HEADER TRANSFERASE 03-JAN-26 9ZWY TITLE CRYSTAL STRUCTURE OF THE N4BP2 POLYNUCLEOTIDE KINASE DOMAIN COMPLEXED TITLE 2 WITH ATP, MG, AND THE TRINUCLEOTIDE SUBSTRATE CUA. COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEDD4-BINDING PROTEIN 2; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: POLYNUCLEOTIDE KINASE DOMAIN; COMPND 5 SYNONYM: N4BP2,BCL-3-BINDING PROTEIN; COMPND 6 EC: 3.-.-.-; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: NEDD4-BINDING PROTEIN 2; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: 5'-OH RNA (5'-R(CPUPA)-3'); COMPND 11 CHAIN: D, E, F; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: N4BP2, B3BP, KIAA1413; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS TRANSFERASE; POLYNUCLEOTIDE KINASE; CATALYSIS; ENZYME REACTION; KEYWDS 2 CATALYTIC MECHANISM; PHOSPHORYL TRANSFER, RNA, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.WANG,R.E.STANLEY REVDAT 1 23-SEP-26 9ZWY 0 JRNL AUTH H.WANG,R.E.STANLEY JRNL TITL STRUCTURE, SPECIFICITY, AND CATALYTIC MECHANISM OF THE JRNL TITL 2 POLYNUCLEOTIDE KINASE DOMAINS FROM THE HUMAN N4BP2 KINASE JRNL TITL 3 FAMILY JRNL REF NAT COMMUN 2026 JRNL REFN ESSN 2041-1723 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 2.0_5936 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 34728 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.660 REMARK 3 FREE R VALUE TEST SET COUNT : 1617 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.9800 - 4.7900 1.00 3074 148 0.1811 0.2022 REMARK 3 2 4.7900 - 3.8100 1.00 2903 196 0.1601 0.2056 REMARK 3 3 3.8100 - 3.3300 0.89 2571 146 0.1962 0.2397 REMARK 3 4 3.3300 - 3.0200 1.00 2913 156 0.2189 0.2407 REMARK 3 5 3.0200 - 2.8100 1.00 2927 116 0.2503 0.3242 REMARK 3 6 2.8100 - 2.6400 0.82 2397 99 0.2321 0.2732 REMARK 3 7 2.6400 - 2.5100 1.00 2913 112 0.2320 0.2958 REMARK 3 8 2.5100 - 2.4000 1.00 2902 122 0.2355 0.2750 REMARK 3 9 2.4000 - 2.3100 1.00 2887 145 0.2460 0.3025 REMARK 3 10 2.3100 - 2.2300 0.65 1871 91 0.2641 0.2834 REMARK 3 11 2.2300 - 2.1600 1.00 2883 137 0.2818 0.3023 REMARK 3 12 2.1600 - 2.1000 1.00 2870 149 0.3027 0.3471 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.269 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 4285 REMARK 3 ANGLE : 0.577 5865 REMARK 3 CHIRALITY : 0.042 618 REMARK 3 PLANARITY : 0.004 683 REMARK 3 DIHEDRAL : 13.466 1616 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -24.9216 -23.9497 -25.3670 REMARK 3 T TENSOR REMARK 3 T11: 0.3309 T22: 0.3563 REMARK 3 T33: 0.3570 T12: 0.0031 REMARK 3 T13: 0.0077 T23: -0.0245 REMARK 3 L TENSOR REMARK 3 L11: 1.2984 L22: 1.2876 REMARK 3 L33: 0.9607 L12: -0.8243 REMARK 3 L13: -0.4383 L23: 0.0067 REMARK 3 S TENSOR REMARK 3 S11: -0.0456 S12: 0.0086 S13: -0.0732 REMARK 3 S21: -0.0585 S22: 0.0433 S23: 0.0496 REMARK 3 S31: -0.0379 S32: -0.1274 S33: 0.0080 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9ZWY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JAN-26. REMARK 100 THE DEPOSITION ID IS D_1000303765. