HEADER TRANSFERASE 03-JAN-26 9ZX2 TITLE CRYSTAL STRUCTURE OF THE N4BP2 POLYNUCLEOTIDE KINASE DOMAIN COMPLEXED TITLE 2 WITH ADP, MG, AND 5'-PHOSPHORYLATED GUA (PGUA). COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEDD4-BINDING PROTEIN 2; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: N4BP2,BCL-3-BINDING PROTEIN; COMPND 5 EC: 3.-.-.-; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: NEDD4-BINDING PROTEIN 2; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: 5'-PHOSPHORYLATED RNA (5'-R(PGPUPA)-3'); COMPND 10 CHAIN: D, E, F; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: N4BP2, B3BP, KIAA1413; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS TRANSFERASE; POLYNUCLEOTIDE KINASE; CATALYSIS; ENZYME REACTION; KEYWDS 2 CATALYTIC MECHANISM; PHOSPHORYL TRANSFER, RNA, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.WANG,R.E.STANLEY REVDAT 1 23-SEP-26 9ZX2 0 JRNL AUTH H.WANG,R.E.STANLEY JRNL TITL STRUCTURE, SPECIFICITY, AND CATALYTIC MECHANISM OF THE JRNL TITL 2 POLYNUCLEOTIDE KINASE DOMAINS FROM THE HUMAN N4BP2 KINASE JRNL TITL 3 FAMILY JRNL REF NAT COMMUN 2026 JRNL REFN ESSN 2041-1723 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 2.0_5936 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 16065 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 819 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.0700 - 4.9900 0.98 2738 135 0.2037 0.2348 REMARK 3 2 4.9900 - 3.9700 0.96 2554 170 0.1769 0.2499 REMARK 3 3 3.9600 - 3.4600 0.91 2437 91 0.2372 0.2980 REMARK 3 4 3.4600 - 3.1500 0.90 2352 157 0.3031 0.3574 REMARK 3 5 3.1500 - 2.9200 0.97 2550 139 0.2887 0.3858 REMARK 3 6 2.9200 - 2.7500 1.00 2615 127 0.2729 0.3386 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.994 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4309 REMARK 3 ANGLE : 0.615 5914 REMARK 3 CHIRALITY : 0.040 626 REMARK 3 PLANARITY : 0.003 690 REMARK 3 DIHEDRAL : 14.349 1671 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -24.9761 -24.3895 -25.9720 REMARK 3 T TENSOR REMARK 3 T11: 0.2215 T22: 0.2677 REMARK 3 T33: 0.3481 T12: -0.0181 REMARK 3 T13: 0.0002 T23: -0.0429 REMARK 3 L TENSOR REMARK 3 L11: 2.2074 L22: 1.3122 REMARK 3 L33: 1.4548 L12: -0.9299 REMARK 3 L13: -0.9442 L23: 0.1921 REMARK 3 S TENSOR REMARK 3 S11: -0.1196 S12: -0.0684 S13: -0.1447 REMARK 3 S21: -0.0354 S22: 0.0589 S23: 0.0347 REMARK 3 S31: 0.0135 S32: -0.0752 S33: 0.0559 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9ZX2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JAN-26. REMARK 100 THE DEPOSITION ID IS D_1000303775. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-SEP-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.920119 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16843 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 34.