HEADER TRANSFERASE 03-JAN-26 9ZWV TITLE CRYSTAL STRUCTURE OF THE N4BP2 POLYNUCLEOTIDE KINASE DOMAIN COMPLEXED TITLE 2 WITH ATP, MG, AND THE TRINUCLEOTIDE SUBSTRATE CAA. COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEDD4-BINDING PROTEIN 2; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: N4BP2,BCL-3-BINDING PROTEIN; COMPND 5 EC: 3.-.-.-; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: NEDD4-BINDING PROTEIN 2; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: 5'-OH RNA (5'-R(CPAPA)-3'); COMPND 10 CHAIN: D, E, F; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: N4BP2, B3BP, KIAA1413; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS TRANSFERASE; POLYNUCLEOTIDE KINASE; CATALYSIS; ENZYME REACTION; KEYWDS 2 CATALYTIC MECHANISM; PHOSPHORYL TRANSFER, RNA, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.WANG,R.E.STANLEY REVDAT 1 23-SEP-26 9ZWV 0 JRNL AUTH H.WANG,R.E.STANLEY JRNL TITL STRUCTURE, SPECIFICITY, AND CATALYTIC MECHANISM OF THE JRNL TITL 2 POLYNUCLEOTIDE KINASE DOMAINS FROM THE HUMAN N4BP2 KINASE JRNL TITL 3 FAMILY JRNL REF NAT COMMUN 2026 JRNL REFN ESSN 2041-1723 REMARK 2 REMARK 2 RESOLUTION. 2.26 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 2.0_5936 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.26 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 29570 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.760 REMARK 3 FREE R VALUE TEST SET COUNT : 1409 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.0700 - 4.8600 1.00 2971 142 0.1661 0.1879 REMARK 3 2 4.8600 - 3.8600 1.00 2870 127 0.1525 0.1791 REMARK 3 3 3.8600 - 3.3800 1.00 2825 141 0.1827 0.2340 REMARK 3 4 3.3800 - 3.0700 1.00 2798 165 0.2133 0.2687 REMARK 3 5 3.0700 - 2.8500 1.00 2786 144 0.2357 0.2899 REMARK 3 6 2.8500 - 2.6800 1.00 2791 143 0.2568 0.3083 REMARK 3 7 2.6800 - 2.5500 1.00 2815 139 0.2678 0.3164 REMARK 3 8 2.5500 - 2.4300 1.00 2761 139 0.2820 0.3050 REMARK 3 9 2.4300 - 2.3400 1.00 2797 120 0.2960 0.3633 REMARK 3 10 2.3400 - 2.2600 0.99 2747 149 0.3177 0.3630 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.317 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.764 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.75 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 4322 REMARK 3 ANGLE : 0.923 5915 REMARK 3 CHIRALITY : 0.052 622 REMARK 3 PLANARITY : 0.006 688 REMARK 3 DIHEDRAL : 13.658 1615 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -25.0434 -24.0042 -25.5731 REMARK 3 T TENSOR REMARK 3 T11: 0.3088 T22: 0.3641 REMARK 3 T33: 0.3477 T12: 0.0040 REMARK 3 T13: 0.0082 T23: -0.0203 REMARK 3 L TENSOR REMARK 3 L11: 1.9464 L22: 1.3110 REMARK 3 L33: 1.0606 L12: -1.0304 REMARK 3 L13: -0.6402 L23: 0.1022 REMARK 3 S TENSOR REMARK 3 S11: -0.0479 S12: 0.0149 S13: -0.0767 REMARK 3 S21: -0.0321 S22: 0.0351 S23: 0.0365 REMARK 3 S31: -0.0580 S32: -0.1363 S33: 0.0121 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9ZWV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JAN-26. REMARK 100 THE DEPOSITION ID IS D_1000303758. