data_9A5E # _entry.id 9A5E # loop_ _atom_type.symbol C H N O S # loop_ _audit_author.name _audit_author.pdbx_ordinal "Stahl, K." 1 "Brock, O." 2 "Rappsilber, J." 3 # loop_ _audit_conform.dict_location _audit_conform.dict_name _audit_conform.dict_version https://mmcif.wwpdb.org/dictionaries/ascii/mmcif_ihm_ext.dic mmcif_ihm_ext.dic 1.26 http://mmcif.wwpdb.org/dictionaries/ascii/mmcif_pdbx_v50.dic mmcif_pdbx.dic 5.395 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 9A5E _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2024-01-23 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2024-09-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9A5E pdb_00009a5e 10.2210/pdb9a5e/pdb PDB-Dev PDBDEV_00000271 PDBDEV_00000271 ? # _ihm_entry_collection.id PDBDEV_G_1000003 _ihm_entry_collection.name . _ihm_entry_collection.details 'Collection of entries belonging to the publication: "Modelling protein complexes with crosslinking mass spectrometry and deep learning"' # _ihm_entry_collection_mapping.collection_id PDBDEV_G_1000003 _ihm_entry_collection_mapping.entry_id 9A5E # loop_ _chem_comp.formula _chem_comp.formula_weight _chem_comp.id _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.type "C3 H7 N O2" 89.094 ALA . ALANINE . "L-peptide linking" "C6 H15 N4 O2 1" 175.212 ARG . ARGININE . "L-peptide linking" "C4 H8 N2 O3" 132.119 ASN . ASPARAGINE . "L-peptide linking" "C4 H7 N O4" 133.103 ASP . "ASPARTIC ACID" . "L-peptide linking" "C3 H7 N O2 S" 121.154 CYS . CYSTEINE . "L-peptide linking" "C5 H10 N2 O3" 146.146 GLN . GLUTAMINE . "L-peptide linking" "C5 H9 N O4" 147.13 GLU . "GLUTAMIC ACID" . "L-peptide linking" "C2 H5 N O2" 75.067 GLY . GLYCINE . "peptide linking" "C6 H10 N3 O2 1" 156.165 HIS . HISTIDINE . "L-peptide linking" "C6 H13 N O2" 131.175 ILE . ISOLEUCINE . "L-peptide linking" "C6 H13 N O2" 131.175 LEU . LEUCINE . "L-peptide linking" "C6 H15 N2 O2 1" 147.198 LYS . LYSINE . "L-peptide linking" "C5 H11 N O2 S" 149.208 MET . METHIONINE . "L-peptide linking" "C9 H11 N O2" 165.192 PHE . PHENYLALANINE . "L-peptide linking" "C5 H9 N O2" 115.132 PRO . PROLINE . "L-peptide linking" "C3 H7 N O3" 105.093 SER . SERINE . "L-peptide linking" "C4 H9 N O3" 119.12 THR . THREONINE . "L-peptide linking" "C11 H12 N2 O2" 204.229 TRP . TRYPTOPHAN . "L-peptide linking" "C9 H11 N O3" 181.191 TYR . TYROSINE . "L-peptide linking" "C5 H11 N O2" 117.148 VAL . VALINE . "L-peptide linking" # _citation.country . _citation.id 1 _citation.journal_abbrev "Nat. Commun." _citation.journal_id_ASTM . _citation.journal_id_CSD . _citation.journal_id_ISSN . _citation.journal_issue . _citation.journal_volume 15 _citation.page_first 7866 _citation.page_last . _citation.pdbx_database_id_DOI 10.1038/s41467-024-51771-2 _citation.pdbx_database_id_PubMed 39251624 _citation.title "Modelling protein complexes with crosslinking mass spectrometry and deep learning" _citation.year 2024 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal 1 "Stahl, K." 1 1 "Warneke, R." 2 1 "Demann, L." 3 1 "Bremenkamp, R." 4 1 "Hormes, B." 5 1 "Brock, O." 6 1 "Stulke, J." 7 1 "Rappsilber, J." 8 # loop_ _entity.details _entity.formula_weight _entity.id _entity.pdbx_description _entity.pdbx_number_of_molecules _entity.src_method _entity.type . 54526.312 1 DPO41_BACSU 1 MAN POLYMER . 8956.013 2 RPOZ_BACSU 1 MAN POLYMER # loop_ _entity_poly.entity_id _entity_poly.nstd_chirality _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_sequence_evidence_code _entity_poly.pdbx_strand_id _entity_poly.type 1 . NO NO MPGKSRIIFHIDMNSFYASVEMAYDPALRGKPVAVAGNVKERKGIVVTCSYEARARGVKTTMPVWQAKRHCPELIVLPPNFDRYRNSSRAMFTILREYTDLVEPVSIDEGYMDMTDTPYSSRALETAKEIQSRLQKELLLPSSIGIAPNKFLAKMASDMKKPLGITILRKRQVPDILWPLPVGEMHGVGKKTAEKLKGLGIHTIGELAAADEHSLKRLLGINGPRLKNKANGIHHAPVDPERIYEFKSVGNSSTLSHDSSDEEELLGVFRKLAASVSDRLQRKEVMASKLFIMIRYADWRTITRSTTLRNPIDQKNDILKEAEHLFFKHWNKNPVRLLGITGTDLVEKEQAYKQLDLFSFNEDAKDEPIQQMMEKLNKKYGTKLIRKGATLKKEESKTKGTSFNKDFFQDEKKS