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.600 REMARK 200 R MERGE (I) : 0.20000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.70 REMARK 200 R MERGE FOR SHELL (I) : 0.85700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS WERE GROWN IN 20% PEG 3350, REMARK 280 0.2 M AMMONIUM SULFATE, 0.1 M MES/IMIDAZOLE (PH 6.0), 100 MM MG2+ REMARK 280 , 2 MM ATP, 10% ISOPROPANOL, AND 5% PEG 400, AND WERE SOAKED FOR REMARK 280 16 H IN THE SAME SOLUTION SUPPLEMENTED WITH 5 MM ATP AND 1 MM REMARK 280 GUA., VAPOR DIFFUSION, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 51.71800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.54400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 57.18550 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 51.71800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.54400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 57.18550 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 51.71800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 53.54400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 57.18550 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 51.71800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 53.54400 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 57.18550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 414 REMARK 465 SER A 415 REMARK 465 HIS A 416 REMARK 465 MET A 417 REMARK 465 ALA A 418 REMARK 465 THR A 419 REMARK 465 ASP A 420 REMARK 465 TYR A 421 REMARK 465 LYS A 422 REMARK 465 ASP A 423 REMARK 465 ASP A 424 REMARK 465 ASP A 425 REMARK 465 ASP A 426 REMARK 465 LYS A 427 REMARK 465 SER A 428 REMARK 465 GLN A 429 REMARK 465 VAL A 430 REMARK 465 VAL A 431 REMARK 465 ARG A 432 REMARK 465 LYS A 433 REMARK 465 LYS A 434 REMARK 465 THR A 435 REMARK 465 GLU A 589 REMARK 465 LYS A 590 REMARK 465 ILE A 591 REMARK 465 GLU A 592 REMARK 465 ARG A 593 REMARK 465 ILE A 594 REMARK 465 GLU A 595 REMARK 465 GLY B 414 REMARK 465 SER B 415 REMARK 465 HIS B 416 REMARK 465 MET B 417 REMARK 465 ALA B 418 REMARK 465 THR B 419 REMARK 465 ASP B 420 REMARK 465 TYR B 421 REMARK 465 LYS B 422 REMARK 465 ASP B 423 REMARK 465 ASP B 424 REMARK 465 ASP B 425 REMARK 465 ASP B 426 REMARK 465 LYS B 427 REMARK 465 SER B 428 REMARK 465 GLN B 429 REMARK 465 VAL B 430 REMARK 465 VAL B 431 REMARK 465 ARG B 432 REMARK 465 LYS B 433 REMARK 465 LYS B 434 REMARK 465 THR B 435 REMARK 465 GLU B 589 REMARK 465 LYS B 590 REMARK 465 ILE B 591 REMARK 465 GLU B 592 REMARK 465 ARG B 593 REMARK 465 ILE B 594 REMARK 465 GLU B 595 REMARK 465 GLY C 414 REMARK 465 SER C 415 REMARK 465 HIS C 416 REMARK 465 MET C 417 REMARK 465 ALA C 418 REMARK 465 THR C 419 REMARK 465 ASP C 420 REMARK 465 TYR C 421 REMARK 465 LYS C 422 REMARK 465 ASP C 423 REMARK 465 ASP C 424 REMARK 465 ASP C 425 REMARK 465 ASP C 426 REMARK 465 LYS C 427 REMARK 465 SER C 428 REMARK 465 GLN C 429 REMARK 465 VAL C 430 REMARK 465 VAL C 431 REMARK 465 ARG C 432 REMARK 465 