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-AUG-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.920105 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34747 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 32.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.13 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 1.83400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS WERE GROWN IN 20% PEG 3350, REMARK 280 0.2 M AMMONIUM SULFATE, 0.1 M MES/IMIDAZOLE (PH 6.0), 100 MM MG2+ REMARK 280 , 2 MM ATP, 10% ISOPROPANOL, AND 5% PEG 400, AND WERE SOAKED FOR REMARK 280 16 H IN THE SAME SOLUTION SUPPLEMENTED WITH 5 MM ATP AND 1 MM REMARK 280 CUA., VAPOR DIFFUSION, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 51.72000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.88900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 56.50400 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 51.72000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.88900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 56.50400 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 51.72000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 52.88900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 56.50400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 51.72000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 52.88900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 56.50400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B2126 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 414 REMARK 465 SER A 415 REMARK 465 HIS A 416 REMARK 465 MET A 417 REMARK 465 ALA A 418 REMARK 465 THR A 419 REMARK 465 ASP A 420 REMARK 465 TYR A 421 REMARK 465 LYS A 422 REMARK 465 ASP A 423 REMARK 465 ASP A 424 REMARK 465 ASP A 425 REMARK 465 ASP A 426 REMARK 465 LYS A 427 REMARK 465 SER A 428 REMARK 465 GLN A 429 REMARK 465 VAL A 430 REMARK 465 VAL A 431 REMARK 465 ARG A 432 REMARK 465 GLU A 589 REMARK 465 LYS A 590 REMARK 465 ILE A 591 REMARK 465 GLU A 592 REMARK 465 ARG A 593 REMARK 465 ILE A 594 REMARK 465 GLU A 595 REMARK 465 GLY B 414 REMARK 465 SER B 415 REMARK 465 HIS B 416 REMARK 465 MET B 417 REMARK 465 ALA B 418 REMARK 465 THR B 419 REMARK 465 ASP B 420 REMARK 465 TYR B 421 REMARK 465 LYS B 422 REMARK 465 ASP B 423 REMARK 465 ASP B 424 REMARK 465 ASP B 425 REMARK 465 ASP B 426 REMARK 465 LYS B 427 REMARK 465 SER B 428 REMARK 465 GLN B 429 REMARK 465 VAL B 430 REMARK 465 VAL B 431 REMARK 465 ARG B 432 REMARK 465 LYS B 433 REMARK 465 LYS B 434 REMARK 465 THR B 435 REMARK 465 LYS B 590 REMARK 465 ILE B 591 REMARK 465 GLU B 592 REMARK 465 ARG B 593 REMARK 465 ILE B 594 REMARK 465 GLU B 595 REMARK 465 GLY C 414 REMARK 465 SER C 415 REMARK 465 HIS C 416 REMARK 465 MET C 417 REMARK 465 ALA C 418 REMARK 465 THR C 419 REMARK 465 ASP C 420 REMARK 465 TYR C 421 REMARK 465 LYS C 422 REMARK 465 ASP C 423 REMARK 465 ASP C 424 REMARK 465 ASP C 