67_AA A 57 ? A 67 ? A 1001 ? A 1018 ? 1 A A 138 1_555 A U 155 1_555 A C 139 1_555 A G 154 1_555 0.448 -0.669 2.734 2.542 3.382 29.904 -1.854 -0.431 2.672 6.513 -4.894 30.195 40 AA_A1001C1002:G1017U1018_AA A 1001 ? A 1018 ? A 1002 ? A 1017 ? 1 A C 139 1_555 A G 154 1_555 A C 140 1_555 A G 153 1_555 -0.147 -2.023 3.496 -4.608 4.413 34.936 -3.987 -0.457 3.218 7.275 7.597 35.496 41 AA_C1002C1003:G1016G1017_AA A 1002 ? A 1017 ? A 1003 ? A 1016 ? 1 A C 140 1_555 A G 153 1_555 A C 141 1_555 A G 152 1_555 0.161 -1.764 3.149 0.831 1.088 33.611 -3.218 -0.148 3.095 1.881 -1.436 33.638 42 AA_C1003C1004:G1015G1016_AA A 1003 ? A 1016 ? A 1004 ? A 1015 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3hhn _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 9Z6I _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O P # loop_ #