LYS C 433 REMARK 465 GLU C 589 REMARK 465 LYS C 590 REMARK 465 ILE C 591 REMARK 465 GLU C 592 REMARK 465 ARG C 593 REMARK 465 ILE C 594 REMARK 465 GLU C 595 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 G D 1 P G D 1 OP3 -0.126 REMARK 500 G E 1 P G E 1 OP3 -0.128 REMARK 500 G E 1 P G E 1 OP3 -0.129 REMARK 500 G F 1 P G F 1 OP3 -0.126 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 476 44.72 -100.32 REMARK 500 ASN A 479 -90.56 58.11 REMARK 500 LYS A 534 77.41 56.14 REMARK 500 LYS B 534 74.59 56.76 REMARK 500 ASP B 543 59.99 -97.57 REMARK 500 HIS B 559 -160.28 -113.70 REMARK 500 HIS B 559 -163.28 -119.26 REMARK 500 ASP C 543 56.01 -101.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A2001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 454 OG REMARK 620 2 ADP A2002 O2B 90.4 REMARK 620 3 HOH A2125 O 88.3 91.4 REMARK 620 4 HOH A2142 O 87.7 176.1 92.0 REMARK 620 5 G D 1 OP2 176.0 92.4 88.8 89.8 REMARK 620 6 HOH D 104 O 91.1 86.2 177.5 90.4 91.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B2001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 454 OG REMARK 620 2 ADP B2002 O2B 90.7 REMARK 620 3 HOH B2103 O 90.9 90.5 REMARK 620 4 HOH B2126 O 88.5 88.9 179.2 REMARK 620 5 G E 1 OP2 173.3 95.7 90.9 89.8 REMARK 620 6 HOH E1001 O 90.7 178.2 90.5 90.1 82.8 REMARK 620 7 HOH E1002 O 177.5 87.7 91.0 89.6 8.0 90.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C2001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER C 454 OG REMARK 620 2 ADP C2002 O2B 91.3 REMARK 620 3 HOH C2126 O 88.8 90.7 REMARK 620 4 HOH C2127 O 90.7 88.0 178.6 REMARK 620 5 HOH C2132 O 88.5 178.0 91.2 90.0 REMARK 620 6 G F 1 OP2 177.5 90.6 89.6 91.0 89.7 REMARK 620 N 1 2 3 4 5 DBREF 9ZX2 A 428 595 UNP Q86UW6 N4BP2_HUMAN 428 595 DBREF 9ZX2 B 428 595 UNP Q86UW6 N4BP2_HUMAN 428 595 DBREF 9ZX2 C 428 595 UNP Q86UW6 N4BP2_HUMAN 428 595 DBREF 9ZX2 D 1 3 PDB 9ZX2 9ZX2 1 3 DBREF 9ZX2 E 1 3 PDB 9ZX2 9ZX2 1 3 DBREF 9ZX2 F 1 3 PDB 9ZX2 9ZX2 1 3 SEQADV 9ZX2 GLY A 414 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX2 SER A 415 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX2 HIS A 416 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX2 MET A 417 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX2 ALA A 418 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX2 THR A 419 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX2 ASP A 420 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX2 TYR A 421 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX2 LYS A 422 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX2 ASP A 423 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX2 ASP A 424 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX2 ASP A 425 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX2 ASP A 426 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX2 LYS A 427 