HEADER OXIDOREDUCTASE 15-MAR-24 9B2G TITLE CRYSTAL STRUCTURE OF SHORT CHAIN DEHYDROGENASE REDUCTASE 9 (SHORT TITLE 2 CHAIN DEHYDROGENASE REDUCTASE 9C4) IN COMPLEX WITH NADH COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 9; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 3-ALPHA HYDROXYSTEROID DEHYDROGENASE,3-ALPHA-HSD,RETINOL COMPND 5 DEHYDROGENASE,SHORT-CHAIN DEHYDROGENASE/REDUCTASE RETSDR8; COMPND 6 EC: 1.1.1.209,1.1.1.53,1.1.1.105; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: DHRS9; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET19B KEYWDS SHORT-CHAIN DEHYDROGENASE REDUCTASE, OXYLIPINS, POLYUNSATURATED FATTY KEYWDS 2 ACIDS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.PAKHOMOVA,O.V.BELYAEVA,W.E.BOEGLIN,N.Y.KEDISHVILI,A.R.BRASH, AUTHOR 2 M.E.NEWCOMER,K.M.POPOV REVDAT 2 17-DEC-25 9B2G 1 JRNL REVDAT 1 19-MAR-25 9B2G 0 JRNL AUTH S.E.WIRTH,S.PAKHOMOVA,O.V.BELYAEVA,W.E.BOEGLIN,A.R.BRASH, JRNL AUTH 2 M.E.NEWCOMER,N.Y.KEDISHVILI,K.M.POPOV JRNL TITL THE EFFECTS OF NATURALLY OCCURRING MUTATIONS ON JRNL TITL 2 FUNCTIONALITY OF OXYLIPIN METABOLIZING DEHYDROGENASE JRNL TITL 3 REDUCTASE NINE. JRNL REF J.BIOL.CHEM. V. 301 10704 2025 JRNL REFN ESSN 1083-351X JRNL PMID 40945732 JRNL DOI 10.1016/J.JBC.2025.110704 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 49599 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2680 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3398 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.3860 REMARK 3 BIN FREE R VALUE SET COUNT : 205 REMARK 3 BIN FREE R VALUE : 0.3660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4599 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 88 REMARK 3 SOLVENT ATOMS : 32 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 74.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.28000 REMARK 3 B22 (A**2) : -9.23000 REMARK 3 B33 (A**2) : -1.79000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 4.20000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.162 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.151 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.218 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.458 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4789 ; 0.007 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4674 ; 0.001 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6500 ; 1.426 ; 1.639 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10784 ; 1.211 ; 1.585 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 595 ; 6.903 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 200 ;34.886 ;22.500 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 833 ;16.814 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;17.253 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 636 ; 0.060 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5303 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1027 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2386 ; 2.817 ; 6.281 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2385 ; 