HEADER HYDROLASE 15-MAR-24 9B2K TITLE SPCAS9 WITH DUAL-GUIDE RNA IN OPEN CONFORMATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (5'- COMPND 3 R(P*GP*UP*UP*UP*UP*AP*GP*AP*GP*CP*UP*AP*UP*GP*CP*UP*GP*U)-3'); COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RNA (56-MER); COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: CRISPR-ASSOCIATED ENDONUCLEASE CAS9/CSN1; COMPND 12 CHAIN: P; COMPND 13 SYNONYM: SPCAS9,SPYCAS9; COMPND 14 EC: 3.1.-.-; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PYOGENES; SOURCE 4 ORGANISM_TAXID: 1314; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PYOGENES; SOURCE 8 ORGANISM_TAXID: 1314; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PYOGENES; SOURCE 11 ORGANISM_TAXID: 1314; SOURCE 12 GENE: CAS9, CSN1, SPY_1046; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CAS9, RNA, HYDROLASE EXPDTA ELECTRON MICROSCOPY AUTHOR S.KOROLEV,K.GAGNON REVDAT 1 26-MAR-25 9B2K 0 JRNL AUTH S.KOROLEV,K.GAGNON JRNL TITL SPCAS9 WITH DUAL-GUIDE RNA AND TARGET DNA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, EPU, CRYOSPARC, COOT, REMARK 3 CRYOSPARC, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.670 REMARK 3 NUMBER OF PARTICLES : 164524 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9B2K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAR-24. REMARK 100 THE DEPOSITION ID IS D_1000282532. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : CRISPR-ASSOCIATED ENDONUCLEASE REMARK 245 CAS9 COMPLEX WITH DOUBLE REMARK 245 STRANDED GUIDE RNA AND TARGET REMARK 245 DNA REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 1.40 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 11890 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON IV (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2400.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5137.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 U A 1 REMARK 465 A A 2 REMARK 465 C A 3 REMARK 465 C A 4 REMARK 465 A A 5 REMARK 465 G A 6 REMARK 465 C A 7 REMARK 465 A A 8 REMARK 465 A A 9 REMARK 465 A A 10 REMARK 465 A A 11 REMARK 465 C A 12 REMARK 465 A A 13 REMARK 465 C A 14 REMARK 465 U A 15 REMARK 465 C A 16 REMARK 465 C A 17 REMARK 465 G A 18 REMARK 465 A A 19 REMARK 465 U A 20 REMARK 465 U A 39 REMARK 465 U A 40 REMARK 465 U A 41 REMARK 465 G A 42 REMARK 465 A B 1 REMARK 465 C B 27 REMARK 465 U B 28 REMARK 465 A B 29 REMARK 465 G B 30 REMARK 465 U B 31 REMARK 465 C B 32 REMARK 465 C B 33 REMARK 465 G B 34 REMARK 465 U B 35 REMARK 465 U B 36 