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX2 GLY B 414 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX2 SER B 415 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX2 HIS B 416 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX2 MET B 417 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX2 ALA B 418 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX2 THR B 419 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX2 ASP B 420 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX2 TYR B 421 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX2 LYS B 422 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX2 ASP B 423 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX2 ASP B 424 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX2 ASP B 425 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX2 ASP B 426 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX2 LYS B 427 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX2 GLY C 414 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX2 SER C 415 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX2 HIS C 416 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX2 MET C 417 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX2 ALA C 418 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX2 THR C 419 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX2 ASP C 420 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX2 TYR C 421 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX2 LYS C 422 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX2 ASP C 423 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX2 ASP C 424 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX2 ASP C 425 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX2 ASP C 426 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX2 LYS C 427 UNP Q86UW6 EXPRESSION TAG SEQRES 1 A 182 GLY SER HIS MET ALA THR ASP TYR LYS ASP ASP ASP ASP SEQRES 2 A 182 LYS SER GLN VAL VAL ARG LYS LYS THR SER TYR VAL GLY SEQRES 3 A 182 LEU VAL LEU VAL LEU LEU ARG GLY LEU PRO GLY SER GLY SEQRES 4 A 182 LYS SER PHE LEU ALA ARG THR LEU GLN GLU ASP ASN PRO SEQRES 5 A 182 SER GLY VAL ILE LEU SER THR ASP ASP TYR PHE TYR ILE SEQRES 6 A 182 ASN GLY GLN TYR GLN PHE ASP VAL LYS TYR LEU GLY GLU SEQRES 7 A 182 ALA HIS GLU TRP ASN GLN ASN ARG ALA LYS GLU ALA PHE SEQRES 8 A 182 GLU LYS LYS ILE SER PRO ILE ILE ILE ASP ASN THR ASN SEQRES 9 A 182 LEU GLN ALA TRP GLU MET LYS PRO TYR VAL ALA LEU SER SEQRES 10 A 182 GLN LYS HIS LYS TYR LYS VAL LEU PHE ARG GLU PRO ASP SEQRES 11 A 182 THR TRP TRP LYS PHE LYS PRO LYS GLU LEU ALA ARG ARG SEQRES 12 A 182 ASN ILE HIS GLY VAL SER LYS GLU LYS ILE THR ARG MET SEQRES 13 A 182 LEU GLU HIS TYR GLN ARG PHE VAL SER VAL PRO ILE ILE SEQRES 14 A 182 MET SER SER SER VAL PRO GLU LYS ILE GLU ARG ILE GLU SEQRES 1 B 182 GLY SER HIS MET ALA THR ASP TYR LYS ASP ASP ASP ASP SEQRES 2 