HEADER TRANSPORT PROTEIN 20-NOV-25 9ZBE TITLE REVISED STRUCTURE OF A COMPLEX BETWEEN THE SNARE NYV1 AND THE HOPS TITLE 2 VPS33-VPS16 SUBCOMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: SM PROTEIN VPS33; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: VPS16; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: NYV1 SNARE MOTIF; COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCHAETOIDES THERMOPHILA DSM 1495; SOURCE 3 ORGANISM_TAXID: 759272; SOURCE 4 GENE: CTHT_0057760; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: THERMOCHAETOIDES THERMOPHILA DSM 1495; SOURCE 9 ORGANISM_TAXID: 759272; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 12 MOL_ID: 3; SOURCE 13 ORGANISM_SCIENTIFIC: THERMOCHAETOIDES THERMOPHILA DSM 1495; SOURCE 14 ORGANISM_TAXID: 759272; SOURCE 15 GENE: CTHT_0032860; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MEMBRANE TRAFFICKING, SM PROTEIN, HOPS COMPLEX, THERMOPHILE, SNARE KEYWDS 2 DOMAIN, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.E.STANTON,P.D.JEFFREY,R.W.BAKER,F.M.HUGHSON REVDAT 1 03-JUN-26 9ZBE 0 JRNL AUTH A.E.STANTON,I.MIDURA,N.SHIRAI,N.SU,P.D.JEFFREY,F.M.HUGHSON JRNL TITL STRUCTURAL CHARACTERIZATION OF INTERMEDIATES IN SM-CATALYZED JRNL TITL 2 SNARE ASSEMBLY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.W.BAKER,P.D.JEFFREY,M.ZICK,B.P.PHILLIPS,W.T.WICKNER, REMARK 1 AUTH 2 F.M.HUGHSON REMARK 1 TITL A DIRECT ROLE FOR THE SEC1/MUNC18-FAMILY PROTEIN VPS33 AS A REMARK 1 TITL 2 TEMPLATE FOR SNARE ASSEMBLY. REMARK 1 REF SCIENCE V. 349 1111 2015 REMARK 1 REFN ESSN 1095-9203 REMARK 1 PMID 26339030 REMARK 1 DOI 10.1126/SCIENCE.AAC7906 REMARK 2 REMARK 2 RESOLUTION. 3.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17_3644 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.47 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 37318 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1895 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.4700 - 7.3500 1.00 2803 143 0.1703 0.1847 REMARK 3 2 7.3500 - 5.8300 1.00 2668 140 0.2105 0.2476 REMARK 3 3 5.8300 - 5.1000 0.99 2615 162 0.1743 0.2131 REMARK 3 4 5.1000 - 4.6300 0.99 2585 147 0.1426 0.1897 REMARK 3 5 4.6300 - 4.3000 0.99 2590 163 0.1507 0.2082 REMARK 3 6 4.3000 - 4.0500 0.98 2543 128 0.1560 0.1886 REMARK 3 7 4.0500 - 3.8400 0.98 2565 107 0.1556 0.1994 REMARK 3 8 3.8400 - 3.6800 0.98 2549 139 0.1725 0.2085 REMARK 3 9 3.6800 - 3.5300 0.98 2504 137 0.1920 0.2542 REMARK 3 10 3.5300 - 3.4100 0.97 2512 106 0.2191 0.2948 REMARK 3 11 3.4100 - 3.3100 0.95 2459 133 0.2371 0.2801 REMARK 3 12 3.3100 - 3.2100 0.94 2424 142 0.2673 0.3399 REMARK 3 13 3.2100 - 3.1300 0.92 2342 123 0.2982 0.3395 REMARK 3 14 3.1300 - 3.0500 0.88 2264 125 0.3285 0.3979 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.376 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.372 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 77.89 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 116.4 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6850 REMARK 3 ANGLE : 0.970 9230 REMARK 3 CHIRALITY : 0.051 1051 REMARK 3 PLANARITY : 0.005 1200 REMARK 3 DIHEDRAL : 20.295 2593 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 215 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.8307 38.0606 5.4714 REMARK 3 T TENSOR REMARK 3 T11: 0.8835 T22: 1.2966 REMARK 3 T33: 0.8445 T12: -0.2318 REMARK 3 T13: 0.1299 T23: 0.2213 REMARK 3 L TENSOR REMARK 3 L11: 3.3206 L22: 4.2890 REMARK 3 L33: 2.2748 L12: 0.7921 REMARK 3 L13: 0.0273 L23: -0.3274 REMARK 3 S TENSOR REMARK 3 S11: 0.0398 S12: -0.7083 S13: -0.5822 REMARK 3 S21: 0.5448 S22: 0.0738 S23: 1.0163 REMARK 3 S31: 0.6861 S32: -0.9275 S33: -0.0806 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 216 THROUGH 411 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.7774 33.4251 -19.3829 REMARK 3 T TENSOR REMARK 3 T11: 0.8511 T22: 0.8696 REMARK 3 T33: 0.8005 T12: -0.0084 REMARK 3 T13: -0.0121 T23: -0.1764 REMARK 3 L TENSOR REMARK 3 L11: 2.6494 L22: 2.5144 REMARK 3 L33: 2.5999 L12: -0.9488 REMARK 3 L13: 0.8479 L23: -1.0756 REMARK 3 S TENSOR REMARK 3 S11: 0.1798 S12: 0.3334 S13: -0.8870 REMARK 3 S21: -0.7318 S22: -0.1676 S23: 0.2194 REMARK 3 S31: 0.9849 S32: 0.2395 S33: 0.0204 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 412 THROUGH 659 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.5693 53.3033 -11.6724 REMARK 3 T TENSOR REMARK 3 T11: 0.4565 T22: 0.6273 REMARK 3 T33: 0.3484 T12: -0.0183 REMARK 3 T13: 0.0210 T23: -0.0652 REMARK 3 L TENSOR REMARK 3 L11: 5.2401 L22: 2.4807 REMARK 3 L33: 3.8265 L12: -1.2621 REMARK 3 L13: 1.2920 L23: -0.9110 REMARK 3 S TENSOR REMARK 3 S11: 0.0167 S12: 0.2573 S13: -0.1765 REMARK 3 S21: -0.0664 S22: -0.0034 S23: -0.1137 REMARK 3 S31: 0.1901 S32: 0.1354 S33: 0.0532 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 524 THROUGH 618 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.3841 62.4096 11.0851 REMARK 3 T TENSOR REMARK 3 T11: 0.5098 T22: 1.3440 REMARK 3 T33: 0.6151 T12: -0.0854 REMARK 3 T13: 0.0468 T23: 0.0326 REMARK 3 L