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-AUG-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.920105 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 S 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29595 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.260 REMARK 200 RESOLUTION RANGE LOW (A) : 33.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.12800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.26 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 1.74700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS WERE GROWN IN 20% PEG 3350, REMARK 280 0.2 M AMMONIUM SULFATE, 0.1 M MES/IMIDAZOLE (PH 6.0), 100 MM MG2+ REMARK 280 , 2 MM ATP, 10% ISOPROPANOL, AND 5% PEG 400, AND WERE SOAKED FOR REMARK 280 16 H IN THE SAME SOLUTION SUPPLEMENTED WITH 5 MM ATP AND 1 MM REMARK 280 CAA., VAPOR DIFFUSION, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 51.86600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.15700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 56.56700 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 51.86600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.15700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 56.56700 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 51.86600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 53.15700 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 56.56700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 51.86600 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 53.15700 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 56.56700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 414 REMARK 465 SER A 415 REMARK 465 HIS A 416 REMARK 465 MET A 417 REMARK 465 ALA A 418 REMARK 465 THR A 419 REMARK 465 ASP A 420 REMARK 465 TYR A 421 REMARK 465 LYS A 422 REMARK 465 ASP A 423 REMARK 465 ASP A 424 REMARK 465 ASP A 425 REMARK 465 ASP A 426 REMARK 465 LYS A 427 REMARK 465 SER A 428 REMARK 465 GLN A 429 REMARK 465 VAL A 430 REMARK 465 VAL A 431 REMARK 465 ARG A 432 REMARK 465 LYS A 433 REMARK 465 LYS A 590 REMARK 465 ILE A 591 REMARK 465 GLU A 592 REMARK 465 ARG A 593 REMARK 465 ILE A 594 REMARK 465 GLY B 414 REMARK 465 SER B 415 REMARK 465 HIS B 416 REMARK 465 MET B 417 REMARK 465 ALA B 418 REMARK 465 THR B 419 REMARK 465 ASP B 420 REMARK 465 TYR B 421 REMARK 465 LYS B 422 REMARK 465 ASP B 423 REMARK 465 ASP B 424 REMARK 465 ASP B 425 REMARK 465 ASP B 426 REMARK 465 LYS B 427 REMARK 465 SER B 428 REMARK 465 GLN B 429 REMARK 465 VAL B 430 REMARK 465 VAL B 431 REMARK 465 ARG B 432 REMARK 465 LYS B 433 REMARK 465 LYS B 434 REMARK 465 THR B 435 REMARK 465 ARG B 593 REMARK 465 ILE B 594 REMARK 465 GLY C 414 REMARK 465 SER C 415 REMARK 465 HIS C 416 REMARK 465 MET C 417 REMARK 465 ALA C 418 REMARK 465 THR C 419 REMARK 465 ASP C 420 REMARK 465 TYR C 421 REMARK 465 LYS C 422 REMARK 465 ASP C 423 REMARK 465 ASP C 424 REMARK 465 ASP C 425 REMARK 465 ASP C 426 REMARK 465 LYS C 427 REMARK 465 SER C 428 REMARK 465 GLN C 429 REMARK 465 VAL C 430 REMARK 465 VAL C 431 REMARK 465 ARG C 432 REMARK 465 GLU C 589 REMARK 465 LYS C 590 REMARK 465 ILE C 591 REMARK 465 GLU C 592 REMARK 465 ARG C 593 REMARK 465 ILE C 594 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 435 32.96 -86.97 REMARK 500 ASP B 514 68.15 -103.04 REMARK 500 ASP B 543 65.27 -102.33 REMARK 500 GLN C 483 67.54 -114.34 REMARK 500 ASP C 543 72.31 -103.