2.814 ; 6.281 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2979 ; 4.166 ; 9.427 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2980 ; 4.167 ; 9.427 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2403 ; 3.239 ; 6.712 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2404 ; 3.239 ; 6.712 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3522 ; 5.151 ; 9.902 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5072 ; 6.609 ;72.836 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5071 ; 6.610 ;72.837 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A B 9222 0.07 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 21 A 304 REMARK 3 ORIGIN FOR THE GROUP (A): 13.202 -1.827 31.628 REMARK 3 T TENSOR REMARK 3 T11: 0.0846 T22: 0.0184 REMARK 3 T33: 0.0171 T12: 0.0092 REMARK 3 T13: 0.0053 T23: 0.0166 REMARK 3 L TENSOR REMARK 3 L11: 2.0806 L22: 2.0458 REMARK 3 L33: 1.8337 L12: -0.8863 REMARK 3 L13: -1.4415 L23: 0.7018 REMARK 3 S TENSOR REMARK 3 S11: -0.1653 S12: -0.1874 S13: -0.1700 REMARK 3 S21: 0.3336 S22: 0.0859 S23: 0.0621 REMARK 3 S31: 0.2855 S32: 0.0960 S33: 0.0795 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 22 B 304 REMARK 3 ORIGIN FOR THE GROUP (A): 30.500 5.382 12.745 REMARK 3 T TENSOR REMARK 3 T11: 0.0413 T22: 0.0256 REMARK 3 T33: 0.1151 T12: -0.0144 REMARK 3 T13: 0.0227 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 1.8088 L22: 2.3090 REMARK 3 L33: 1.8013 L12: -1.1128 REMARK 3 L13: -1.5238 L23: 0.8732 REMARK 3 S TENSOR REMARK 3 S11: 0.0716 S12: -0.1144 S13: 0.2888 REMARK 3 S21: -0.1357 S22: 0.0911 S23: -0.4129 REMARK 3 S31: -0.1716 S32: 0.1688 S33: -0.1628 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 9B2G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAR-24. REMARK 100 THE DEPOSITION ID IS D_1000282484. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-NOV-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : CRYOGENICALLY COOLED SINGLE REMARK 200 CRYSTAL SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52809 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% JEFFAMINE SD-2001, 0.1 M NA REMARK 280 CITRATE PH 5.4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 71.55800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.10250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 71.55800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.10250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 PHE A 3 REMARK 465 TRP A 4 REMARK 465 LEU A 5 REMARK 465 LEU A 6 REMARK 465 ALA A 7 REMARK 465 LEU A 8 REMARK 465 LEU A 9 REMARK 465 PHE A 10 REMARK 465 LEU A 11 REMARK 465 CYS A 12 REMARK 465 ALA A 13 REMARK 465 PHE A 14 REMARK 465 LEU A 15 REMARK 465 TRP A 16 REMARK 465 ASN A 17 REMARK 465 TYR A 18 REMARK 465 LYS A 19 REMARK 465 GLY A 20 REMARK 465 MET B 1 REMARK 465 LEU B 2 REMARK 465 PHE B 3 REMARK 465 TRP B 4 REMARK 465 LEU B 5 REMARK 465 LEU B 6 REMARK 465 ALA B 7 REMARK 465 LEU B 8 REMARK 465 LEU B 9 REMARK 465 PHE B 10 REMARK 465 LEU B 11 REMARK 465 CYS B 12 REMARK 465 ALA B 13 REMARK 465 PHE B 14 REMARK 465 LEU