HEADER OXIDOREDUCTASE 01-JAN-26 9ZW6 TITLE STRUCTURE OF THE HMG-COA REDUCTASE FROM BORRELIA BURGDORFERI BOUND TO TITLE 2 HMG-COA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HMG-COA REDUCTASE; COMPND 5 EC: 1.1.1.88; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BORRELIELLA BURGDORFERI B31; SOURCE 3 ORGANISM_TAXID: 224326; SOURCE 4 GENE: BB_0685; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS CLASS II HMGR, BACTERIAL, ISOPRENOID BIOSYNTHESIS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR I.PADDY,L.M.K.DASSMA REVDAT 1 02-SEP-26 9ZW6 0 JRNL AUTH I.A.PADDY,J.MCCAUSLAND,M.FRAZIER,P.CHATTERJEE,M.SETEGNE, JRNL AUTH 2 O.EIDAM,C.JACOBS-WAGNER,L.M.K.DASSAMA JRNL TITL A COFACTOR-PROMISCUOUS HMGR FROM THE LYME DISEASE PATHOGEN JRNL TITL 2 ILLUMINATES DIVERSITY IN BACTERIAL ISOPRENOID BIOSYNTHESIS. JRNL REF PROTEIN SCI. V. 35 70766 2026 JRNL REFN ESSN 1469-896X JRNL PMID 42615804 JRNL DOI 10.1002/PRO.70766 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.1_5286 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 27600 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.250 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.8600 - 6.1100 0.96 1904 148 0.2085 0.2444 REMARK 3 2 6.1100 - 4.8600 0.99 1888 148 0.2196 0.2589 REMARK 3 3 4.8600 - 4.2500 0.99 1862 146 0.1832 0.2077 REMARK 3 4 4.2500 - 3.8600 1.00 1842 144 0.1971 0.2359 REMARK 3 5 3.8600 - 3.5900 0.97 1804 140 0.2026 0.2555 REMARK 3 6 3.5900 - 3.3700 0.98 1819 143 0.2222 0.3059 REMARK 3 7 3.3700 - 3.2100 0.98 1771 137 0.2361 0.2625 REMARK 3 8 3.2100 - 3.0700 0.99 1821 144 0.2450 0.3045 REMARK 3 9 3.0700 - 2.9500 0.99 1838 143 0.2490 0.3485 REMARK 3 10 2.9500 - 2.8500 1.00 1802 141 0.2502 0.3407 REMARK 3 11 2.8500 - 2.7600 1.00 1830 143 0.2380 0.2966 REMARK 3 12 2.7600 - 2.6800 1.00 1834 143 0.2287 0.2810 REMARK 3 13 2.6800 - 2.6100 1.00 1789 140 0.2444 0.2873 REMARK 3 14 2.6100 - 2.5500 0.98 1796 140 0.2493 0.3192 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.820 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.85 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 6657 REMARK 3 ANGLE : 0.806 8969 REMARK 3 CHIRALITY : 0.048 1006 REMARK 3 PLANARITY : 0.010 1121 REMARK 3 DIHEDRAL : 9.643 943 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN B AND RESSEQ 10:418) REMARK 3 ORIGIN FOR THE GROUP (A): 17.3495 -1.0759 18.0412 REMARK 3 T TENSOR REMARK 3 T11: 0.2261 T22: 0.3876 REMARK 3 T33: 0.2465 T12: 0.0425 REMARK 3 T13: 0.0153 T23: -0.0201 REMARK 3 L TENSOR REMARK 3 L11: 0.7480 L22: 1.0033 REMARK 3 