HEADER TRANSFERASE 03-JAN-26 9ZWX TITLE CRYSTAL STRUCTURE OF THE N4BP2 POLYNUCLEOTIDE KINASE DOMAIN COMPLEXED TITLE 2 WITH ATP, MG, AND THE TRINUCLEOTIDE SUBSTRATE CGA. COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEDD4-BINDING PROTEIN 2; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: POLYNUCLEOTIDE KINASE DOMAIN; COMPND 5 SYNONYM: N4BP2,BCL-3-BINDING PROTEIN; COMPND 6 EC: 3.-.-.-; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: NEDD4-BINDING PROTEIN 2; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: 5'-OH RNA (5'-R(CPGPA)-3'); COMPND 11 CHAIN: D, E, F; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: N4BP2, B3BP, KIAA1413; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS TRANSFERASE; POLYNUCLEOTIDE KINASE; CATALYSIS; ENZYME REACTION; KEYWDS 2 CATALYTIC MECHANISM; PHOSPHORYL TRANSFER, RNA, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.WANG,R.E.STANLEY REVDAT 1 23-SEP-26 9ZWX 0 JRNL AUTH H.WANG,R.E.STANLEY JRNL TITL STRUCTURE, SPECIFICITY, AND CATALYTIC MECHANISM OF THE JRNL TITL 2 POLYNUCLEOTIDE KINASE DOMAINS FROM THE HUMAN N4BP2 KINASE JRNL TITL 3 FAMILY JRNL REF NAT COMMUN 2026 JRNL REFN ESSN 2041-1723 REMARK 2 REMARK 2 RESOLUTION. 2.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 2.0_5936 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 34958 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1760 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.0900 - 4.9900 0.94 2598 129 0.1795 0.1956 REMARK 3 2 4.9900 - 3.9600 0.95 2519 160 0.1461 0.1764 REMARK 3 3 3.9600 - 3.4600 0.97 2549 128 0.1627 0.1782 REMARK 3 4 3.4600 - 3.1500 0.98 2580 127 0.1906 0.2415 REMARK 3 5 3.1500 - 2.9200 0.98 2542 141 0.1930 0.2095 REMARK 3 6 2.9200 - 2.7500 0.98 2584 123 0.2041 0.2708 REMARK 3 7 2.7500 - 2.6100 0.98 2552 131 0.2050 0.2351 REMARK 3 8 2.6100 - 2.5000 0.98 2603 111 0.2093 0.2443 REMARK 3 9 2.5000 - 2.4000 0.98 2523 133 0.2156 0.2800 REMARK 3 10 2.4000 - 2.3200 0.98 2529 164 0.2142 0.2407 REMARK 3 11 2.3200 - 2.2500 0.98 2576 129 0.2174 0.3128 REMARK 3 12 2.2500 - 2.1800 0.98 2493 146 0.2387 0.2551 REMARK 3 13 2.1800 - 2.1200 0.98 2550 138 0.2416 0.2675 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.215 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.365 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.04 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4385 REMARK 3 ANGLE : 0.634 6011 REMARK 3 CHIRALITY : 0.044 632 REMARK 3 PLANARITY : 0.005 702 REMARK 3 DIHEDRAL : 13.688 1662 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -25.2234 -23.6590 -25.6955 REMARK 3 T TENSOR REMARK 3 T11: 0.2363 T22: 0.2287 REMARK 3 T33: 0.2396 T12: 0.0296 REMARK 3 T13: 0.0072 T23: -0.0161 REMARK 3 L TENSOR REMARK 3 L11: 0.8719 L22: 1.0034 REMARK 3 L33: 0.4831 L12: -0.6062 REMARK 3 L13: -0.1170 L23: -0.0787 REMARK 3 S TENSOR REMARK 3 S11: -0.0228 S12: 0.0402 S13: -0.0668 REMARK 3 S21: -0.0734 S22: -0.0024 S23: 0.0208 REMARK 3 S31: -0.0338 S32: -0.0953 S33: 0.0262 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9ZWX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JAN-26. REMARK 100 THE DEPOSITION ID IS D_1000303764. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-SEP-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.920119 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35066 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.120 REMARK 200 RESOLUTION RANGE LOW (A) : 33.095 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.11400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.12 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.74400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS WERE GROWN IN 20% PEG 3350, REMARK 280 0.2 M AMMONIUM SULFATE, 0.1 M MES/IMIDAZOLE (PH 6.0), 100 MM MG2+ REMARK 280 , 2 MM ATP, 10% ISOPROPANOL, AND 5% PEG 400, AND WERE SOAKED FOR REMARK 280 16 H IN THE SAME SOLUTION SUPPLEMENTED WITH 5 MM ATP AND 1 MM REMARK 280 CGA., VAPOR DIFFUSION, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 52.23200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.21000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 56.60100 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 52.23200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.21000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 56.60100 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 52.23200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 53.21000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 56.60100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 52.23200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 53.21000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 56.60100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 414 REMARK 465 SER A 415 REMARK 465 HIS A 416 REMARK 465 MET A 417 REMARK 465 ALA A 418 REMARK 465 THR A 419 REMARK 465 ASP A 420 REMARK 465 TYR A 421 REMARK 465 LYS A 422 REMARK 465 ASP A 423 REMARK 465 ASP A 424 REMARK 465 ASP A 425 REMARK 465 ASP A 426 REMARK 465 LYS A 427 REMARK 465 SER A 428 REMARK 465 GLN A 429 REMARK 465 VAL A 430 REMARK 465 VAL A 431 REMARK 465 ARG A 432 REMARK 465 LYS A 433 REMARK 465 LYS A 590 REMARK 465 ILE A 591 REMARK 465 GLU A 592 REMARK 465 ARG A 593 REMARK 465 ILE A 594 REMARK 465 GLU A 595 REMARK 465 GLY B 414 REMARK 465 SER B 415 REMARK 465 HIS B 416 REMARK 465 MET B 417 REMARK 465 ALA B 418 REMARK 465 THR B 419 REMARK 465 ASP B 420 REMARK 465 TYR B 421 REMARK 465 LYS B 422 REMARK 465 ASP B 423 REMARK 465 ASP B 424 REMARK 465 ASP B 425 REMARK 465 ASP B 426 REMARK 465 LYS B 427 REMARK 465 SER B 428 REMARK 465 GLN B 429 REMARK 465 VAL B 430 REMARK 465 VAL B 431 REMARK 465 ARG B 432 REMARK 465 LYS B 433 REMARK 465 LYS B 434 REMARK 465 THR B 435 REMARK 465 GLY C 414 REMARK 465 SER C 415 REMARK 465 HIS C 416 REMARK 465 MET C 417 REMARK 465 ALA C 418 REMARK 465 THR C 419 REMARK 