REMARK 465 A B 37 REMARK 465 U B 38 REMARK 465 C B 39 REMARK 465 MET P 1 REMARK 465 ASP P 2 REMARK 465 ILE P 448 REMARK 465 PRO P 449 REMARK 465 TYR P 450 REMARK 465 TYR P 451 REMARK 465 VAL P 452 REMARK 465 GLY P 453 REMARK 465 PRO P 454 REMARK 465 LEU P 455 REMARK 465 ALA P 456 REMARK 465 ARG P 457 REMARK 465 GLY P 458 REMARK 465 ASN P 459 REMARK 465 SER P 460 REMARK 465 ARG P 461 REMARK 465 PHE P 462 REMARK 465 ALA P 463 REMARK 465 TRP P 464 REMARK 465 MET P 465 REMARK 465 THR P 466 REMARK 465 ARG P 467 REMARK 465 LYS P 468 REMARK 465 SER P 469 REMARK 465 GLU P 470 REMARK 465 GLU P 471 REMARK 465 THR P 472 REMARK 465 ILE P 473 REMARK 465 THR P 474 REMARK 465 PRO P 475 REMARK 465 TRP P 476 REMARK 465 ASN P 477 REMARK 465 PHE P 478 REMARK 465 GLU P 479 REMARK 465 GLU P 480 REMARK 465 VAL P 481 REMARK 465 VAL P 482 REMARK 465 ASP P 483 REMARK 465 LYS P 484 REMARK 465 GLY P 485 REMARK 465 ALA P 486 REMARK 465 SER P 487 REMARK 465 ALA P 488 REMARK 465 GLN P 489 REMARK 465 SER P 490 REMARK 465 PHE P 491 REMARK 465 ILE P 492 REMARK 465 GLU P 493 REMARK 465 ARG P 494 REMARK 465 MET P 495 REMARK 465 THR P 496 REMARK 465 ASN P 497 REMARK 465 PHE P 498 REMARK 465 ASP P 499 REMARK 465 LYS P 500 REMARK 465 ASN P 501 REMARK 465 LEU P 502 REMARK 465 PRO P 503 REMARK 465 ASN P 504 REMARK 465 GLU P 505 REMARK 465 LYS P 506 REMARK 465 VAL P 507 REMARK 465 LEU P 508 REMARK 465 PRO P 509 REMARK 465 LYS P 510 REMARK 465 HIS P 511 REMARK 465 SER P 512 REMARK 465 LEU P 513 REMARK 465 LEU P 514 REMARK 465 TYR P 515 REMARK 465 GLU P 516 REMARK 465 TYR P 517 REMARK 465 PHE P 518 REMARK 465 THR P 519 REMARK 465 VAL P 520 REMARK 465 TYR P 521 REMARK 465 ASN P 522 REMARK 465 GLU P 523 REMARK 465 LEU P 524 REMARK 465 THR P 525 REMARK 465 LYS P 526 REMARK 465 VAL P 527 REMARK 465 LYS P 528 REMARK 465 TYR P 529 REMARK 465 VAL P 530 REMARK 465 THR P 531 REMARK 465 GLU P 532 REMARK 465 GLY P 533 REMARK 465 MET P 534 REMARK 465 ARG P 535 REMARK 465 LYS P 536 REMARK 465 PRO P 537 REMARK 465 ALA P 538 REMARK 465 PHE P 539 REMARK 465 LEU P 540 REMARK 465 SER P 541 REMARK 465 GLY P 542 REMARK 465 GLU P 543 REMARK 465 GLN P 544 REMARK 465 LYS P 545 REMARK 465 LYS P 546 REMARK 465 ALA P 547 REMARK 465 ILE P 548 REMARK 465 VAL P 549 REMARK 465 ASP P 550 REMARK 465 LEU P 551 REMARK 465 LEU P 552 REMARK 465 PHE P 553 REMARK 465 LYS P 554 REMARK 465 THR P 555 REMARK 465 ASN P 556 REMARK 465 ARG P 557 REMARK 465 LYS P 558 REMARK 465 VAL P 559 REMARK 465 THR P 560 REMARK 465 VAL P 561 REMARK 465 LYS