B 182 LYS SER GLN VAL VAL ARG LYS LYS THR SER TYR VAL GLY SEQRES 3 B 182 LEU VAL LEU VAL LEU LEU ARG GLY LEU PRO GLY SER GLY SEQRES 4 B 182 LYS SER PHE LEU ALA ARG THR LEU GLN GLU ASP ASN PRO SEQRES 5 B 182 SER GLY VAL ILE LEU SER THR ASP ASP TYR PHE TYR ILE SEQRES 6 B 182 ASN GLY GLN TYR GLN PHE ASP VAL LYS TYR LEU GLY GLU SEQRES 7 B 182 ALA HIS GLU TRP ASN GLN ASN ARG ALA LYS GLU ALA PHE SEQRES 8 B 182 GLU LYS LYS ILE SER PRO ILE ILE ILE ASP ASN THR ASN SEQRES 9 B 182 LEU GLN ALA TRP GLU MET LYS PRO TYR VAL ALA LEU SER SEQRES 10 B 182 GLN LYS HIS LYS TYR LYS VAL LEU PHE ARG GLU PRO ASP SEQRES 11 B 182 THR TRP TRP LYS PHE LYS PRO LYS GLU LEU ALA ARG ARG SEQRES 12 B 182 ASN ILE HIS GLY VAL SER LYS GLU LYS ILE THR ARG MET SEQRES 13 B 182 LEU GLU HIS TYR GLN ARG PHE VAL SER VAL PRO ILE ILE SEQRES 14 B 182 MET SER SER SER VAL PRO GLU LYS ILE GLU ARG ILE GLU SEQRES 1 C 182 GLY SER HIS MET ALA THR ASP TYR LYS ASP ASP ASP ASP SEQRES 2 C 182 LYS SER GLN VAL VAL ARG LYS LYS THR SER TYR VAL GLY SEQRES 3 C 182 LEU VAL LEU VAL LEU LEU ARG GLY LEU PRO GLY SER GLY SEQRES 4 C 182 LYS SER PHE LEU ALA ARG THR LEU GLN GLU ASP ASN PRO SEQRES 5 C 182 SER GLY VAL ILE LEU SER THR ASP ASP TYR PHE TYR ILE SEQRES 6 C 182 ASN GLY GLN TYR GLN PHE ASP VAL LYS TYR LEU GLY GLU SEQRES 7 C 182 ALA HIS GLU TRP ASN GLN ASN ARG ALA LYS GLU ALA PHE SEQRES 8 C 182 GLU LYS LYS ILE SER PRO ILE ILE ILE ASP ASN THR ASN SEQRES 9 C 182 LEU GLN ALA TRP GLU MET LYS PRO TYR VAL ALA LEU SER SEQRES 10 C 182 GLN LYS HIS LYS TYR LYS VAL LEU PHE ARG GLU PRO ASP SEQRES 11 C 182 THR TRP TRP LYS PHE LYS PRO LYS GLU LEU ALA ARG ARG SEQRES 12 C 182 ASN ILE HIS GLY VAL SER LYS GLU LYS ILE THR ARG MET SEQRES 13 C 182 LEU GLU HIS TYR GLN ARG PHE VAL SER VAL PRO ILE ILE SEQRES 14 C 182 MET SER SER SER VAL PRO GLU LYS ILE GLU ARG ILE GLU SEQRES 1 D 3 G U A SEQRES 1 E 3 G U A SEQRES 1 F 3 G U A HET MG A2001 1 HET ADP A2002 39 HET SO4 A2003 5 HET MG B2001 1 HET ADP B2002 39 HET SO4 B2003 5 HET MG C2001 1 HET ADP C2002 39 HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM SO4 SULFATE ION FORMUL 7 MG 3(MG 2+) FORMUL 8 ADP 3(C10 H15 N5 O10 P2) FORMUL 9 SO4 2(O4 S 2-) FORMUL 15 HOH *297(H2 O) HELIX 1 AA1 GLY A 452 ASN A 464 1 13 HELIX 2 AA2 SER A 471 TYR A 475 5 5 HELIX 3 AA3 TYR A 488 LYS A 506 1 19 HELIX 4 AA4 GLN A 519 GLU A 522 5 4 HELIX 5 AA5 MET A 523 HIS A 533 1 11 HELIX 6 AA6 LYS A 549 ASN A 557 1 9 HELIX 7 AA7 SER A 562 HIS A 572 1 11 HELIX 8 AA8 SER A 578 SER A 585 1 8 HELIX 9 AA9 GLY B 452 ASN B 464 1 13 HELIX 10 AB1 SER B 471 TYR B 475 5 5 HELIX 11 AB2 ASP B 485 LYS B 487 5 3 HELIX 12 AB3 TYR B 488 LYS B 506 1 19 HELIX 13 AB4 GLN B 519 GLU B 522 5 4 HELIX 14 AB5 MET B 523 HIS B 533 1 11 HELIX 15 AB6 LYS B 549 ASN B 557 1 9 HELIX 16 AB7 SER B 562 HIS B 572 1 11 HELIX 17 AB8 SER B 578 SER B 585 1 8 HELIX 18 AB9 GLY C 452 ASN C 464 1 13 HELIX 19 AC1 SER C 471 TYR C 