425 REMARK 465 ASP C 426 REMARK 465 LYS C 427 REMARK 465 SER C 428 REMARK 465 GLN C 429 REMARK 465 VAL C 430 REMARK 465 VAL C 431 REMARK 465 ARG C 432 REMARK 465 GLU C 589 REMARK 465 LYS C 590 REMARK 465 ILE C 591 REMARK 465 GLU C 592 REMARK 465 ARG C 593 REMARK 465 ILE C 594 REMARK 465 GLU C 595 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 434 -75.49 -114.73 REMARK 500 ASP A 514 70.01 -100.82 REMARK 500 TYR B 437 -163.15 -75.15 REMARK 500 ASP B 514 66.57 -102.90 REMARK 500 LYS B 534 73.53 57.68 REMARK 500 ASP B 543 60.05 -102.75 REMARK 500 GLN C 483 67.73 -112.50 REMARK 500 ASP C 543 72.09 -102.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A2001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 454 OG REMARK 620 2 ATP A2002 O2B 91.6 REMARK 620 3 ATP A2002 O2G 178.0 87.7 REMARK 620 4 HOH A2125 O 88.9 91.9 89.3 REMARK 620 5 HOH A2128 O 90.3 88.5 91.6 179.0 REMARK 620 6 HOH A2133 O 88.3 178.6 92.4 89.5 90.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B2001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 454 OG REMARK 620 2 ATP B2002 O2G 178.2 REMARK 620 3 ATP B2002 O2B 90.5 90.7 REMARK 620 4 HOH B2111 O 90.3 88.3 93.3 REMARK 620 5 HOH B2113 O 89.9 91.5 88.4 178.2 REMARK 620 6 HOH B2127 O 88.7 90.3 177.5 89.0 89.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C2001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER C 454 OG REMARK 620 2 ATP C2002 O2G 176.9 REMARK 620 3 ATP C2002 O2B 91.7 91.3 REMARK 620 4 HOH C2111 O 90.0 89.7 88.0 REMARK 620 5 HOH C2119 O 88.9 91.5 89.6 177.3 REMARK 620 6 HOH C2139 O 89.0 88.0 179.3 92.0 90.4 REMARK 620 N 1 2 3 4 5 DBREF 9ZWY A 428 595 UNP Q86UW6 N4BP2_HUMAN 428 595 DBREF 9ZWY B 428 595 UNP Q86UW6 N4BP2_HUMAN 428 595 DBREF 9ZWY C 428 595 UNP Q86UW6 N4BP2_HUMAN 428 595 DBREF 9ZWY D 1 3 PDB 9ZWY 9ZWY 1 3 DBREF 9ZWY E 1 3 PDB 9ZWY 9ZWY 1 3 DBREF 9ZWY F 1 3 PDB 9ZWY 9ZWY 1 3 SEQADV 9ZWY GLY A 414 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWY SER A 415 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWY HIS A 416 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWY MET A 417 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWY ALA A 418 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWY THR A 419 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWY ASP A 420 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWY TYR A 421 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWY LYS A 422 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWY ASP A 423 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWY ASP A 424 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWY ASP A 425 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWY ASP A 426 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWY LYS A 427 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWY GLY B 414 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWY SER B 415 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWY HIS