HEADER TRANSCRIPTION 23-FEB-24 9ARR TITLE CRYSTAL STRUCTURE OF AF9 YEATS DOMAIN IN COMPLEX WITH DICROTONYLATED TITLE 2 AT K1007 AND K1014 MOZ COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN AF-9; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: YEATS DOMAIN; COMPND 5 SYNONYM: ALL1-FUSED GENE FROM CHROMOSOME 9 PROTEIN,MYELOID/LYMPHOID COMPND 6 OR MIXED-LINEAGE LEUKEMIA TRANSLOCATED TO CHROMOSOME 3 PROTEIN,YEATS COMPND 7 DOMAIN-CONTAINING PROTEIN 3; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: HISTONE ACETYLTRANSFERASE KAT6A; COMPND 11 CHAIN: C; COMPND 12 FRAGMENT: RESIDUES 1005-1017 (UNIPROT NUMBERING); COMPND 13 SYNONYM: MOZ,YBF2/SAS3,SAS2 AND TIP60 PROTEIN 3,MYST-3,MONOCYTIC COMPND 14 LEUKEMIA ZINC FINGER PROTEIN,RUNT-RELATED TRANSCRIPTION FACTOR- COMPND 15 BINDING PROTEIN 2,ZINC FINGER PROTEIN 220; COMPND 16 EC: 2.3.1.48; COMPND 17 ENGINEERED: YES; COMPND 18 OTHER_DETAILS: RESIDUES K1007 AND K1014 CROTONYLATED (UNIPROT COMPND 19 NUMBERING) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MLLT3, AF9, YEATS3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS AF9, MOZ, YEATS, CROTONYLATION, CHROMATIN, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR K.SELVAM,T.G.KUTATELADZE REVDAT 3 30-APR-25 9ARR 1 JRNL REVDAT 2 23-APR-25 9ARR 1 JRNL REVDAT 1 22-JAN-25 9ARR 0 JRNL AUTH D.C.BECHT,K.SELVAM,C.LACHANCE,V.COTE,K.LI,M.C.NGUYEN, JRNL AUTH 2 A.PAREEK,X.SHI,H.WEN,M.A.BLANCO,J.COTE,T.G.KUTATELADZE JRNL TITL A MULTIVALENT ENGAGEMENT OF ENL WITH MOZ. JRNL REF NAT.STRUCT.MOL.BIOL. V. 32 709 2025 JRNL REFN ESSN 1545-9985 JRNL PMID 39794553 JRNL DOI 10.1038/S41594-024-01455-8 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0415 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.5 REMARK 3 NUMBER OF REFLECTIONS : 25539 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1318 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2026 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.49 REMARK 3 BIN R VALUE (WORKING SET) : 0.3290 REMARK 3 BIN FREE R VALUE SET COUNT : 109 REMARK 3 BIN FREE R VALUE : 0.3090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2422 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 49 REMARK 3 SOLVENT ATOMS : 127 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.71000 REMARK 3 B22 (A**2) : 5.99000 REMARK 3 B33 (A**2) : -1.42000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.37000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.185 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.174 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.139 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.758 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2534 ; 0.010 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2415 ; 0.002 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3400 ; 1.649 ; 1.682 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5583 ; 0.626 ; 1.593 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 286 ; 7.516 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 27 ; 7.645 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 436 ;15.840 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 350 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2894 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 598 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1153 ; 5.318 ; 4.545 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1153 ; 5.280 ; 4.546 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1436 ; 7.093 ; 8.122 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1437 ; 7.092 ; 8.125 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1381 ; 7.085 ; 5.317 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1382 ; 7.082 ; 5.318 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1965 ;10.165 ; 9.314 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2686 ;12.879 ;48.790 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2676 ;12.899 ;48.370 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 9ARR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-FEB-24. REMARK 100 THE DEPOSITION ID IS D_1000281844. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUN-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0722 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : RDI CMOS_8M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27648 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 45.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.63200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM NITRATE PH 7.1, 20% W/V REMARK 280 PEG 3350, MICROBATCH, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 71.68200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.51050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 71.68200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.51050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 57 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO C 4 C - N - CD ANGL. DEV. = -16.4 DEGREES REMARK 500 PRO C 11 C - N - CD ANGL. DEV. = -23.1 DEGREES REMARK 500 PRO C 11 CA - N - CD ANGL. DEV. = -10.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS B 41 19.18 59.05 REMARK 500 LYS B 92 51.18 -142.43 REMARK 500 PRO C 11 150.37 -44.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 61 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 LI A 201 LI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 67 O REMARK 620 2 TYR A 71 OH 113.7 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9ARO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF AF9 YEATS DOMAIN IN COMPLEX WITH ACETYLATED AT REMARK 900 K1007 MOZ DBREF 9ARR A 1 138 UNP P42568 AF9_HUMAN 1 138 DBREF 9ARR B 1 138 UNP P42568 AF9_HUMAN 1 138 DBREF 9ARR C 1 13 UNP Q92794 KAT6A_HUMAN 1005 1017 SEQRES 1 A 138 MET ALA SER SER CYS ALA VAL GLN VAL LYS LEU GLU LEU SEQRES 2 A 138 GLY HIS ARG ALA GLN VAL ARG LYS LYS PRO THR VAL GLU SEQRES 3 A 138 GLY PHE THR HIS ASP TRP MET VAL PHE VAL ARG GLY PRO SEQRES 4 A 138 GLU HIS SER ASN ILE GLN HIS PHE VAL GLU LYS VAL VAL SEQRES 5 A 138 PHE HIS LEU HIS GLU SER PHE PRO ARG PRO LYS ARG VAL SEQRES 6 A 138 CYS LYS ASP PRO PRO TYR LYS VAL GLU GLU SER GLY TYR SEQRES 7 A 138 ALA GLY PHE ILE LEU PRO ILE GLU VAL TYR PHE LYS ASN SEQRES 8 A 138 LYS GLU GLU PRO ARG LYS VAL ARG PHE ASP TYR ASP LEU SEQRES 9 A 138 PHE LEU HIS LEU GLU GLY HIS PRO PRO VAL ASN HIS LEU SEQRES 10 A 138 ARG CYS GLU LYS LEU THR PHE ASN ASN PRO THR GLU ASP SEQRES 11 A 138 PHE ARG ARG LYS LEU LEU LYS ALA SEQRES 1 B 138 MET ALA SER SER CYS ALA VAL GLN VAL LYS LEU GLU LEU SEQRES 2 B 138 GLY HIS ARG ALA GLN VAL ARG LYS LYS PRO THR VAL GLU SEQRES 3 B 138 GLY PHE THR HIS ASP TRP MET VAL PHE VAL ARG GLY PRO SEQRES 4 B 138 GLU HIS SER ASN ILE GLN HIS PHE VAL GLU LYS VAL VAL SEQRES 5 B 138 PHE HIS LEU HIS GLU SER PHE PRO ARG PRO LYS ARG VAL SEQRES 6 B 138 CYS LYS ASP PRO PRO TYR LYS VAL GLU GLU SER GLY TYR SEQRES 7 B 138 ALA GLY PHE ILE LEU PRO ILE GLU VAL TYR PHE LYS ASN SEQRES 8 B 138 LYS GLU GLU PRO ARG LYS VAL ARG PHE ASP TYR ASP LEU SEQRES 9 B 138 PHE LEU HIS LEU GLU GLY HIS PRO PRO VAL ASN HIS LEU SEQRES 10 B 138 ARG CYS GLU LYS LEU THR PHE ASN ASN PRO THR GLU ASP SEQRES 11 B 138 PHE ARG ARG LYS LEU LEU LYS ALA SEQRES 1 C 13 LEU THR KCR PRO THR LEU LYS ARG LYS KCR PRO PHE LEU MODRES 9ARR KCR C 3 LYS MODIFIED RESIDUE MODRES 9ARR KCR C 10 LYS MODIFIED RESIDUE HET KCR C 3 14 HET KCR C 10 14 HET LI A 201 1 HET NO3 A 202 4 HET NO3 A 203 4 HET PEG A 204 7 HET GOL A 205 6 HET GOL A 206 6 HET GOL A 207 6 HET LI B 201 1 HET NO3 B 202 4 HET NO3 B 203 4 HET GOL B 204 6 HETNAM KCR N-6-CROTONYL-L-LYSINE