MPGKSRIIFHIDMNSFYASVEMAYDPALRGKPVAVAGNVKERKGIVVTCSYEARARGVKTTMPVWQAKRHCPELIVLPPNFDRYRNSSRAMFTILREYTDLVEPVSIDEGYMDMTDTPYSSRALETAKEIQSRLQKELLLPSSIGIAPNKFLAKMASDMKKPLGITILRKRQVPDILWPLPVGEMHGVGKKTAEKLKGLGIHTIGELAAADEHSLKRLLGINGPRLKNKANGIHHAPVDPERIYEFKSVGNSSTLSHDSSDEEELLGVFRKLAASVSDRLQRKEVMASKLFIMIRYADWRTITRSTTLRNPIDQKNDILKEAEHLFFKHWNKNPVRLLGITGTDLVEKEQAYKQLDLFSFNEDAKDEPIQQMMEKLNKKYGTKLIRKGATLKKEESKTKGTSFNKDFFQDEKKS . A polypeptide(L) 2 . NO NO MLDPSIDSLMNKLDSKYTLVTVSARRAREMQIKKDQMIEHTISHKYVGKALEEIDAGLLSFEKEDRE MLDPSIDSLMNKLDSKYTLVTVSARRAREMQIKKDQMIEHTISHKYVGKALEEIDAGLLSFEKEDRE . B polypeptide(L) # loop_ _entity_poly_seq.entity_id _entity_poly_seq.hetero _entity_poly_seq.mon_id _entity_poly_seq.num 1 . MET 1 1 . PRO 2 1 . GLY 3 1 . LYS 4 1 . SER 5 1 . ARG 6 1 . ILE 7 1 . ILE 8 1 . PHE 9 1 . HIS 10 1 . ILE 11 1 . ASP 12 1 . MET 13 1 . ASN 14 1 . SER 15 1 . PHE 16 1 . TYR 17 1 . ALA 18 1 . SER 19 1 . VAL 20 1 . GLU 21 1 . MET 22 1 . ALA 23 1 . TYR 24 1 . ASP 25 1 . PRO 26 1 . ALA 27 1 . LEU 28 1 . ARG 29 1 . GLY 30 1 . LYS 31 1 . PRO 32 1 . VAL 33 1 . ALA 34 1 . VAL 35 1 . ALA 36 1 . GLY 37 1 . ASN 38 1 . VAL 39 1 . LYS 40 1 . GLU 41 1 . ARG 42 1 . LYS 43 1 . GLY 44 1 . ILE 45 1 . VAL 46 1 . VAL 47 1 . THR 48 1 . CYS 49 1 . SER 50 1 . TYR 51 1 . GLU 52 1 . ALA 53 1 . ARG 54 1 . ALA 55 1 . ARG 56 1 . GLY 57 1 . VAL 58 1 . LYS 59 1 . THR 60 1 . THR 61 1 . MET 62 1 . PRO 63 1 . VAL 64 1 . TRP 65 1 . GLN 66 1 . ALA 67 1 . LYS 68 1 . ARG 69 1 . HIS 70 1 . CYS 71 1 . PRO 72 1 . GLU 73 1 . LEU 74 1 . ILE 75 1 . VAL 76 1 . LEU 77 1 . PRO 78 1 . PRO 79 1 . ASN 80 1 . PHE 81 1 . ASP 82 1 . ARG 83 1 . TYR 84 1 . ARG 85 1 . ASN 86 1 . SER 87 1 . SER 88 1 . ARG 89 1 . ALA 90 1 . MET 91 1 . PHE 92 1 . THR 93 1 . ILE 94 1 . LEU 95 1 . ARG 96 1 . GLU 97 1 . TYR 98 1 . THR 99 1 . ASP 100 1 . LEU 101 1 . VAL 102 1 . GLU 103 1 . PRO 104 1 . VAL 105 1 . SER 106 1 . ILE 107 1 . ASP 108 1 . GLU 109 1 . GLY 110 1 . TYR 111 1 . MET 112 1 . ASP 113 1 . MET 114 1 . THR 115 1 . ASP 116 1 . THR 117 1 . PRO 118 1 . TYR 119 1 . SER 120 1 . SER 121 1 . ARG 122 1 . ALA 123 1 . LEU 124 1 . GLU 125 1 . THR 126 1 . ALA 127 1 . LYS 128 1 . GLU 129 1 . ILE 130 1 . GLN 131 1 . SER 132 1 . ARG 133 1 . LEU 134 1 . GLN 135 1 . LYS 136 1 . GLU 137 1 . LEU 138 1 . LEU 139 1 . LEU 140 1 . PRO 141 1 . SER 142 1 . SER 143 1 . ILE 144 1 . GLY 145 1 . ILE 146 1 . ALA 147 1 . PRO 148 1 . ASN 149 1 . LYS 150 1 . PHE 151 1 . LEU 152 1 . ALA 153 1 . LYS 154 1 . MET 155 1 . ALA 156 1 . SER 157 1 . ASP 158 1 . MET 159 1 . LYS 160 1 . LYS 161 1 . PRO 162 1 . LEU 163 1 . GLY 164 1 . ILE 165 1 . THR 166 1 . ILE 167 1 . LEU 168 1 . ARG 169 1 . LYS 170 1 . ARG 171 1 . GLN 172 1 . VAL 173 1 . PRO 174 1 . ASP 175 1 . ILE 176 1 . LEU 177 1 . TRP 178 1 . PRO 179 1 . LEU 180 1 . PRO 181 1 . VAL 182 1 . GLY 183 1 . GLU 184 1 . MET 185 1 . HIS 186 1 . GLY 187 1 . VAL 188 1 . GLY 189 1 . LYS 190 1 . LYS 191 1 . THR 192 1 . ALA 193 1 . GLU 194 1 . LYS 195 1 . LEU 196 1 . LYS 197 1 . GLY 198 1 . LEU 199 1 . GLY 200 1 . ILE 201 1 . HIS 202 1 . THR 203 1 . ILE 204 1 . GLY 205 1 . GLU 206 1 . LEU 207 1 . ALA 208 1 . ALA 209 1 . ALA 210 1 . ASP 211 1 . GLU 212 1 . HIS 213 1 . SER 214 1 . LEU 215 1 . LYS 216 1 . ARG 217 1 . LEU 218 1 . LEU 219 1 . GLY 220 1 . ILE 221 1 . ASN 222 1 . GLY 223 1 . PRO 224 1 . ARG 225 1 . LEU 226 1 . LYS 227 1 . ASN 228 1 . LYS 229 1 . ALA 230 1 . ASN 231 1 . GLY 232 1 . ILE 233 1 . HIS 234 1 . HIS 235 1 . ALA 236 1 . PRO 237 1 . VAL 238 1 . ASP 239 1 . PRO 240 1 . GLU 241 1 . ARG 242 1 . ILE 243 1 . TYR 244 1 . GLU 245 1 . PHE 246 1 . LYS 247 1 . SER 248 1 . VAL 249 1 . GLY 250 1 . ASN 251 1 . SER 252 1 . SER 253 1 . THR 254 1 . LEU 255 1 . SER 256 1 . HIS 257 1 . ASP 258 1 . SER 259 1 . SER 260 1 . ASP 261 1 . GLU 262 1 . GLU 263 1 . GLU 264 1 . LEU 265 1 . LEU 266 1 . GLY 267 1 . VAL 268 1 . PHE 269 1 . ARG 270 1 . LYS 271 1 . LEU 272 1 . ALA 273 1 . ALA 274 1 . SER 275 1 . VAL 276 1 . SER 277 1 . ASP 278 1 . ARG 279 1 . LEU 280 1 . GLN 281 1 . ARG 282 1 . LYS 283 1 . GLU 284 1 . VAL 285 1 . MET 286 1 . ALA 287 1 . SER 288 1 . LYS 289 1 . LEU 290 1 . PHE 291 1 . ILE 292 1 . MET 293 1 . ILE 294 1 . ARG 295 1 . TYR 296 1 . ALA 297 1 . ASP 