P 562 REMARK 465 GLN P 563 REMARK 465 LEU P 564 REMARK 465 LYS P 565 REMARK 465 GLU P 566 REMARK 465 ASP P 567 REMARK 465 TYR P 568 REMARK 465 PHE P 569 REMARK 465 LYS P 570 REMARK 465 LYS P 571 REMARK 465 ILE P 572 REMARK 465 GLU P 573 REMARK 465 CYS P 574 REMARK 465 PHE P 575 REMARK 465 ASP P 576 REMARK 465 SER P 577 REMARK 465 VAL P 578 REMARK 465 GLU P 579 REMARK 465 ILE P 580 REMARK 465 SER P 581 REMARK 465 GLY P 582 REMARK 465 VAL P 583 REMARK 465 GLU P 584 REMARK 465 ASP P 585 REMARK 465 ARG P 586 REMARK 465 PHE P 587 REMARK 465 ASN P 588 REMARK 465 ALA P 589 REMARK 465 SER P 590 REMARK 465 LEU P 591 REMARK 465 GLY P 592 REMARK 465 THR P 593 REMARK 465 TYR P 594 REMARK 465 HIS P 595 REMARK 465 ASP P 596 REMARK 465 LEU P 597 REMARK 465 LEU P 598 REMARK 465 LYS P 599 REMARK 465 ILE P 600 REMARK 465 ILE P 601 REMARK 465 LYS P 602 REMARK 465 ASP P 603 REMARK 465 LYS P 604 REMARK 465 ASP P 605 REMARK 465 PHE P 606 REMARK 465 LEU P 607 REMARK 465 ASP P 608 REMARK 465 ASN P 609 REMARK 465 GLU P 610 REMARK 465 GLU P 611 REMARK 465 ASN P 612 REMARK 465 GLU P 613 REMARK 465 ASP P 614 REMARK 465 ILE P 615 REMARK 465 LEU P 616 REMARK 465 GLU P 617 REMARK 465 ASP P 618 REMARK 465 ILE P 619 REMARK 465 VAL P 620 REMARK 465 LEU P 621 REMARK 465 THR P 622 REMARK 465 LEU P 623 REMARK 465 THR P 624 REMARK 465 LEU P 625 REMARK 465 PHE P 626 REMARK 465 GLU P 627 REMARK 465 ASP P 628 REMARK 465 ARG P 629 REMARK 465 GLU P 630 REMARK 465 MET P 631 REMARK 465 ILE P 632 REMARK 465 GLU P 633 REMARK 465 GLU P 634 REMARK 465 ARG P 635 REMARK 465 LEU P 636 REMARK 465 LYS P 637 REMARK 465 THR P 638 REMARK 465 TYR P 639 REMARK 465 ALA P 640 REMARK 465 HIS P 641 REMARK 465 LEU P 642 REMARK 465 PHE P 643 REMARK 465 ASP P 644 REMARK 465 ASP P 645 REMARK 465 LYS P 646 REMARK 465 VAL P 647 REMARK 465 MET P 648 REMARK 465 LYS P 649 REMARK 465 GLN P 650 REMARK 465 LEU P 651 REMARK 465 LYS P 652 REMARK 465 ARG P 653 REMARK 465 ARG P 654 REMARK 465 ARG P 655 REMARK 465 TYR P 656 REMARK 465 THR P 657 REMARK 465 GLY P 658 REMARK 465 TRP P 659 REMARK 465 GLY P 660 REMARK 465 ARG P 661 REMARK 465 LEU P 662 REMARK 465 SER P 663 REMARK 465 ARG P 664 REMARK 465 LYS P 665 REMARK 465 LEU P 666 REMARK 465 ILE P 667 REMARK 465 ASN P 668 REMARK 465 GLY P 669 REMARK 465 ILE P 670 REMARK 465 ARG P 671 REMARK 465 ASP P 672 REMARK 465 LYS P 673 REMARK 465 GLN P 674 REMARK 465 SER P 675 REMARK 465 GLY P 676 REMARK 465 LYS P 677 REMARK 465 THR P 678 REMARK 465 ILE P 679 REMARK 465 LEU P 680 REMARK 465 ASP