465 ASP C 420 REMARK 465 TYR C 421 REMARK 465 LYS C 422 REMARK 465 ASP C 423 REMARK 465 ASP C 424 REMARK 465 ASP C 425 REMARK 465 ASP C 426 REMARK 465 LYS C 427 REMARK 465 SER C 428 REMARK 465 GLN C 429 REMARK 465 VAL C 430 REMARK 465 VAL C 431 REMARK 465 ARG C 432 REMARK 465 LYS C 590 REMARK 465 ILE C 591 REMARK 465 GLU C 592 REMARK 465 ARG C 593 REMARK 465 ILE C 594 REMARK 465 GLU C 595 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 514 68.42 -103.11 REMARK 500 ASP B 514 66.60 -104.86 REMARK 500 LYS B 534 70.04 58.81 REMARK 500 ASP B 543 65.76 -105.74 REMARK 500 GLN C 483 64.77 -110.07 REMARK 500 ASP C 514 68.35 -101.74 REMARK 500 ASP C 543 75.20 -102.52 REMARK 500 PRO C 588 -155.21 -85.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C2249 DISTANCE = 6.36 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A2001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 454 OG REMARK 620 2 ATP A2002 O2B 90.6 REMARK 620 3 ATP A2002 O2G 178.3 90.9 REMARK 620 4 HOH A2117 O 88.3 87.6 92.6 REMARK 620 5 HOH A2128 O 87.8 90.6 91.3 175.7 REMARK 620 6 HOH A2163 O 87.8 176.5 90.7 89.2 92.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B2001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 454 OG REMARK 620 2 ATP B2002 O2G 178.6 REMARK 620 3 ATP B2002 O2B 91.7 89.1 REMARK 620 4 HOH B2111 O 91.1 87.7 91.0 REMARK 620 5 HOH B2134 O 89.3 92.0 90.2 178.7 REMARK 620 6 HOH B2164 O 89.0 90.3 178.1 87.1 91.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C2001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER C 454 OG REMARK 620 2 ATP C2002 O2B 90.1 REMARK 620 3 ATP C2002 O2G 178.0 89.5 REMARK 620 4 HOH C2129 O 89.1 84.6 92.8 REMARK 620 5 HOH C2139 O 89.7 88.8 88.4 173.3 REMARK 620 6 HOH C2171 O 89.4 177.2 91.1 92.7 93.9 REMARK 620 N 1 2 3 4 5 DBREF 9ZWX A 428 595 UNP Q86UW6 N4BP2_HUMAN 428 595 DBREF 9ZWX B 428 595 UNP Q86UW6 N4BP2_HUMAN 428 595 DBREF 9ZWX C 428 595 UNP Q86UW6 N4BP2_HUMAN 428 595 DBREF 9ZWX D 1 3 PDB 9ZWX 9ZWX 1 3 DBREF 9ZWX E 1 3 PDB 9ZWX 9ZWX 1 3 DBREF 9ZWX F 1 3 PDB 9ZWX 9ZWX 1 3 SEQADV 9ZWX GLY A 414 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWX SER A 415 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWX HIS A 416 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWX MET A 417 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWX ALA A 418 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWX THR A 419 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWX ASP A 420 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWX TYR A 421 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWX LYS A 422 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWX ASP A 423 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWX ASP A 424 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWX ASP A 425 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWX ASP A 426 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWX LYS A 427 