298 1 . TRP 299 1 . ARG 300 1 . THR 301 1 . ILE 302 1 . THR 303 1 . ARG 304 1 . SER 305 1 . THR 306 1 . THR 307 1 . LEU 308 1 . ARG 309 1 . ASN 310 1 . PRO 311 1 . ILE 312 1 . ASP 313 1 . GLN 314 1 . LYS 315 1 . ASN 316 1 . ASP 317 1 . ILE 318 1 . LEU 319 1 . LYS 320 1 . GLU 321 1 . ALA 322 1 . GLU 323 1 . HIS 324 1 . LEU 325 1 . PHE 326 1 . PHE 327 1 . LYS 328 1 . HIS 329 1 . TRP 330 1 . ASN 331 1 . LYS 332 1 . ASN 333 1 . PRO 334 1 . VAL 335 1 . ARG 336 1 . LEU 337 1 . LEU 338 1 . GLY 339 1 . ILE 340 1 . THR 341 1 . GLY 342 1 . THR 343 1 . ASP 344 1 . LEU 345 1 . VAL 346 1 . GLU 347 1 . LYS 348 1 . GLU 349 1 . GLN 350 1 . ALA 351 1 . TYR 352 1 . LYS 353 1 . GLN 354 1 . LEU 355 1 . ASP 356 1 . LEU 357 1 . PHE 358 1 . SER 359 1 . PHE 360 1 . ASN 361 1 . GLU 362 1 . ASP 363 1 . ALA 364 1 . LYS 365 1 . ASP 366 1 . GLU 367 1 . PRO 368 1 . ILE 369 1 . GLN 370 1 . GLN 371 1 . MET 372 1 . MET 373 1 . GLU 374 1 . LYS 375 1 . LEU 376 1 . ASN 377 1 . LYS 378 1 . LYS 379 1 . TYR 380 1 . GLY 381 1 . THR 382 1 . LYS 383 1 . LEU 384 1 . ILE 385 1 . ARG 386 1 . LYS 387 1 . GLY 388 1 . ALA 389 1 . THR 390 1 . LEU 391 1 . LYS 392 1 . LYS 393 1 . GLU 394 1 . GLU 395 1 . SER 396 1 . LYS 397 1 . THR 398 1 . LYS 399 1 . GLY 400 1 . THR 401 1 . SER 402 1 . PHE 403 1 . ASN 404 1 . LYS 405 1 . ASP 406 1 . PHE 407 1 . PHE 408 1 . GLN 409 1 . ASP 410 1 . GLU 411 1 . LYS 412 1 . LYS 413 1 . SER 414 2 . MET 1 2 . LEU 2 2 . ASP 3 2 . PRO 4 2 . SER 5 2 . ILE 6 2 . ASP 7 2 . SER 8 2 . LEU 9 2 . MET 10 2 . ASN 11 2 . LYS 12 2 . LEU 13 2 . ASP 14 2 . SER 15 2 . LYS 16 2 . TYR 17 2 . THR 18 2 . LEU 19 2 . VAL 20 2 . THR 21 2 . VAL 22 2 . SER 23 2 . ALA 24 2 . ARG 25 2 . ARG 26 2 . ALA 27 2 . ARG 28 2 . GLU 29 2 . MET 30 2 . GLN 31 2 . ILE 32 2 . LYS 33 2 . LYS 34 2 . ASP 35 2 . GLN 36 2 . MET 37 2 . ILE 38 2 . GLU 39 2 . HIS 40 2 . THR 41 2 . ILE 42 2 . SER 43 2 . HIS 44 2 . LYS 45 2 . TYR 46 2 . VAL 47 2 . GLY 48 2 . LYS 49 2 . ALA 50 2 . LEU 51 2 . GLU 52 2 . GLU 53 2 . ILE 54 2 . ASP 55 2 . ALA 56 2 . GLY 57 2 . LEU 58 2 . LEU 59 2 . SER 60 2 . PHE 61 2 . GLU 62 2 . LYS 63 2 . GLU 64 2 . ASP 65 2 . ARG 66 2 . GLU 67 # _ihm_chemical_component_descriptor.auth_name SDA _ihm_chemical_component_descriptor.chemical_name "succinimidyl 4,4'-azipentanoate" _ihm_chemical_component_descriptor.common_name . _ihm_chemical_component_descriptor.details . _ihm_chemical_component_descriptor.id 1 _ihm_chemical_component_descriptor.inchi 1S/C9H11N3O4/c1-9(10-11-9)5-4-8(15)16-12-6(13)2-3-7(12)14/h2-5H2,1H3 _ihm_chemical_component_descriptor.inchi_key " SYYLQNPWAPHRFV-UHFFFAOYSA-N" _ihm_chemical_component_descriptor.smiles CC1(N=N1)CCC(ON2C(CCC2=O)=O)=O _ihm_chemical_component_descriptor.smiles_canonical . # _ihm_cross_link_list.comp_id_1 LYS _ihm_cross_link_list.comp_id_2 LYS _ihm_cross_link_list.dataset_list_id 1 _ihm_cross_link_list.details . _ihm_cross_link_list.entity_description_1 DPO41_BACSU _ihm_cross_link_list.entity_description_2 RPOZ_BACSU _ihm_cross_link_list.entity_id_1 1 _ihm_cross_link_list.entity_id_2 2 _ihm_cross_link_list.group_id 1 _ihm_cross_link_list.id 1 _ihm_cross_link_list.linker_chem_comp_descriptor_id 1 _ihm_cross_link_list.linker_type SDA _ihm_cross_link_list.seq_id_1 397 _ihm_cross_link_list.seq_id_2 63 # _ihm_cross_link_restraint.asym_id_1 A _ihm_cross_link_restraint.asym_id_2 B _ihm_cross_link_restraint.atom_id_1 . _ihm_cross_link_restraint.atom_id_2 . _ihm_cross_link_restraint.comp_id_1 LYS _ihm_cross_link_restraint.comp_id_2 LYS _ihm_cross_link_restraint.conditional_crosslink_flag . _ihm_cross_link_restraint.distance_threshold 25 _ihm_cross_link_restraint.entity_id_1 1 _ihm_cross_link_restraint.entity_id_2 2 _ihm_cross_link_restraint.group_id 1 _ihm_cross_link_restraint.id 1 _ihm_cross_link_restraint.model_granularity by-residue _ihm_cross_link_restraint.pseudo_site_flag NO _ihm_cross_link_restraint.psi 0.95 _ihm_cross_link_restraint.restraint_type "upper bound" _ihm_cross_link_restraint.seq_id_1 397 _ihm_cross_link_restraint.seq_id_2 63 _ihm_cross_link_restraint.sigma_1 . _ihm_cross_link_restraint.sigma_2 . # _ihm_dataset_group.application . _ihm_dataset_group.details . _ihm_dataset_group.id 1 _ihm_dataset_group.name . # _ihm_dataset_group_link.dataset_list_id 1 _ihm_dataset_group_link.group_id 1 # _ihm_dataset_list.data_type "Crosslinking-MS data" _ihm_dataset_list.database_hosted YES _ihm_dataset_list.details . _ihm_dataset_list.id 1 # _ihm_dataset_related_db_reference.accession_code PXD035508 _ihm_dataset_related_db_reference.dataset_list_id 1 _ihm_dataset_related_db_reference.db_name PRIDE _ihm_dataset_related_db_reference.details . _ihm_dataset_related_db_reference.id 1 _ihm_dataset_related_db_reference.version . # loop_ _ihm_entity_poly_segment.comp_id_begin _ihm_entity_poly_segment.comp_id_end _ihm_entity_poly_segment.entity_id _ihm_entity_poly_segment.id _ihm_entity_poly_segment.seq_id_begin _ihm_entity_poly_segment.seq_id_end MET SER 1 1 1 414 MET GLU 2 2 1 67 # _ihm_model_group.details . _ihm_model_group.id 1 _ihm_model_group.name . # _ihm_model_group_link.group_id 1 _ihm_model_group_link.model_id 1 # _ihm_model_list.assembly_id 1 _ihm_model_list.model_id 1 _ihm_model_list.model_name . _ihm_model_list.protocol_id 1 _ihm_model_list.representation_id 1 # _ihm_model_representation.details . _ihm_model_representation.id 1 _ihm_model_representation.name . # loop_ _ihm_model_representation_details.description _ihm_model_representation_details.entity_asym_id _ihm_model_representation_details.entity_description _ihm_model_representation_details.entity_id _ihm_model_representation_details.entity_poly_segment_id _ihm_model_representation_details.id _ihm_model_representation_details.model_granularity _ihm_model_representation_details.model_mode _ihm_model_representation_details.model_object_count _ihm_model_representation_details.model_object_primitive _ihm_model_representation_details.representation_id _ihm_model_representation_details.starting_model_id . A DPO41_BACSU 1 1 1 by-atom flexible . atomistic 1 . . B RPOZ_BACSU 2 2 2 by-atom flexible . atomistic 1 . # _ihm_modeling_protocol.details . _ihm_modeling_protocol.id 1 _ihm_modeling_protocol.num_steps 1 _ihm_modeling_protocol.protocol_name AlphaLink2 # _ihm_modeling_protocol_details.dataset_group_id 1 _ihm_modeling_protocol_details.description . _ihm_modeling_protocol_details.ensemble_flag NO _ihm_modeling_protocol_details.id 1 _ihm_modeling_protocol_details.multi_scale_flag NO _ihm_modeling_protocol_details.multi_state_flag NO _ihm_modeling_protocol_details.num_models_begin 0 _ihm_modeling_protocol_details.num_models_end 1 _ihm_modeling_protocol_details.ordered_flag NO _ihm_modeling_protocol_details.protocol_id 1 _ihm_modeling_protocol_details.script_file_id . _ihm_modeling_protocol_details.software_id 1 _ihm_modeling_protocol_details.step_id 1 _ihm_modeling_protocol_details.step_method AlphaLink2 _ihm_modeling_protocol_details.step_name AlphaLink2 _ihm_modeling_protocol_details.struct_assembly_description . _ihm_modeling_protocol_details.struct_assembly_id 1 # _ihm_struct_assembly.description "Integrative model of DPO41-RPOZ by crosslinking MS and deep learning" _ihm_struct_assembly.id 1 _ihm_struct_assembly.name DPO41-RPOZ # loop_ _ihm_struct_assembly_details.assembly_id _ihm_struct_assembly_details.asym_id _ihm_struct_assembly_details.entity_description _ihm_struct_assembly_details.entity_id _ihm_struct_assembly_details.entity_poly_segment_id _ihm_struct_assembly_details.id _ihm_struct_assembly_details.parent_assembly_id 1 A DPO41_BACSU 1 1 1 1 1 B RPOZ_BACSU 2 2 2 1 # _software.citation_id 1 _software.classification "model building" _software.description "Modelling protein complexes with crosslinking mass spectrometry and deep learning" _software.location https://github.com/Rappsilber-Laboratory/AlphaLink2 _software.name AlphaLink2 _software.pdbx_ordinal 1 _software.type program _software.version 1.0 # _struct.entry_id 9A5E _struct.pdbx_CASP_flag . _struct.pdbx_descriptor . _struct.pdbx_details . _struct.pdbx_model_details . _struct.pdbx_model_type_details . _struct.pdbx_structure_determination_methodology integrative _struct.title "Integrative model of DPO41-RPOZ by crosslinking MS and deep learning" # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_PDB_id _struct_asym.pdbx_alt_id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.pdbx_order _struct_asym.pdbx_type DPO41_BACSU 1 A . . . . . . RPOZ_BACSU 2 B . . . . . . # loop_ _struct_ref.db_code _struct_ref.db_name _struct_ref.details _struct_ref.entity_id _struct_ref.id _struct_ref.pdbx_align_begin _struct_ref.pdbx_align_end _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code A UNP . 