HEADER SIGNALING PROTEIN 05-MAR-24 9AVW TITLE STRUCTURE OF TAB2 NZF DOMAIN BOUND TO K6 / LYS6-LINKED DIUBIQUITIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: TGF-BETA-ACTIVATED KINASE 1 AND MAP3K7-BINDING PROTEIN 2; COMPND 7 CHAIN: C; COMPND 8 FRAGMENT: NZF DOMAIN, RESIDUES 663 TO 693; COMPND 9 SYNONYM: MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7-INTERACTING COMPND 10 PROTEIN 2,TAK1-BINDING PROTEIN 2,TAB-2,TGF-BETA-ACTIVATED KINASE 1- COMPND 11 BINDING PROTEIN 2; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: = SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UBB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: TAB2, KIAA0733, MAP3K7IP2; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS UBIQUITIN BINDING DOMAIN, DIUBIQUITIN, LYS6-LINKAGE, MITOPHAGY, KEYWDS 2 SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.A.MICHEL,S.SCUTTS,D.KOMANDER REVDAT 1 31-JUL-24 9AVW 0 JRNL AUTH M.A.MICHEL,S.SCUTTS,D.KOMANDER JRNL TITL STRUCTURE OF TAB2 NZF DOMAIN BOUND TO K6 / LYS6-LINKED JRNL TITL 2 DIUBIQUITIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 21100 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.770 REMARK 3 FREE R VALUE TEST SET COUNT : 1006 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.8310 - 3.3411 1.00 3092 159 0.1669 0.2067 REMARK 3 2 3.3411 - 2.6520 1.00 2919 149 0.1850 0.2041 REMARK 3 3 2.6520 - 2.3168 1.00 2896 129 0.1818 0.2059 REMARK 3 4 2.3168 - 2.1050 0.99 2826 155 0.1906 0.2071 REMARK 3 5 2.1050 - 1.9541 0.99 2834 136 0.2099 0.2392 REMARK 3 6 1.9541 - 1.8389 0.99 2813 142 0.2548 0.2571 REMARK 3 7 1.8389 - 1.7470 0.96 2714 136 0.3189 0.3803 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.400 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1455 REMARK 3 ANGLE : 0.880 1977 REMARK 3 CHIRALITY : 0.059 228 REMARK 3 PLANARITY : 0.005 252 REMARK 3 DIHEDRAL : 7.915 1185 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 61.7014 -5.0652 -5.0743 REMARK 3 T TENSOR REMARK 3 T11: 0.2066 T22: 0.1465 REMARK 3 T33: 0.2249 T12: -0.0093 REMARK 3 T13: -0.0292 T23: 0.0259 REMARK 3 L TENSOR REMARK 3 L11: 2.8306 L22: 5.4726 REMARK 3 L33: 6.6310 L12: 0.1370 REMARK 3 L13: -0.5689 L23: -3.3062 REMARK 3 S TENSOR REMARK 3 S11: -0.0608 S12: 0.1091 S13: 0.0224 REMARK 3 S21: 0.1288 S22: -0.2361 S23: -0.5691 REMARK 3 S31: -0.4013 S32: 0.5110 S33: 0.2484 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 17 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): 59.2186 -5.9236 -16.4383 REMARK 3 T TENSOR REMARK 3 T11: 0.2763 T22: 0.1277 REMARK 3 T33: 0.2187 T12: 0.0306 REMARK 3 T13: 0.0934 T23: -0.0055 REMARK 3 L TENSOR REMARK 3 L11: 2.7036 L22: 7.1401 REMARK 3 L33: 1.8900 L12: -2.3283 REMARK 3 L13: -0.1892 L23: -0.8469 REMARK 3 S TENSOR REMARK 3 S11: 0.1058 S12: 0.1575 S13: -0.0546 REMARK 3 S21: -0.5085 S22: -0.2697 S23: -0.5056 REMARK 3 S31: 0.2101 S32: 0.1382 S33: 0.1197 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 35 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.9486 -13.9857 -11.9491 REMARK 3 T TENSOR REMARK 3 T11: 0.2967 T22: -0.1621 REMARK 3 T33: 0.2430 T12: -0.0474 REMARK 3 T13: 0.1284 T23: -0.2085 REMARK 3 L TENSOR REMARK 3 L11: 1.4317 L22: 4.0899 REMARK 3 L33: 2.7918 L12: -2.2060 REMARK 3 L13: -1.9644 L23: 2.7272 REMARK 3 S TENSOR REMARK 3 S11: -0.3267 S12: 0.5155 S13: -0.6635 REMARK 3 S21: -0.2261 S22: -0.2239 S23: 