HEADER PROTEIN TRANSPORT 13-MAR-24 9B1R TITLE FUNCTIONAL IMPLICATION OF THE HOMOTRIMERIC MULTIDOMAIN VACUOLAR TITLE 2 SORTING RECEPTOR 1 FROM ARABIDOPSIS THALIANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: VACUOLAR-SORTING RECEPTOR 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ATVSR1,BP80-LIKE PROTEIN B,ATBP80B,EPIDERMAL GROWTH FACTOR COMPND 5 RECEPTOR-LIKE PROTEIN 1,ATELP,ATELP1,SPOT 3 PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: VSR1, BP80B, ELP, ELP1, AT3G52850, F8J2.20; SOURCE 6 EXPRESSION_SYSTEM: DROSOPHILA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 32281 KEYWDS VSR1, GOLGI, TRANSPORTER, RECEPTOR, ER, EGF, PA, TRX, PROTEIN KEYWDS 2 TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR H.PARK,B.YOUN,D.J.PARK,S.V.PUTHANVEETTIL,C.KANG REVDAT 1 15-MAY-24 9B1R 0 JRNL AUTH H.PARK,B.YOUN,D.J.PARK,S.V.PUTHANVEETTIL,C.KANG JRNL TITL FUNCTIONAL IMPLICATION OF THE HOMOTRIMERIC MULTIDOMAIN JRNL TITL 2 VACUOLAR SORTING RECEPTOR 1 (VSR1) FROM ARABIDOPSIS JRNL TITL 3 THALIANA. JRNL REF SCI REP V. 14 9622 2024 JRNL REFN ESSN 2045-2322 JRNL PMID 38671060 JRNL DOI 10.1038/S41598-024-57975-2 REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 24159 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.940 REMARK 3 FREE R VALUE TEST SET COUNT : 2402 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.3900 - 8.9900 0.98 1307 137 0.1771 0.2531 REMARK 3 2 8.9600 - 7.1400 1.00 1335 144 0.1740 0.1955 REMARK 3 3 7.1300 - 6.2300 1.00 1334 149 0.2050 0.1897 REMARK 3 4 6.2300 - 5.6700 1.00 1332 149 0.1850 0.2293 REMARK 3 5 5.6600 - 5.2600 1.00 1314 150 0.1845 0.2266 REMARK 3 6 5.2600 - 4.9500 1.00 1322 144 0.1655 0.1789 REMARK 3 7 4.9500 - 4.7000 1.00 1353 137 0.1692 0.1775 REMARK 3 8 4.7000 - 4.5000 1.00 1348 146 0.1469 0.1895 REMARK 3 9 4.5000 - 4.3300 1.00 1331 144 0.1722 0.1993 REMARK 3 10 4.3200 - 4.1800 1.00 1334 152 0.1576 0.2065 REMARK 3 11 4.1700 - 4.0500 1.00 1304 138 0.1687 0.2246 REMARK 3 12 4.0500 - 3.9300 1.00 1348 158 0.1720 0.1980 REMARK 3 13 3.9300 - 3.8300 0.99 1294 145 0.1885 0.2373 REMARK 3 14 3.8200 - 3.7400 0.97 1286 148 0.2036 0.2594 REMARK 3 15 3.7300 - 3.6500 0.93 1242 139 0.2001 0.2495 REMARK 3 16 3.6500 - 3.5700 0.84 1092 114 0.2342 0.2333 REMARK 3 17 3.5700 - 3.5000 0.67 881 108 0.2464 0.2730 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.336 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.587 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 67.05 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3411 REMARK 3 ANGLE : 0.870 4619 REMARK 3 CHIRALITY : 0.053 511 REMARK 3 PLANARITY : 0.008 597 REMARK 3 DIHEDRAL : 6.630 468 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 21 THROUGH 175 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.1748 -26.3939 -47.5102 REMARK 3 T TENSOR REMARK 3 T11: 0.7066 T22: 0.6582 REMARK 3 T33: 0.4255 T12: 0.1970 REMARK 3 T13: -0.0498 T23: 0.0736 REMARK 3 L TENSOR REMARK 3 L11: 