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A2001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 454 OG REMARK 620 2 ATP A2002 O2B 88.8 REMARK 620 3 ATP A2002 O2G 178.0 89.5 REMARK 620 4 HOH A2105 O 90.5 91.5 88.6 REMARK 620 5 HOH A2117 O 87.6 173.9 94.2 93.5 REMARK 620 6 HOH A2127 O 89.0 87.5 91.9 178.8 87.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B2001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 454 OG REMARK 620 2 ATP B2002 O2G 174.9 REMARK 620 3 ATP B2002 O2B 82.9 92.4 REMARK 620 4 HOH B2110 O 88.5 93.2 87.4 REMARK 620 5 HOH B2114 O 88.7 89.5 91.0 176.9 REMARK 620 6 HOH B2121 O 89.1 95.6 171.6 94.9 86.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C2001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER C 454 OG REMARK 620 2 ATP C2002 O2B 89.6 REMARK 620 3 ATP C2002 O2G 176.9 90.6 REMARK 620 4 HOH C2105 O 85.2 87.4 91.7 REMARK 620 5 HOH C2120 O 88.9 88.6 94.2 172.9 REMARK 620 6 HOH C2139 O 88.6 178.2 91.2 92.8 91.0 REMARK 620 N 1 2 3 4 5 DBREF 9ZWV A 428 594 UNP Q86UW6 N4BP2_HUMAN 428 594 DBREF 9ZWV B 428 594 UNP Q86UW6 N4BP2_HUMAN 428 594 DBREF 9ZWV C 428 594 UNP Q86UW6 N4BP2_HUMAN 428 594 DBREF 9ZWV D 1 3 PDB 9ZWV 9ZWV 1 3 DBREF 9ZWV E 1 3 PDB 9ZWV 9ZWV 1 3 DBREF 9ZWV F 1 3 PDB 9ZWV 9ZWV 1 3 SEQADV 9ZWV GLY A 414 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWV SER A 415 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWV HIS A 416 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWV MET A 417 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWV ALA A 418 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWV THR A 419 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWV ASP A 420 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWV TYR A 421 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWV LYS A 422 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWV ASP A 423 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWV ASP A 424 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWV ASP A 425 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWV ASP A 426 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWV LYS A 427 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWV GLY B 414 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWV SER B 415 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWV HIS B 416 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWV MET B 417 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWV ALA B 418 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWV THR B 419 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWV ASP B 420 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWV TYR B 421 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWV LYS B 422 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWV ASP B 423 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWV ASP B 424 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWV ASP B 425 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWV ASP B 426 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWV LYS B 427 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWV GLY C 414 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWV SER C 415 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWV HIS C 416 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWV MET C 417 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWV ALA C 418 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWV THR C 419 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWV ASP C 420 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWV TYR C 421 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWV LYS C 422 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWV ASP C 423 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWV ASP C 424 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWV ASP C 425 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWV ASP C 426 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWV LYS C 427 UNP Q86UW6 EXPRESSION TAG SEQRES 1 A 181 GLY SER HIS MET ALA THR ASP TYR LYS ASP ASP ASP ASP SEQRES 2 A 181 LYS SER GLN VAL VAL ARG LYS LYS THR SER TYR VAL GLY SEQRES 3 A 181 LEU VAL LEU VAL LEU LEU ARG GLY LEU PRO GLY SER GLY SEQRES 4 A 181 LYS SER PHE LEU ALA ARG THR LEU GLN GLU ASP ASN PRO SEQRES 5 A 181 SER GLY VAL ILE LEU SER THR ASP ASP TYR PHE TYR ILE SEQRES 6 A 181 ASN GLY GLN TYR GLN PHE ASP VAL LYS TYR LEU GLY GLU SEQRES 7 A 181 ALA HIS GLU TRP ASN GLN ASN ARG ALA LYS GLU ALA PHE SEQRES 8 A 181 GLU LYS LYS ILE SER PRO ILE ILE ILE ASP ASN THR ASN SEQRES 9 A 181 LEU GLN ALA TRP GLU MET LYS PRO TYR VAL ALA LEU SER SEQRES 10 A 181 GLN LYS HIS LYS TYR LYS VAL LEU PHE ARG GLU PRO ASP SEQRES 11 A 181 THR TRP TRP LYS PHE LYS PRO LYS GLU LEU ALA ARG ARG SEQRES 12 A 181 ASN ILE HIS GLY VAL SER LYS GLU LYS ILE THR ARG MET SEQRES 13 A 181 LEU GLU HIS TYR GLN ARG PHE VAL SER VAL PRO ILE ILE SEQRES 14 A 181 MET SER SER SER VAL PRO GLU LYS ILE GLU ARG ILE SEQRES 1 B 181 GLY SER HIS MET ALA THR ASP TYR LYS ASP ASP ASP ASP SEQRES 2 B 181 LYS SER GLN VAL VAL ARG LYS LYS THR SER TYR VAL GLY SEQRES 3 B 181 LEU VAL LEU VAL LEU LEU ARG GLY LEU PRO GLY SER GLY SEQRES 4 B 181 LYS SER PHE LEU ALA ARG THR LEU GLN GLU ASP ASN PRO SEQRES 5 B 181 SER GLY VAL ILE LEU SER THR ASP ASP TYR PHE TYR ILE SEQRES 6 B 181 ASN GLY GLN TYR GLN PHE ASP VAL LYS TYR LEU GLY GLU SEQRES 7 B 181 ALA HIS GLU TRP ASN GLN ASN ARG ALA LYS GLU ALA PHE SEQRES 8 B 181 GLU LYS LYS ILE SER PRO ILE ILE ILE ASP ASN THR ASN SEQRES 9 B 181 LEU GLN ALA TRP GLU MET LYS PRO TYR VAL ALA LEU SER SEQRES 10 B 181 GLN LYS HIS LYS TYR