1 1 1 . P54545 . MPGKSRIIFHIDMNSFYASVEMAYDPALRGKPVAVAGNVKERKGIVVTCSYEARARGVKTTMPVWQAKRHCPELIVLPPNFDRYRNSSRAMFTILREYTDLVEPVSIDEGYMDMTDTPYSSRALETAKEIQSRLQKELLLPSSIGIAPNKFLAKMASDMKKPLGITILRKRQVPDILWPLPVGEMHGVGKKTAEKLKGLGIHTIGELAAADEHSLKRLLGINGPRLKNKANGIHHAPVDPERIYEFKSVGNSSTLSHDSSDEEELLGVFRKLAASVSDRLQRKEVMASKLFIMIRYADWRTITRSTTLRNPIDQKNDILKEAEHLFFKHWNKNPVRLLGITGTDLVEKEQAYKQLDLFSFNEDAKDEPIQQMMEKLNKKYGTKLIRKGATLKKEESKTKGTSFNKDFFQDEKKS B UNP . 2 2 1 . O35011 . MLDPSIDSLMNKLDSKYTLVTVSARRAREMQIKKDQMIEHTISHKYVGKALEEIDAGLLSFEKEDRE # loop_ _struct_ref_seq.align_id _struct_ref_seq.db_align_beg _struct_ref_seq.db_align_end _struct_ref_seq.ref_id _struct_ref_seq.seq_align_beg _struct_ref_seq.seq_align_end 1 1 414 1 1 414 2 1 67 2 1 67 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code A 1 1 MET 1 1 MET MET A . A 1 2 PRO 2 2 PRO PRO A . A 1 3 GLY 3 3 GLY GLY A . A 1 4 LYS 4 4 LYS LYS A . A 1 5 SER 5 5 SER SER A . A 1 6 ARG 6 6 ARG ARG A . A 1 7 ILE 7 7 ILE ILE A . A 1 8 ILE 8 8 ILE ILE A . A 1 9 PHE 9 9 PHE PHE A . A 1 10 HIS 10 10 HIS HIS A . A 1 11 ILE 11 11 ILE ILE A . A 1 12 ASP 12 12 ASP ASP A . A 1 13 MET 13 13 MET MET A . A 1 14 ASN 14 14 ASN ASN A . A 1 15 SER 15 15 SER SER A . A 1 16 PHE 16 16 PHE PHE A . A 1 17 TYR 17 17 TYR TYR A . A 1 18 ALA 18 18 ALA ALA A . A 1 19 SER 19 19 SER SER A . A 1 20 VAL 20 20 VAL VAL A . A 1 21 GLU 21 21 GLU GLU A . A 1 22 MET 22 22 MET MET A . A 1 23 ALA 23 23 ALA ALA A . A 1 24 TYR 24 24 TYR TYR A . A 1 25 ASP 25 25 ASP ASP A . A 1 26 PRO 26 26 PRO PRO A . A 1 27 ALA 27 27 ALA ALA A . A 1 28 LEU 28 28 LEU LEU A . A 1 29 ARG 29 29 ARG ARG A . A 1 30 GLY 30 30 GLY GLY A . A 1 31 LYS 31 31 LYS LYS A . A 1 32 PRO 32 32 PRO PRO A . A 1 33 VAL 33 33 VAL VAL A . A 1 34 ALA 34 34 ALA ALA A . A 1 35 VAL 35 35 VAL VAL A . A 1 36 ALA 36 36 ALA ALA A . A 1 37 GLY 37 37 GLY GLY A . A 1 38 ASN 38 38 ASN ASN A . A 1 39 VAL 39 39 VAL VAL A . A 1 40 LYS 40 40 LYS LYS A . A 1 41 GLU 41 41 GLU GLU A . A 1 42 ARG 42 42 ARG ARG A . A 1 43 LYS 43 43 LYS LYS A . A 1 44 GLY 44 44 GLY GLY A . A 1 45 ILE 45 45 ILE ILE A . A 1 46 VAL 46 46 VAL VAL A . A 1 47 VAL 47 47 VAL VAL A . A 1 48 THR 48 48 THR THR A . A 1 49 CYS 49 49 CYS CYS A . A 1 50 SER 50 50 SER SER A . A 1 51 TYR 51 51 TYR TYR A . A 1 52 GLU 52 52 GLU GLU A . A 1 53 ALA 53 53 ALA ALA A . A 1 54 ARG 54 54 ARG ARG A . A 1 55 ALA 55 55 ALA ALA A . A 1 56 ARG 56 56 ARG ARG A . A 1 57 GLY 57 57 GLY GLY A . A 1 58 VAL 58 58 VAL VAL A . A 1 59 LYS 59 59 LYS LYS A . A 1 60 THR 60 60 THR THR A . A 1 61 THR 61 61 THR THR A . A 1 62 MET 62 62 MET MET A . A 1 63 PRO 63 63 PRO PRO A . A 1 64 VAL 64 64 VAL VAL A . A 1 65 TRP 65 65 TRP TRP A . A 1 66 GLN 66 66 GLN GLN A . A 1 67 ALA 67 67 ALA ALA A . A 1 68 LYS 68 68 LYS LYS A . A 1 69 ARG 69 69 ARG ARG A . A 1 70 HIS 70 70 HIS HIS A . A 1 71 CYS 71 71 CYS CYS A . A 1 72 PRO 72 72 PRO PRO A . A 1 73 GLU 73 73 GLU GLU A . A 1 74 LEU 74 74 LEU LEU A . A 1 75 ILE 75 75 ILE ILE A . A 1 76 VAL 76 76 VAL VAL A . A 1 77 LEU 77 77 LEU LEU A . A 1 78 PRO 78 78 PRO PRO A . A 1 79 PRO 79 79 PRO PRO A . A 1 80 ASN 80 80 ASN ASN A . A 1 81 PHE 81 81 PHE PHE A . A 1 82 ASP 82 82 ASP ASP A . A 1 83 ARG 83 83 ARG ARG A . A 1 84 TYR 84 84 TYR TYR A . A 1 85 ARG 85 85 ARG ARG A . A 1 86 ASN 86 86 ASN ASN A . A 1 87 SER 87 87 SER SER A . A 1 88 SER 88 88 SER SER A . A 1 89 ARG 89 89 ARG ARG A . A 1 90 ALA 90 90 ALA ALA A . A 1 91 MET 91 91 MET MET A . A 1 92 PHE 92 92 PHE PHE A . A 1 93 THR 93 93 THR THR A . A 1 94 ILE 94 94 ILE ILE A . A 1 95 