1.6653 L22: 2.6162 REMARK 3 L33: 4.5423 L12: -0.5079 REMARK 3 L13: 0.0824 L23: 0.2215 REMARK 3 S TENSOR REMARK 3 S11: 0.3358 S12: 0.6270 S13: 0.0599 REMARK 3 S21: -0.8926 S22: -0.5441 S23: 0.0656 REMARK 3 S31: -0.4941 S32: 0.1763 S33: 0.1757 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 176 THROUGH 465 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.1717 10.4050 -23.8635 REMARK 3 T TENSOR REMARK 3 T11: 0.3562 T22: 0.4390 REMARK 3 T33: 0.3297 T12: -0.0636 REMARK 3 T13: -0.0093 T23: 0.0293 REMARK 3 L TENSOR REMARK 3 L11: 1.7588 L22: 2.1871 REMARK 3 L33: 1.8104 L12: -0.5620 REMARK 3 L13: 0.5641 L23: -0.9417 REMARK 3 S TENSOR REMARK 3 S11: -0.0079 S12: -0.1058 S13: 0.0838 REMARK 3 S21: 0.1481 S22: -0.0519 S23: -0.0935 REMARK 3 S31: -0.2388 S32: 0.0237 S33: 0.0493 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9B1R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAR-24. REMARK 100 THE DEPOSITION ID IS D_1000281443. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAY-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0108 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24159 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.500 REMARK 200 RESOLUTION RANGE LOW (A) : 36.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.7200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.63 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG, TRIS, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 72.77150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.77150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 72.77150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.77150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 72.77150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 72.77150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 72.77150 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 72.77150 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 72.77150 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 72.77150 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 72.77150 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 72.77150 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 72.77150 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 72.77150 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 72.77150 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 72.77150 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 72.77150 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 72.77150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 58010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 120 REMARK 465 LYS A 121 REMARK 465 ALA A 122 REMARK 465 GLU A 123 REMARK 465 PRO A 124 REMARK 465 LEU A 125 REMARK 465 ILE A 126 REMARK 465 THR A 127 REMARK 465 MET A 128 REMARK 465 ASP A 129 REMARK 465 THR A 130 REMARK 465 PRO A 131 REMARK 465 GLU A 132 REMARK 465 GLU A 133 REMARK 465 ASP A 134 REMARK 465 