L33: 1.8930 L12: 0.2377 REMARK 3 L13: 0.1246 L23: 0.5850 REMARK 3 S TENSOR REMARK 3 S11: -0.0514 S12: 0.0821 S13: 0.0007 REMARK 3 S21: 0.0328 S22: 0.1095 S23: -0.1695 REMARK 3 S31: 0.0953 S32: 0.2403 S33: -0.0717 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 10:405) REMARK 3 ORIGIN FOR THE GROUP (A): -0.2399 0.3823 24.6469 REMARK 3 T TENSOR REMARK 3 T11: 0.1976 T22: 0.3809 REMARK 3 T33: 0.2465 T12: -0.0001 REMARK 3 T13: 0.0378 T23: -0.0331 REMARK 3 L TENSOR REMARK 3 L11: 0.7604 L22: 1.1928 REMARK 3 L33: 1.9224 L12: 0.0762 REMARK 3 L13: 0.1272 L23: -0.1019 REMARK 3 S TENSOR REMARK 3 S11: -0.0499 S12: -0.0109 S13: -0.0014 REMARK 3 S21: 0.0693 S22: 0.0344 S23: 0.1123 REMARK 3 S31: 0.1028 S32: -0.2479 S33: 0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 10 through 404 or REMARK 3 (resid 405 and (name N or name CA or name REMARK 3 C or name O or name CB or name CG or name REMARK 3 SD or name CE )) or resid 501)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 10 through 405 or REMARK 3 resid 501)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9ZW6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JAN-26. REMARK 100 THE DEPOSITION ID IS D_1000303861. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5-7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979458 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50333 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.546 REMARK 200 RESOLUTION RANGE LOW (A) : 24.860 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.16600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.5100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 1.03700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.190 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: WITH 0.1 M BIS-TRIS HCL AND VARIED PH REMARK 280 FROM 5.5 TO 7, AND 19 TO 29% (W/V) PEG 3350, 1 MM HMG-COA, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.26950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.81050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.39750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.81050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.26950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.39750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 LEU A 3 REMARK 465 GLU A 4 REMARK 465 SER A 5 REMARK 465 LEU A 6 REMARK 465 SER A 7 REMARK 465 SER A 8 REMARK 465 PHE A 9 REMARK 465 GLU A 406 REMARK 465 ARG A 407 REMARK 465 MET A 408 REMARK 465 ASN A 409 REMARK 465 ILE A 410 REMARK 465 TYR A 411 REMARK 465 SER A 412 