LEU 95 95 LEU LEU A . A 1 96 ARG 96 96 ARG ARG A . A 1 97 GLU 97 97 GLU GLU A . A 1 98 TYR 98 98 TYR TYR A . A 1 99 THR 99 99 THR THR A . A 1 100 ASP 100 100 ASP ASP A . A 1 101 LEU 101 101 LEU LEU A . A 1 102 VAL 102 102 VAL VAL A . A 1 103 GLU 103 103 GLU GLU A . A 1 104 PRO 104 104 PRO PRO A . A 1 105 VAL 105 105 VAL VAL A . A 1 106 SER 106 106 SER SER A . A 1 107 ILE 107 107 ILE ILE A . A 1 108 ASP 108 108 ASP ASP A . A 1 109 GLU 109 109 GLU GLU A . A 1 110 GLY 110 110 GLY GLY A . A 1 111 TYR 111 111 TYR TYR A . A 1 112 MET 112 112 MET MET A . A 1 113 ASP 113 113 ASP ASP A . A 1 114 MET 114 114 MET MET A . A 1 115 THR 115 115 THR THR A . A 1 116 ASP 116 116 ASP ASP A . A 1 117 THR 117 117 THR THR A . A 1 118 PRO 118 118 PRO PRO A . A 1 119 TYR 119 119 TYR TYR A . A 1 120 SER 120 120 SER SER A . A 1 121 SER 121 121 SER SER A . A 1 122 ARG 122 122 ARG ARG A . A 1 123 ALA 123 123 ALA ALA A . A 1 124 LEU 124 124 LEU LEU A . A 1 125 GLU 125 125 GLU GLU A . A 1 126 THR 126 126 THR THR A . A 1 127 ALA 127 127 ALA ALA A . A 1 128 LYS 128 128 LYS LYS A . A 1 129 GLU 129 129 GLU GLU A . A 1 130 ILE 130 130 ILE ILE A . A 1 131 GLN 131 131 GLN GLN A . A 1 132 SER 132 132 SER SER A . A 1 133 ARG 133 133 ARG ARG A . A 1 134 LEU 134 134 LEU LEU A . A 1 135 GLN 135 135 GLN GLN A . A 1 136 LYS 136 136 LYS LYS A . A 1 137 GLU 137 137 GLU GLU A . A 1 138 LEU 138 138 LEU LEU A . A 1 139 LEU 139 139 LEU LEU A . A 1 140 LEU 140 140 LEU LEU A . A 1 141 PRO 141 141 PRO PRO A . A 1 142 SER 142 142 SER SER A . A 1 143 SER 143 143 SER SER A . A 1 144 ILE 144 144 ILE ILE A . A 1 145 GLY 145 145 GLY GLY A . A 1 146 ILE 146 146 ILE ILE A . A 1 147 ALA 147 147 ALA ALA A . A 1 148 PRO 148 148 PRO PRO A . A 1 149 ASN 149 149 ASN ASN A . A 1 150 LYS 150 150 LYS LYS A . A 1 151 PHE 151 151 PHE PHE A . A 1 152 LEU 152 152 LEU LEU A . A 1 153 ALA 153 153 ALA ALA A . A 1 154 LYS 154 154 LYS LYS A . A 1 155 MET 155 155 MET MET A . A 1 156 ALA 156 156 ALA ALA A . A 1 157 SER 157 157 SER SER A . A 1 158 ASP 158 158 ASP ASP A . A 1 159 MET 159 159 MET MET A . A 1 160 LYS 160 160 LYS LYS A . A 1 161 LYS 161 161 LYS LYS A . A 1 162 PRO 162 162 PRO PRO A . A 1 163 LEU 163 163 LEU LEU A . A 1 164 GLY 164 164 GLY GLY A . A 1 165 ILE 165 165 ILE ILE A . A 1 166 THR 166 166 THR THR A . A 1 167 ILE 167 167 ILE ILE A . A 1 168 LEU 168 168 LEU LEU A . A 1 169 ARG 169 169 ARG ARG A . A 1 170 LYS 170 170 LYS LYS A . A 1 171 ARG 171 171 ARG ARG A . A 1 172 GLN 172 172 GLN GLN A . A 1 173 VAL 173 173 VAL VAL A . A 1 174 PRO 174 174 PRO PRO A . A 1 175 ASP 175 175 ASP ASP A . A 1 176 ILE 176 176 ILE ILE A . A 1 177 LEU 177 177 LEU LEU A . A 1 178 TRP 178 178 TRP TRP A . A 1 179 PRO 179 179 PRO PRO A . A 1 180 LEU 180 180 LEU LEU A . A 1 181 PRO 181 181 PRO PRO A . A 1 182 VAL 182 182 VAL VAL A . A 1 183 GLY 183 183 GLY GLY A . A 1 184 GLU 184 184 GLU GLU A . A 1 185 MET 185 185 MET MET A . A 1 186 HIS 186 186 HIS HIS A . A 1 187 GLY 187 187 GLY GLY A . A 1 188 VAL 188 188 VAL VAL A . A 1 189 GLY 189 189 GLY GLY A . A 1 190 LYS 190 190 LYS LYS A . A 1 191 LYS 191 191 LYS LYS A . A 1 192 THR 192 192 THR THR A . A 1 193 ALA 193 193 ALA ALA A . A 1 194 GLU 194 194 GLU GLU A . A 1 195 LYS 195 195 LYS LYS A . A 1 196 LEU 196 196 LEU LEU A . A 1 197 LYS 197 197 LYS LYS A . A 1 198 GLY 198 198 GLY GLY A . A 1 199 LEU 199 199 LEU LEU A . A 1 200 GLY 200 200 GLY GLY A . A 1 201 ILE 201 201 ILE ILE A . A 1 202 HIS 202 202 HIS HIS A . A 1 203 THR 203 203 THR THR A . A 1 204 ILE 204 204 ILE ILE A . A 1 205 GLY 205 205 GLY GLY A . A 1 206 GLU 206 206 GLU GLU A . A 1 207 LEU 207 207 LEU LEU A . A 1 208 ALA 208 208 ALA ALA A . A 1 209 ALA 209 209 ALA ALA A . A 1 210 ALA 210 210 ALA ALA A . A 1 211 ASP 211 211 ASP ASP A . A 1 212 GLU 212 212 GLU GLU A . A 1 213 HIS 213 213 HIS HIS A . A 1 214 SER 214 214 SER SER A . A 1 215 LEU 215 215 LEU LEU A . A 1 216 LYS 216 216 LYS LYS A . A 1 217 ARG 217 217 ARG ARG A . A 1 218 LEU 218 218 LEU LEU A . A 1 219 LEU 219 219 LEU LEU A . A 1 220 GLY 220 220 GLY GLY A . A 1 221 ILE 221 221 ILE ILE A . A 1 222 