B 416 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWY MET B 417 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWY ALA B 418 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWY THR B 419 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWY ASP B 420 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWY TYR B 421 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWY LYS B 422 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWY ASP B 423 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWY ASP B 424 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWY ASP B 425 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWY ASP B 426 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWY LYS B 427 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWY GLY C 414 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWY SER C 415 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWY HIS C 416 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWY MET C 417 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWY ALA C 418 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWY THR C 419 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWY ASP C 420 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWY TYR C 421 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWY LYS C 422 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWY ASP C 423 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWY ASP C 424 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWY ASP C 425 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWY ASP C 426 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZWY LYS C 427 UNP Q86UW6 EXPRESSION TAG SEQRES 1 A 182 GLY SER HIS MET ALA THR ASP TYR LYS ASP ASP ASP ASP SEQRES 2 A 182 LYS SER GLN VAL VAL ARG LYS LYS THR SER TYR VAL GLY SEQRES 3 A 182 LEU VAL LEU VAL LEU LEU ARG GLY LEU PRO GLY SER GLY SEQRES 4 A 182 LYS SER PHE LEU ALA ARG THR LEU GLN GLU ASP ASN PRO SEQRES 5 A 182 SER GLY VAL ILE LEU SER THR ASP ASP TYR PHE TYR ILE SEQRES 6 A 182 ASN GLY GLN TYR GLN PHE ASP VAL LYS TYR LEU GLY GLU SEQRES 7 A 182 ALA HIS GLU TRP ASN GLN ASN ARG ALA LYS GLU ALA PHE SEQRES 8 A 182 GLU LYS LYS ILE SER PRO ILE ILE ILE ASP ASN THR ASN SEQRES 9 A 182 LEU GLN ALA TRP GLU MET LYS PRO TYR VAL ALA LEU SER SEQRES 10 A 182 GLN LYS HIS LYS TYR LYS VAL LEU PHE ARG GLU PRO ASP SEQRES 11 A 182 THR TRP TRP LYS PHE LYS PRO LYS GLU LEU ALA ARG ARG SEQRES 12 A 182 ASN ILE HIS GLY VAL SER LYS GLU LYS ILE THR ARG MET SEQRES 13 A 182 LEU GLU HIS TYR GLN ARG PHE VAL SER VAL PRO ILE ILE SEQRES 14 A 182 MET SER SER SER VAL PRO GLU LYS ILE GLU ARG ILE GLU SEQRES 1 B 182 GLY SER HIS MET ALA THR ASP TYR LYS ASP ASP ASP ASP SEQRES 2 B 182 LYS SER GLN VAL VAL ARG LYS LYS THR SER TYR VAL GLY SEQRES 3 B 182 LEU VAL LEU VAL LEU LEU ARG GLY LEU PRO GLY SER GLY SEQRES 4 B 182 LYS SER PHE LEU ALA ARG THR LEU GLN GLU ASP ASN PRO SEQRES 5 B 182 SER GLY VAL ILE LEU SER THR ASP