REMARK 465 PHE A 413 REMARK 465 ASP A 414 REMARK 465 PHE A 415 REMARK 465 ALA A 416 REMARK 465 PHE A 417 REMARK 465 LYS A 418 REMARK 465 ILE A 419 REMARK 465 LEU A 420 REMARK 465 LYS A 421 REMARK 465 LYS A 422 REMARK 465 ILE A 423 REMARK 465 ARG A 424 REMARK 465 LEU A 425 REMARK 465 GLU A 426 REMARK 465 ASN A 427 REMARK 465 GLU A 428 REMARK 465 ASN A 429 REMARK 465 LYS A 430 REMARK 465 VAL A 431 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 LEU B 3 REMARK 465 GLU B 4 REMARK 465 SER B 5 REMARK 465 LEU B 6 REMARK 465 SER B 7 REMARK 465 SER B 8 REMARK 465 PHE B 9 REMARK 465 ILE B 419 REMARK 465 LEU B 420 REMARK 465 LYS B 421 REMARK 465 LYS B 422 REMARK 465 ILE B 423 REMARK 465 ARG B 424 REMARK 465 LEU B 425 REMARK 465 GLU B 426 REMARK 465 ASN B 427 REMARK 465 GLU B 428 REMARK 465 ASN B 429 REMARK 465 LYS B 430 REMARK 465 VAL B 431 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 390 OD1 ASP B 414 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O GLU B 33 NZ LYS B 127 3645 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS B 127 CA - CB - CG ANGL. DEV. = 13.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 41 50.90 35.89 REMARK 500 ASN A 42 -158.55 -140.06 REMARK 500 SER A 87 -7.00 78.39 REMARK 500 PHE A 129 48.32 -93.29 REMARK 500 CYS A 177 -135.65 52.71 REMARK 500 LEU A 229 -60.51 -101.50 REMARK 500 THR A 305 -165.58 -108.59 REMARK 500 ASN A 369 -115.33 54.13 REMARK 500 ARG A 377 95.75 -69.27 REMARK 500 ASN A 381 47.41 -91.59 REMARK 500 LEU A 387 159.99 179.18 REMARK 500 LYS A 400 94.57 -69.35 REMARK 500 LEU A 402 97.38 -68.81 REMARK 500 TYR B 41 49.42 37.23 REMARK 500 ASN B 42 -158.19 -140.23 REMARK 500 SER B 87 -7.89 78.36 REMARK 500 CYS B 177 -133.91 53.89 REMARK 500 LEU B 229 -61.05 -100.92 REMARK 500 THR B 305 -166.31 -104.91 REMARK 500 GLN B 372 -78.68 -122.00 REMARK 500 LEU B 378 108.13 -58.86 REMARK 500 THR B 389 70.21 61.50 REMARK 500 GLU B 404 -89.36 -124.95 REMARK 500 MET B 408 46.87 -80.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 150 0.12 SIDE CHAIN REMARK 500 ARG A 156 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 9ZW6 A 1 431 UNP O51628 HMDH_BORBU 1 431 DBREF 9ZW6 B 1 431 UNP O51628 HMDH_BORBU 1 431 SEQADV 9ZW6 HIS A -5 UNP O51628 EXPRESSION TAG SEQADV 9ZW6 HIS A -4 UNP O51628 EXPRESSION TAG SEQADV 9ZW6 HIS A -3 UNP O51628 EXPRESSION TAG SEQADV 9ZW6 HIS A -2 UNP O51628 EXPRESSION TAG SEQADV 9ZW6 HIS A -1 UNP O51628 EXPRESSION TAG SEQADV 9ZW6 HIS A 0 UNP O51628 EXPRESSION TAG SEQADV 9ZW6 HIS B -5 UNP O51628 EXPRESSION TAG SEQADV 9ZW6 HIS