HEADER DNA BINDING PROTEIN, RNA BINDING PROTEIN29-FEB-24 9AUF TITLE CAS9D 20BP R-LOOP COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: HNH NUCLEASE DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: SGRNA; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: 5' TARGET STRAND; COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: NON-TARGET STRAND; COMPND 15 CHAIN: D; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 5; COMPND 18 MOLECULE: 3' TARGET STRAND; COMPND 19 CHAIN: c; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DELTAPROTEOBACTERIA; SOURCE 3 ORGANISM_TAXID: 28221; SOURCE 4 GENE: A2022_01700; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: NICO DE3; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: DELTAPROTEOBACTERIA; SOURCE 10 ORGANISM_TAXID: 28221; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 EXPRESSION_SYSTEM_STRAIN: NICO DE3; SOURCE 14 MOL_ID: 3; SOURCE 15 ORGANISM_SCIENTIFIC: DELTAPROTEOBACTERIA; SOURCE 16 ORGANISM_TAXID: 28221; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 19 EXPRESSION_SYSTEM_STRAIN: NICO DE3; SOURCE 20 MOL_ID: 4; SOURCE 21 ORGANISM_SCIENTIFIC: DELTAPROTEOBACTERIA; SOURCE 22 ORGANISM_TAXID: 28221; SOURCE 23 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 24 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 25 EXPRESSION_SYSTEM_STRAIN: NICO DE3; SOURCE 26 MOL_ID: 5; SOURCE 27 ORGANISM_SCIENTIFIC: DELTAPROTEOBACTERIA; SOURCE 28 ORGANISM_TAXID: 28221; SOURCE 29 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 30 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 31 EXPRESSION_SYSTEM_STRAIN: NICO DE3 KEYWDS DNA/RNA CRISPR CAS9 CAS9D NUCLEASE SGRNA, DNA BINDING PROTEIN, RNA KEYWDS 2 BINDING PROTEIN-DNA-RNA COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR R.FREGOSO OCAMPO,D.W.TAYLOR,J.P.K.BRAVO REVDAT 1 15-JAN-25 9AUF 0 JRNL AUTH R.F.OCAMPO,J.P.K.BRAVO,T.L.DANGERFIELD,I.NOCEDAL,S.A.JIRDE, JRNL AUTH 2 L.M.ALEXANDER,N.C.THOMAS,A.DAS,S.NIELSON,K.A.JOHNSON, JRNL AUTH 3 C.T.BROWN,C.N.BUTTERFIELD,D.S.A.GOLTSMAN,D.W.TAYLOR JRNL TITL DNA TARGETING BY COMPACT CAS9D AND ITS RESURRECTED ANCESTOR. JRNL REF NAT COMMUN V. 16 457 2025 JRNL REFN ESSN 2041-1723 JRNL PMID 39774105 JRNL DOI 10.1038/S41467-024-55573-4 REMARK 2 REMARK 2 RESOLUTION. 2.