HETNAM LI LITHIUM ION HETNAM NO3 NITRATE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 KCR 2(C10 H18 N2 O3) FORMUL 4 LI 2(LI 1+) FORMUL 5 NO3 4(N O3 1-) FORMUL 7 PEG C4 H10 O3 FORMUL 8 GOL 4(C3 H8 O3) FORMUL 15 HOH *127(H2 O) HELIX 1 AA1 GLY A 38 SER A 42 5 5 HELIX 2 AA2 ASN A 43 HIS A 46 5 4 HELIX 3 AA3 THR A 128 ALA A 138 1 11 HELIX 4 AA4 GLY B 38 SER B 42 5 5 HELIX 5 AA5 ASN B 43 HIS B 46 5 4 HELIX 6 AA6 THR B 128 LYS B 137 1 10 SHEET 1 AA1 6 TYR A 71 GLY A 77 0 SHEET 2 AA1 6 HIS A 30 ARG A 37 -1 N TRP A 32 O GLU A 75 SHEET 3 AA1 6 SER A 3 VAL A 19 -1 N GLU A 12 O ARG A 37 SHEET 4 AA1 6 SER B 3 VAL B 19 -1 O GLN B 8 N SER A 4 SHEET 5 AA1 6 HIS B 30 ARG B 37 -1 O ARG B 37 N GLU B 12 SHEET 6 AA1 6 TYR B 71 GLY B 77 -1 O GLU B 75 N TRP B 32 SHEET 1 AA2 4 VAL A 114 ASN A 125 0 SHEET 2 AA2 4 SER A 3 VAL A 19 -1 N VAL A 7 O PHE A 124 SHEET 3 AA2 4 SER B 3 VAL B 19 -1 O GLN B 8 N SER A 4 SHEET 4 AA2 4 VAL B 114 ASN B 125 -1 O PHE B 124 N VAL B 7 SHEET 1 AA3 4 LYS A 63 CYS A 66 0 SHEET 2 AA3 4 VAL A 48 HIS A 54 -1 N PHE A 53 O ARG A 64 SHEET 3 AA3 4 PHE A 81 PHE A 89 -1 O PRO A 84 N HIS A 54 SHEET 4 AA3 4 LYS A 97 LEU A 104 -1 O TYR A 102 N LEU A 83 SHEET 1 AA4 4 LYS B 63 CYS B 66 0 SHEET 2 AA4 4 VAL B 48 HIS B 54 -1 N PHE B 53 O ARG B 64 SHEET 3 AA4 4 PHE B 81 PHE B 89 -1 O PRO B 84 N HIS B 54 SHEET 4 AA4 4 LYS B 97 LEU B 104 -1 O PHE B 100 N ILE B 85 LINK C THR C 2 N KCR C 3 1555 1555 1.32 LINK C KCR C 3 N PRO C 4 1555 1555 1.30 LINK C LYS C 9 N KCR C 10 1555 1555 1.30 LINK C KCR C 10 N PRO C 11 1555 1555 1.34 LINK O LYS A 67 LI LI A 201 1555 1555 2.22 LINK OH TYR A 71 LI LI A 201 1555 1555 2.56 LINK O LYS B 67 LI LI B 201 1555 1555 2.56 CISPEP 1 PRO A 69 PRO A 70 0 1.76 CISPEP 2 GLU A 94 PRO A 95 0 -13.24 CISPEP 3 PRO B 69 PRO B 70 0 -0.78 CISPEP 4 GLU B 94 PRO B 95 0 -13.66 CRYST1 143.364 49.021 78.133 90.00 113.64 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006975 0.000000 0.003054 0.00000 SCALE2 0.000000 0.020399 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013972 0.00000 CONECT 544 2426 CONECT 583 2426 CONECT 1694 2460 CONECT 2315 2320 CONECT 2320 2315 2321 CONECT 2321 2320 2322 2332 CONECT 2322 2321 2323 CONECT 2323 2322 2324 CONECT 2324 2323 2325 CONECT 2325 2324 2326 CONECT 2326 2325 2327 CONECT 2327 2326 2328 2329 CONECT 2328 2327 CONECT 2329 2327 2330 CONECT 2330 2329 2331 CONECT 2331 2330 CONECT 2332 2321 2333 2334 CONECT 2333 2332 CONECT 2334 2332 CONECT 2378 2385 CONECT 2385 2378 2386 CONECT 2386 2385 2387 2397 CONECT 2387 2386 2388 CONECT 2388 2387 2389 CONECT 2389 2388 2390 CONECT 2390 2389 2391 CONECT 2391 2390 2392 CONECT 2392 2391 2393 2394 CONECT 2393 2392 CONECT 2394 2392 2395 CONECT 2395 2394 2396 CONECT 2396 2395 CONECT 2397 2386 2398 2399 CONECT 2398 2397 CONECT 2399 2397 CONECT 2426 544 583 CONECT 2427 2428 2429 2430 CONECT 2428 2427 CONECT 2429 2427 CONECT 2430 2427 CONECT 2431 2432 2433 2434 CONECT 2432 2431 CONECT 2433 2431 CONECT 2434 2431 CONECT 2435 2436 2437 CONECT 2436 2435 CONECT 2437 2435 2438 CONECT 2438 2437 2439 CONECT 2439 2438 2440 CONECT 2440 2439 2441 CONECT 2441 2440 CONECT 2442 2443 2444 CONECT 2443 2442 CONECT 2444 2442 2445 2446 CONECT 2445 2444 CONECT 2446 2444 2447 CONECT 2447 2446 CONECT 2448 2449 2450 CONECT 2449 2448 CONECT 2450 2448 2451 2452 CONECT 2451 2450 CONECT 2452 2450 2453 CONECT 2453 2452 CONECT 2454 2455 2456 CONECT 2455 2454 CONECT 2456 2454 2457 2458 CONECT 2457 2456 CONECT 2458 2456 2459 CONECT 2459 2458 CONECT 2460 1694 CONECT 2461 2462 2463 2464 CONECT 2462 2461 CONECT 2463 2461 CONECT 2464 2461 CONECT 2465 2466 2467 2468 CONECT 2466 2465 CONECT 2467 2465 CONECT 2468 2465 CONECT 2469 2470 2471 CONECT 2470 2469 CONECT 2471 2469 2472 2473 CONECT 2472 2471 CONECT 2473 2471 2474 CONECT 2474 2473 MASTER 319 0 13 6 18 0 0 6 2598 3 84 23 END