B -4 UNP O51628 EXPRESSION TAG SEQADV 9ZW6 HIS B -3 UNP O51628 EXPRESSION TAG SEQADV 9ZW6 HIS B -2 UNP O51628 EXPRESSION TAG SEQADV 9ZW6 HIS B -1 UNP O51628 EXPRESSION TAG SEQADV 9ZW6 HIS B 0 UNP O51628 EXPRESSION TAG SEQRES 1 A 437 HIS HIS HIS HIS HIS HIS MET ASN LEU GLU SER LEU SER SEQRES 2 A 437 SER PHE MET GLU LEU SER LYS ASN PHE ARG HIS LYS SER SEQRES 3 A 437 VAL LEU GLU LYS ARG GLN GLU ILE LYS SER PHE LEU GLU SEQRES 4 A 437 LEU SER TYR LYS ASP PHE PHE TYR ASN ASN ALA ASN GLU SEQRES 5 A 437 ASP PHE LEU PHE ASN MET ILE GLU ASN TYR ILE GLY TYR SEQRES 6 A 437 LEU SER PHE PRO ILE GLY ILE VAL LYS ASN LEU LYS ILE SEQRES 7 A 437 ASN GLY LYS TYR TYR SER LEU PRO ILE ALA THR GLU GLU SEQRES 8 A 437 SER SER VAL VAL ALA ALA LEU ASN PHE ALA ALA LYS ILE SEQRES 9 A 437 LEU GLU ASN ALA ASP LEU ARG TYR SER LEU GLY GLU VAL SEQRES 10 A 437 LEU GLY ILE SER GLN ILE TYR ILE LYS SER GLU LYS ASP SEQRES 11 A 437 LEU SER LYS ILE PHE VAL ASP LEU GLY ASP LYS ILE LYS SEQRES 12 A 437 THR TRP ILE GLU PRO LEU LEU THR ASN MET ASN GLN ARG SEQRES 13 A 437 GLY GLY GLY PHE ARG ARG LEU SER THR ARG HIS ILE LYS SEQRES 14 A 437 GLU LEU GLY ILE GLN LYS LEU ASN ILE TYR VAL ASP THR SEQRES 15 A 437 CYS ASP ALA MET GLY ALA ASN LEU LEU ASN SER ILE ALA SEQRES 16 A 437 GLU ARG VAL ALA GLU PHE ILE PHE LEU GLU PHE GLY TYR SEQRES 17 A 437 GLU CYS VAL LEU LYS VAL LEU SER ASN ASP ILE SER GLU SEQRES 18 A 437 PHE THR ALA LYS ALA ARG PHE VAL LEU ASP PHE LYS HIS SEQRES 19 A 437 LEU LEU PRO GLY LYS GLU ASP SER TRP ASN LEU ALA LYS SEQRES 20 A 437 LYS ILE GLU LEU ILE SER SER ILE GLY PHE TYR GLU GLU SEQRES 21 A 437 GLU ARG ALA VAL THR ASN ASN LYS GLY ILE MET ASN GLY SEQRES 22 A 437 ILE THR GLY VAL CYS LEU ALA THR PHE ASN ASP THR ARG SEQRES 23 A 437 ALA LEU GLU ALA SER VAL HIS LYS PHE ALA SER LYS SER SEQRES 24 A 437 GLY LYS TYR PHE PRO LEU SER LYS PHE TYR THR THR ASP SEQRES 25 A 437 ASN ALA LEU VAL GLY GLU ILE GLU ILE PRO LEU GLN VAL SEQRES 26 A 437 GLY THR LYS GLY GLY VAL ILE SER PHE ASN GLU ALA SER SEQRES 27 A 437 ILE LEU SER PHE LYS ILE MET ASN VAL ASN SER LYS SER SEQRES 28 A 437 GLU PHE ILE GLY ILE LEU SER CYS VAL GLY LEU ALA SER SEQRES 29 A 437 ASN PHE ALA ALA LEU ARG ALA LEU ALA PHE ASN GLY ILE SEQRES 30 A 437 GLN LYS GLY HIS MET ARG LEU HIS VAL ASN LYS ILE LEU SEQRES 31 A 437 HIS LEU LEU LYS THR LYS TYR ASN ILE SER ASP PHE GLU SEQRES 32 A 437 LYS ASP LYS LEU LEU LEU GLU MET GLU ARG MET ASN ILE SEQRES 33 A 437 TYR SER PHE ASP PHE ALA PHE LYS ILE LEU LYS LYS ILE SEQRES 34 A 437 ARG LEU GLU ASN GLU ASN LYS VAL SEQRES 1 B 437 HIS HIS HIS HIS HIS HIS