ASP TYR PHE TYR ILE SEQRES 6 B 182 ASN GLY GLN TYR GLN PHE ASP VAL LYS TYR LEU GLY GLU SEQRES 7 B 182 ALA HIS GLU TRP ASN GLN ASN ARG ALA LYS GLU ALA PHE SEQRES 8 B 182 GLU LYS LYS ILE SER PRO ILE ILE ILE ASP ASN THR ASN SEQRES 9 B 182 LEU GLN ALA TRP GLU MET LYS PRO TYR VAL ALA LEU SER SEQRES 10 B 182 GLN LYS HIS LYS TYR LYS VAL LEU PHE ARG GLU PRO ASP SEQRES 11 B 182 THR TRP TRP LYS PHE LYS PRO LYS GLU LEU ALA ARG ARG SEQRES 12 B 182 ASN ILE HIS GLY VAL SER LYS GLU LYS ILE THR ARG MET SEQRES 13 B 182 LEU GLU HIS TYR GLN ARG PHE VAL SER VAL PRO ILE ILE SEQRES 14 B 182 MET SER SER SER VAL PRO GLU LYS ILE GLU ARG ILE GLU SEQRES 1 C 182 GLY SER HIS MET ALA THR ASP TYR LYS ASP ASP ASP ASP SEQRES 2 C 182 LYS SER GLN VAL VAL ARG LYS LYS THR SER TYR VAL GLY SEQRES 3 C 182 LEU VAL LEU VAL LEU LEU ARG GLY LEU PRO GLY SER GLY SEQRES 4 C 182 LYS SER PHE LEU ALA ARG THR LEU GLN GLU ASP ASN PRO SEQRES 5 C 182 SER GLY VAL ILE LEU SER THR ASP ASP TYR PHE TYR ILE SEQRES 6 C 182 ASN GLY GLN TYR GLN PHE ASP VAL LYS TYR LEU GLY GLU SEQRES 7 C 182 ALA HIS GLU TRP ASN GLN ASN ARG ALA LYS GLU ALA PHE SEQRES 8 C 182 GLU LYS LYS ILE SER PRO ILE ILE ILE ASP ASN THR ASN SEQRES 9 C 182 LEU GLN ALA TRP GLU MET LYS PRO TYR VAL ALA LEU SER SEQRES 10 C 182 GLN LYS HIS LYS TYR LYS VAL LEU PHE ARG GLU PRO ASP SEQRES 11 C 182 THR TRP TRP LYS PHE LYS PRO LYS GLU LEU ALA ARG ARG SEQRES 12 C 182 ASN ILE HIS GLY VAL SER LYS GLU LYS ILE THR ARG MET SEQRES 13 C 182 LEU GLU HIS TYR GLN ARG PHE VAL SER VAL PRO ILE ILE SEQRES 14 C 182 MET SER SER SER VAL PRO GLU LYS ILE GLU ARG ILE GLU SEQRES 1 D 3 C U A SEQRES 1 E 3 C U A SEQRES 1 F 3 C U A HET MG A2001 1 HET ATP A2002 38 HET SO4 A2003 5 HET MG B2001 1 HET ATP B2002 38 HET SO4 B2003 5 HET MG C2001 1 HET ATP C2002 38 HET SO4 C2003 5 HET SO4 C2004 5 HET EDO C2005 10 HET SO4 E 101 5 HETNAM MG MAGNESIUM ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 7 MG 3(MG 2+) FORMUL 8 ATP 3(C10 H16 N5 O13 P3) FORMUL 9 SO4 5(O4 S 2-) FORMUL 17 EDO C2 H6 O2 FORMUL 19 HOH *191(H2 O) HELIX 1 AA1 GLY A 452 ASN A 464 1 13 HELIX 2 AA2 SER A 471 TYR A 475 5 5 HELIX 3 AA3 ASP A 485 LYS A 487 5 3 HELIX 4 AA4 TYR A 488 LYS A 506 1 19 HELIX 5 AA5 GLN A 519 GLU A 522 5 4 HELIX 6 AA6 MET A 523 HIS A 533 1 11 HELIX 7 AA7 LYS A 549 ASN A 557 1 9 HELIX 8 AA8 SER A 562 HIS A 572 1 11 HELIX 9 AA9 SER A 578 SER A 585 1 8 HELIX 10 AB1 GLY B 452 ASN B 464 1 13 HELIX 11 AB2 SER B 471 TYR B 475 5 5 HELIX 12 AB3 ASP B 485 LYS B 487 5 3 HELIX 13 AB4 TYR B 488 LYS B 506 1 19 HELIX 14 AB5 GLN B 519 GLU B 522 5 4 HELIX 15 AB6 MET B 523 LYS B 534 1 12 HELIX 16 AB7 LYS B 549 ASN B 557 1 9 HELIX 17 AB8 SER B 562 HIS B 572 1 11 HELIX 18 AB9 SER B 578 SER B 585 1 8 HELIX 19 AC1 GLY C 452 ASN C 464 1 13 HELIX 20 AC2 SER C 471 TYR C 475 5 5 HELIX 21 AC3 ASP C 485 LYS C 487 5 3 HELIX 22 AC4 TYR C 488 LYS C 506 1 19 HELIX 23 AC5 GLN C 519 GLU C 522 5 4 HELIX 24 AC6 MET C 523 HIS C 533 1 11 HELIX 25 AC7 LYS C 549 ASN C 557 1 9 HELIX 