TENSOR REMARK 3 L11: 3.2833 L22: 4.7391 REMARK 3 L33: 9.1421 L12: -2.8534 REMARK 3 L13: 0.5916 L23: -3.0270 REMARK 3 S TENSOR REMARK 3 S11: -0.1381 S12: -0.2511 S13: -0.1011 REMARK 3 S21: 0.0031 S22: -0.0012 S23: -0.0221 REMARK 3 S31: 0.4527 S32: -0.2974 S33: 0.1517 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 619 THROUGH 730 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.3474 66.0508 -28.3229 REMARK 3 T TENSOR REMARK 3 T11: 0.7149 T22: 1.4326 REMARK 3 T33: 0.6117 T12: 0.0621 REMARK 3 T13: -0.0507 T23: 0.2754 REMARK 3 L TENSOR REMARK 3 L11: 4.1745 L22: 3.1534 REMARK 3 L33: 7.1627 L12: -0.2982 REMARK 3 L13: -0.2505 L23: 2.4112 REMARK 3 S TENSOR REMARK 3 S11: 0.0876 S12: 0.6176 S13: 0.3001 REMARK 3 S21: -0.6462 S22: -0.0727 S23: 0.5455 REMARK 3 S31: -0.7428 S32: -1.2672 S33: 0.0669 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 165 THROUGH 178 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.0853 -3.6442 -29.4641 REMARK 3 T TENSOR REMARK 3 T11: 1.4390 T22: 0.5718 REMARK 3 T33: 2.0529 T12: -0.3930 REMARK 3 T13: -0.2740 T23: -0.3676 REMARK 3 L TENSOR REMARK 3 L11: 0.0316 L22: 0.0897 REMARK 3 L33: 3.1118 L12: -0.0025 REMARK 3 L13: 0.2420 L23: -0.3644 REMARK 3 S TENSOR REMARK 3 S11: 0.0654 S12: -0.5265 S13: 0.9099 REMARK 3 S21: 1.3740 S22: -0.4176 S23: 0.8424 REMARK 3 S31: -1.7157 S32: 0.0976 S33: 0.3502 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 179 THROUGH 202 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2396 26.8016 -33.1761 REMARK 3 T TENSOR REMARK 3 T11: 1.7201 T22: 1.7074 REMARK 3 T33: 1.7008 T12: -0.2418 REMARK 3 T13: 0.1345 T23: -0.1716 REMARK 3 L TENSOR REMARK 3 L11: 3.7578 L22: 6.3201 REMARK 3 L33: 8.8531 L12: -4.3148 REMARK 3 L13: 0.0808 L23: 3.3625 REMARK 3 S TENSOR REMARK 3 S11: 1.1852 S12: 0.6134 S13: -0.3286 REMARK 3 S21: -1.8240 S22: -0.5544 S23: 0.5687 REMARK 3 S31: 0.4335 S32: -0.5056 S33: -0.6858 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9ZBE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-NOV-25. REMARK 100 THE DEPOSITION ID IS D_1000302073. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38474 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.050 REMARK 200 RESOLUTION RANGE LOW (A) : 49.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.19 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.73400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS-HCL BUFFER, 0.8M NA TARTRATE, REMARK 280 0.5% W/V PEG 5000 MONOMETHYL ETHER, PH 8.