MET ASN LEU GLU SER LEU SER SEQRES 2 B 437 SER PHE MET GLU LEU SER LYS ASN PHE ARG HIS LYS SER SEQRES 3 B 437 VAL LEU GLU LYS ARG GLN GLU ILE LYS SER PHE LEU GLU SEQRES 4 B 437 LEU SER TYR LYS ASP PHE PHE TYR ASN ASN ALA ASN GLU SEQRES 5 B 437 ASP PHE LEU PHE ASN MET ILE GLU ASN TYR ILE GLY TYR SEQRES 6 B 437 LEU SER PHE PRO ILE GLY ILE VAL LYS ASN LEU LYS ILE SEQRES 7 B 437 ASN GLY LYS TYR TYR SER LEU PRO ILE ALA THR GLU GLU SEQRES 8 B 437 SER SER VAL VAL ALA ALA LEU ASN PHE ALA ALA LYS ILE SEQRES 9 B 437 LEU GLU ASN ALA ASP LEU ARG TYR SER LEU GLY GLU VAL SEQRES 10 B 437 LEU GLY ILE SER GLN ILE TYR ILE LYS SER GLU LYS ASP SEQRES 11 B 437 LEU SER LYS ILE PHE VAL ASP LEU GLY ASP LYS ILE LYS SEQRES 12 B 437 THR TRP ILE GLU PRO LEU LEU THR ASN MET ASN GLN ARG SEQRES 13 B 437 GLY GLY GLY PHE ARG ARG LEU SER THR ARG HIS ILE LYS SEQRES 14 B 437 GLU LEU GLY ILE GLN LYS LEU ASN ILE TYR VAL ASP THR SEQRES 15 B 437 CYS ASP ALA MET GLY ALA ASN LEU LEU ASN SER ILE ALA SEQRES 16 B 437 GLU ARG VAL ALA GLU PHE ILE PHE LEU GLU PHE GLY TYR SEQRES 17 B 437 GLU CYS VAL LEU LYS VAL LEU SER ASN ASP ILE SER GLU SEQRES 18 B 437 PHE THR ALA LYS ALA ARG PHE VAL LEU ASP PHE LYS HIS SEQRES 19 B 437 LEU LEU PRO GLY LYS GLU ASP SER TRP ASN LEU ALA LYS SEQRES 20 B 437 LYS ILE GLU LEU ILE SER SER ILE GLY PHE TYR GLU GLU SEQRES 21 B 437 GLU ARG ALA VAL THR ASN ASN LYS GLY ILE MET ASN GLY SEQRES 22 B 437 ILE THR GLY VAL CYS LEU ALA THR PHE ASN ASP THR ARG SEQRES 23 B 437 ALA LEU GLU ALA SER VAL HIS LYS PHE ALA SER LYS SER SEQRES 24 B 437 GLY LYS TYR PHE PRO LEU SER LYS PHE TYR THR THR ASP SEQRES 25 B 437 ASN ALA LEU VAL GLY GLU ILE GLU ILE PRO LEU GLN VAL SEQRES 26 B 437 GLY THR LYS GLY GLY VAL ILE SER PHE ASN GLU ALA SER SEQRES 27 B 437 ILE LEU SER PHE LYS ILE MET ASN VAL ASN SER LYS SER SEQRES 28 B 437 GLU PHE ILE GLY ILE LEU SER CYS VAL GLY LEU ALA SER SEQRES 29 B 437 ASN PHE ALA ALA LEU ARG ALA LEU ALA PHE ASN GLY ILE SEQRES 30 B 437 GLN LYS GLY HIS MET ARG LEU HIS VAL ASN LYS ILE LEU SEQRES 31 B 437 HIS LEU LEU LYS THR LYS TYR ASN ILE SER ASP PHE GLU SEQRES 32 B 437 LYS ASP LYS LEU LEU LEU GLU MET GLU ARG MET ASN ILE SEQRES 33 B 437 TYR SER PHE ASP PHE ALA PHE LYS ILE LEU LYS LYS ILE SEQRES 34 B 437 ARG LEU GLU ASN GLU ASN LYS VAL HET HMG A 501 58 HET HMG B 501 58 HETNAM HMG 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A HETSYN HMG (S)-HMG-COA FORMUL 3 HMG 2(C27 H39 N7 O20 P3 S 5-) FORMUL 5 HOH *54(H2 O) HELIX 1 AA1 ASN A 15 LYS A 19 5 5 HELIX 2 AA2 SER A 20 GLU A 33 1 14 HELIX 3 AA3 ASN A 45 ILE A 53 1 9 HELIX 