LYS A 135 REMARK 465 SER A 136 REMARK 465 ASP A 137 REMARK 465 LEU A 466 REMARK 465 HIS A 467 REMARK 465 CYS A 468 REMARK 465 GLY A 469 REMARK 465 ILE A 470 REMARK 465 ASN A 471 REMARK 465 ASN A 472 REMARK 465 GLY A 473 REMARK 465 GLY A 474 REMARK 465 CYS A 475 REMARK 465 TRP A 476 REMARK 465 ARG A 477 REMARK 465 GLU A 478 REMARK 465 SER A 479 REMARK 465 ARG A 480 REMARK 465 GLY A 481 REMARK 465 GLY A 482 REMARK 465 PHE A 483 REMARK 465 THR A 484 REMARK 465 TYR A 485 REMARK 465 SER A 486 REMARK 465 ALA A 487 REMARK 465 CYS A 488 REMARK 465 VAL A 489 REMARK 465 ASP A 490 REMARK 465 ASP A 491 REMARK 465 HIS A 492 REMARK 465 SER A 493 REMARK 465 LYS A 494 REMARK 465 ASP A 495 REMARK 465 CYS A 496 REMARK 465 LYS A 497 REMARK 465 CYS A 498 REMARK 465 PRO A 499 REMARK 465 LEU A 500 REMARK 465 GLY A 501 REMARK 465 PHE A 502 REMARK 465 LYS A 503 REMARK 465 GLY A 504 REMARK 465 ASP A 505 REMARK 465 GLY A 506 REMARK 465 VAL A 507 REMARK 465 LYS A 508 REMARK 465 ASN A 509 REMARK 465 CYS A 510 REMARK 465 GLU A 511 REMARK 465 ASP A 512 REMARK 465 VAL A 513 REMARK 465 ASP A 514 REMARK 465 GLU A 515 REMARK 465 CYS A 516 REMARK 465 LYS A 517 REMARK 465 GLU A 518 REMARK 465 LYS A 519 REMARK 465 THR A 520 REMARK 465 VAL A 521 REMARK 465 CYS A 522 REMARK 465 GLN A 523 REMARK 465 CYS A 524 REMARK 465 PRO A 525 REMARK 465 GLU A 526 REMARK 465 CYS A 527 REMARK 465 LYS A 528 REMARK 465 CYS A 529 REMARK 465 LYS A 530 REMARK 465 ASN A 531 REMARK 465 THR A 532 REMARK 465 TRP A 533 REMARK 465 GLY A 534 REMARK 465 SER A 535 REMARK 465 TYR A 536 REMARK 465 GLU A 537 REMARK 465 CYS A 538 REMARK 465 SER A 539 REMARK 465 CYS A 540 REMARK 465 SER A 541 REMARK 465 ASN A 542 REMARK 465 GLY A 543 REMARK 465 LEU A 544 REMARK 465 LEU A 545 REMARK 465 TYR A 546 REMARK 465 MET A 547 REMARK 465 ARG A 548 REMARK 465 GLU A 549 REMARK 465 HIS A 550 REMARK 465 ASP A 551 REMARK 465 THR A 552 REMARK 465 CYS A 553 REMARK 465 ILE A 554 REMARK 465 GLY A 555 REMARK 465 SER A 556 REMARK 465 GLY A 557 REMARK 465 LYS A 558 REMARK 465 VAL A 559 REMARK 465 GLY A 560 REMARK 465 THR A 561 REMARK 465 THR A 562 REMARK 465 LYS A 563 REMARK 465 LEU A 564 REMARK 465 SER A 565 REMARK 465 TRP A 566 REMARK 465 SER A 567 REMARK 465 PHE A 568 REMARK 465 LEU A 569 REMARK 465 TRP A 570 REMARK 465 ILE A 571 REMARK 465 LEU A 572 REMARK 465 ILE A 573 REMARK 465 ILE A 574 REMARK 465 GLY A 575 REMARK 465 VAL A 576 REMARK 465 GLY A 577 REMARK 465 VAL A 578 REMARK 465 ALA A 579 REMARK 465 GLY A 580 REMARK 465 LEU A 581 REMARK 465 SER A 582 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 83 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 97 -17.51 64.78 REMARK 500 ASP A 139 -51.30 -156.38 REMARK 500 PRO A 261 33.44 -86.27 REMARK 500 ASP A 264 73.47 21.87 REMARK 500 TRP A 295 -9.99 -59.11 REMARK 500 PRO A 341 8.86 -63.59 REMARK 500 ASP A 344 67.49 -60.29 REMARK 500 ASP A 425 87.02 -159.55 REMARK 500 THR A 458 -31.91 -137.50 REMARK 500 SER A 463 -133.78 -94.