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWX GLY B 414 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWX SER B 415 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWX HIS B 416 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWX MET B 417 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWX ALA B 418 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWX THR B 419 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWX ASP B 420 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWX TYR B 421 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWX LYS B 422 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWX ASP B 423 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWX ASP B 424 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWX ASP B 425 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWX ASP B 426 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWX LYS B 427 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWX GLY C 414 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWX SER C 415 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWX HIS C 416 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWX MET C 417 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWX ALA C 418 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWX THR C 419 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWX ASP C 420 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWX TYR C 421 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWX LYS C 422 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWX ASP C 423 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWX ASP C 424 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWX ASP C 425 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWX ASP C 426 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWX LYS C 427 UNP Q86UW6 EXPRESSION TAG SEQRES 1 A 182 GLY SER HIS MET ALA THR ASP TYR LYS ASP ASP ASP ASP SEQRES 2 A 182 LYS SER GLN VAL VAL ARG LYS LYS THR SER TYR VAL GLY SEQRES 3 A 182 LEU VAL LEU VAL LEU LEU ARG GLY LEU PRO GLY SER GLY SEQRES 4 A 182 LYS SER PHE LEU ALA ARG THR LEU GLN GLU ASP ASN PRO SEQRES 5 A 182 SER GLY VAL ILE LEU SER THR ASP ASP TYR PHE TYR ILE SEQRES 6 A 182 ASN GLY GLN TYR GLN PHE ASP VAL LYS TYR LEU GLY GLU SEQRES 7 A 182 ALA HIS GLU TRP ASN GLN ASN ARG ALA LYS GLU ALA PHE SEQRES 8 A 182 GLU LYS LYS ILE SER PRO ILE ILE ILE ASP ASN THR ASN SEQRES 9 A 182 LEU GLN ALA TRP GLU MET LYS PRO TYR VAL ALA LEU SER SEQRES 10 A 182 GLN LYS HIS LYS TYR LYS VAL LEU PHE ARG GLU PRO ASP SEQRES 11 A 182 THR TRP TRP LYS PHE LYS PRO LYS GLU LEU ALA ARG ARG SEQRES 12 A 182 ASN ILE HIS GLY VAL SER LYS GLU LYS ILE THR ARG MET SEQRES 13 A 182 LEU GLU HIS TYR GLN ARG PHE VAL SER VAL PRO ILE ILE SEQRES 14 A 182 MET SER SER SER VAL PRO GLU LYS ILE GLU ARG ILE GLU SEQRES 1 B 182 GLY SER HIS MET ALA THR ASP TYR LYS ASP ASP ASP ASP SEQRES 2 B 182 LYS SER GLN VAL VAL ARG