0.2506 REMARK 3 S31: 0.5303 S32: -0.7015 S33: 0.1170 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 45 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.3138 -2.4056 -12.7352 REMARK 3 T TENSOR REMARK 3 T11: 0.2970 T22: 0.1266 REMARK 3 T33: 0.1401 T12: 0.0566 REMARK 3 T13: 0.0100 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 3.5743 L22: 2.4230 REMARK 3 L33: 6.7485 L12: 1.1182 REMARK 3 L13: -4.7571 L23: -0.7364 REMARK 3 S TENSOR REMARK 3 S11: 0.0900 S12: 0.6617 S13: 0.0635 REMARK 3 S21: -0.5980 S22: 0.1192 S23: 0.1169 REMARK 3 S31: 0.1433 S32: -0.8821 S33: 0.1049 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 57 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.6446 -1.8660 -8.6754 REMARK 3 T TENSOR REMARK 3 T11: 0.2030 T22: 0.0745 REMARK 3 T33: 0.1588 T12: 0.0166 REMARK 3 T13: 0.0288 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 2.4442 L22: 6.1010 REMARK 3 L33: 2.9071 L12: -0.4095 REMARK 3 L13: -0.7129 L23: -1.8303 REMARK 3 S TENSOR REMARK 3 S11: 0.1597 S12: 0.2020 S13: 0.1835 REMARK 3 S21: 0.1414 S22: -0.1036 S23: 0.0250 REMARK 3 S31: -0.4376 S32: 0.0958 S33: 0.0139 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.1409 -23.0791 -10.8513 REMARK 3 T TENSOR REMARK 3 T11: 0.1770 T22: 0.1721 REMARK 3 T33: 0.1663 T12: -0.0327 REMARK 3 T13: 0.0319 T23: -0.0244 REMARK 3 L TENSOR REMARK 3 L11: 5.5648 L22: 4.9856 REMARK 3 L33: 3.3519 L12: -1.7333 REMARK 3 L13: 1.3313 L23: -0.6437 REMARK 3 S TENSOR REMARK 3 S11: -0.1243 S12: 0.2499 S13: 0.0161 REMARK 3 S21: -0.2310 S22: 0.0567 S23: -0.2218 REMARK 3 S31: 0.2168 S32: 0.1262 S33: 0.0773 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 23 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.9173 -24.7501 -8.8722 REMARK 3 T TENSOR REMARK 3 T11: 0.1751 T22: 0.2282 REMARK 3 T33: 0.1692 T12: -0.0978 REMARK 3 T13: -0.0116 T23: -0.0776 REMARK 3 L TENSOR REMARK 3 L11: 4.1226 L22: 1.8023 REMARK 3 L33: 3.5965 L12: -0.4523 REMARK 3 L13: -0.6505 L23: -0.4393 REMARK 3 S TENSOR REMARK 3 S11: 0.0548 S12: -0.1151 S13: -0.3495 REMARK 3 S21: -0.0571 S22: 0.1566 S23: 0.0049 REMARK 3 S31: 0.2542 S32: -0.3635 S33: -0.0802 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 35 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.7190 -15.4401 -7.9248 REMARK 3 T TENSOR REMARK 3 T11: 0.1292 T22: 0.1501 REMARK 3 T33: 0.1920 T12: -0.0253 REMARK 3 T13: -0.0182 T23: -0.0319 REMARK 3 L TENSOR REMARK 3 L11: 3.1597 L22: 4.4178 REMARK 3 L33: 4.4361 L12: 0.6682 REMARK 3 L13: 0.1259 L23: -0.3969 REMARK 3 S TENSOR REMARK 3 S11: -0.0798 S12: -0.0114 S13: 0.3685 REMARK 3 S21: -0.1227 S22: -0.0320 S23: 0.1512 REMARK 3 S31: -0.1286 S32: -0.4722 S33: 0.0906 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 663 THROUGH 672 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.5054 -4.5462 4.3976 REMARK 3 T TENSOR REMARK 3 T11: 0.1436 T22: 0.0948 REMARK 3 T33: 0.0719 T12: -0.0061 REMARK 3 T13: 0.0256 T23: -0.0081 REMARK 3 L TENSOR REMARK 3 L11: 4.1582 L22: 5.2680 REMARK 3 L33: 2.8060 L12: -0.1754 REMARK 3 L13: 1.1989 L23: -0.6415 REMARK 3 S TENSOR REMARK 3 S11: 0.1328 S12: -0.3501 S13: 0.0213 REMARK 3 S21: 0.3610 S22: -0.0046 S23: 0.3602 REMARK 3 S31: -0.0323 S32: -0.1898 S33: -0.0894 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 673 THROUGH 682 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.7191 -8.1202 0.5210 REMARK 3 T TENSOR REMARK 