LYS VAL LEU PHE ARG GLU PRO ASP SEQRES 11 B 181 THR TRP TRP LYS PHE LYS PRO LYS GLU LEU ALA ARG ARG SEQRES 12 B 181 ASN ILE HIS GLY VAL SER LYS GLU LYS ILE THR ARG MET SEQRES 13 B 181 LEU GLU HIS TYR GLN ARG PHE VAL SER VAL PRO ILE ILE SEQRES 14 B 181 MET SER SER SER VAL PRO GLU LYS ILE GLU ARG ILE SEQRES 1 C 181 GLY SER HIS MET ALA THR ASP TYR LYS ASP ASP ASP ASP SEQRES 2 C 181 LYS SER GLN VAL VAL ARG LYS LYS THR SER TYR VAL GLY SEQRES 3 C 181 LEU VAL LEU VAL LEU LEU ARG GLY LEU PRO GLY SER GLY SEQRES 4 C 181 LYS SER PHE LEU ALA ARG THR LEU GLN GLU ASP ASN PRO SEQRES 5 C 181 SER GLY VAL ILE LEU SER THR ASP ASP TYR PHE TYR ILE SEQRES 6 C 181 ASN GLY GLN TYR GLN PHE ASP VAL LYS TYR LEU GLY GLU SEQRES 7 C 181 ALA HIS GLU TRP ASN GLN ASN ARG ALA LYS GLU ALA PHE SEQRES 8 C 181 GLU LYS LYS ILE SER PRO ILE ILE ILE ASP ASN THR ASN SEQRES 9 C 181 LEU GLN ALA TRP GLU MET LYS PRO TYR VAL ALA LEU SER SEQRES 10 C 181 GLN LYS HIS LYS TYR LYS VAL LEU PHE ARG GLU PRO ASP SEQRES 11 C 181 THR TRP TRP LYS PHE LYS PRO LYS GLU LEU ALA ARG ARG SEQRES 12 C 181 ASN ILE HIS GLY VAL SER LYS GLU LYS ILE THR ARG MET SEQRES 13 C 181 LEU GLU HIS TYR GLN ARG PHE VAL SER VAL PRO ILE ILE SEQRES 14 C 181 MET SER SER SER VAL PRO GLU LYS ILE GLU ARG ILE SEQRES 1 D 3 C A A SEQRES 1 E 3 C A A SEQRES 1 F 3 C A A HET MG A2001 1 HET ATP A2002 38 HET SO4 A2003 5 HET MG B2001 1 HET ATP B2002 38 HET SO4 B2003 5 HET SO4 B2004 5 HET IPA B2005 12 HET MG C2001 1 HET ATP C2002 38 HET SO4 C2003 5 HET IPA C2004 12 HET EDO C2005 10 HETNAM MG MAGNESIUM ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM SO4 SULFATE ION HETNAM IPA ISOPROPYL ALCOHOL HETNAM EDO 1,2-ETHANEDIOL HETSYN IPA 2-PROPANOL HETSYN EDO ETHYLENE GLYCOL FORMUL 7 MG 3(MG 2+) FORMUL 8 ATP 3(C10 H16 N5 O13 P3) FORMUL 9 SO4 4(O4 S 2-) FORMUL 14 IPA 2(C3 H8 O) FORMUL 19 EDO C2 H6 O2 FORMUL 20 HOH *159(H2 O) HELIX 1 AA1 GLY A 452 ASN A 464 1 13 HELIX 2 AA2 SER A 471 TYR A 475 5 5 HELIX 3 AA3 ASP A 485 LYS A 487 5 3 HELIX 4 AA4 TYR A 488 LYS A 506 1 19 HELIX 5 AA5 GLN A 519 HIS A 533 1 15 HELIX 6 AA6 LYS A 549 ASN A 557 1 9 HELIX 7 AA7 SER A 562 HIS A 572 1 11 HELIX 8 AA8 SER A 578 SER A 585 1 8 HELIX 9 AA9 GLY B 452 ASN B 464 1 13 HELIX 10 AB1 SER B 471 TYR B 475 5 5 HELIX 11 AB2 ASP B 485 LYS B 487 5 3 HELIX 12 AB3 TYR B 488 LYS B 506 1 19 HELIX 13 AB4 GLN B 519 GLU B 522 5 4 HELIX 14 AB5 MET B 523 HIS B 533 1 11 HELIX 15 AB6 LYS B 549 ASN B 557 1 9 HELIX 16 AB7 SER B 562 HIS B 572 1 11 HELIX 17 AB8 SER B 578 SER B 585 1 8 HELIX 18 AB9 GLY C 452 ASN C 464 1 13 HELIX 19 AC1 SER C 471 TYR C 475 5 5 HELIX 20 AC2 ASP C 485 LYS C 487 5 3 HELIX 21 AC3 TYR C 488 LYS C 506 1 19 HELIX 22 AC4 GLN C 519 HIS C 533 1 15 HELIX 23 AC5 LYS C 549 ASN C 557 1 9 HELIX 24 AC6 SER C 562 HIS C 572 1 11 HELIX 25 AC7 SER C 578 SER C 584 1 7 SHEET 1 AA1 4 VAL A 468 LEU A 470 0 SHEET 2 AA1 4 ILE A 511 ILE A 513 1 O ILE A 512 N LEU A 470 SHEET 3 AA1 4 VAL A 441 LEU A 445 1 N VAL A 443 O ILE A 511 SHEET 4 AA1 4 LYS A 536 ARG A 540 1 O LYS A 536 N LEU A 442 