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.730 REMARK 3 NUMBER OF PARTICLES : 116460 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9AUF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-MAR-24. REMARK 100 THE DEPOSITION ID IS D_1000282000. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : CAS9D TERNARY COMPLEX WITH A REMARK 245 20BP R-LOOP REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.90 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 8000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, c REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ARG A 3 REMARK 465 GLU A 4 REMARK 465 LEU A 5 REMARK 465 VAL A 6 REMARK 465 LEU A 7 REMARK 465 GLY A 8 REMARK 465 ILE A 9 REMARK 465 ASP A 10 REMARK 465 TYR A 11 REMARK 465 GLY A 12 REMARK 465 GLY A 13 REMARK 465 LYS A 14 REMARK 465 TYR A 15 REMARK 465 THR A 16 REMARK 465 GLY A 17 REMARK 465 LEU A 18 REMARK 465 ALA A 19 REMARK 465 VAL A 20 REMARK 465 VAL A 21 REMARK 465 ASP A 22 REMARK 465 ARG A 23 REMARK 465 ARG A 24 REMARK 465 HIS A 25 REMARK 465 ASN A 26 REMARK 465 GLN A 27 REMARK 465 VAL A 28 REMARK 465 LEU A 29 REMARK 465 TYR A 30 REMARK 465 ALA A 31 REMARK 465 ASN A 32 REMARK 465 ARG A 33 REMARK 465 LEU A 34 REMARK 465 LYS A 35 REMARK 465 MET A 36 REMARK 465 ARG A 37 REMARK 465 ASP A 38 REMARK 465 ASP A 39 REMARK 465 VAL A 40 REMARK 465 ALA A 41 REMARK 465 GLY A 42 REMARK 465 ILE A 43 REMARK 465 LYS A 104 REMARK 465 THR A 105 REMARK 465 SER A 106 REMARK 465 GLU A 107 REMARK 465 GLU A 108 REMARK 465 ILE A 109 REMARK 465 GLU A 110 REMARK 465 ALA A 111 REMARK 465 MET A 112 REMARK 465 ASP A 113 REMARK 465 VAL A 114 REMARK 465 GLU A 115 REMARK 465 GLU A 116 REMARK 465 ARG A 117 REMARK 465 LYS A 118 REMARK 465 GLN A 119 REMARK 465 TRP A 120 REMARK 465 GLU A 121 REMARK 465 LYS A 122 REMARK 465 GLU A 123 REMARK 465 LYS A 124 REMARK 465 GLN A 125 REMARK 465 GLU A 126 REMARK 465 TRP A 127 REMARK 465 GLU A 128 REMARK 465 GLU A 129 REMARK 465 THR A 130 REMARK 465 LYS A 131 REMARK 465 ARG A 132 REMARK 465 ASN A 133 REMARK 465 CYS A 187 REMARK 465 GLY A 188 REMARK 465 VAL A 189 REMARK 465 HIS A 271 REMARK 465 THR A 272 REMARK 465 GLU A 273 REMARK 465 HIS A 274 REMARK 465 SER A 275 REMARK 465 LYS A 276 REMARK 465 GLU A 277 REMARK 465 GLU A 278 REMARK 465 ARG A 279 REMARK 465 LYS A 280 REMARK 465 VAL A 281 REMARK 465 PHE A 282 REMARK 465 ARG A 283 REMARK 465 LEU A 284 REMARK 465 ALA A 285 REMARK 465 PRO A 286 REMARK 465 SER A 287 REMARK 465 LEU A 288 REMARK 465 LYS A 289 REMARK 465 THR A 290 