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 50.51500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 129.46800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 50.51500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 129.46800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 PRO A 3 REMARK 465 ALA A 276 REMARK 465 PRO A 277 REMARK 465 ALA A 278 REMARK 465 GLN A 279 REMARK 465 SER A 280 REMARK 465 ALA A 281 REMARK 465 ALA A 282 REMARK 465 SER A 283 REMARK 465 THR A 284 REMARK 465 SER A 285 REMARK 465 THR A 286 REMARK 465 ALA A 287 REMARK 465 VAL A 288 REMARK 465 PRO A 289 REMARK 465 THR A 290 REMARK 465 ASN A 291 REMARK 465 SER A 292 REMARK 465 SER A 293 REMARK 465 GLN A 294 REMARK 465 SER A 295 REMARK 465 GLY A 544 REMARK 465 SER A 545 REMARK 465 GLY A 546 REMARK 465 THR A 547 REMARK 465 VAL A 548 REMARK 465 ILE A 549 REMARK 465 ALA A 550 REMARK 465 ALA A 551 REMARK 465 GLY A 552 REMARK 465 PRO A 553 REMARK 465 VAL A 554 REMARK 465 ALA A 555 REMARK 465 GLU A 584 REMARK 465 ASP A 585 REMARK 465 LYS A 586 REMARK 465 ALA A 587 REMARK 465 VAL A 588 REMARK 465 LYS A 589 REMARK 465 ALA A 590 REMARK 465 ARG A 591 REMARK 465 ALA A 592 REMARK 465 LEU A 593 REMARK 465 LEU A 594 REMARK 465 SER A 595 REMARK 465 GLY A 596 REMARK 465 SER A 597 REMARK 465 SER A 598 REMARK 465 THR A 660 REMARK 465 VAL A 661 REMARK 465 THR A 662 REMARK 465 THR A 663 REMARK 465 ALA A 664 REMARK 465 ALA A 665 REMARK 465 ALA A 666 REMARK 465 GLN A 667 REMARK 465 MET B 502 REMARK 465 GLY B 503 REMARK 465 SER B 504 REMARK 465 SER B 505 REMARK 465 PHE B 506 REMARK 465 GLU B 507 REMARK 465 VAL B 508 REMARK 465 ILE B 509 REMARK 465 ALA B 510 REMARK 465 ARG B 511 REMARK 465 THR B 512 REMARK 465 ALA B 513 REMARK 465 TYR B 514 REMARK 465 GLU B 515 REMARK 465 GLU B 516 REMARK 465 GLY B 517 REMARK 465 ARG B 518 REMARK 465 THR B 519 REMARK 465 ARG B 520 REMARK 465 LEU B 521 REMARK 465 ALA B 522 REMARK 465 THR B 523 REMARK 465 GLY C 146 REMARK 465 SER C 147 REMARK 465 VAL C 148 REMARK 465 GLU C 149 REMARK 465 ASN C 150 REMARK 465 ASN C 151 REMARK 465 GLY C 152 REMARK 465 GLY C 153 REMARK 465 ASP C 154 REMARK 465 SER C 155 REMARK 465 ILE C 156 REMARK 465 ASN C 157 REMARK 465 SER C 158 REMARK 465 VAL C 159 REMARK 465 GLN C 160 REMARK 465 ARG C 161 REMARK 465 GLU C 162 REMARK 465 ILE C 163 REMARK 465 GLU C 164 REMARK 465 LEU C 203 REMARK 465 ARG C 204 REMARK 465 SER C 205 REMARK 465 ARG C 206 REMARK 465 GLY C 207 REMARK 465 LEU C 208 REMARK 465 LYS C 209 REMARK 465 ARG C 210 REMARK 465 LYS C 211 REMARK 465 MET C 212 