LYS LYS THR SER TYR VAL GLY SEQRES 3 B 182 LEU VAL LEU VAL LEU LEU ARG GLY LEU PRO GLY SER GLY SEQRES 4 B 182 LYS SER PHE LEU ALA ARG THR LEU GLN GLU ASP ASN PRO SEQRES 5 B 182 SER GLY VAL ILE LEU SER THR ASP ASP TYR PHE TYR ILE SEQRES 6 B 182 ASN GLY GLN TYR GLN PHE ASP VAL LYS TYR LEU GLY GLU SEQRES 7 B 182 ALA HIS GLU TRP ASN GLN ASN ARG ALA LYS GLU ALA PHE SEQRES 8 B 182 GLU LYS LYS ILE SER PRO ILE ILE ILE ASP ASN THR ASN SEQRES 9 B 182 LEU GLN ALA TRP GLU MET LYS PRO TYR VAL ALA LEU SER SEQRES 10 B 182 GLN LYS HIS LYS TYR LYS VAL LEU PHE ARG GLU PRO ASP SEQRES 11 B 182 THR TRP TRP LYS PHE LYS PRO LYS GLU LEU ALA ARG ARG SEQRES 12 B 182 ASN ILE HIS GLY VAL SER LYS GLU LYS ILE THR ARG MET SEQRES 13 B 182 LEU GLU HIS TYR GLN ARG PHE VAL SER VAL PRO ILE ILE SEQRES 14 B 182 MET SER SER SER VAL PRO GLU LYS ILE GLU ARG ILE GLU SEQRES 1 C 182 GLY SER HIS MET ALA THR ASP TYR LYS ASP ASP ASP ASP SEQRES 2 C 182 LYS SER GLN VAL VAL ARG LYS LYS THR SER TYR VAL GLY SEQRES 3 C 182 LEU VAL LEU VAL LEU LEU ARG GLY LEU PRO GLY SER GLY SEQRES 4 C 182 LYS SER PHE LEU ALA ARG THR LEU GLN GLU ASP ASN PRO SEQRES 5 C 182 SER GLY VAL ILE LEU SER THR ASP ASP TYR PHE TYR ILE SEQRES 6 C 182 ASN GLY GLN TYR GLN PHE ASP VAL LYS TYR LEU GLY GLU SEQRES 7 C 182 ALA HIS GLU TRP ASN GLN ASN ARG ALA LYS GLU ALA PHE SEQRES 8 C 182 GLU LYS LYS ILE SER PRO ILE ILE ILE ASP ASN THR ASN SEQRES 9 C 182 LEU GLN ALA TRP GLU MET LYS PRO TYR VAL ALA LEU SER SEQRES 10 C 182 GLN LYS HIS LYS TYR LYS VAL LEU PHE ARG GLU PRO ASP SEQRES 11 C 182 THR TRP TRP LYS PHE LYS PRO LYS GLU LEU ALA ARG ARG SEQRES 12 C 182 ASN ILE HIS GLY VAL SER LYS GLU LYS ILE THR ARG MET SEQRES 13 C 182 LEU GLU HIS TYR GLN ARG PHE VAL SER VAL PRO ILE ILE SEQRES 14 C 182 MET SER SER SER VAL PRO GLU LYS ILE GLU ARG ILE GLU SEQRES 1 D 3 C G A SEQRES 1 E 3 C G A SEQRES 1 F 3 C G A HET MG A2001 1 HET ATP A2002 39 HET SO4 A2003 5 HET MG B2001 1 HET ATP B2002 39 HET SO4 B2003 5 HET SO4 B2004 5 HET SO4 B2005 5 HET MG C2001 1 HET ATP C2002 39 HET SO4 C2003 5 HETNAM MG MAGNESIUM ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM SO4 SULFATE ION FORMUL 7 MG 3(MG 2+) FORMUL 8 ATP 3(C10 H16 N5 O13 P3) FORMUL 9 SO4 5(O4 S 2-) FORMUL 18 HOH *405(H2 O) HELIX 1 AA1 GLY A 452 ASN A 464 1 13 HELIX 2 AA2 SER A 471 TYR A 475 5 5 HELIX 3 AA3 ASP A 485 LYS A 487 5 3 HELIX 4 AA4 TYR A 488 LYS A 506 1 19 HELIX 5 AA5 GLN A 519 HIS A 533 1 15 HELIX 6 AA6 LYS A 549 ASN A 557 1 9 HELIX 7 AA7 SER A 562 HIS A 572 1 11 HELIX 8 AA8 SER A 578 SER A 585 1 8 HELIX 9 AA9 GLY B 452 ASN B 464 1 13 HELIX 10 AB1 SER B 471 TYR B 475 5 5 HELIX 11 AB2 ASP B 485 LYS B 487 5 3 HELIX 12 AB3 TYR B 488 LYS B 506 1 19 HELIX 13 AB4 GLN B 519 HIS B 533 1 15 HELIX 14 AB5 LYS B 549 ASN B 557 1 9 HELIX 15 AB6 SER B 562 HIS B 572 1 11 HELIX 16 AB7 SER B 578 SER B 585 1 8 HELIX 17 AB8 GLY C 452 ASN C 464 1 13 HELIX 18 AB9 SER C 471 TYR C 475 5 5 HELIX 19 AC1 ASP C 485 LYS C 487 5 3 HELIX 20 AC2 