REMARK 465 LYS A 291 REMARK 465 ILE A 292 REMARK 465 GLU A 293 REMARK 465 ASN A 294 REMARK 465 VAL A 295 REMARK 465 LEU A 296 REMARK 465 ALA A 297 REMARK 465 VAL A 298 REMARK 465 ILE A 299 REMARK 465 LYS A 300 REMARK 465 ASP A 301 REMARK 465 GLU A 302 REMARK 465 ILE A 303 REMARK 465 LEU A 304 REMARK 465 PRO A 305 REMARK 465 LYS A 306 REMARK 465 PHE A 307 REMARK 465 THR A 308 REMARK 465 VAL A 309 REMARK 465 ASN A 310 REMARK 465 LYS A 311 REMARK 465 VAL A 312 REMARK 465 VAL A 313 REMARK 465 MET A 314 REMARK 465 GLU A 315 REMARK 465 SER A 316 REMARK 465 ASN A 317 REMARK 465 ASN A 318 REMARK 465 PHE A 319 REMARK 465 ASP A 320 REMARK 465 ILE A 321 REMARK 465 ALA A 322 REMARK 465 ALA A 323 REMARK 465 LYS A 324 REMARK 465 THR A 325 REMARK 465 GLN A 326 REMARK 465 GLY A 327 REMARK 465 LYS A 328 REMARK 465 LYS A 329 REMARK 465 ARG A 330 REMARK 465 LEU A 331 REMARK 465 ALA A 332 REMARK 465 LYS A 333 REMARK 465 GLU A 334 REMARK 465 GLU A 335 REMARK 465 TYR A 336 REMARK 465 GLY A 337 REMARK 465 LYS A 338 REMARK 465 GLY A 339 REMARK 465 PRO A 340 REMARK 465 ARG A 341 REMARK 465 GLU A 342 REMARK 465 GLY A 343 REMARK 465 LYS A 344 REMARK 465 GLU A 345 REMARK 465 THR A 346 REMARK 465 ARG A 347 REMARK 465 LYS A 348 REMARK 465 GLU A 349 REMARK 465 ALA A 350 REMARK 465 LEU A 351 REMARK 465 LEU A 352 REMARK 465 ARG A 353 REMARK 465 GLU A 354 REMARK 465 THR A 355 REMARK 465 ASP A 356 REMARK 465 GLY A 357 REMARK 465 ARG A 358 REMARK 465 CYS A 359 REMARK 465 ILE A 360 REMARK 465 TYR A 361 REMARK 465 CYS A 362 REMARK 465 GLY A 363 REMARK 465 LYS A 364 REMARK 465 SER A 365 REMARK 465 ILE A 366 REMARK 465 ASP A 367 REMARK 465 ILE A 368 REMARK 465 SER A 369 REMARK 465 ASN A 370 REMARK 465 ALA A 371 REMARK 465 HIS A 372 REMARK 465 ASP A 373 REMARK 465 ASP A 374 REMARK 465 HIS A 375 REMARK 465 ILE A 376 REMARK 465 PHE A 377 REMARK 465 PRO A 378 REMARK 465 ARG A 379 REMARK 465 LYS A 380 REMARK 465 ALA A 381 REMARK 465 GLY A 382 REMARK 465 GLY A 383 REMARK 465 LEU A 384 REMARK 465 ASN A 385 REMARK 465 ILE A 386 REMARK 465 PHE A 387 REMARK 465 ALA A 388 REMARK 465 ASN A 389 REMARK 465 LEU A 390 REMARK 465 VAL A 391 REMARK 465 ALA A 392 REMARK 465 CYS A 393 REMARK 465 CYS A 394 REMARK 465 ALA A 395 REMARK 465 VAL A 396 REMARK 465 CYS A 397 REMARK 465 ASN A 398 REMARK 465 GLU A 399 REMARK 465 ASN A 400 REMARK 465 LYS A 401 REMARK 465 LYS A 402 REMARK 465 GLY A 403 REMARK 465 ARG