SHEET 1 AA2 2 TYR A 477 ILE A 478 0 SHEET 2 AA2 2 GLN A 481 TYR A 482 -1 O GLN A 481 N ILE A 478 SHEET 1 AA3 4 VAL B 468 LEU B 470 0 SHEET 2 AA3 4 ILE B 511 ILE B 513 1 O ILE B 512 N LEU B 470 SHEET 3 AA3 4 VAL B 441 LEU B 445 1 N VAL B 443 O ILE B 513 SHEET 4 AA3 4 LYS B 536 ARG B 540 1 O LEU B 538 N LEU B 444 SHEET 1 AA4 2 TYR B 477 ILE B 478 0 SHEET 2 AA4 2 GLN B 481 TYR B 482 -1 O GLN B 481 N ILE B 478 SHEET 1 AA5 4 VAL C 468 LEU C 470 0 SHEET 2 AA5 4 ILE C 511 ILE C 513 1 O ILE C 512 N LEU C 470 SHEET 3 AA5 4 VAL C 441 LEU C 445 1 N VAL C 443 O ILE C 513 SHEET 4 AA5 4 LYS C 536 ARG C 540 1 O LYS C 536 N LEU C 442 SHEET 1 AA6 2 TYR C 477 ILE C 478 0 SHEET 2 AA6 2 GLN C 481 TYR C 482 -1 O GLN C 481 N ILE C 478 LINK OG SER A 454 MG MG A2001 1555 1555 2.01 LINK MG MG A2001 O2B ATP A2002 1555 1555 2.20 LINK MG MG A2001 O2G ATP A2002 1555 1555 2.01 LINK MG MG A2001 O HOH A2105 1555 1555 2.21 LINK MG MG A2001 O HOH A2117 1555 1555 1.98 LINK MG MG A2001 O HOH A2127 1555 1555 2.18 LINK OG SER B 454 MG MG B2001 1555 1555 2.14 LINK MG MG B2001 O2G ATP B2002 1555 1555 1.80 LINK MG MG B2001 O2B ATP B2002 1555 1555 2.12 LINK MG MG B2001 O HOH B2110 1555 1555 2.13 LINK MG MG B2001 O HOH B2114 1555 1555 2.09 LINK MG MG B2001 O HOH B2121 1555 1555 2.05 LINK OG SER C 454 MG MG C2001 1555 1555 2.07 LINK MG MG C2001 O2B ATP C2002 1555 1555 2.13 LINK MG MG C2001 O2G ATP C2002 1555 1555 1.94 LINK MG MG C2001 O HOH C2105 1555 1555 2.01 LINK MG MG C2001 O HOH C2120 1555 1555 2.02 LINK MG MG C2001 O HOH C2139 1555 1555 2.17 CISPEP 1 SER A 509 PRO A 510 0 -2.63 CISPEP 2 SER B 509 PRO B 510 0 -3.38 CISPEP 3 SER C 509 PRO C 510 0 -2.37 CRYST1 103.732 106.314 113.134 90.00 90.00 90.00 I 2 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009640 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009406 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008839 0.00000 CONECT 315 8071 CONECT 2863 8115 CONECT 5525 8176 CONECT 8071 315 8074 8078 8246 CONECT 8071 8258 8268 CONECT 8072 8073 8074 8075 8079 CONECT 8073 8072 CONECT 8074 8071 8072 CONECT 8075 8072 CONECT 8076 8077 8078 8079 8083 CONECT 8077 8076 CONECT 8078 8071 8076 CONECT 8079 8072 8076 CONECT 8080 8081 8082 8083 8084 CONECT 8081 8080 CONECT 8082 8080 CONECT 8083 8076 8080 CONECT 8084 8080 8085 CONECT 8085 8084 8086 8103 8104 CONECT 8086 8085 8087 8088 8105 CONECT 8087 8086 8092 CONECT 8088 8086 8089 8090 8106 CONECT 8089 8088 CONECT 8090 8088 8091 8092 8107 CONECT 8091 8090 8108 CONECT 8092 8087 8090 8093 8109 CONECT 8093 8092 8094 8102 CONECT 8094 8093 8095 CONECT 8095 8094 8096 CONECT 8096 8095 8097 8102 CONECT 8097 8096 8098 8099 CONECT 8098 8097 CONECT 8099 8097 8100 CONECT 8100 8099 8101 CONECT 8101 8100 8102 CONECT 8102 8093 8096 8101 CONECT 8103 8085 CONECT 8104 8085 CONECT 8105 8086 CONECT 8106 8088 CONECT 8107 8090 CONECT 8108 8091 CONECT 8109 8092 CONECT 8110 8111 8112 8113 8114 CONECT 8111 8110 CONECT 8112 8110 CONECT 8113 8110 CONECT 8114 8110 CONECT 8115 2863 8118 8122 8303 CONECT 8115 8307 8314 