475 5 5 HELIX 20 AC2 ASP C 485 LYS C 487 5 3 HELIX 21 AC3 TYR C 488 LYS C 506 1 19 HELIX 22 AC4 GLN C 519 GLU C 522 5 4 HELIX 23 AC5 MET C 523 HIS C 533 1 11 HELIX 24 AC6 LYS C 549 ASN C 557 1 9 HELIX 25 AC7 SER C 562 HIS C 572 1 11 HELIX 26 AC8 SER C 578 SER C 585 1 8 SHEET 1 AA1 4 VAL A 468 LEU A 470 0 SHEET 2 AA1 4 ILE A 511 ILE A 513 1 O ILE A 512 N LEU A 470 SHEET 3 AA1 4 VAL A 441 LEU A 445 1 N VAL A 443 O ILE A 513 SHEET 4 AA1 4 LYS A 536 ARG A 540 1 O LYS A 536 N LEU A 442 SHEET 1 AA2 2 TYR A 477 ILE A 478 0 SHEET 2 AA2 2 GLN A 481 TYR A 482 -1 O GLN A 481 N ILE A 478 SHEET 1 AA3 4 VAL B 468 LEU B 470 0 SHEET 2 AA3 4 ILE B 511 ILE B 513 1 O ILE B 512 N LEU B 470 SHEET 3 AA3 4 VAL B 441 LEU B 445 1 N VAL B 443 O ILE B 513 SHEET 4 AA3 4 LYS B 536 ARG B 540 1 O LEU B 538 N LEU B 444 SHEET 1 AA4 2 TYR B 477 ILE B 478 0 SHEET 2 AA4 2 GLN B 481 TYR B 482 -1 N GLN B 481 O ILE B 478 SHEET 1 AA5 4 VAL C 468 LEU C 470 0 SHEET 2 AA5 4 ILE C 511 ILE C 513 1 O ILE C 512 N LEU C 470 SHEET 3 AA5 4 VAL C 441 LEU C 445 1 N VAL C 443 O ILE C 513 SHEET 4 AA5 4 LYS C 536 ARG C 540 1 O LEU C 538 N LEU C 442 SHEET 1 AA6 2 TYR C 477 ILE C 478 0 SHEET 2 AA6 2 GLN C 481 TYR C 482 -1 O GLN C 481 N ILE C 478 LINK OG SER A 454 MG MG A2001 1555 1555 2.00 LINK MG MG A2001 O2B ADP A2002 1555 1555 2.17 LINK MG MG A2001 O HOH A2125 1555 1555 2.07 LINK MG MG A2001 O HOH A2142 1555 1555 2.17 LINK MG MG A2001 OP2 G D 1 1555 1555 1.95 LINK MG MG A2001 O HOH D 104 1555 1555 2.07 LINK OG SER B 454 MG MG B2001 1555 1555 2.06 LINK MG MG B2001 O2B ADP B2002 1555 1555 2.05 LINK MG MG B2001 O HOH B2103 1555 1555 2.10 LINK MG MG B2001 O HOH B2126 1555 1555 2.05 LINK MG MG B2001 OP2A G E 1 1555 1555 2.41 LINK MG MG B2001 O HOH E1001 1555 1555 2.08 LINK MG MG B2001 O BHOH E1002 1555 1555 2.08 LINK OG SER C 454 MG MG C2001 1555 1555 2.04 LINK MG MG C2001 O2B ADP C2002 1555 1555 2.15 LINK MG MG C2001 O HOH C2126 1555 1555 2.11 LINK MG MG C2001 O HOH C2127 1555 1555 2.11 LINK MG MG C2001 O HOH C2132 1555 1555 2.10 LINK MG MG C2001 OP2 G F 1 1555 1555 2.05 CISPEP 1 SER A 509 PRO A 510 0 -2.87 CISPEP 2 SER B 509 PRO B 510 0 -3.69 CISPEP 3 SER C 509 PRO C 510 0 -4.17 CRYST1 103.436 107.088 114.371 90.00 90.00 90.00 I 2 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009668 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009338 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008743 0.00000 CONECT 279 8040 CONECT 2837 8085 CONECT 5462 8130 CONECT 7720 8040 CONECT 7823 8085 CONECT 7943 8130 CONECT 8040 279 7720 8043 8194 CONECT 8040 8211 8445 CONECT 8041 8042 8043 8044 8048 CONECT 8042 8041 CONECT 8043 8040 8041 CONECT 8044 8041 CONECT 8045 8046 8047 8048 8049 CONECT 8046 8045 CONECT 8047 8045 CONECT 8048 8041 8045 CONECT 8049 8045 8050 CONECT 8050 8049 8051 8068 8069 CONECT 8051 8050 8052 8053 8070 CONECT 8052 8051 8057 CONECT 8053 8051 8054 8055 