A 404 REMARK 465 THR A 405 REMARK 465 PRO A 406 REMARK 465 LEU A 407 REMARK 465 GLU A 408 REMARK 465 SER A 409 REMARK 465 GLY A 410 REMARK 465 ILE A 411 REMARK 465 SER A 412 REMARK 465 PRO A 413 REMARK 465 LYS A 414 REMARK 465 PRO A 415 REMARK 465 GLU A 416 REMARK 465 ILE A 417 REMARK 465 ILE A 418 REMARK 465 ALA A 419 REMARK 465 PHE A 420 REMARK 465 MET A 421 REMARK 465 LYS A 422 REMARK 465 ASN A 423 REMARK 465 ASP A 424 REMARK 465 LEU A 425 REMARK 465 LYS A 426 REMARK 465 LYS A 427 REMARK 465 LYS A 428 REMARK 465 ILE A 429 REMARK 465 LEU A 430 REMARK 465 GLU A 431 REMARK 465 ASP A 432 REMARK 465 ALA A 433 REMARK 465 ARG A 434 REMARK 465 ASN A 435 REMARK 465 ILE A 436 REMARK 465 ASN A 437 REMARK 465 THR A 438 REMARK 465 VAL A 439 REMARK 465 ASP A 440 REMARK 465 PHE A 441 REMARK 465 ASN A 442 REMARK 465 LYS A 443 REMARK 465 TYR A 444 REMARK 465 MET A 445 REMARK 465 SER A 446 REMARK 465 HIS A 447 REMARK 465 ALA A 448 REMARK 465 SER A 449 REMARK 465 ILE A 450 REMARK 465 GLY A 451 REMARK 465 TRP A 452 REMARK 465 ARG A 453 REMARK 465 TYR A 454 REMARK 465 MET A 455 REMARK 465 ARG A 456 REMARK 465 ASP A 457 REMARK 465 ARG A 458 REMARK 465 LEU A 459 REMARK 465 ARG A 460 REMARK 465 GLU A 461 REMARK 465 SER A 462 REMARK 465 ALA A 463 REMARK 465 GLY A 464 REMARK 465 ASN A 465 REMARK 465 LYS A 466 REMARK 465 LYS A 467 REMARK 465 LEU A 468 REMARK 465 PRO A 469 REMARK 465 ILE A 470 REMARK 465 GLU A 471 REMARK 465 ARG A 472 REMARK 465 GLN A 473 REMARK 465 SER A 474 REMARK 465 GLY A 475 REMARK 465 ILE A 476 REMARK 465 TYR A 477 REMARK 465 THR A 478 REMARK 465 ALA A 479 REMARK 465 TYR A 480 REMARK 465 PHE A 481 REMARK 465 ARG A 482 REMARK 465 ARG A 483 REMARK 465 TRP A 484 REMARK 465 TRP A 485 REMARK 465 GLY A 486 REMARK 465 PHE A 487 REMARK 465 LYS A 488 REMARK 465 LYS A 489 REMARK 465 GLU A 490 REMARK 465 ARG A 491 REMARK 465 GLY A 492 REMARK 465 ASN A 493 REMARK 465 THR A 494 REMARK 465 LEU A 495 REMARK 465 HIS A 496 REMARK 465 HIS A 497 REMARK 465 ALA A 498 REMARK 465 LEU A 499 REMARK 465 ASP A 500 REMARK 465 ALA A 501 REMARK 465 VAL A 502 REMARK 465 ILE A 503 REMARK 465 LEU A 504 REMARK 465 ALA A 505 REMARK 465 SER A 506 REMARK 465 ARG A 507 REMARK 465 LYS A 508 REMARK 465 GLY A 509 REMARK 465 TYR A 510 REMARK 465 SER A 511 REMARK 465 ASP A 512 REMARK 465 ASP A 513 REMARK 465 GLY A 514 REMARK 465 LEU A 515 REMARK 465 VAL A 516 REMARK 465 ASP A 517 REMARK 465 