B 15 REMARK 465 TRP B 16 REMARK 465 ASN B 17 REMARK 465 TYR B 18 REMARK 465 LYS B 19 REMARK 465 GLY B 20 REMARK 465 GLN B 21 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 21 CG CD OE1 NE2 REMARK 470 LEU A 22 CG CD1 CD2 REMARK 470 THR A 254 OG1 CG2 REMARK 470 LYS A 310 CG CD CE NZ REMARK 470 LEU B 22 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 138 -65.19 -107.05 REMARK 500 SER A 163 -118.99 -94.54 REMARK 500 SER A 164 148.60 168.00 REMARK 500 LYS A 210 95.78 -67.86 REMARK 500 THR A 211 -161.77 -127.98 REMARK 500 SER A 256 47.20 -78.97 REMARK 500 PHE A 290 -68.43 -121.72 REMARK 500 ALA A 318 45.17 -87.30 REMARK 500 LEU B 138 -65.82 -107.41 REMARK 500 SER B 163 -118.25 -94.12 REMARK 500 SER B 164 148.59 167.52 REMARK 500 SER B 256 47.06 -82.73 REMARK 500 PHE B 290 -69.70 -121.05 REMARK 500 GLN B 309 79.79 -104.93 REMARK 500 ALA B 318 48.66 -84.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9B2F RELATED DB: PDB REMARK 900 9B2F CONTAINS THE SAME PROTEIN COMPLEXED WITH NAD+ DBREF 9B2G A 1 319 UNP Q58NB6 DHRS9_MOUSE 1 319 DBREF 9B2G B 1 319 UNP Q58NB6 DHRS9_MOUSE 1 319 SEQRES 1 A 319 MET LEU PHE TRP LEU LEU ALA LEU LEU PHE LEU CYS ALA SEQRES 2 A 319 PHE LEU TRP ASN TYR LYS GLY GLN LEU LYS ILE ALA ASP SEQRES 3 A 319 ILE ALA ASP LYS TYR VAL PHE ILE THR GLY CYS ASP THR SEQRES 4 A 319 GLY PHE GLY ASN LEU ALA ALA ARG THR PHE ASP LYS LYS SEQRES 5 A 319 GLY PHE ARG VAL ILE ALA ALA CYS LEU THR GLU SER GLY SEQRES 6 A 319 SER ALA ALA LEU LYS ALA LYS THR SER GLU ARG LEU HIS SEQRES 7 A 319 THR VAL LEU LEU ASP VAL THR ASP PRO GLU ASN VAL LYS SEQRES 8 A 319 LYS THR ALA GLN TRP VAL LYS SER HIS VAL GLY GLU LYS SEQRES 9 A 319 GLY LEU TRP GLY LEU ILE ASN ASN ALA GLY VAL LEU GLY SEQRES 10 A 319 VAL LEU ALA PRO THR ASP TRP LEU THR VAL ASP ASP TYR SEQRES 11 A 319 ARG GLU PRO ILE GLU VAL ASN LEU PHE GLY LEU ILE ASN SEQRES 12 A 319 VAL THR LEU ASN MET LEU PRO LEU VAL LYS LYS ALA ARG SEQRES 13 A 319 GLY ARG VAL ILE ASN VAL SER SER ILE GLY GLY ARG LEU SEQRES 14 A 319 ALA PHE GLY GLY GLY GLY TYR THR PRO SER LYS TYR ALA SEQRES 15 A 319 VAL GLU GLY PHE ASN ASP SER LEU ARG ARG ASP MET LYS SEQRES 16 A 319 ALA PHE GLY VAL HIS VAL SER CYS ILE GLU PRO GLY LEU SEQRES 17 A 319 PHE LYS THR GLU LEU ALA ASP PRO ILE LYS THR THR GLU SEQRES 18 A 319 LYS LYS LEU ALA ILE TRP LYS HIS LEU SER PRO ASP ILE SEQRES 19 A 319 LYS GLN GLN TYR GLY GLU GLY TYR ILE GLU LYS SER LEU SEQRES 20 A 319 HIS ARG LEU LYS SER ASN THR SER SER VAL ASN LEU ASP SEQRES 21 A 319 LEU SER LEU VAL VAL GLY CYS MET ASP HIS ALA LEU THR SEQRES 22 A 319 SER LEU PHE PRO LYS THR ARG TYR ILE ALA GLY LYS ASP SEQRES 23 A 319 ALA LYS THR PHE TRP ILE PRO LEU SER HIS MET PRO ALA SEQRES 24 A 319 VAL LEU GLN ASP PHE LEU LEU LEU LYS GLN LYS VAL GLU SEQRES 25 A 319 LEU ALA ASN PRO LYS ALA VAL SEQRES 1 B 319 MET LEU PHE TRP LEU LEU ALA LEU LEU PHE LEU CYS ALA SEQRES 2 B 319 PHE LEU TRP ASN TYR LYS GLY GLN LEU LYS ILE ALA ASP SEQRES 3 B 319 ILE ALA ASP LYS TYR VAL PHE ILE THR GLY CYS ASP THR SEQRES 4 B 319 GLY PHE GLY ASN LEU ALA ALA ARG THR PHE ASP LYS LYS SEQRES 