TYR C 488 LYS C 506 1 19 HELIX 21 AC3 GLN C 519 HIS C 533 1 15 HELIX 22 AC4 LYS C 549 ASN C 557 1 9 HELIX 23 AC5 SER C 562 HIS C 572 1 11 HELIX 24 AC6 SER C 578 SER C 585 1 8 SHEET 1 AA1 4 VAL A 468 LEU A 470 0 SHEET 2 AA1 4 ILE A 511 ILE A 513 1 O ILE A 512 N LEU A 470 SHEET 3 AA1 4 VAL A 441 LEU A 445 1 N VAL A 443 O ILE A 511 SHEET 4 AA1 4 LYS A 536 ARG A 540 1 O LYS A 536 N LEU A 442 SHEET 1 AA2 2 TYR A 477 ILE A 478 0 SHEET 2 AA2 2 GLN A 481 TYR A 482 -1 O GLN A 481 N ILE A 478 SHEET 1 AA3 4 VAL B 468 LEU B 470 0 SHEET 2 AA3 4 ILE B 511 ILE B 513 1 O ILE B 512 N LEU B 470 SHEET 3 AA3 4 VAL B 441 LEU B 445 1 N VAL B 443 O ILE B 511 SHEET 4 AA3 4 LYS B 536 ARG B 540 1 O LEU B 538 N LEU B 444 SHEET 1 AA4 2 TYR B 477 ILE B 478 0 SHEET 2 AA4 2 GLN B 481 TYR B 482 -1 N GLN B 481 O ILE B 478 SHEET 1 AA5 4 VAL C 468 LEU C 470 0 SHEET 2 AA5 4 ILE C 511 ILE C 513 1 O ILE C 512 N LEU C 470 SHEET 3 AA5 4 VAL C 441 LEU C 445 1 N VAL C 443 O ILE C 511 SHEET 4 AA5 4 LYS C 536 ARG C 540 1 O LYS C 536 N LEU C 442 SHEET 1 AA6 2 TYR C 477 ILE C 478 0 SHEET 2 AA6 2 GLN C 481 TYR C 482 -1 O GLN C 481 N ILE C 478 LINK OG SER A 454 MG MG A2001 1555 1555 2.07 LINK MG MG A2001 O2B ATP A2002 1555 1555 2.03 LINK MG MG A2001 O2G ATP A2002 1555 1555 2.06 LINK MG MG A2001 O HOH A2117 1555 1555 2.15 LINK MG MG A2001 O HOH A2128 1555 1555 2.26 LINK MG MG A2001 O HOH A2163 1555 1555 2.24 LINK OG SER B 454 MG MG B2001 1555 1555 2.06 LINK MG MG B2001 O2G ATP B2002 1555 1555 2.02 LINK MG MG B2001 O2B ATP B2002 1555 1555 2.08 LINK MG MG B2001 O HOH B2111 1555 1555 2.08 LINK MG MG B2001 O HOH B2134 1555 1555 2.10 LINK MG MG B2001 O HOH B2164 1555 1555 2.09 LINK OG SER C 454 MG MG C2001 1555 1555 2.16 LINK MG MG C2001 O2B ATP C2002 1555 1555 2.10 LINK MG MG C2001 O2G ATP C2002 1555 1555 1.99 LINK MG MG C2001 O HOH C2129 1555 1555 2.12 LINK MG MG C2001 O HOH C2139 1555 1555 2.11 LINK MG MG C2001 O HOH C2171 1555 1555 2.09 CISPEP 1 SER A 509 PRO A 510 0 -3.41 CISPEP 2 SER B 509 PRO B 510 0 -4.78 CISPEP 3 SER C 509 PRO C 510 0 -2.40 CRYST1 104.464 106.420 113.202 90.00 90.00 90.00 I 2 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009573 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009397 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008834 0.00000 CONECT 315 8204 CONECT 2888 8249 CONECT 5608 8304 CONECT 8204 315 8207 8211 8365 CONECT 8204 8376 8411 CONECT 8205 8206 8207 8208 8212 CONECT 8206 8205 CONECT 8207 8204 8205 CONECT 8208 8205 CONECT 8209 8210 8211 8212 8216 CONECT 8210 8209 CONECT 8211 8204 8209 CONECT 8212 8205 8209 CONECT 8213 8214 8215 8216 8217 CONECT 8214 8213 CONECT 8215 8213 CONECT 8216 8209 8213 CONECT 8217 8213 8218 CONECT 8218 8217 8219 8236 8237 CONECT 8219 8218 8220 8221 8238 CONECT 8220 8219 8225 CONECT 8221 8219 8222 8223 8239 CONECT 8222 8221 8240 CONECT 8223 8221 8224 8225 8241 CONECT 8224 8223 8242 CONECT 8225 8220 8223 8226 8243 CONECT 8226 8225 8227 8235 