P 681 REMARK 465 PHE P 682 REMARK 465 LEU P 683 REMARK 465 LYS P 684 REMARK 465 SER P 685 REMARK 465 ASP P 686 REMARK 465 GLY P 687 REMARK 465 PHE P 688 REMARK 465 ALA P 689 REMARK 465 ASN P 690 REMARK 465 ARG P 691 REMARK 465 ASN P 692 REMARK 465 PHE P 693 REMARK 465 MET P 694 REMARK 465 GLN P 695 REMARK 465 LEU P 696 REMARK 465 ILE P 697 REMARK 465 HIS P 698 REMARK 465 ASP P 699 REMARK 465 ASP P 700 REMARK 465 SER P 701 REMARK 465 LEU P 702 REMARK 465 THR P 703 REMARK 465 PHE P 704 REMARK 465 LYS P 705 REMARK 465 GLU P 706 REMARK 465 ASP P 707 REMARK 465 ILE P 708 REMARK 465 GLN P 709 REMARK 465 LYS P 710 REMARK 465 ALA P 711 REMARK 465 GLN P 712 REMARK 465 VAL P 713 REMARK 465 SER P 714 REMARK 465 GLY P 715 REMARK 465 GLN P 716 REMARK 465 GLY P 717 REMARK 465 GLY P 1104 REMARK 465 PHE P 1105 REMARK 465 SER P 1106 REMARK 465 LYS P 1107 REMARK 465 GLU P 1108 REMARK 465 SER P 1109 REMARK 465 ILE P 1110 REMARK 465 LEU P 1111 REMARK 465 PRO P 1112 REMARK 465 LYS P 1113 REMARK 465 ARG P 1114 REMARK 465 ASN P 1115 REMARK 465 SER P 1116 REMARK 465 ASP P 1117 REMARK 465 LYS P 1118 REMARK 465 LEU P 1119 REMARK 465 ILE P 1120 REMARK 465 ALA P 1121 REMARK 465 ARG P 1122 REMARK 465 LYS P 1123 REMARK 465 LYS P 1124 REMARK 465 ASP P 1125 REMARK 465 TRP P 1126 REMARK 465 ASP P 1127 REMARK 465 PRO P 1128 REMARK 465 LYS P 1129 REMARK 465 LYS P 1130 REMARK 465 TYR P 1131 REMARK 465 GLY P 1132 REMARK 465 GLY P 1133 REMARK 465 PHE P 1134 REMARK 465 ASP P 1135 REMARK 465 GLY P 1367 REMARK 465 ASP P 1368 REMARK 465 PRO P 1369 REMARK 465 LYS P 1370 REMARK 465 LYS P 1371 REMARK 465 LYS P 1372 REMARK 465 ARG P 1373 REMARK 465 LYS P 1374 REMARK 465 VAL P 1375 REMARK 465 MET P 1376 REMARK 465 ASP P 1377 REMARK 465 LYS P 1378 REMARK 465 HIS P 1379 REMARK 465 HIS P 1380 REMARK 465 HIS P 1381 REMARK 465 HIS P 1382 REMARK 465 HIS P 1383 REMARK 465 HIS P 1384 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU P 1271 OG SER P 1274 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 C B 7 N1 - C2 - O2 ANGL. DEV. = 3.9 DEGREES REMARK 500 C B 7 N3 - C2 - O2 ANGL. DEV. = -4.5 DEGREES REMARK 500 U B 9 C2 - N1 - C1' ANGL. DEV. = 8.