HEADER DE NOVO PROTEIN 11-MAR-24 9AZI TITLE NMR SOLUTION STRUCTURE OF CELL-PERMEANT MINIATURE PROTEIN ZF5.3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DESIGNED ZINC FINGER PROTEIN 5.3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ZINC FINGER PROTEIN 100 HOMOLOG,ZFP-100; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ZNF473, KIAA1141, ZFP100; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: GOLD KEYWDS MINI-PROTEIN, CELL-PERMEANT, ZINC FINGER, ENDOSOMAL ESCAPE, DE NOVO KEYWDS 2 PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.A.GIUDICE,M.KELLY,A.SCHEPARTZ REVDAT 1 01-MAY-24 9AZI 0 JRNL AUTH J.A.GIUDICE,D.BRAUER,A.VAZQUEZ MALDONADO,M.ZOLTEK, JRNL AUTH 2 A.SCHEPARTZ JRNL TITL STRUCTURAL AND MECHANISTIC BASIS FOR EFFICIENT ENDOSOMAL JRNL TITL 2 ESCAPE BY DESIGNED MINI-PROTEINS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH 3.5 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9AZI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAR-24. REMARK 100 THE DEPOSITION ID IS D_1000280286. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 800 UM [U-13C; U-15N] ZF5.3, 20 REMARK 210 MM TRIS, 100 MM SODIUM CHLORIDE, REMARK 210 2 MM TCEP, 1.6 MM ZNCL2, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-13C NOESY; 3D 1H-15N REMARK 210 NOESY; 2D 1H-13C HSQC; 2D 1H-13C REMARK 210 HSQC AROMATIC; 2D 1H-15N HSQC; REMARK 210 3D HCCH-TOCSY; 1D 1H REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE NEO REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPNMR ANALYSIS ASSIGN 3.2.0, REMARK 210 TOPSPIN 4.3.0, X-PLOR NIH, ARTINA REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 6 -45.46 -138.44 REMARK 500 2 ARG A 25 104.58 67.33 REMARK 500 7 CYS A 6 -34.94 -132.36 REMARK 500 7 ARG A 25 -170.03 51.76 REMARK 500 8 ARG A 25 76.58 63.50 REMARK 500 9 ARG A 25 -168.38 64.37 REMARK 500 9 ALA A 26 -61.96 -98.01 REMARK 500 11 ARG A 24 -37.32 -133.48 REMARK 500 15 CYS A 6 -33.58 -134.58 REMARK 500 15 ALA A 26 80.01 63.84 REMARK 500 16 CYS A 6 -37.38 -138.58 REMARK 500 17 CYS A 6 -38.39 -132.20 REMARK 500 17 ARG A 25 -90.64 66.37 REMARK 500 19 ARG A 25 170.87 69.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 3 SG REMARK 620 2 CYS A 6 SG 104.8 REMARK 620 3 HIS A 19 NE2 106.7 112.2 REMARK 620 4 HIS A 23 NE2 106.0 112.5 113.8 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 31151 RELATED DB: BMRB REMARK 900 NMR SOLUTION STRUCTURE OF CELL-PERMEANT MINIATURE PROTEIN ZF5.3 DBREF 9AZI A 1 27 UNP Q8WTR7 ZN473_HUMAN 814 840 SEQADV 9AZI ARG A 14 UNP Q8WTR7 ALA 827 CONFLICT SEQADV 9AZI ARG A 18 UNP Q8WTR7 GLN 831 CONFLICT SEQADV 9AZI ARG A 24 UNP Q8WTR7 THR 837 CONFLICT SEQADV 9AZI ARG A 25 UNP Q8WTR7 GLN 838 CONFLICT SEQADV 9AZI ALA A 26 UNP Q8WTR7 GLU 839 CONFLICT SEQRES 1 A 27 TYR SER CYS ASN VAL CYS GLY LYS ALA PHE VAL LEU SER SEQRES 2 A 27 ARG HIS LEU ASN ARG HIS LEU ARG VAL HIS ARG ARG ALA SEQRES 3 A 27 THR HET ZN A 401 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 AA1 LEU A 12 ARG A 24 1 13 LINK SG CYS A 3 ZN ZN A 401 1555 1555 2.31 LINK SG CYS A 6 ZN ZN A 401 1555 1555 2.35 LINK NE2 HIS A 19 ZN ZN A 401 1555 1555 2.35 LINK NE2 HIS A 23 ZN ZN A 401 1555 1555 2.35 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1