5 B 319 GLY PHE ARG VAL ILE ALA ALA CYS LEU THR GLU SER GLY SEQRES 6 B 319 SER ALA ALA LEU LYS ALA LYS THR SER GLU ARG LEU HIS SEQRES 7 B 319 THR VAL LEU LEU ASP VAL THR ASP PRO GLU ASN VAL LYS SEQRES 8 B 319 LYS THR ALA GLN TRP VAL LYS SER HIS VAL GLY GLU LYS SEQRES 9 B 319 GLY LEU TRP GLY LEU ILE ASN ASN ALA GLY VAL LEU GLY SEQRES 10 B 319 VAL LEU ALA PRO THR ASP TRP LEU THR VAL ASP ASP TYR SEQRES 11 B 319 ARG GLU PRO ILE GLU VAL ASN LEU PHE GLY LEU ILE ASN SEQRES 12 B 319 VAL THR LEU ASN MET LEU PRO LEU VAL LYS LYS ALA ARG SEQRES 13 B 319 GLY ARG VAL ILE ASN VAL SER SER ILE GLY GLY ARG LEU SEQRES 14 B 319 ALA PHE GLY GLY GLY GLY TYR THR PRO SER LYS TYR ALA SEQRES 15 B 319 VAL GLU GLY PHE ASN ASP SER LEU ARG ARG ASP MET LYS SEQRES 16 B 319 ALA PHE GLY VAL HIS VAL SER CYS ILE GLU PRO GLY LEU SEQRES 17 B 319 PHE LYS THR GLU LEU ALA ASP PRO ILE LYS THR THR GLU SEQRES 18 B 319 LYS LYS LEU ALA ILE TRP LYS HIS LEU SER PRO ASP ILE SEQRES 19 B 319 LYS GLN GLN TYR GLY GLU GLY TYR ILE GLU LYS SER LEU SEQRES 20 B 319 HIS ARG LEU LYS SER ASN THR SER SER VAL ASN LEU ASP SEQRES 21 B 319 LEU SER LEU VAL VAL GLY CYS MET ASP HIS ALA LEU THR SEQRES 22 B 319 SER LEU PHE PRO LYS THR ARG TYR ILE ALA GLY LYS ASP SEQRES 23 B 319 ALA LYS THR PHE TRP ILE PRO LEU SER HIS MET PRO ALA SEQRES 24 B 319 VAL LEU GLN ASP PHE LEU LEU LEU LYS GLN LYS VAL GLU SEQRES 25 B 319 LEU ALA ASN PRO LYS ALA VAL HET NAI A 401 44 HET NAI B 401 44 HETNAM NAI 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE HETSYN NAI NADH FORMUL 3 NAI 2(C21 H29 N7 O14 P2) FORMUL 5 HOH *32(H2 O) HELIX 1 AA1 ASP A 26 ASP A 29 5 4 HELIX 2 AA2 THR A 39 GLY A 53 1 15 HELIX 3 AA3 THR A 62 THR A 73 1 12 HELIX 4 AA4 ASP A 86 GLY A 102 1 17 HELIX 5 AA5 GLU A 103 GLY A 105 5 3 HELIX 6 AA6 PRO A 121 LEU A 125 5 5 HELIX 7 AA7 THR A 126 ASP A 129 5 4 HELIX 8 AA8 TYR A 130 LEU A 138 1 9 HELIX 9 AA9 LEU A 138 ARG A 156 1 19 HELIX 10 AB1 SER A 164 ARG A 168 5 5 HELIX 11 AB2 GLY A 175 LYS A 195 1 21 HELIX 12 AB3 ALA A 196 GLY A 198 5 3 HELIX 13 AB4 ASP A 215 LYS A 228 1 14 HELIX 14 AB5 SER A 231 GLY A 239 1 9 HELIX 15 AB6 GLY A 241 LYS A 251 1 11 HELIX 16 AB7 SER A 252 THR A 254 5 3 HELIX 17 AB8 LEU A 261 SER A 274 1 14 HELIX 18 AB9 GLY A 284 PHE A 290 1 7 HELIX 19 AC1 PHE A 290 HIS A 296 1 7 HELIX 20 AC2 PRO A 298 LYS A 308 1 11 HELIX 21 AC3 ASP B 26 ASP B 29 5 4 HELIX 22 AC4 THR B 39 GLY B 53 1 15 HELIX 23 AC5 THR B 62 THR B 73 1 12 HELIX 24 AC6 ASP B 86 GLY B 102 1 17 HELIX 25 AC7 GLU B 103 GLY B 105 5 3 HELIX 26 AC8 PRO B 121 LEU B 125 5 5 HELIX 27 AC9 THR B 126 ASP B 129 5 4 HELIX 28 AD1 TYR B 130 LEU B 138 1 9 HELIX 29 AD2 LEU B 138 ARG B 156 1 19 HELIX 30 AD3 SER B 164 ARG B 168 5 5 HELIX 31 AD4 GLY B 175 LYS B 195 1 21 HELIX 32 AD5 ALA B 196 GLY B 198 5 3 HELIX 33 AD6 ASP B 215 LYS B 228 1 14 HELIX 34 AD7 SER B 231 GLY B 239 1 9 HELIX 35 AD8 GLY B 241 LYS B 251 1 11 HELIX 36 AD9 SER B 252 THR B 254 5 3 HELIX 37 AE1 LEU B 261 SER B 274 1 14 HELIX 38 AE2 GLY B 284 PHE B 290 1 7 HELIX 39 AE3 PHE B 290 HIS B 296 1 7 HELIX 40 AE4 PRO B 298 LYS B 308 1 11 SHEET 