MET A 518 REMARK 465 THR A 519 REMARK 465 LEU A 520 REMARK 465 LYS A 521 REMARK 465 PRO A 522 REMARK 465 LYS A 523 REMARK 465 TYR A 524 REMARK 465 ASN A 525 REMARK 465 LYS A 526 REMARK 465 GLY A 527 REMARK 465 GLY A 528 REMARK 465 GLU A 529 REMARK 465 PHE A 530 REMARK 465 ASP A 531 REMARK 465 PRO A 532 REMARK 465 GLU A 533 REMARK 465 LYS A 534 REMARK 465 HIS A 535 REMARK 465 LEU A 536 REMARK 465 PRO A 537 REMARK 465 GLU A 538 REMARK 465 PRO A 539 REMARK 465 ILE A 540 REMARK 465 GLU A 541 REMARK 465 PHE A 542 REMARK 465 LYS A 543 REMARK 465 MET A 544 REMARK 465 ASP A 545 REMARK 465 LYS A 546 REMARK 465 GLY A 547 REMARK 465 SER A 548 REMARK 465 ASN A 744 REMARK 465 SER A 745 REMARK 465 ALA A 746 REMARK 465 GLU A 747 REMARK 465 U B 147 REMARK 465 U B 148 REMARK 465 U B 149 REMARK 465 A B 150 REMARK 465 A B 151 REMARK 465 U B 152 REMARK 465 U B 153 REMARK 465 U B 154 REMARK 465 U B 155 REMARK 465 U B 156 REMARK 465 U B 157 REMARK 465 U B 158 REMARK 465 DA C 1 REMARK 465 DG C 2 REMARK 465 DC C 3 REMARK 465 DT C 4 REMARK 465 DG C 5 REMARK 465 DA C 6 REMARK 465 DA D 1 REMARK 465 DG D 2 REMARK 465 DC D 3 REMARK 465 DA D 4 REMARK 465 DG D 5 REMARK 465 DA D 6 REMARK 465 DA D 7 REMARK 465 DA D 8 REMARK 465 DT D 9 REMARK 465 DC D 10 REMARK 465 DT D 11 REMARK 465 DC D 12 REMARK 465 DT D 13 REMARK 465 DG D 14 REMARK 465 DC D 15 REMARK 465 DT D 16 REMARK 465 DG D 17 REMARK 465 DA D 18 REMARK 465 DC D 19 REMARK 465 DG D 20 REMARK 465 DC D 21 REMARK 465 DA D 22 REMARK 465 DT D 23 REMARK 465 DA D 24 REMARK 465 DA D 25 REMARK 465 DA D 26 REMARK 465 DG D 27 REMARK 465 DA D 28 REMARK 465 DT D 29 REMARK 465 DG D 30 REMARK 465 DA D 31 REMARK 465 DG D 32 REMARK 465 DA D 33 REMARK 465 DC D 34 REMARK 465 DG D 35 REMARK 465 DT D 50 REMARK 465 DC D 51 REMARK 465 DA D 52 REMARK 465 DG D 53 REMARK 465 DC D 54 REMARK 465 DT D 55 REMARK 465 DC c 39 REMARK 465 DA c 40 REMARK 465 DG c 41 REMARK 465 DC c 42 REMARK 465 DA c 43 REMARK 465 DG c 44 REMARK 465 DA c 45 REMARK 465 DG c 46 REMARK 465 DA c 47 REMARK 465 DT c 48 REMARK 465 DT c 49 REMARK 465 DT c 50 REMARK 465 DC c 51 REMARK 465 DT c 52 REMARK 465 DG c 53 REMARK 465 DC c 54 REMARK 465 DT c 55 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 U B 92 C3' - O3' - P ANGL. DEV. = 7.5 DEGREES REMARK 500 G B 142 N9 - C1' - C2' ANGL. DEV. = 12.2 DEGREES REMARK 500 G B 142 O4' - C1' - N9 ANGL. DEV. = 10.4 DEGREES REMARK 500 DG D 38 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 DA D 45 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DT c 23 OP1 - P - OP2 ANGL. DEV. = -9.