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 218 CG CD OE1 OE2 REMARK 470 SER A 219 OG REMARK 470 ASP A 220 CG OD1 OD2 REMARK 470 ARG A 221 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 180 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 182 CG CD OE1 OE2 REMARK 470 ARG C 183 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP C 165 CB ARG C 183 2555 1.53 REMARK 500 CB ASP C 165 N ARG C 183 2555 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 38 0.82 -67.94 REMARK 500 ASP A 131 36.14 -75.99 REMARK 500 PRO A 138 74.33 -68.07 REMARK 500 TYR A 140 -80.05 -123.58 REMARK 500 ASN A 154 4.82 -66.25 REMARK 500 PRO A 166 0.39 -69.69 REMARK 500 ALA A 216 24.79 -77.02 REMARK 500 GLU A 218 36.09 -74.55 REMARK 500 SER A 219 -108.29 45.53 REMARK 500 ARG A 221 -123.10 68.32 REMARK 500 GLU A 239 1.62 -63.95 REMARK 500 ASP A 241 72.52 -153.07 REMARK 500 LEU A 302 77.38 -115.33 REMARK 500 ASN A 340 -84.10 -61.36 REMARK 500 LYS A 342 31.76 -81.40 REMARK 500 THR A 344 -63.09 44.43 REMARK 500 HIS A 453 1.60 -67.55 REMARK 500 PHE A 466 78.41 -154.13 REMARK 500 SER A 475 131.66 -36.85 REMARK 500 SER A 480 -76.32 -143.49 REMARK 500 SER A 482 -159.16 53.98 REMARK 500 SER A 483 -100.58 -110.31 REMARK 500 ASP A 487 60.34 -107.04 REMARK 500 GLN A 534 53.19 -111.59 REMARK 500 ALA A 559 86.40 50.69 REMARK 500 GLN A 560 -159.67 -82.71 REMARK 500 ASP A 600 -142.79 -89.82 REMARK 500 GLU A 657 -155.55 -72.56 REMARK 500 LEU B 525 -20.63 85.27 REMARK 500 ASP B 601 32.14 -88.71 REMARK 500 ASP B 605 71.36 -69.04 REMARK 500 ASP B 617 42.61 34.72 REMARK 500 ASN B 653 66.07 -170.56 REMARK 500 PHE B 685 -30.87 -154.08 REMARK 500 ARG C 180 82.03 -52.69 REMARK 500 LEU C 186 35.99 -99.56 REMARK 500 ALA C 198 147.39 75.43 REMARK 500 ARG C 199 14.50 -146.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9ZCS RELATED DB: PDB REMARK 900 VPS33/VPS16/NYV1/VAM3 COMPLEX REMARK 900 RELATED ID: 9ZCT RELATED DB: PDB REMARK 900 VPS33/VPS16/NYV1 COMPLEX DBREF 9ZBE A 0 667 UNP G0SCM5 G0SCM5_CHATD 139 806 DBREF 9ZBE B 502 730 PDB 9ZBE 9ZBE 502 730 DBREF 9ZBE C 148 212 UNP G0S5G3 G0S5G3_CHATD 148 212 SEQADV 9ZBE GLY A -1 UNP G0SCM5 EXPRESSION TAG SEQADV 9ZBE GLY C 146 UNP G0S5G3 EXPRESSION TAG SEQADV 9ZBE SER C 147 UNP G0S5G3 EXPRESSION TAG SEQRES 1 A 669 GLY SER MET ALA PRO ARG ALA GLY PHE ASP ALA GLU GLN SEQRES 2 A 669 VAL ARG ASP LYS ALA ARG LYS ASP LEU LEU HIS LEU LEU SEQRES 3 A 669 GLU GLY VAL ARG GLY LYS LYS ASN LEU VAL ILE GLU LYS SEQRES 4 A 669 ASP LEU ALA GLY PRO LEU GLY VAL ILE VAL LYS ALA SER