8071 CONECT 8054 8053 8072 CONECT 8055 8053 8056 8057 8073 CONECT 8056 8055 8074 CONECT 8057 8052 8055 8058 8075 CONECT 8058 8057 8059 8067 CONECT 8059 8058 8060 8076 CONECT 8060 8059 8061 CONECT 8061 8060 8062 8067 CONECT 8062 8061 8063 8064 CONECT 8063 8062 8077 8078 CONECT 8064 8062 8065 CONECT 8065 8064 8066 8079 CONECT 8066 8065 8067 CONECT 8067 8058 8061 8066 CONECT 8068 8050 CONECT 8069 8050 CONECT 8070 8051 CONECT 8071 8053 CONECT 8072 8054 CONECT 8073 8055 CONECT 8074 8056 CONECT 8075 8057 CONECT 8076 8059 CONECT 8077 8063 CONECT 8078 8063 CONECT 8079 8065 CONECT 8080 8081 8082 8083 8084 CONECT 8081 8080 CONECT 8082 8080 CONECT 8083 8080 CONECT 8084 8080 CONECT 8085 2837 7823 8088 8267 CONECT 8085 8290 8454 8455 CONECT 8086 8087 8088 8089 8093 CONECT 8087 8086 CONECT 8088 8085 8086 CONECT 8089 8086 CONECT 8090 8091 8092 8093 8094 CONECT 8091 8090 CONECT 8092 8090 CONECT 8093 8086 8090 CONECT 8094 8090 8095 CONECT 8095 8094 8096 8113 8114 CONECT 8096 8095 8097 8098 8115 CONECT 8097 8096 8102 CONECT 8098 8096 8099 8100 8116 CONECT 8099 8098 8117 CONECT 8100 8098 8101 8102 8118 CONECT 8101 8100 8119 CONECT 8102 8097 8100 8103 8120 CONECT 8103 8102 8104 8112 CONECT 8104 8103 8105 8121 CONECT 8105 8104 8106 CONECT 8106 8105 8107 8112 CONECT 8107 8106 8108 8109 CONECT 8108 8107 8122 8123 CONECT 8109 8107 8110 CONECT 8110 8109 8111 8124 CONECT 8111 8110 8112 CONECT 8112 8103 8106 8111 CONECT 8113 8095 CONECT 8114 8095 CONECT 8115 8096 CONECT 8116 8098 CONECT 8117 8099 CONECT 8118 8100 CONECT 8119 8101 CONECT 8120 8102 CONECT 8121 8104 CONECT 8122 8108 CONECT 8123 8108 CONECT 8124 8110 CONECT 8125 8126 8127 8128 8129 CONECT 8126 8125 CONECT 8127 8125 CONECT 8128 8125 CONECT 8129 8125 CONECT 8130 5462 7943 8133 8365 CONECT 8130 8366 8371 CONECT 8131 8132 8133 8134 8138 CONECT 8132 8131 CONECT 8133 8130 8131 CONECT 8134 8131 CONECT 8135 8136 8137 8138 8139 CONECT 8136 8135 CONECT 8137 8135 CONECT 8138 8131 8135 CONECT 8139 8135 8140 CONECT 8140 8139 8141 8158 8159 CONECT 8141 8140 8142 8143 8160 CONECT 8142 8141 8147 CONECT 8143 8141 8144 8145 8161 CONECT 8144 8143 8162 CONECT 8145 8143 8146 8147 8163 CONECT 8146 8145 8164 CONECT 8147 8142 8145 8148 8165 CONECT 8148 8147 8149 8157 CONECT 8149 8148 8150 8166 CONECT 8150 8149 8151 CONECT 8151 8150 8152 8157 CONECT 8152 8151 8153 8154 CONECT 8153 8152 8167 8168 CONECT 8154 8152 8155 CONECT 8155 8154 8156 8169 CONECT 8156 8155 8157 CONECT 8157 8148 8151 8156 CONECT 8158 8140 CONECT 8159 8140 CONECT 8160 8141 CONECT 8161 8143 CONECT 8162 8144 CONECT 8163 8145 CONECT 8164 8146 CONECT 8165 8147 CONECT 8166 8149 CONECT 8167 8153 CONECT 8168 8153 CONECT 8169 8155 CONECT 8194 8040 CONECT 8211 8040 CONECT 8267 8085 CONECT 8290 8085 CONECT 8365 8130 CONECT 8366 8130 CONECT 8371 8130 CONECT 8445 8040 CONECT 8454 8085 CONECT 8455 8085 MASTER 432 0 8 26 18 0 0 6 4394 6 149 45 END