1 AA1 7 HIS A 78 LEU A 81 0 SHEET 2 AA1 7 ARG A 55 CYS A 60 1 N VAL A 56 O HIS A 78 SHEET 3 AA1 7 TYR A 31 ILE A 34 1 N ILE A 34 O ALA A 59 SHEET 4 AA1 7 GLY A 108 ASN A 111 1 O ILE A 110 N PHE A 33 SHEET 5 AA1 7 ARG A 158 VAL A 162 1 O ILE A 160 N LEU A 109 SHEET 6 AA1 7 HIS A 200 PRO A 206 1 O ILE A 204 N ASN A 161 SHEET 7 AA1 7 ARG A 280 ALA A 283 1 O TYR A 281 N GLU A 205 SHEET 1 AA2 7 HIS B 78 LEU B 81 0 SHEET 2 AA2 7 ARG B 55 CYS B 60 1 N VAL B 56 O HIS B 78 SHEET 3 AA2 7 TYR B 31 ILE B 34 1 N ILE B 34 O ALA B 59 SHEET 4 AA2 7 GLY B 108 ASN B 111 1 O ILE B 110 N PHE B 33 SHEET 5 AA2 7 ARG B 158 VAL B 162 1 O ILE B 160 N LEU B 109 SHEET 6 AA2 7 HIS B 200 PRO B 206 1 O ILE B 204 N ASN B 161 SHEET 7 AA2 7 ARG B 280 ALA B 283 1 O TYR B 281 N GLU B 205 CRYST1 143.116 74.205 102.771 90.00 133.12 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006987 0.000000 0.006544 0.00000 SCALE2 0.000000 0.013476 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013332 0.00000 CONECT 4602 4603 4604 4605 4624 CONECT 4603 4602 CONECT 4604 4602 CONECT 4605 4602 4606 CONECT 4606 4605 4607 CONECT 4607 4606 4608 4609 CONECT 4608 4607 4613 CONECT 4609 4607 4610 4611 CONECT 4610 4609 CONECT 4611 4609 4612 4613 CONECT 4612 4611 CONECT 4613 4608 4611 4614 CONECT 4614 4613 4615 4623 CONECT 4615 4614 4616 CONECT 4616 4615 4617 CONECT 4617 4616 4618 4623 CONECT 4618 4617 4619 4620 CONECT 4619 4618 CONECT 4620 4618 4621 CONECT 4621 4620 4622 CONECT 4622 4621 4623 CONECT 4623 4614 4617 4622 CONECT 4624 4602 4625 CONECT 4625 4624 4626 4627 4628 CONECT 4626 4625 CONECT 4627 4625 CONECT 4628 4625 4629 CONECT 4629 4628 4630 CONECT 4630 4629 4631 4632 CONECT 4631 4630 4636 CONECT 4632 4630 4633 4634 CONECT 4633 4632 CONECT 4634 4632 4635 4636 CONECT 4635 4634 CONECT 4636 4631 4634 4637 CONECT 4637 4636 4638 4645 CONECT 4638 4637 4639 CONECT 4639 4638 4640 4643 CONECT 4640 4639 4641 4642 CONECT 4641 4640 CONECT 4642 4640 CONECT 4643 4639 4644 CONECT 4644 4643 4645 CONECT 4645 4637 4644 CONECT 4646 4647 4648 4649 4668 CONECT 4647 4646 CONECT 4648 4646 CONECT 4649 4646 4650 CONECT 4650 4649 4651 CONECT 4651 4650 4652 4653 CONECT 4652 4651 4657 CONECT 4653 4651 4654 4655 CONECT 4654 4653 CONECT 4655 4653 4656 4657 CONECT 4656 4655 CONECT 4657 4652 4655 4658 CONECT 4658 4657 4659 4667 CONECT 4659 4658 4660 CONECT 4660 4659 4661 CONECT 4661 4660 4662 4667 CONECT 4662 4661 4663 4664 CONECT 4663 4662 CONECT 4664 4662 4665 CONECT 4665 4664 4666 CONECT 4666 4665 4667 CONECT 4667 4658 4661 4666 CONECT 4668 4646 4669 CONECT 4669 4668 4670 4671 4672 CONECT 4670 4669 CONECT 4671 4669 CONECT 4672 4669 4673 CONECT 4673 4672 4674 CONECT 4674 4673 4675 4676 CONECT 4675 4674 4680 CONECT 4676 4674 4677 4678 CONECT 4677 4676 CONECT 4678 4676 4679 4680 CONECT 4679 4678 CONECT 4680 4675 4678 4681 CONECT 4681 4680 4682 4689 CONECT 4682 4681 4683 CONECT 4683 4682 4684 4687 CONECT 4684 4683 4685 4686 CONECT 4685 4684 CONECT 4686 4684 CONECT 4687 4683 4688 CONECT 4688 4687 4689 CONECT 4689 4681 4688 MASTER 374 0 2 40 14 0 0 6 4719 2 88 50 END