SEQRES 5 A 669 THR LEU ARG ASP TYR GLY VAL ASP ASN PHE PHE PHE LEU SEQRES 6 A 669 GLU ASN LYS ASN THR GLY THR SER GLN ARG ASN ILE VAL SEQRES 7 A 669 PHE ILE ALA ARG GLY GLU SER VAL ARG ASN ALA HIS ALA SEQRES 8 A 669 ILE ALA ALA GLN ILE LYS ARG ILE GLN ARG GLU SER GLN SEQRES 9 A 669 THR SER HIS ASP PHE HIS ILE PHE TRP VAL PRO ARG ARG SEQRES 10 A 669 THR LEU PHE SER ASP LYS VAL LEU GLU GLU ALA GLY VAL SEQRES 11 A 669 LEU GLY ASP ALA ASN ILE SER GLU LEU PRO LEU TYR PHE SEQRES 12 A 669 PHE PRO LEU GLU ARG ASP VAL LEU SER LEU GLU LEU ASN SEQRES 13 A 669 ASP SER PHE ARG ASP LEU TYR LEU ALA LYS ASP PRO THR SEQRES 14 A 669 PRO VAL PHE LEU LEU SER ARG ALA LEU MET GLY ILE GLN SEQRES 15 A 669 LYS LYS HIS GLY LEU PHE PRO ARG ILE ILE GLY LYS GLY SEQRES 16 A 669 GLU ASN ALA LYS ARG VAL ALA ASP LEU LEU SER ARG MET SEQRES 17 A 669 ARG GLN GLU LEU LEU ALA GLY GLU GLU ALA GLY GLU SER SEQRES 18 A 669 ASP ARG ALA GLY LEU SER PRO SER THR THR ILE GLU SER SEQRES 19 A 669 VAL ILE ILE ILE ASP ARG GLU VAL ASP PHE VAL THR PRO SEQRES 20 A 669 LEU LEU THR GLN LEU THR TYR GLU GLY LEU ILE ASP GLU SEQRES 21 A 669 TYR PHE GLY ILE GLN ASN ASN GLN THR ASP VAL ASP ALA SEQRES 22 A 669 VAL ILE VAL GLY ALA PRO ALA GLN SER ALA ALA SER THR SEQRES 23 A 669 SER THR ALA VAL PRO THR ASN SER SER GLN SER ARG LYS SEQRES 24 A 669 ARG LYS ILE GLN LEU ASP GLY SER ASP SER LEU TYR SER SEQRES 25 A 669 GLN LEU ARG ASP ALA ASN PHE ALA ILE VAL GLY SER LEU SEQRES 26 A 669 LEU ASN THR VAL ALA ARG ARG LEU LYS SER ASP TYR GLU SEQRES 27 A 669 SER ARG HIS ASN THR LYS THR THR ALA GLU LEU LYS GLU SEQRES 28 A 669 PHE VAL LYS LYS LEU PRO GLY TYR GLN ALA GLU GLN GLN SEQRES 29 A 669 SER LEU LYS ILE HIS SER ASN ILE ALA GLU GLU ILE ILE SEQRES 30 A 669 ASN TYR THR ARG THR GLU ILE PHE ASN LYS LEU LEU GLU SEQRES 31 A 669 VAL GLN GLN ASN LEU ALA ALA GLY ALA ASP PRO SER SER SEQRES 32 A 669 GLN PHE ASP SER ILE GLU GLU LEU VAL ALA ARG ASP THR SEQRES 33 A 669 PRO LEU PRO GLN VAL LEU ARG LEU LEU CYS LEU TYR SER SEQRES 34 A 669 CYS ILE SER GLY GLY ILE LYS THR LYS GLU LEU ASP HIS SEQRES 35 A 669 PHE ARG ARG LEU VAL LEU GLN GLY TYR GLY HIS GLN HIS SEQRES 36 A 669 LEU LEU THR LEU HIS ASN LEU GLU ARG LEU GLN MET PHE SEQRES 37 A 669 LEU SER LYS SER SER PRO LEU ALA SER MET ILE THR MET SEQRES 38 A 669 SER GLY SER SER GLY GLY PRO ASP GLN LYS THR ASN TYR SEQRES 39 A 669 THR TYR LEU ARG LYS GLN LEU ARG LEU ILE VAL ASP GLU SEQRES 40 A 669 VAL ASN GLU GLN ASP PRO ASN ASP ILE ALA TYR VAL TYR SEQRES 41 A 669 SER GLY TYR ALA PRO LEU SER ILE ARG LEU VAL GLN