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 96 19.22 -144.49 REMARK 500 PHE A 174 -1.03 -141.25 REMARK 500 ASN A 176 36.11 -140.81 REMARK 500 ARG A 228 31.35 -96.34 REMARK 500 SER A 551 10.03 -141.80 REMARK 500 ASN A 644 -126.09 55.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-43878 RELATED DB: EMDB REMARK 900 CAS9D 20BP R-LOOP COMPLEX DBREF1 9AUF A 1 747 UNP A0A1F8ZSN4_9DELT DBREF2 9AUF A A0A1F8ZSN4 1 747 DBREF 9AUF B 1 158 PDB 9AUF 9AUF 1 158 DBREF 9AUF C 1 22 PDB 9AUF 9AUF 1 22 DBREF 9AUF D 1 55 PDB 9AUF 9AUF 1 55 DBREF 9AUF c 23 55 PDB 9AUF 9AUF 23 55 SEQADV 9AUF GLU A 529 UNP A0A1F8ZSN GLY 529 CONFLICT SEQADV 9AUF PRO A 532 UNP A0A1F8ZSN SER 532 CONFLICT SEQADV 9AUF MET A 544 UNP A0A1F8ZSN ARG 544 CONFLICT SEQADV 9AUF ARG A 549 UNP A0A1F8ZSN LYS 549 CONFLICT SEQRES 1 A 747 MET GLU ARG GLU LEU VAL LEU GLY ILE ASP TYR GLY GLY SEQRES 2 A 747 LYS TYR THR GLY LEU ALA VAL VAL ASP ARG ARG HIS ASN SEQRES 3 A 747 GLN VAL LEU TYR ALA ASN ARG LEU LYS MET ARG ASP ASP SEQRES 4 A 747 VAL ALA GLY ILE LEU LYS ASP ARG ARG LYS GLN ARG GLY SEQRES 5 A 747 ILE ARG ARG THR ALA GLN THR LYS LYS LYS ARG LEU ARG SEQRES 6 A 747 GLU LEU LYS ASN TYR LEU LYS SER ILE GLY TYR ASN GLU SEQRES 7 A 747 SER THR ALA THR PHE GLU THR VAL TYR SER LEU ALA HIS SEQRES 8 A 747 LYS ARG GLY TYR ASP TYR ALA ASP MET PRO GLU GLU LYS SEQRES 9 A 747 THR SER GLU GLU ILE GLU ALA MET ASP VAL GLU GLU ARG SEQRES 10 A 747 LYS GLN TRP GLU LYS GLU LYS GLN GLU TRP GLU GLU THR SEQRES 11 A 747 LYS ARG ASN SER ARG HIS ARG LYS GLU VAL VAL LYS ASP SEQRES 12 A 747 VAL HIS LYS ALA MET ILE GLU GLY ARG ALA THR GLU GLU SEQRES 13 A 747 GLN ILE LYS ARG VAL GLU ARG ILE PHE ASN LYS GLN TYR SEQRES 14 A 747 ARG PRO LYS ARG PHE ASN ASN ARG ILE LEU THR LYS CYS SEQRES 15 A 747 LYS VAL GLU ASP CYS GLY VAL ASN THR PRO LEU ARG LYS SEQRES 16 A 747 ASN VAL ARG ASP LEU LEU ILE GLU ASN ILE VAL ARG PHE SEQRES 17 A 747 PHE PRO ILE GLU GLN SER GLU LYS ASP ASN LEU LYS ASP SEQRES 18 A 747 ALA VAL LEU ASP LYS ASN ARG ARG GLU GLU VAL LYS SER SEQRES 19 A 747 PHE PHE ARG LYS HIS LYS THR ASP GLU HIS ILE ARG LYS SEQRES 20 A 747 GLN VAL TYR ASP ILE ALA ASP ASN LYS LEU SER GLY ARG SEQRES 21 A 747 THR VAL PHE CYS LYS GLU HIS ILE LEU GLU HIS THR GLU SEQRES 22 A 747 HIS SER LYS