CONECT 8227 8226 8228 CONECT 8228 8227 8229 CONECT 8229 8228 8230 8235 CONECT 8230 8229 8231 8232 CONECT 8231 8230 CONECT 8232 8230 8233 CONECT 8233 8232 8234 CONECT 8234 8233 8235 CONECT 8235 8226 8229 8234 CONECT 8236 8218 CONECT 8237 8218 CONECT 8238 8219 CONECT 8239 8221 CONECT 8240 8222 CONECT 8241 8223 CONECT 8242 8224 CONECT 8243 8225 CONECT 8244 8245 8246 8247 8248 CONECT 8245 8244 CONECT 8246 8244 CONECT 8247 8244 CONECT 8248 8244 CONECT 8249 2888 8252 8256 8465 CONECT 8249 8488 8518 CONECT 8250 8251 8252 8253 8257 CONECT 8251 8250 CONECT 8252 8249 8250 CONECT 8253 8250 CONECT 8254 8255 8256 8257 8261 CONECT 8255 8254 CONECT 8256 8249 8254 CONECT 8257 8250 8254 CONECT 8258 8259 8260 8261 8262 CONECT 8259 8258 CONECT 8260 8258 CONECT 8261 8254 8258 CONECT 8262 8258 8263 CONECT 8263 8262 8264 8281 8282 CONECT 8264 8263 8265 8266 8283 CONECT 8265 8264 8270 CONECT 8266 8264 8267 8268 8284 CONECT 8267 8266 8285 CONECT 8268 8266 8269 8270 8286 CONECT 8269 8268 8287 CONECT 8270 8265 8268 8271 8288 CONECT 8271 8270 8272 8280 CONECT 8272 8271 8273 CONECT 8273 8272 8274 CONECT 8274 8273 8275 8280 CONECT 8275 8274 8276 8277 CONECT 8276 8275 CONECT 8277 8275 8278 CONECT 8278 8277 8279 CONECT 8279 8278 8280 CONECT 8280 8271 8274 8279 CONECT 8281 8263 CONECT 8282 8263 CONECT 8283 8264 CONECT 8284 8266 CONECT 8285 8267 CONECT 8286 8268 CONECT 8287 8269 CONECT 8288 8270 CONECT 8289 8290 8291 8292 8293 CONECT 8290 8289 CONECT 8291 8289 CONECT 8292 8289 CONECT 8293 8289 CONECT 8294 8295 8296 8297 8298 CONECT 8295 8294 CONECT 8296 8294 CONECT 8297 8294 CONECT 8298 8294 CONECT 8299 8300 8301 8302 8303 CONECT 8300 8299 CONECT 8301 8299 CONECT 8302 8299 CONECT 8303 8299 CONECT 8304 5608 8307 8311 8601 CONECT 8304 8611 8643 CONECT 8305 8306 8307 8308 8312 CONECT 8306 8305 CONECT 8307 8304 8305 CONECT 8308 8305 CONECT 8309 8310 8311 8312 8316 CONECT 8310 8309 CONECT 8311 8304 8309 CONECT 8312 8305 8309 CONECT 8313 8314 8315 8316 8317 CONECT 8314 8313 CONECT 8315 8313 CONECT 8316 8309 8313 CONECT 8317 8313 8318 CONECT 8318 8317 8319 8336 8337 CONECT 8319 8318 8320 8321 8338 CONECT 8320 8319 8325 CONECT 8321 8319 8322 8323 8339 CONECT 8322 8321 8340 CONECT 8323 8321 8324 8325 8341 CONECT 8324 8323 8342 CONECT 8325 8320 8323 8326 8343 CONECT 8326 8325 8327 8335 CONECT 8327 8326 8328 CONECT 8328 8327 8329 CONECT 8329 8328 8330 8335 CONECT 8330 8329 8331 8332 CONECT 8331 8330 CONECT 8332 8330 8333 CONECT 8333 8332 8334 CONECT 8334 8333 8335 CONECT 8335 8326 8329 8334 CONECT 8336 8318 CONECT 8337 8318 CONECT 8338 8319 CONECT 8339 8321 CONECT 8340 8322 CONECT 8341 8323 CONECT 8342 8324 CONECT 8343 8325 CONECT 8344 8345 8346 8347 8348 CONECT 8345 8344 CONECT 8346 8344 CONECT 8347 8344 CONECT 8348 8344 CONECT 8365 8204 CONECT 8376 8204 CONECT 8411 8204 CONECT 8465 8249 CONECT 8488 8249 CONECT 8518 8249 CONECT 8601 8304 CONECT 8611 8304 CONECT 8643 8304 MASTER 417 0 11 24 18 0 0 6 4623 6 160 45 END