CYS SEQRES 42 A 669 VAL LEU GLN LYS GLN TYR LEU LEU SER ILE THR LYS GLY SEQRES 43 A 669 SER GLY THR VAL ILE ALA ALA GLY PRO VAL ALA GLY GLY SEQRES 44 A 669 GLY ALA GLN GLY TRP LYS GLY PHE GLU GLU ILE VAL LYS SEQRES 45 A 669 HIS ALA ARG GLY PRO THR PHE ASP GLU ILE GLN LYS GLY SEQRES 46 A 669 GLU ASP LYS ALA VAL LYS ALA ARG ALA LEU LEU SER GLY SEQRES 47 A 669 SER SER GLY ASP LYS LYS THR VAL PHE VAL VAL PHE VAL SEQRES 48 A 669 GLY GLY ILE THR PHE THR GLU ILE ALA ALA LEU ARG PHE SEQRES 49 A 669 ILE ALA LYS GLN GLU GLU ALA ARG ARG ASN ILE VAL ILE SEQRES 50 A 669 CYS THR THR SER ILE ILE ASN GLY ASN ARG MET MET ASN SEQRES 51 A 669 ALA ALA ILE GLU THR ALA THR PHE GLU LYS THR THR VAL SEQRES 52 A 669 THR THR ALA ALA ALA GLN SEQRES 1 B 229 MET GLY SER SER PHE GLU VAL ILE ALA ARG THR ALA TYR SEQRES 2 B 229 GLU GLU GLY ARG THR ARG LEU ALA THR GLU LEU LEU ASN SEQRES 3 B 229 HIS GLU PRO ARG ALA GLY ARG GLN VAL PRO LEU LEU LEU SEQRES 4 B 229 SER MET GLU GLU ASP GLU LEU ALA LEU ASP LYS ALA ILE SEQRES 5 B 229 GLU SER GLY ASP THR ASP LEU ILE TYR PHE VAL ILE HIS SEQRES 6 B 229 GLN LEU ARG ARG LYS LEU PRO LEU ALA SER PHE PHE ARG SEQRES 7 B 229 VAL VAL SER SER ARG PRO THR ALA SER ALA MET VAL GLU SEQRES 8 B 229 ALA LEU ALA ARG ASN SER ASP GLY ASP GLY ASN GLU ASP SEQRES 9 B 229 THR ALA LEU LEU LYS ASP LEU TYR TYR GLN ASP ASP ARG SEQRES 10 B 229 ARG LEU ASP GLY ALA SER VAL PHE ILE ARG GLU ALA LEU SEQRES 11 B 229 GLN GLN PRO GLU THR ARG THR ALA SER ASP LYS LEU ASP SEQRES 12 B 229 LEU ALA ALA ASN LEU LEU GLN GLY ASN GLN LYS GLU HIS SEQRES 13 B 229 VAL PHE GLU LEU GLY ALA LEU LYS GLU ALA LYS MET LEU SEQRES 14 B 229 LEU ARG MET GLN GLU THR PHE GLU ARG ASP LEU THR ASP SEQRES 15 B 229 SER PHE VAL GLY LEU SER VAL ASN GLN THR MET PHE LYS SEQRES 16 B 229 LEU ILE LYS LEU GLY TYR HIS GLY ARG ALA LYS LYS ILE SEQRES 17 B 229 GLN SER GLU PHE LYS VAL PRO GLU ARG VAL ALA TRP TRP SEQRES 18 B 229 ILE ARG LEU GLN ALA LEU VAL ALA SEQRES 1 C 67 GLY SER VAL GLU ASN ASN GLY GLY ASP SER ILE ASN SER SEQRES 2 C 67 VAL GLN ARG GLU ILE GLU ASP VAL ARG GLY ILE MET SER SEQRES 3 C 67 ARG ASN ILE GLU GLY LEU LEU GLU ARG GLY GLU ARG ILE SEQRES 4 C 67 ASP LEU LEU VAL ASP LYS THR ASP ARG LEU GLY GLY SER SEQRES 5 C 67 ALA ARG GLU PHE ARG LEU ARG SER ARG GLY LEU LYS ARG SEQRES 6 C 67 LYS MET FORMUL 4 HOH *9(H2 O) HELIX 1 AA1 ASP A 8 VAL A 27 1 20 HELIX 2 AA2 GLU A 36 VAL A 45 1 10 HELIX 3 AA3 LYS A 48 TYR A 55 1 8 HELIX 4 AA4 GLU A 64 LYS A 66 5 3 HELIX 5 AA5 SER A 83 ARG A 99 1 17 HELIX 6 AA6 THR A 116 GLU A 125 1 10 HELIX 