26 AC8 SER C 562 HIS C 572 1 11 HELIX 27 AC9 SER C 578 SER C 584 1 7 SHEET 1 AA1 4 VAL A 468 LEU A 470 0 SHEET 2 AA1 4 ILE A 511 ILE A 513 1 O ILE A 512 N LEU A 470 SHEET 3 AA1 4 VAL A 441 LEU A 445 1 N VAL A 443 O ILE A 513 SHEET 4 AA1 4 LYS A 536 ARG A 540 1 O LYS A 536 N LEU A 442 SHEET 1 AA2 2 TYR A 477 ILE A 478 0 SHEET 2 AA2 2 GLN A 481 TYR A 482 -1 O GLN A 481 N ILE A 478 SHEET 1 AA3 4 VAL B 468 LEU B 470 0 SHEET 2 AA3 4 ILE B 511 ILE B 513 1 O ILE B 512 N LEU B 470 SHEET 3 AA3 4 VAL B 441 LEU B 445 1 N VAL B 443 O ILE B 513 SHEET 4 AA3 4 LYS B 536 ARG B 540 1 O LYS B 536 N LEU B 442 SHEET 1 AA4 2 TYR B 477 ILE B 478 0 SHEET 2 AA4 2 GLN B 481 TYR B 482 -1 O GLN B 481 N ILE B 478 SHEET 1 AA5 4 VAL C 468 LEU C 470 0 SHEET 2 AA5 4 ILE C 511 ILE C 513 1 O ILE C 512 N LEU C 470 SHEET 3 AA5 4 VAL C 441 LEU C 445 1 N VAL C 443 O ILE C 513 SHEET 4 AA5 4 LYS C 536 ARG C 540 1 O LYS C 536 N LEU C 442 SHEET 1 AA6 2 TYR C 477 ILE C 478 0 SHEET 2 AA6 2 GLN C 481 TYR C 482 -1 O GLN C 481 N ILE C 478 LINK OG SER A 454 MG MG A2001 1555 1555 2.01 LINK MG MG A2001 O2B ATP A2002 1555 1555 2.10 LINK MG MG A2001 O2G ATP A2002 1555 1555 2.08 LINK MG MG A2001 O HOH A2125 1555 1555 2.15 LINK MG MG A2001 O HOH A2128 1555 1555 2.04 LINK MG MG A2001 O HOH A2133 1555 1555 2.12 LINK OG SER B 454 MG MG B2001 1555 1555 2.04 LINK MG MG B2001 O2G ATP B2002 1555 1555 2.01 LINK MG MG B2001 O2B ATP B2002 1555 1555 2.08 LINK MG MG B2001 O HOH B2111 1555 1555 2.05 LINK MG MG B2001 O HOH B2113 1555 1555 2.10 LINK MG MG B2001 O HOH B2127 1555 1555 2.22 LINK OG SER C 454 MG MG C2001 1555 1555 2.09 LINK MG MG C2001 O2G ATP C2002 1555 1555 2.00 LINK MG MG C2001 O2B ATP C2002 1555 1555 2.02 LINK MG MG C2001 O HOH C2111 1555 1555 2.11 LINK MG MG C2001 O HOH C2119 1555 1555 2.21 LINK MG MG C2001 O HOH C2139 1555 1555 2.14 CISPEP 1 SER A 509 PRO A 510 0 -2.22 CISPEP 2 SER B 509 PRO B 510 0 -3.60 CISPEP 3 SER C 509 PRO C 510 0 -3.65 CRYST1 103.440 105.778 113.008 90.00 90.00 90.00 I 2 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009667 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009454 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008849 0.00000 CONECT 337 8013 CONECT 2870 8057 CONECT 5476 8101 CONECT 8013 337 8016 8020 8189 CONECT 8013 8192 8197 CONECT 8014 8015 8016 8017 8021 CONECT 8015 8014 CONECT 8016 8013 8014 CONECT 8017 8014 CONECT 8018 8019 8020 8021 8025 CONECT 8019 8018 CONECT 8020 8013 8018 CONECT 8021 8014 8018 CONECT 8022 8023 8024 8025 8026 CONECT 8023 8022 CONECT 8024 8022 CONECT 8025 8018 8022 CONECT 8026 8022 8027 CONECT 8027 8026 8028 8045 8046 CONECT 8028 8027 8029 8030 8047 CONECT 8029 8028 8034 CONECT 8030 8028 8031 8032 8048 CONECT 8031 8030 CONECT 8032 8030 8033 8034 8049 CONECT 8033 8032 8050 CONECT 8034 8029 8032 8035 8051 CONECT 8035 8034 8036 8044 CONECT 8036 8035 8037 CONECT 8037 8036 8038 CONECT 8038 8037 8039 8044 CONECT 8039 8038 8040 8041 CONECT 8040 8039 CONECT 8041 8039 