4 AA4 SER A 87 GLU A 100 1 14 HELIX 5 AA5 LYS A 127 VAL A 130 5 4 HELIX 6 AA6 ASP A 131 ASN A 146 1 16 HELIX 7 AA7 GLY A 181 GLY A 201 1 21 HELIX 8 AA8 LYS A 227 LEU A 229 5 3 HELIX 9 AA9 GLY A 232 GLY A 250 1 19 HELIX 10 AB1 GLU A 253 THR A 275 1 23 HELIX 11 AB2 ASP A 278 ALA A 290 1 13 HELIX 12 AB3 ASN A 329 ASN A 340 1 12 HELIX 13 AB4 SER A 343 PHE A 368 1 26 HELIX 14 AB5 ASN B 15 LYS B 19 5 5 HELIX 15 AB6 SER B 20 GLU B 33 1 14 HELIX 16 AB7 ASN B 45 ILE B 53 1 9 HELIX 17 AB8 SER B 87 GLU B 100 1 14 HELIX 18 AB9 LEU B 125 VAL B 130 1 6 HELIX 19 AC1 LEU B 132 MET B 147 1 16 HELIX 20 AC2 GLY B 181 GLY B 201 1 21 HELIX 21 AC3 LYS B 227 LEU B 229 5 3 HELIX 22 AC4 GLY B 232 GLY B 250 1 19 HELIX 23 AC5 GLU B 253 THR B 275 1 23 HELIX 24 AC6 ASP B 278 ALA B 290 1 13 HELIX 25 AC7 ASN B 329 ASN B 340 1 12 HELIX 26 AC8 SER B 343 PHE B 368 1 26 HELIX 27 AC9 GLN B 372 LEU B 378 1 7 HELIX 28 AD1 VAL B 380 THR B 389 1 10 HELIX 29 AD2 GLU B 397 GLU B 404 1 8 HELIX 30 AD3 ASN B 409 LYS B 418 1 10 SHEET 1 AA1 4 LYS A 75 ALA A 82 0 SHEET 2 AA1 4 TYR A 56 ILE A 72 -1 N ILE A 72 O LYS A 75 SHEET 3 AA1 4 TYR B 56 ILE B 72 -1 O LEU B 60 N PHE A 62 SHEET 4 AA1 4 LYS B 75 ALA B 82 -1 O LYS B 75 N ILE B 72 SHEET 1 AA2 4 ARG A 105 LEU A 108 0 SHEET 2 AA2 4 ALA A 218 ASP A 225 -1 O LYS A 219 N SER A 107 SHEET 3 AA2 4 ALA A 308 ILE A 315 -1 O ILE A 315 N ALA A 218 SHEET 4 AA2 4 SER A 300 THR A 304 -1 N TYR A 303 O VAL A 310 SHEET 1 AA3 4 GLY A 153 ILE A 162 0 SHEET 2 AA3 4 ILE A 167 ASP A 175 -1 O LYS A 169 N ARG A 160 SHEET 3 AA3 4 GLY A 113 LYS A 120 -1 N ILE A 119 O GLN A 168 SHEET 4 AA3 4 CYS A 204 LEU A 209 -1 O LEU A 206 N TYR A 118 SHEET 1 AA4 4 ARG B 105 SER B 107 0 SHEET 2 AA4 4 ALA B 218 ASP B 225 -1 O LYS B 219 N SER B 107 SHEET 3 AA4 4 ALA B 308 ILE B 315 -1 O ILE B 315 N ALA B 218 SHEET 4 AA4 4 SER B 300 THR B 304 -1 N TYR B 303 O VAL B 310 SHEET 1 AA5 4 GLY B 153 ILE B 162 0 SHEET 2 AA5 4 ILE B 167 ASP B 175 -1 O LYS B 169 N ARG B 160 SHEET 3 AA5 4 GLY B 113 LYS B 120 -1 N ILE B 119 O GLN B 168 SHEET 4 AA5 4 CYS B 204 LEU B 209 -1 O LEU B 206 N TYR B 118 CRYST1 54.539 108.795 139.621 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018336 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009192 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007162 0.00000 MTRIX1 1 -0.973325 0.228589 0.019647 17.65162 1 MTRIX2 1 0.228504 0.958139 0.172500 -5.33204 1 MTRIX3 1 0.020607 0.172388 -0.984814 43.03662 1 CONECT 6420 6421 6422 6423 6424 CONECT 6421 6420 CONECT 6422 6420 CONECT 6423 6420 6425 CONECT 