ASN 222 222 ASN ASN A . A 1 223 GLY 223 223 GLY GLY A . A 1 224 PRO 224 224 PRO PRO A . A 1 225 ARG 225 225 ARG ARG A . A 1 226 LEU 226 226 LEU LEU A . A 1 227 LYS 227 227 LYS LYS A . A 1 228 ASN 228 228 ASN ASN A . A 1 229 LYS 229 229 LYS LYS A . A 1 230 ALA 230 230 ALA ALA A . A 1 231 ASN 231 231 ASN ASN A . A 1 232 GLY 232 232 GLY GLY A . A 1 233 ILE 233 233 ILE ILE A . A 1 234 HIS 234 234 HIS HIS A . A 1 235 HIS 235 235 HIS HIS A . A 1 236 ALA 236 236 ALA ALA A . A 1 237 PRO 237 237 PRO PRO A . A 1 238 VAL 238 238 VAL VAL A . A 1 239 ASP 239 239 ASP ASP A . A 1 240 PRO 240 240 PRO PRO A . A 1 241 GLU 241 241 GLU GLU A . A 1 242 ARG 242 242 ARG ARG A . A 1 243 ILE 243 243 ILE ILE A . A 1 244 TYR 244 244 TYR TYR A . A 1 245 GLU 245 245 GLU GLU A . A 1 246 PHE 246 246 PHE PHE A . A 1 247 LYS 247 247 LYS LYS A . A 1 248 SER 248 248 SER SER A . A 1 249 VAL 249 249 VAL VAL A . A 1 250 GLY 250 250 GLY GLY A . A 1 251 ASN 251 251 ASN ASN A . A 1 252 SER 252 252 SER SER A . A 1 253 SER 253 253 SER SER A . A 1 254 THR 254 254 THR THR A . A 1 255 LEU 255 255 LEU LEU A . A 1 256 SER 256 256 SER SER A . A 1 257 HIS 257 257 HIS HIS A . A 1 258 ASP 258 258 ASP ASP A . A 1 259 SER 259 259 SER SER A . A 1 260 SER 260 260 SER SER A . A 1 261 ASP 261 261 ASP ASP A . A 1 262 GLU 262 262 GLU GLU A . A 1 263 GLU 263 263 GLU GLU A . A 1 264 GLU 264 264 GLU GLU A . A 1 265 LEU 265 265 LEU LEU A . A 1 266 LEU 266 266 LEU LEU A . A 1 267 GLY 267 267 GLY GLY A . A 1 268 VAL 268 268 VAL VAL A . A 1 269 PHE 269 269 PHE PHE A . A 1 270 ARG 270 270 ARG ARG A . A 1 271 LYS 271 271 LYS LYS A . A 1 272 LEU 272 272 LEU LEU A . A 1 273 ALA 273 273 ALA ALA A . A 1 274 ALA 274 274 ALA ALA A . A 1 275 SER 275 275 SER SER A . A 1 276 VAL 276 276 VAL VAL A . A 1 277 SER 277 277 SER SER A . A 1 278 ASP 278 278 ASP ASP A . A 1 279 ARG 279 279 ARG ARG A . A 1 280 LEU 280 280 LEU LEU A . A 1 281 GLN 281 281 GLN GLN A . A 1 282 ARG 282 282 ARG ARG A . A 1 283 LYS 283 283 LYS LYS A . A 1 284 GLU 284 284 GLU GLU A . A 1 285 VAL 285 285 VAL VAL A . A 1 286 MET 286 286 MET MET A . A 1 287 ALA 287 287 ALA ALA A . A 1 288 SER 288 288 SER SER A . A 1 289 LYS 289 289 LYS LYS A . A 1 290 LEU 290 290 LEU LEU A . A 1 291 PHE 291 291 PHE PHE A . A 1 292 ILE 292 292 ILE ILE A . A 1 293 MET 293 293 MET MET A . A 1 294 ILE 294 294 ILE ILE A . A 1 295 ARG 295 295 ARG ARG A . A 1 296 TYR 296 296 TYR TYR A . A 1 297 ALA 297 297 ALA ALA A . A 1 298 ASP 298 298 ASP ASP A . A 1 299 TRP 299 299 TRP TRP A . A 1 300 ARG 300 300 ARG ARG A . A 1 301 THR 301 301 THR THR A . A 1 302 ILE 302 302 ILE ILE A . A 1 303 THR 303 303 THR THR A . A 1 304 ARG 304 304 ARG ARG A . A 1 305 SER 305 305 SER SER A . A 1 306 THR 306 306 THR THR A . A 1 307 THR 307 307 THR THR A . A 1 308 LEU 308 308 LEU LEU A . A 1 309 ARG 309 309 ARG ARG A . A 1 310 ASN 310 310 ASN ASN A . A 1 311 PRO 311 311 PRO PRO A . A 1 312 ILE 312 312 ILE ILE A . A 1 313 ASP 313 313 ASP ASP A . A 1 314 GLN 314 314 GLN GLN A . A 1 315 LYS 315 315 LYS LYS A . A 1 316 ASN 316 316 ASN ASN A . A 1 317 ASP 317 317 ASP ASP A . A 1 318 ILE 318 318 ILE ILE A . A 1 319 LEU 319 319 LEU LEU A . A 1 320 LYS 320 320 LYS LYS A . A 1 321 GLU 321 321 GLU GLU A . A 1 322 ALA 322 322 ALA ALA A . A 1 323 GLU 323 323 GLU GLU A . A 1 324 HIS 324 324 HIS HIS A . A 1 325 LEU 325 325 LEU LEU A . A 1 326 PHE 326 326 PHE PHE A . A 1 327 PHE 327 327 PHE PHE A . A 1 328 LYS 328 328 LYS LYS A . A 1 329 HIS 329 329 HIS HIS A . A 1 330 TRP 330 330 TRP TRP A . A 1 331 ASN 331 331 ASN ASN A . A 1 332 LYS 332 332 LYS LYS A . A 1 333 ASN 333 333 ASN ASN A . A 1 334 PRO 334 334 PRO PRO A . A 1 335 VAL 335 335 VAL VAL A . A 1 336 ARG 336 336 ARG ARG A . A 1 337 LEU 337 337 LEU LEU A . A 1 338 LEU 338 338 LEU LEU A . A 1 339 GLY 339 339 GLY GLY A . A 1 340 ILE 340 340 ILE ILE A . A 1 341 THR 341 341 THR THR A . A 1 342 GLY 342 342 GLY GLY A . A 1 343 THR 343 343 THR THR A . A 1 344 ASP 344 344 ASP ASP A . A 1 345 LEU 345 345 LEU LEU A . A 1 346 VAL 346 346 VAL VAL A . A 1 347 GLU 347 347 GLU GLU A . A 1 348 LYS 348 348 LYS