8042 CONECT 8042 8041 8043 CONECT 8043 8042 8044 CONECT 8044 8035 8038 8043 CONECT 8045 8027 CONECT 8046 8027 CONECT 8047 8028 CONECT 8048 8030 CONECT 8049 8032 CONECT 8050 8033 CONECT 8051 8034 CONECT 8052 8053 8054 8055 8056 CONECT 8053 8052 CONECT 8054 8052 CONECT 8055 8052 CONECT 8056 8052 CONECT 8057 2870 8060 8064 8236 CONECT 8057 8238 8252 CONECT 8058 8059 8060 8061 8065 CONECT 8059 8058 CONECT 8060 8057 8058 CONECT 8061 8058 CONECT 8062 8063 8064 8065 8069 CONECT 8063 8062 CONECT 8064 8057 8062 CONECT 8065 8058 8062 CONECT 8066 8067 8068 8069 8070 CONECT 8067 8066 CONECT 8068 8066 CONECT 8069 8062 8066 CONECT 8070 8066 8071 CONECT 8071 8070 8072 8089 8090 CONECT 8072 8071 8073 8074 8091 CONECT 8073 8072 8078 CONECT 8074 8072 8075 8076 8092 CONECT 8075 8074 CONECT 8076 8074 8077 8078 8093 CONECT 8077 8076 8094 CONECT 8078 8073 8076 8079 8095 CONECT 8079 8078 8080 8088 CONECT 8080 8079 8081 CONECT 8081 8080 8082 CONECT 8082 8081 8083 8088 CONECT 8083 8082 8084 8085 CONECT 8084 8083 CONECT 8085 8083 8086 CONECT 8086 8085 8087 CONECT 8087 8086 8088 CONECT 8088 8079 8082 8087 CONECT 8089 8071 CONECT 8090 8071 CONECT 8091 8072 CONECT 8092 8074 CONECT 8093 8076 CONECT 8094 8077 CONECT 8095 8078 CONECT 8096 8097 8098 8099 8100 CONECT 8097 8096 CONECT 8098 8096 CONECT 8099 8096 CONECT 8100 8096 CONECT 8101 5476 8104 8108 8282 CONECT 8101 8290 8310 CONECT 8102 8103 8104 8105 8109 CONECT 8103 8102 CONECT 8104 8101 8102 CONECT 8105 8102 CONECT 8106 8107 8108 8109 8113 CONECT 8107 8106 CONECT 8108 8101 8106 CONECT 8109 8102 8106 CONECT 8110 8111 8112 8113 8114 CONECT 8111 8110 CONECT 8112 8110 CONECT 8113 8106 8110 CONECT 8114 8110 8115 CONECT 8115 8114 8116 8133 8134 CONECT 8116 8115 8117 8118 8135 CONECT 8117 8116 8122 CONECT 8118 8116 8119 8120 8136 CONECT 8119 8118 CONECT 8120 8118 8121 8122 8137 CONECT 8121 8120 8138 CONECT 8122 8117 8120 8123 8139 CONECT 8123 8122 8124 8132 CONECT 8124 8123 8125 CONECT 8125 8124 8126 CONECT 8126 8125 8127 8132 CONECT 8127 8126 8128 8129 CONECT 8128 8127 CONECT 8129 8127 8130 CONECT 8130 8129 8131 CONECT 8131 8130 8132 CONECT 8132 8123 8126 8131 CONECT 8133 8115 CONECT 8134 8115 CONECT 8135 8116 CONECT 8136 8118 CONECT 8137 8120 CONECT 8138 8121 CONECT 8139 8122 CONECT 8140 8141 8142 8143 8144 CONECT 8141 8140 CONECT 8142 8140 CONECT 8143 8140 CONECT 8144 8140 CONECT 8145 8146 8147 8148 8149 CONECT 8146 8145 CONECT 8147 8145 CONECT 8148 8145 CONECT 8149 8145 CONECT 8150 8151 8152 8154 8155 CONECT 8151 8150 8156 CONECT 8152 8150 8153 8157 8158 CONECT 8153 8152 8159 CONECT 8154 8150 CONECT 8155 8150 CONECT 8156 8151 CONECT 8157 8152 CONECT 8158 8152 CONECT 8159 8153 CONECT 8160 8161 8162 8163 8164 CONECT 8161 8160 CONECT 8162 8160 CONECT 8163 8160 CONECT 8164 8160 CONECT 8189 8013 CONECT 8192 8013 CONECT 8197 8013 CONECT 8236 8057 CONECT 8238 8057 CONECT 8252 8057 CONECT 8282 8101 CONECT 8290 8101 CONECT 8310 8101 MASTER 418 0 12 27 18 0 0 6 4341 6 167 45 END