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 32 PRO A 33 120.68 REMARK 500 REMARK 500 REMARK: NULL DBREF 9B1R A 21 582 UNP P93026 VSR1_ARATH 21 582 SEQRES 1 A 562 PHE VAL VAL GLU LYS ASN ASN LEU LYS VAL THR SER PRO SEQRES 2 A 562 ASP SER ILE LYS GLY ILE TYR GLU CYS ALA ILE GLY ASN SEQRES 3 A 562 PHE GLY VAL PRO GLN TYR GLY GLY THR LEU VAL GLY THR SEQRES 4 A 562 VAL VAL TYR PRO LYS SER ASN GLN LYS ALA CYS LYS SER SEQRES 5 A 562 TYR SER ASP PHE ASP ILE SER PHE LYS SER LYS PRO GLY SEQRES 6 A 562 ARG LEU PRO THR PHE VAL LEU ILE ASP ARG GLY ASP CYS SEQRES 7 A 562 TYR PHE THR LEU LYS ALA TRP ILE ALA GLN GLN ALA GLY SEQRES 8 A 562 ALA ALA ALA ILE LEU VAL ALA ASP SER LYS ALA GLU PRO SEQRES 9 A 562 LEU ILE THR MET ASP THR PRO GLU GLU ASP LYS SER ASP SEQRES 10 A 562 ALA ASP TYR LEU GLN ASN ILE THR ILE PRO SER ALA LEU SEQRES 11 A 562 ILE THR LYS THR LEU GLY ASP SER ILE LYS SER ALA LEU SEQRES 12 A 562 SER GLY GLY ASP MET VAL ASN MET LYS LEU ASP TRP THR SEQRES 13 A 562 GLU SER VAL PRO HIS PRO ASP GLU ARG VAL GLU TYR GLU SEQRES 14 A 562 LEU TRP THR ASN SER ASN ASP GLU CYS GLY LYS LYS CYS SEQRES 15 A 562 ASP THR GLN ILE GLU PHE LEU LYS ASN PHE LYS GLY ALA SEQRES 16 A 562 ALA GLN ILE LEU GLU LYS GLY GLY HIS THR GLN PHE THR SEQRES 17 A 562 PRO HIS TYR ILE THR TRP TYR CYS PRO GLU ALA PHE THR SEQRES 18 A 562 LEU SER LYS GLN CYS LYS SER GLN CYS ILE ASN HIS GLY SEQRES 19 A 562 ARG TYR CYS ALA PRO ASP PRO GLU GLN ASP PHE THR LYS SEQRES 20 A 562 GLY TYR ASP GLY LYS ASP VAL VAL VAL GLN ASN LEU ARG SEQRES 21 A 562 GLN ALA CYS VAL TYR ARG VAL MET ASN ASP THR GLY LYS SEQRES 22 A 562 PRO TRP VAL TRP TRP ASP TYR VAL THR ASP PHE ALA ILE SEQRES 23 A 562 ARG CYS PRO MET LYS GLU LYS LYS TYR THR LYS GLU CYS SEQRES 24 A 562 ALA ASP GLY ILE ILE LYS SER LEU GLY ILE ASP LEU LYS SEQRES 25 A 562 LYS VAL ASP LYS CYS ILE GLY ASP PRO GLU ALA ASP VAL SEQRES 26 A 562 GLU ASN PRO VAL LEU LYS ALA GLU GLN GLU SER GLN ILE SEQRES 27 A 562 GLY LYS GLY SER ARG GLY ASP VAL THR ILE LEU PRO THR SEQRES 28 A 562 LEU VAL VAL ASN ASN ARG GLN TYR ARG GLY LYS LEU GLU SEQRES 29 A 562 LYS GLY ALA VAL LEU LYS ALA MET CYS SER GLY PHE GLN SEQRES 30 A 562 GLU SER THR GLU PRO ALA ILE CYS LEU THR GLU ASP LEU SEQRES 31 A 562 GLU THR ASN GLU CYS LEU GLU ASN ASN GLY GLY CYS TRP SEQRES 32 A 562 GLN ASP LYS ALA ALA ASN ILE THR ALA CYS ARG ASP THR SEQRES 33 A 562 PHE ARG GLY ARG LEU CYS GLU CYS PRO THR VAL GLN GLY SEQRES 34 A 562 VAL LYS PHE VAL GLY ASP GLY TYR THR HIS CYS LYS ALA SEQRES 35 A 562 SER GLY ALA LEU HIS CYS GLY ILE ASN ASN GLY GLY CYS SEQRES 36 A 562 TRP ARG GLU SER ARG GLY GLY PHE THR TYR SER ALA CYS SEQRES 37 A 562 VAL ASP ASP HIS SER LYS ASP CYS LYS CYS PRO LEU GLY SEQRES 38 A 562 PHE LYS GLY ASP GLY VAL LYS ASN CYS GLU ASP VAL ASP SEQRES 39 A 562 GLU CYS LYS GLU LYS THR VAL CYS GLN CYS PRO GLU CYS SEQRES 40 A 562 LYS CYS LYS ASN THR TRP GLY SER TYR GLU CYS SER CYS SEQRES 41 A 562 SER ASN GLY LEU LEU TYR MET ARG GLU