7 AA7 ASP A 155 LEU A 162 1 8 HELIX 8 AA8 PRO A 166 GLY A 184 1 19 HELIX 9 AA9 GLY A 193 ALA A 216 1 24 HELIX 10 AB1 GLU A 239 ASP A 241 5 3 HELIX 11 AB2 PHE A 242 LEU A 247 1 6 HELIX 12 AB3 THR A 251 PHE A 260 1 10 HELIX 13 AB4 ASP A 306 ARG A 313 1 8 HELIX 14 AB5 ASN A 316 ALA A 318 5 3 HELIX 15 AB6 ILE A 319 TYR A 335 1 17 HELIX 16 AB7 THR A 344 LYS A 353 1 10 HELIX 17 AB8 LEU A 354 ARG A 379 1 26 HELIX 18 AB9 THR A 380 ALA A 395 1 16 HELIX 19 AC1 ASP A 398 SER A 401 5 4 HELIX 20 AC2 GLN A 402 ARG A 412 1 11 HELIX 21 AC3 PRO A 415 GLY A 431 1 17 HELIX 22 AC4 LYS A 434 GLY A 450 1 17 HELIX 23 AC5 HIS A 453 LEU A 463 1 11 HELIX 24 AC6 ASN A 491 LEU A 499 1 9 HELIX 25 AC7 ASP A 513 VAL A 517 5 5 HELIX 26 AC8 PRO A 523 GLN A 534 1 12 HELIX 27 AC9 GLN A 534 THR A 542 1 9 HELIX 28 AD1 PHE A 565 LYS A 570 1 6 HELIX 29 AD2 THR A 613 GLU A 627 1 15 HELIX 30 AD3 ASN A 642 ALA A 649 1 8 HELIX 31 AD4 ARG B 531 MET B 542 1 12 HELIX 32 AD5 GLU B 544 GLY B 556 1 13 HELIX 33 AD6 ASP B 557 LEU B 572 1 16 HELIX 34 AD7 PRO B 573 SER B 583 1 11 HELIX 35 AD8 ARG B 584 ASN B 597 1 14 HELIX 36 AD9 ASP B 605 ASP B 616 1 12 HELIX 37 AE1 ARG B 618 LEU B 631 1 14 HELIX 38 AE2 GLU B 635 GLN B 651 1 17 HELIX 39 AE3 GLY B 652 GLN B 654 5 3 HELIX 40 AE4 HIS B 657 THR B 682 1 26 HELIX 41 AE5 SER B 689 GLY B 701 1 13 HELIX 42 AE6 TYR B 702 PHE B 713 1 12 HELIX 43 AE7 PRO B 716 ALA B 730 1 15 HELIX 44 AE8 VAL C 166 GLU C 179 1 14 HELIX 45 AE9 VAL C 188 GLY C 196 1 9 SHEET 1 AA1 5 VAL A 57 PHE A 62 0 SHEET 2 AA1 5 LYS A 31 ILE A 35 1 N LEU A 33 O PHE A 61 SHEET 3 AA1 5 ASN A 74 ARG A 80 1 O VAL A 76 N VAL A 34 SHEET 4 AA1 5 ASP A 106 VAL A 112 1 O HIS A 108 N PHE A 77 SHEET 5 AA1 5 ALA A 132 GLU A 136 1 O SER A 135 N ILE A 109 SHEET 1 AA2 7 PHE A 142 GLU A 145 0 SHEET 2 AA2 7 VAL A 148 SER A 150 -1 O SER A 150 N PHE A 142 SHEET 3 AA2 7 ARG A 631 THR A 637 1 O ILE A 635 N LEU A 149 SHEET 4 AA2 7 LYS A 602 VAL A 609 1 N VAL A 606 O CYS A 636 SHEET 5 AA2 7 ILE A 230 ASP A 237 1 N ILE A 234 O VAL A 607 SHEET 6 AA2 7 ARG A 188 LYS A 192 1 N ILE A 190 O VAL A 233 SHEET 7 AA2 7 THR A 576 ILE A 580 -1 O PHE A 577 N GLY A 191 SHEET 1 AA3 2 GLN A 266 VAL A 269 0 SHEET 2 AA3 2 ARG A 298 GLN A 301 -1 O ILE A 300 N THR A 267 CISPEP 1 VAL A 112 PRO A 113 0 -0.46 CRYST1 101.030 258.936 75.274 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009898 0.000000 0.000000 0.00000 SCALE2 0.000000 0.003862 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013285 0.00000 MASTER 528 0 0 45 14 0 0 6 6758 3 0 76 END