GLU GLU ARG LYS VAL PHE ARG LEU ALA PRO SEQRES 23 A 747 SER LEU LYS THR LYS ILE GLU ASN VAL LEU ALA VAL ILE SEQRES 24 A 747 LYS ASP GLU ILE LEU PRO LYS PHE THR VAL ASN LYS VAL SEQRES 25 A 747 VAL MET GLU SER ASN ASN PHE ASP ILE ALA ALA LYS THR SEQRES 26 A 747 GLN GLY LYS LYS ARG LEU ALA LYS GLU GLU TYR GLY LYS SEQRES 27 A 747 GLY PRO ARG GLU GLY LYS GLU THR ARG LYS GLU ALA LEU SEQRES 28 A 747 LEU ARG GLU THR ASP GLY ARG CYS ILE TYR CYS GLY LYS SEQRES 29 A 747 SER ILE ASP ILE SER ASN ALA HIS ASP ASP HIS ILE PHE SEQRES 30 A 747 PRO ARG LYS ALA GLY GLY LEU ASN ILE PHE ALA ASN LEU SEQRES 31 A 747 VAL ALA CYS CYS ALA VAL CYS ASN GLU ASN LYS LYS GLY SEQRES 32 A 747 ARG THR PRO LEU GLU SER GLY ILE SER PRO LYS PRO GLU SEQRES 33 A 747 ILE ILE ALA PHE MET LYS ASN ASP LEU LYS LYS LYS ILE SEQRES 34 A 747 LEU GLU ASP ALA ARG ASN ILE ASN THR VAL ASP PHE ASN SEQRES 35 A 747 LYS TYR MET SER HIS ALA SER ILE GLY TRP ARG TYR MET SEQRES 36 A 747 ARG ASP ARG LEU ARG GLU SER ALA GLY ASN LYS LYS LEU SEQRES 37 A 747 PRO ILE GLU ARG GLN SER GLY ILE TYR THR ALA TYR PHE SEQRES 38 A 747 ARG ARG TRP TRP GLY PHE LYS LYS GLU ARG GLY ASN THR SEQRES 39 A 747 LEU HIS HIS ALA LEU ASP ALA VAL ILE LEU ALA SER ARG SEQRES 40 A 747 LYS GLY TYR SER ASP ASP GLY LEU VAL ASP MET THR LEU SEQRES 41 A 747 LYS PRO LYS TYR ASN LYS GLY GLY GLU PHE ASP PRO GLU SEQRES 42 A 747 LYS HIS LEU PRO GLU PRO ILE GLU PHE LYS MET ASP LYS SEQRES 43 A 747 GLY SER ARG GLY SER ALA LEU HIS ASP ARG ASN PRO LEU SEQRES 44 A 747 SER TYR LYS LYS GLY ILE ILE THR ARG ARG PHE MET VAL SEQRES 45 A 747 THR GLU ILE GLU CYS GLY LYS GLU ASP ASP VAL ILE SER SEQRES 46 A 747 GLU THR TYR ARG GLU LYS LEU LYS GLU ALA PHE LYS ARG SEQRES 47 A 747 PHE ASP THR LYS LYS GLY LYS CYS LEU THR ASP LYS GLU SEQRES 48 A 747 ALA LYS GLU ALA GLY PHE CYS ILE LYS LYS ASN GLU LEU SEQRES 49 A 747 VAL MET SER LEU LYS CYS SER ILE LYS GLY THR GLY PRO SEQRES 50 A 747 GLY GLN MET ILE ARG ILE ASN ASN ASN VAL PHE LYS THR SEQRES 51 A 747 ASN VAL HIS ASN VAL GLY VAL ASP VAL TYR LEU ASP GLU SEQRES 52 A 747 LYS GLY LYS LYS LYS ALA TYR GLU ARG LYS ASN PRO ARG SEQRES 53 A 747 LEU SER LYS HIS PHE ILE GLU PRO PRO PRO GLN PRO ASN SEQRES 54 A 747 GLY ARG VAL SER PHE THR LEU LYS ARG ARG ASP MET VAL SEQRES 55 A 747 THR VAL GLU GLY GLU ASP ALA ILE TYR ARG ILE LYS LYS SEQRES 56 A 747 LEU GLY THR SER PRO THR ILE GLU ALA VAL VAL GLY SER SEQRES 57 A 747 ASP GLY LYS THR ARG