CONECT 8116 8117 8118 8119 8123 CONECT 8117 8116 CONECT 8118 8115 8116 CONECT 8119 8116 CONECT 8120 8121 8122 8123 8127 CONECT 8121 8120 CONECT 8122 8115 8120 CONECT 8123 8116 8120 CONECT 8124 8125 8126 8127 8128 CONECT 8125 8124 CONECT 8126 8124 CONECT 8127 8120 8124 CONECT 8128 8124 8129 CONECT 8129 8128 8130 8147 8148 CONECT 8130 8129 8131 8132 8149 CONECT 8131 8130 8136 CONECT 8132 8130 8133 8134 8150 CONECT 8133 8132 CONECT 8134 8132 8135 8136 8151 CONECT 8135 8134 8152 CONECT 8136 8131 8134 8137 8153 CONECT 8137 8136 8138 8146 CONECT 8138 8137 8139 CONECT 8139 8138 8140 CONECT 8140 8139 8141 8146 CONECT 8141 8140 8142 8143 CONECT 8142 8141 CONECT 8143 8141 8144 CONECT 8144 8143 8145 CONECT 8145 8144 8146 CONECT 8146 8137 8140 8145 CONECT 8147 8129 CONECT 8148 8129 CONECT 8149 8130 CONECT 8150 8132 CONECT 8151 8134 CONECT 8152 8135 CONECT 8153 8136 CONECT 8154 8155 8156 8157 8158 CONECT 8155 8154 CONECT 8156 8154 CONECT 8157 8154 CONECT 8158 8154 CONECT 8159 8160 8161 8162 8163 CONECT 8160 8159 CONECT 8161 8159 CONECT 8162 8159 CONECT 8163 8159 CONECT 8164 8165 8168 8169 8170 CONECT 8165 8164 8166 8167 8171 CONECT 8166 8165 8172 8173 8174 CONECT 8167 8165 8175 CONECT 8168 8164 CONECT 8169 8164 CONECT 8170 8164 CONECT 8171 8165 CONECT 8172 8166 CONECT 8173 8166 CONECT 8174 8166 CONECT 8175 8167 CONECT 8176 5525 8179 8183 8337 CONECT 8176 8352 8371 CONECT 8177 8178 8179 8180 8184 CONECT 8178 8177 CONECT 8179 8176 8177 CONECT 8180 8177 CONECT 8181 8182 8183 8184 8188 CONECT 8182 8181 CONECT 8183 8176 8181 CONECT 8184 8177 8181 CONECT 8185 8186 8187 8188 8189 CONECT 8186 8185 CONECT 8187 8185 CONECT 8188 8181 8185 CONECT 8189 8185 8190 CONECT 8190 8189 8191 8208 8209 CONECT 8191 8190 8192 8193 8210 CONECT 8192 8191 8197 CONECT 8193 8191 8194 8195 8211 CONECT 8194 8193 CONECT 8195 8193 8196 8197 8212 CONECT 8196 8195 8213 CONECT 8197 8192 8195 8198 8214 CONECT 8198 8197 8199 8207 CONECT 8199 8198 8200 CONECT 8200 8199 8201 CONECT 8201 8200 8202 8207 CONECT 8202 8201 8203 8204 CONECT 8203 8202 CONECT 8204 8202 8205 CONECT 8205 8204 8206 CONECT 8206 8205 8207 CONECT 8207 8198 8201 8206 CONECT 8208 8190 CONECT 8209 8190 CONECT 8210 8191 CONECT 8211 8193 CONECT 8212 8195 CONECT 8213 8196 CONECT 8214 8197 CONECT 8215 8216 8217 8218 8219 CONECT 8216 8215 CONECT 8217 8215 CONECT 8218 8215 CONECT 8219 8215 CONECT 8220 8221 8224 8225 8226 CONECT 8221 8220 8222 8223 8227 CONECT 8222 8221 8228 8229 8230 CONECT 8223 8221 8231 CONECT 8224 8220 CONECT 8225 8220 CONECT 8226 8220 CONECT 8227 8221 CONECT 8228 8222 CONECT 8229 8222 CONECT 8230 8222 CONECT 8231 8223 CONECT 8232 8233 8234 8236 8237 CONECT 8233 8232 8238 CONECT 8234 8232 8235 8239 8240 CONECT 8235 8234 8241 CONECT 8236 8232 CONECT 8237 8232 CONECT 8238 8233 CONECT 8239 8234 CONECT 8240 8234 CONECT 8241 8235 CONECT 8246 8071 CONECT 8258 8071 CONECT 8268 8071 CONECT 8303 8115 CONECT 8307 8115 CONECT 8314 8115 CONECT 8337 8176 CONECT 8352 8176 CONECT 8371 8176 MASTER 384 0 13 25 18 0 0 6 4344 6 186 45 END