HIS ASP THR CYS SEQRES 42 A 562 ILE GLY SER GLY LYS VAL GLY THR THR LYS LEU SER TRP SEQRES 43 A 562 SER PHE LEU TRP ILE LEU ILE ILE GLY VAL GLY VAL ALA SEQRES 44 A 562 GLY LEU SER HET NAG B 1 14 HET NAG B 2 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 2(C8 H15 N O6) HELIX 1 AA1 PRO A 33 LYS A 37 5 5 HELIX 2 AA2 SER A 72 ASP A 77 5 6 HELIX 3 AA3 TYR A 99 GLY A 111 1 13 HELIX 4 AA4 ASP A 139 ILE A 144 5 6 HELIX 5 AA5 THR A 152 GLY A 166 1 15 HELIX 6 AA6 HIS A 181 ARG A 185 5 5 HELIX 7 AA7 GLY A 199 GLY A 222 1 24 HELIX 8 AA8 PRO A 237 THR A 241 5 5 HELIX 9 AA9 SER A 243 GLN A 249 1 7 HELIX 10 AB1 ASP A 264 GLY A 268 5 5 HELIX 11 AB2 ASP A 270 THR A 291 1 22 HELIX 12 AB3 TRP A 295 CYS A 308 1 14 HELIX 13 AB4 THR A 316 GLY A 328 1 13 HELIX 14 AB5 ASP A 330 GLY A 339 1 10 HELIX 15 AB6 ASN A 347 ILE A 358 1 12 HELIX 16 AB7 GLU A 384 SER A 394 1 11 HELIX 17 AB8 PRO A 402 LEU A 406 5 5 HELIX 18 AB9 ASN A 413 CYS A 422 5 10 HELIX 19 AC1 LYS A 426 ASN A 429 5 4 SHEET 1 AA1 8 GLY A 38 TYR A 40 0 SHEET 2 AA1 8 LEU A 28 VAL A 30 -1 N VAL A 30 O GLY A 38 SHEET 3 AA1 8 ASN A 170 TRP A 175 -1 O LYS A 172 N LYS A 29 SHEET 4 AA1 8 GLY A 54 VAL A 61 -1 N GLY A 58 O MET A 171 SHEET 5 AA1 8 THR A 89 ASP A 94 1 O PHE A 90 N THR A 59 SHEET 6 AA1 8 ALA A 114 ALA A 118 1 O LEU A 116 N VAL A 91 SHEET 7 AA1 8 SER A 148 LEU A 150 1 O ALA A 149 N VAL A 117 SHEET 8 AA1 8 ALA A 43 ILE A 44 -1 N ALA A 43 O LEU A 150 SHEET 1 AA2 4 THR A 225 HIS A 230 0 SHEET 2 AA2 4 VAL A 186 TRP A 191 1 N LEU A 190 O HIS A 230 SHEET 3 AA2 4 THR A 371 VAL A 374 -1 O THR A 371 N TRP A 191 SHEET 4 AA2 4 GLN A 378 TYR A 379 -1 O TYR A 379 N LEU A 372 SHEET 1 AA3 2 CYS A 250 ILE A 251 0 SHEET 2 AA3 2 TYR A 256 CYS A 257 -1 O TYR A 256 N ILE A 251 SHEET 1 AA4 2 GLN A 424 ASP A 425 0 SHEET 2 AA4 2 ILE A 430 THR A 431 -1 O ILE A 430 N ASP A 425 SHEET 1 AA5 2 CYS A 433 THR A 436 0 SHEET 2 AA5 2 GLY A 439 CYS A 442 -1 O LEU A 441 N ARG A 434 SHEET 1 AA6 2 THR A 446 VAL A 447 0 SHEET 2 AA6 2 VAL A 450 LYS A 451 -1 O VAL A 450 N VAL A 447 SHEET 1 AA7 2 VAL A 453 GLY A 454 0 SHEET 2 AA7 2 CYS A 460 LYS A 461 -1 O LYS A 461 N VAL A 453 SSBOND 1 CYS A 70 CYS A 98 1555 1555 2.05 SSBOND 2 CYS A 198 CYS A 202 1555 1555 2.05 SSBOND 3 CYS A 236 CYS A 246 1555 1555 2.02 SSBOND 4 CYS A 250 CYS A 257 1555 1555 2.03 SSBOND 5 CYS A 283 CYS A 337 1555 1555 2.04 SSBOND 6 CYS A 308 CYS A 319 1555 1555 2.04 SSBOND 7 CYS A 393 CYS A 405 1555 1555 2.04 SSBOND 8 CYS A 415 CYS A 433 1555 1555 2.04 SSBOND 9 CYS A 422 CYS A 442 1555 1555 2.03 SSBOND 10 CYS A 444 CYS A 460 1555 1555 2.04 LINK ND2 ASN A 289 C1 NAG B 1 1555 1555 1.45 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 CISPEP 1 LEU A 369 PRO A 370 0 1.78 CRYST1 145.543 145.543 145.543 90.00 90.00 90.00 P 21 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006871 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006871 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006871 0.00000