3 T11: 0.0983 T22: 0.0614 REMARK 3 T33: 0.0965 T12: -0.0067 REMARK 3 T13: 0.0038 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 4.8093 L22: 1.5323 REMARK 3 L33: 1.4255 L12: 0.1664 REMARK 3 L13: -0.7055 L23: 0.1484 REMARK 3 S TENSOR REMARK 3 S11: -0.0638 S12: 0.0124 S13: 0.0221 REMARK 3 S21: 0.0050 S22: 0.0720 S23: 0.1258 REMARK 3 S31: 0.0829 S32: -0.0568 S33: 0.0102 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 683 THROUGH 693 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.6699 -12.4976 4.2636 REMARK 3 T TENSOR REMARK 3 T11: 0.1290 T22: 0.1941 REMARK 3 T33: 0.1121 T12: 0.0232 REMARK 3 T13: 0.0073 T23: 0.0459 REMARK 3 L TENSOR REMARK 3 L11: 3.7738 L22: 4.1957 REMARK 3 L33: 5.4497 L12: -0.1836 REMARK 3 L13: -0.3702 L23: 0.0575 REMARK 3 S TENSOR REMARK 3 S11: -0.1538 S12: -0.9018 S13: -0.8272 REMARK 3 S21: 0.3630 S22: 0.0793 S23: 0.1407 REMARK 3 S31: 0.1530 S32: -0.0431 S33: -0.0552 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9AVW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-MAR-24. REMARK 100 THE DEPOSITION ID IS D_1000282109. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JAN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96861 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21100 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.747 REMARK 200 RESOLUTION RANGE LOW (A) : 44.831 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 18.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 16.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.2 M AMMONIUM SULPHATE, 20% GLYCEROL, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.41333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.70667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 43.06000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 14.35333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 71.76667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 57.41333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 28.70667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 14.35333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 43.06000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 71.76667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 201 LIES ON A SPECIAL POSITION. REMARK 375 S SO4 B 101 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 355 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 805 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 73 REMARK 465 ARG A 74 REMARK 465 GLY A 75 REMARK 465 GLY A 76 REMARK 465 MET A 77 REMARK 465 GLN A 78 REMARK 465 ILE A 79 REMARK 465 PHE A 80 REMARK 465 VAL A 81 REMARK 465 LYS A 82 REMARK 465 THR A 83 REMARK 465 LEU A 84 REMARK 465 THR A 85 REMARK 465 GLY A 86 REMARK 465 LYS A 87 REMARK 465 THR A 88 REMARK 465 ILE A 89 REMARK 465 THR A 90 REMARK 465 LEU A 91 REMARK 465 GLU A 92 REMARK 465 VAL A 93 REMARK 465 GLU A 94 REMARK 465 PRO A 95 REMARK 465 SER A 96 REMARK 465 ASP A 97 REMARK 465 THR A 98 REMARK 465 ILE A 99 REMARK 465 GLU A 100 REMARK 465 ASN A 101 REMARK 465 VAL A 102 REMARK 465 LYS A 103 REMARK 465 ALA A 104 REMARK 465 LYS A 105 REMARK 465 ILE A 106 REMARK 465 GLN A 107 REMARK 465 ASP A 108 REMARK 465 LYS A 109 REMARK 465 GLU A 110 REMARK 465 GLY A 111 REMARK 465 ILE A 112 REMARK 465 PRO A 113 REMARK 465 PRO A 114 REMARK 465 ASP A 115 REMARK 465 GLN A 116 REMARK 465 GLN A 117 REMARK 