6424 6420 6452 CONECT 6425 6423 6426 6427 6428 CONECT 6426 6425 CONECT 6427 6425 CONECT 6428 6425 6429 CONECT 6429 6428 6430 CONECT 6430 6429 6431 6432 CONECT 6431 6430 6436 CONECT 6432 6430 6433 6434 CONECT 6433 6432 6437 CONECT 6434 6432 6435 6436 CONECT 6435 6434 CONECT 6436 6431 6434 6441 CONECT 6437 6433 6438 6439 6440 CONECT 6438 6437 CONECT 6439 6437 CONECT 6440 6437 CONECT 6441 6436 6442 6449 CONECT 6442 6441 6443 6447 CONECT 6443 6442 6444 CONECT 6444 6443 6445 CONECT 6445 6444 6446 CONECT 6446 6445 6447 6450 CONECT 6447 6442 6446 6448 CONECT 6448 6447 6449 CONECT 6449 6441 6448 CONECT 6450 6446 CONECT 6451 6452 6453 6454 6455 CONECT 6452 6424 6451 CONECT 6453 6451 CONECT 6454 6451 CONECT 6455 6451 6456 6457 CONECT 6456 6455 CONECT 6457 6455 6458 6459 CONECT 6458 6457 CONECT 6459 6457 6460 CONECT 6460 6459 6461 CONECT 6461 6460 6462 CONECT 6462 6461 6463 6464 CONECT 6463 6462 CONECT 6464 6462 6465 CONECT 6465 6464 6466 CONECT 6466 6465 6467 CONECT 6467 6466 6468 CONECT 6468 6467 6469 6470 CONECT 6469 6468 CONECT 6470 6468 6471 CONECT 6471 6470 6472 6473 6477 CONECT 6472 6471 CONECT 6473 6471 6474 CONECT 6474 6473 6475 6476 CONECT 6475 6474 CONECT 6476 6474 CONECT 6477 6471 CONECT 6478 6479 6480 6481 6482 CONECT 6479 6478 CONECT 6480 6478 CONECT 6481 6478 6483 CONECT 6482 6478 6510 CONECT 6483 6481 6484 6485 6486 CONECT 6484 6483 CONECT 6485 6483 CONECT 6486 6483 6487 CONECT 6487 6486 6488 CONECT 6488 6487 6489 6490 CONECT 6489 6488 6494 CONECT 6490 6488 6491 6492 CONECT 6491 6490 6495 CONECT 6492 6490 6493 6494 CONECT 6493 6492 CONECT 6494 6489 6492 6499 CONECT 6495 6491 6496 6497 6498 CONECT 6496 6495 CONECT 6497 6495 CONECT 6498 6495 CONECT 6499 6494 6500 6507 CONECT 6500 6499 6501 6505 CONECT 6501 6500 6502 CONECT 6502 6501 6503 CONECT 6503 6502 6504 CONECT 6504 6503 6505 6508 CONECT 6505 6500 6504 6506 CONECT 6506 6505 6507 CONECT 6507 6499 6506 CONECT 6508 6504 CONECT 6509 6510 6511 6512 6513 CONECT 6510 6482 6509 CONECT 6511 6509 CONECT 6512 6509 CONECT 6513 6509 6514 6515 CONECT 6514 6513 CONECT 6515 6513 6516 6517 CONECT 6516 6515 CONECT 6517 6515 6518 CONECT 6518 6517 6519 CONECT 6519 6518 6520 CONECT 6520 6519 6521 6522 CONECT 6521 6520 CONECT 6522 6520 6523 CONECT 6523 6522 6524 CONECT 6524 6523 6525 CONECT 6525 6524 6526 CONECT 6526 6525 6527 6528 CONECT 6527 6526 CONECT 6528 6526 6529 CONECT 6529 6528 6530 6531 6535 CONECT 6530 6529 CONECT 6531 6529 6532 CONECT 6532 6531 6533 6534 CONECT 6533 6532 CONECT 6534 6532 CONECT 6535 6529 MASTER 433 0 2 30 20 0 0 9 6587 2 116 68 END