LYS A . A 1 349 GLU 349 349 GLU GLU A . A 1 350 GLN 350 350 GLN GLN A . A 1 351 ALA 351 351 ALA ALA A . A 1 352 TYR 352 352 TYR TYR A . A 1 353 LYS 353 353 LYS LYS A . A 1 354 GLN 354 354 GLN GLN A . A 1 355 LEU 355 355 LEU LEU A . A 1 356 ASP 356 356 ASP ASP A . A 1 357 LEU 357 357 LEU LEU A . A 1 358 PHE 358 358 PHE PHE A . A 1 359 SER 359 359 SER SER A . A 1 360 PHE 360 360 PHE PHE A . A 1 361 ASN 361 361 ASN ASN A . A 1 362 GLU 362 362 GLU GLU A . A 1 363 ASP 363 363 ASP ASP A . A 1 364 ALA 364 364 ALA ALA A . A 1 365 LYS 365 365 LYS LYS A . A 1 366 ASP 366 366 ASP ASP A . A 1 367 GLU 367 367 GLU GLU A . A 1 368 PRO 368 368 PRO PRO A . A 1 369 ILE 369 369 ILE ILE A . A 1 370 GLN 370 370 GLN GLN A . A 1 371 GLN 371 371 GLN GLN A . A 1 372 MET 372 372 MET MET A . A 1 373 MET 373 373 MET MET A . A 1 374 GLU 374 374 GLU GLU A . A 1 375 LYS 375 375 LYS LYS A . A 1 376 LEU 376 376 LEU LEU A . A 1 377 ASN 377 377 ASN ASN A . A 1 378 LYS 378 378 LYS LYS A . A 1 379 LYS 379 379 LYS LYS A . A 1 380 TYR 380 380 TYR TYR A . A 1 381 GLY 381 381 GLY GLY A . A 1 382 THR 382 382 THR THR A . A 1 383 LYS 383 383 LYS LYS A . A 1 384 LEU 384 384 LEU LEU A . A 1 385 ILE 385 385 ILE ILE A . A 1 386 ARG 386 386 ARG ARG A . A 1 387 LYS 387 387 LYS LYS A . A 1 388 GLY 388 388 GLY GLY A . A 1 389 ALA 389 389 ALA ALA A . A 1 390 THR 390 390 THR THR A . A 1 391 LEU 391 391 LEU LEU A . A 1 392 LYS 392 392 LYS LYS A . A 1 393 LYS 393 393 LYS LYS A . A 1 394 GLU 394 394 GLU GLU A . A 1 395 GLU 395 395 GLU GLU A . A 1 396 SER 396 396 SER SER A . A 1 397 LYS 397 397 LYS LYS A . A 1 398 THR 398 398 THR THR A . A 1 399 LYS 399 399 LYS LYS A . A 1 400 GLY 400 400 GLY GLY A . A 1 401 THR 401 401 THR THR A . A 1 402 SER 402 402 SER SER A . A 1 403 PHE 403 403 PHE PHE A . A 1 404 ASN 404 404 ASN ASN A . A 1 405 LYS 405 405 LYS LYS A . A 1 406 ASP 406 406 ASP ASP A . A 1 407 PHE 407 407 PHE PHE A . A 1 408 PHE 408 408 PHE PHE A . A 1 409 GLN 409 409 GLN GLN A . A 1 410 ASP 410 410 ASP ASP A . A 1 411 GLU 411 411 GLU GLU A . A 1 412 LYS 412 412 LYS LYS A . A 1 413 LYS 413 413 LYS LYS A . A 1 414 SER 414 414 SER SER A . B 2 1 MET 1 1 MET MET B . B 2 2 LEU 2 2 LEU LEU B . B 2 3 ASP 3 3 ASP ASP B . B 2 4 PRO 4 4 PRO PRO B . B 2 5 SER 5 5 SER SER B . B 2 6 ILE 6 6 ILE ILE B . B 2 7 ASP 7 7 ASP ASP B . B 2 8 SER 8 8 SER SER B . B 2 9 LEU 9 9 LEU LEU B . B 2 10 MET 10 10 MET MET B . B 2 11 ASN 11 11 ASN ASN B . B 2 12 LYS 12 12 LYS LYS B . B 2 13 LEU 13 13 LEU LEU B . B 2 14 ASP 14 14 ASP ASP B . B 2 15 SER 15 15 SER SER B . B 2 16 LYS 16 16 LYS LYS B . B 2 17 TYR 17 17 TYR TYR B . B 2 18 THR 18 18 THR THR B . B 2 19 LEU 19 19 LEU LEU B . B 2 20 VAL 20 20 VAL VAL B . B 2 21 THR 21 21 THR THR B . B 2 22 VAL 22 22 VAL VAL B . B 2 23 SER 23 23 SER SER B . B 2 24 ALA 24 24 ALA ALA B . B 2 25 ARG 25 25 ARG ARG B . B 2 26 ARG 26 26 ARG ARG B . B 2 27 ALA 27 27 ALA ALA B . B 2 28 ARG 28 28 ARG ARG B . B 2 29 GLU 29 29 GLU GLU B . B 2 30 MET 30 30 MET MET B . B 2 31 GLN 31 31 GLN GLN B . B 2 32 ILE 32 32 ILE ILE B . B 2 33 LYS 33 33 LYS LYS B . B 2 34 LYS 34 34 LYS LYS B . B 2 35 ASP 35 35 ASP ASP B . B 2 36 GLN 36 36 GLN GLN B . B 2 37 MET 37 37 MET MET B . B 2 38 ILE 38 38 ILE ILE B . B 2 39 GLU 39 39 GLU GLU B . B 2 40 HIS 40 40 HIS HIS B . B 2 41 THR 41 41 THR THR B . B 2 42 ILE 42 42 ILE ILE B . B 2 43 SER 43 43 SER SER B . B 2 44 HIS 44 44 HIS HIS B . B 2 45 LYS 45 45 LYS LYS B . B 2 46 TYR 46 46 TYR TYR B . B 2 47 VAL 47 47 VAL VAL B . B 2 48 GLY 48 48 GLY GLY B . B 2 49 LYS 49 49 LYS LYS B . B 2 50 ALA 50 50 ALA ALA B . B 2 51 LEU 51 51 LEU LEU B . B 2 52 GLU 52 52 GLU GLU B . B 2 53 GLU 53 53 GLU GLU B . B 2 54 ILE 54 54 ILE ILE B . B 2 55 ASP 55 55 ASP ASP B . B 2 56 ALA 56 56 ALA ALA B . B 2 57 GLY 57 57 GLY GLY B . B 2 58 LEU 58 58 LEU LEU B . B 2 59 LEU 59 59 LEU LEU B . B 2 60 SER 60 60 SER SER B . B 2 61 PHE 61 61 PHE PHE B . B 2 62 GLU 62 62 GLU GLU B . B 2 63 LYS 63 63 LYS LYS B . B 2 64 GLU 64 64 GLU GLU B . B 2 65 ASP 65 65 ASP ASP B . B 2 66 ARG 66 66 ARG ARG B . B 2 67 GLU 67 67 GLU GLU B . # # loop_ # #