465 ARG A 118 REMARK 465 LEU A 119 REMARK 465 ILE A 120 REMARK 465 PHE A 121 REMARK 465 ALA A 122 REMARK 465 GLY A 123 REMARK 465 LYS A 124 REMARK 465 GLN A 125 REMARK 465 LEU A 126 REMARK 465 GLU A 127 REMARK 465 ASP A 128 REMARK 465 GLY A 129 REMARK 465 ARG A 130 REMARK 465 THR A 131 REMARK 465 LEU A 132 REMARK 465 SER A 133 REMARK 465 ASP A 134 REMARK 465 TYR A 135 REMARK 465 ASN A 136 REMARK 465 ILE A 137 REMARK 465 GLN A 138 REMARK 465 LYS A 139 REMARK 465 GLU A 140 REMARK 465 SEP A 141 REMARK 465 THR A 142 REMARK 465 LEU A 143 REMARK 465 HIS A 144 REMARK 465 LEU A 145 REMARK 465 VAL A 146 REMARK 465 LEU A 147 REMARK 465 ARG A 148 REMARK 465 LEU A 149 REMARK 465 ARG A 150 REMARK 465 GLY A 151 REMARK 465 GLY A 152 REMARK 465 MET B -75 REMARK 465 GLN B -74 REMARK 465 ILE B -73 REMARK 465 PHE B -72 REMARK 465 VAL B -71 REMARK 465 LYS B -70 REMARK 465 THR B -69 REMARK 465 LEU B -68 REMARK 465 THR B -67 REMARK 465 GLY B -66 REMARK 465 LYS B -65 REMARK 465 THR B -64 REMARK 465 ILE B -63 REMARK 465 THR B -62 REMARK 465 LEU B -61 REMARK 465 GLU B -60 REMARK 465 VAL B -59 REMARK 465 GLU B -58 REMARK 465 PRO B -57 REMARK 465 SER B -56 REMARK 465 ASP B -55 REMARK 465 THR B -54 REMARK 465 ILE B -53 REMARK 465 GLU B -52 REMARK 465 ASN B -51 REMARK 465 VAL B -50 REMARK 465 LYS B -49 REMARK 465 ALA B -48 REMARK 465 LYS B -47 REMARK 465 ILE B -46 REMARK 465 GLN B -45 REMARK 465 ASP B -44 REMARK 465 LYS B -43 REMARK 465 GLU B -42 REMARK 465 GLY B -41 REMARK 465 ILE B -40 REMARK 465 PRO B -39 REMARK 465 PRO B -38 REMARK 465 ASP B -37 REMARK 465 GLN B -36 REMARK 465 GLN B -35 REMARK 465 ARG B -34 REMARK 465 LEU B -33 REMARK 465 ILE B -32 REMARK 465 PHE B -31 REMARK 465 ALA B -30 REMARK 465 GLY B -29 REMARK 465 LYS B -28 REMARK 465 GLN B -27 REMARK 465 LEU B -26 REMARK 465 GLU B -25 REMARK 465 ASP B -24 REMARK 465 GLY B -23 REMARK 465 ARG B -22 REMARK 465 THR B -21 REMARK 465 LEU B -20 REMARK 465 SER B -19 REMARK 465 ASP B -18 REMARK 465 TYR B -17 REMARK 465 ASN B -16 REMARK 465 ILE B -15 REMARK 465 GLN B -14 REMARK 465 LYS B -13 REMARK 465 GLU B -12 REMARK 465 SER B -11 REMARK 465 THR B -10 REMARK 465 LEU B -9 REMARK 465 HIS B -8 REMARK 465 LEU B -7 REMARK 465 VAL B -6 REMARK 465 LEU B -5 REMARK 465 ARG B -4 REMARK 465 LEU B -3 REMARK 465 ARG B -2 REMARK 465 GLY B -1 REMARK 465 GLY B 0 REMARK 465 ARG B 74 REMARK 465 GLY B 75 REMARK 465 GLY B 76 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 32 CG OD1 OD2 REMARK 470 LYS A 63 CG CD CE NZ REMARK 470 GLU B 24 CD OE1 OE2 REMARK 470 LYS B 63 CG CD CE NZ REMARK 470 LEU B 73 CG CD1 CD2 REMARK 470 ASP C 663 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 313 O HOH A 342 2.12 REMARK 500 O3 SO4 A 201 O HOH A 301 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR C 674 -2.99 78.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 355 DISTANCE = 6.34 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 670 SG REMARK 620 2 CYS C 673 SG 114.3 REMARK 620 3 CYS C 684 SG 104.9 101.8 REMARK 620 4 CYS C 687 SG 99.3 123.2 112.3 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9AVT RELATED DB: PDB REMARK 900 SAME PUBLICATION DBREF 9AVW A 1 152 UNP P0CG47 UBB_HUMAN 1 152 DBREF 9AVW B -75 76 UNP P0CG47 UBB_HUMAN 1 152 DBREF 9AVW C 663 693 UNP Q9NYJ8 TAB2_HUMAN 663 693 SEQRES 1 A 152 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 A 152 