THR VAL SER ALA THR LYS LEU THR SEQRES 58 A 747 LYS ALA ASN SER ALA GLU SEQRES 1 B 158 G A C G C A U A A A G A U SEQRES 2 B 158 G A G A C G C G U U A C A SEQRES 3 B 158 G U U A A G G C U C U G A SEQRES 4 B 158 A A A G A G C C U U A A U SEQRES 5 B 158 U G U A A A A C G C C U A SEQRES 6 B 158 U A C A G U G A A G G G A SEQRES 7 B 158 U A U A C G C U U G G G U SEQRES 8 B 158 U U G U C C A G C C U G A SEQRES 9 B 158 G C C U C U A U G C C A G SEQRES 10 B 158 A A A U G G C G C C U U C SEQRES 11 B 158 A U C G U G G G U U A G G SEQRES 12 B 158 A C A U U U A A U U U U U SEQRES 13 B 158 U U SEQRES 1 C 22 DA DG DC DT DG DA DC DG DT DT DT DG DT SEQRES 2 C 22 DA DC DT DC DC DA DG DC DG SEQRES 1 D 55 DA DG DC DA DG DA DA DA DT DC DT DC DT SEQRES 2 D 55 DG DC DT DG DA DC DG DC DA DT DA DA DA SEQRES 3 D 55 DG DA DT DG DA DG DA DC DG DC DT DG DG SEQRES 4 D 55 DA DG DT DA DC DA DA DA DC DG DT DC DA SEQRES 5 D 55 DG DC DT SEQRES 1 c 33 DT DC DT DC DA DT DC DT DT DT DA DT DG SEQRES 2 c 33 DC DG DT DC DA DG DC DA DG DA DG DA DT SEQRES 3 c 33 DT DT DC DT DG DC DT HELIX 1 AA1 LEU A 44 GLY A 75 1 32 HELIX 2 AA2 THR A 80 ALA A 90 1 11 HELIX 3 AA3 HIS A 91 ARG A 93 5 3 HELIX 4 AA4 HIS A 136 GLY A 151 1 16 HELIX 5 AA5 THR A 154 LYS A 167 1 14 HELIX 6 AA6 LEU A 193 ASN A 196 5 4 HELIX 7 AA7 VAL A 197 ARG A 207 1 11 HELIX 8 AA8 GLU A 212 ASP A 225 1 14 HELIX 9 AA9 ARG A 228 LYS A 240 1 13 HELIX 10 AB1 ASP A 242 ASN A 255 1 14 HELIX 11 AB2 THR A 573 ILE A 575 5 3 HELIX 12 AB3 GLU A 576 VAL A 583 5 8 HELIX 13 AB4 SER A 585 PHE A 599 1 15 HELIX 14 AB5 THR A 608 ALA A 615 1 8 HELIX 15 AB6 GLY A 636 GLY A 638 5 3 HELIX 16 AB7 SER A 736 THR A 738 5 3 SHEET 1 AA1 3 SER A 560 LYS A 562 0 SHEET 2 AA1 3 ILE A 565 MET A 571 -1 O THR A 567 N SER A 560 SHEET 3 AA1 3 SER A 627 SER A 631 -1 O CYS A 630 N ARG A 568 SHEET 1 AA2 2 MET A 640 ILE A 643 0 SHEET 2 AA2 2 ASN A 646 LYS A 649 -1 O PHE A 648 N ILE A 641 SHEET 1 AA3 3 LYS A 667 LYS A 673 0 SHEET 2 AA3 3 ASN A 654 LEU A 661 -1 N ASP A 658 O TYR A 670 SHEET 3 AA3 3 ARG A 691 LEU A 696 -1 O SER A 693 N VAL A 659 SHEET 1 AA4 5 ARG A 733 THR A 734 0 SHEET 2 AA4 5 THR A 721 ALA A 724 -1 N ILE A 722 O ARG A 733 SHEET 3 AA4 5 ILE A 710 LYS A 715 -1 N LYS A 715 O THR A 721 SHEET 4 AA4 5 MET A 701 VAL A 704 -1 N VAL A 702 O TYR A 711 SHEET 5 AA4 5 LEU A 740 LYS A 742 -1 O THR A 741 N THR A 703 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000