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 A 152 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 A 152 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 A 152 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 A 152 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY MET GLN SEQRES 7 A 152 ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE THR LEU SEQRES 8 A 152 GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL LYS ALA SEQRES 9 A 152 LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP GLN GLN SEQRES 10 A 152 ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP GLY ARG SEQRES 11 A 152 THR LEU SER ASP TYR ASN ILE GLN LYS GLU SEP THR LEU SEQRES 12 A 152 HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 B 152 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 B 152 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 B 152 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 B 152 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 B 152 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 B 152 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY MET GLN SEQRES 7 B 152 ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE THR LEU SEQRES 8 B 152 GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL LYS ALA SEQRES 9 B 152 LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP GLN GLN SEQRES 10 B 152 ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP GLY ARG SEQRES 11 B 152 THR LEU SER ASP TYR ASN ILE GLN LYS GLU SEP THR LEU SEQRES 12 B 152 HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 C 31 ASP GLU GLY ALA GLN TRP ASN CYS THR ALA CYS THR PHE SEQRES 2 C 31 LEU ASN HIS PRO ALA LEU ILE ARG CYS GLU GLN CYS GLU SEQRES 3 C 31 MET PRO ARG HIS PHE MODRES 9AVW SEP B 65 SER MODIFIED RESIDUE HET SEP B 65 10 HET SO4 A 201 5 HET SO4 A 202 5 HET SO4 B 101 5 HET SO4 B 102 5 HET SO4 B 103 5 HET ZN C 701 1 HET SO4 C 702 5 HETNAM SEP PHOSPHOSERINE HETNAM SO4 SULFATE ION HETNAM ZN ZINC ION HETSYN SEP PHOSPHONOSERINE FORMUL 2 SEP C3 H8 N O6 P FORMUL 4 SO4 6(O4 S 2-) FORMUL 9 ZN ZN 2+ FORMUL 11 HOH *121(H2 O) HELIX 1 AA1 THR A 22 GLY A 35 1 14 HELIX 2 AA2 PRO A 37 ASP A 39 5 3 HELIX 3 AA3 LEU A 56 ASN A 60 5 5 HELIX 4 AA4 THR B 22 GLY B 35 1 14 HELIX 5 AA5 PRO B 37 ASP B 39 5 3 HELIX 6 AA6 LEU B 56 ASN B 60 5 5 SHEET 1 AA1 5 THR A 12 GLU A 16 0 SHEET 2 AA1 5 GLN A 2 LYS A 6 -1 N VAL A 5 O ILE A 13 SHEET 3 AA1 5 THR A 66 LEU A 71 1 O LEU A 67 N LYS A 6 SHEET 4 AA1 5 GLN A 41 PHE A 45 -1 N ARG A 42 O VAL A 70 SHEET 5 AA1 5 LYS A 48 GLN A 49 -1 O LYS A 48 N PHE A 45 SHEET 1 AA2 5 THR B 12 GLU B 16 0 SHEET 2 AA2 5 GLN B 2 LYS B 6 -1 N ILE B 3 O LEU B 15 SHEET 3 AA2 5 THR B 66 LEU B 71 1 O LEU B 67 N LYS B 6 SHEET 4 AA2 5 GLN B 41 PHE B 45 -1 N ARG B 42 O VAL B 70 SHEET 5 AA2 5 LYS B 48 GLN B 49 -1 O LYS B 48 N PHE B 45 SHEET 1 AA3 2 TRP C 668 ASN C 669 0 SHEET 2 AA3 2 LEU C 676 ASN C 677 -1 O ASN C 677 N TRP C 668 LINK C GLU B 64 N SEP B 65 1555 1555 1.33 LINK C SEP B 65 N THR B 66 1555 1555 1.33 LINK SG CYS C 670 ZN ZN C 701 1555 1555 2.35 LINK SG CYS C 673 ZN ZN C 701 1555 1555 2.28 LINK SG CYS C 684 ZN ZN C 701 1555 1555 2.35 LINK SG CYS C 687 ZN ZN C 701 1555 1555 2.33 CRYST1 89.663 89.663 86.120 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011153 0.006439 0.000000 0.00000 SCALE2 0.000000 0.012878 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011612 0.00000