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS P 30 -168.11 -128.42 REMARK 500 ALA P 68 -39.18 -147.53 REMARK 500 ARG P 69 -32.72 -38.46 REMARK 500 VAL P 93 -64.83 -136.01 REMARK 500 ASP P 95 -111.09 -122.23 REMARK 500 SER P 96 45.59 -70.67 REMARK 500 LYS P 112 10.88 57.67 REMARK 500 ASP P 180 -160.81 57.23 REMARK 500 VAL P 181 -50.20 -126.66 REMARK 500 ASN P 199 71.49 58.64 REMARK 500 GLN P 228 -167.67 -121.53 REMARK 500 LEU P 229 70.53 56.98 REMARK 500 SER P 245 44.68 -84.79 REMARK 500 ALA P 287 49.04 -82.55 REMARK 500 LEU P 306 56.12 -103.78 REMARK 500 ASN P 309 50.03 165.96 REMARK 500 THR P 313 50.90 -90.20 REMARK 500 GLN P 341 -61.13 -92.88 REMARK 500 GLN P 354 -6.05 69.36 REMARK 500 ASP P 406 52.00 -115.44 REMARK 500 SER P 409 96.24 -52.07 REMARK 500 ILE P 410 110.48 -170.33 REMARK 500 MET P 751 30.14 -89.75 REMARK 500 THR P 770 -0.02 66.08 REMARK 500 GLN P 794 49.42 -91.95 REMARK 500 ASN P 818 -8.96 68.93 REMARK 500 ASP P 944 -169.31 -124.20 REMARK 500 ASN P1177 79.71 -150.20 REMARK 500 GLU P1189 64.87 61.77 REMARK 500 TYR P1201 61.37 61.01 REMARK 500 HIS P1262 56.89 -90.03 REMARK 500 LEU P1282 66.19 60.12 REMARK 500 SER P1351 -169.51 -79.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG P 63 -21.54 REMARK 500 ILE P 305 10.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8FTZ RELATED DB: PDB REMARK 900 ALTERNATIVE OPEN CONFORMATION REMARK 900 RELATED ID: EMD-44111 RELATED DB: EMDB REMARK 900 SPCAS9 WITH DUAL-GUIDE RNA IN OPEN CONFORMATION DBREF 9B2K A 1 42 PDB 9B2K 9B2K 1 42 DBREF1 9B2K B 1 70 GB LS483330.1 DBREF2 9B2K B 1403816625 1070243 1070312 DBREF 9B2K P 1 1368 UNP Q99ZW2 CAS9_STRP1 1 1368 SEQADV 9B2K PRO P 1369 UNP Q99ZW2 EXPRESSION TAG SEQADV 9B2K LYS P 1370 UNP Q99ZW2 EXPRESSION TAG SEQADV 9B2K LYS P 1371 UNP Q99ZW2 EXPRESSION TAG SEQADV 9B2K LYS P 1372 UNP Q99ZW2 EXPRESSION TAG SEQADV 9B2K ARG P 1373 UNP Q99ZW2 EXPRESSION TAG SEQADV 9B2K LYS P 1374 UNP Q99ZW2 EXPRESSION TAG SEQADV 9B2K VAL P 1375 UNP Q99ZW2 EXPRESSION TAG SEQADV 9B2K MET P 1376 UNP Q99ZW2 EXPRESSION TAG SEQADV 9B2K ASP P 1377 UNP Q99ZW2 EXPRESSION TAG SEQADV 9B2K LYS P 1378 UNP Q99ZW2 EXPRESSION TAG SEQADV 9B2K HIS P 1379 UNP Q99ZW2 EXPRESSION TAG SEQADV 9B2K HIS P 1380 UNP Q99ZW2 EXPRESSION TAG SEQADV 9B2K HIS P 1381 UNP Q99ZW2 EXPRESSION TAG SEQADV 9B2K HIS P 1382 UNP Q99ZW2 EXPRESSION TAG SEQADV 9B2K HIS P 1383 UNP Q99ZW2 EXPRESSION TAG SEQADV 9B2K HIS P 1384 UNP Q99ZW2 EXPRESSION TAG SEQRES 1 A 42 U A C C A G C A A A A C A SEQRES 2 A 42 C U C C G A U G U U U U A SEQRES 3 A 42 G A G C U A U G C U G U U SEQRES 4 A 42 U U G SEQRES 1 B 70 A A A C A G C A U A G C A SEQRES 2 B 70 A G U U A A A A U A A G G SEQRES 3 B 70 C U A G U C C G U U A U C SEQRES 4 B 70 A A C U U G A A A A A G U SEQRES 5 B 70 G G C A C C G A G U C G G SEQRES 6 B 70 U G C U U SEQRES 1 P 1384 MET ASP LYS LYS TYR SER ILE GLY LEU ASP ILE GLY THR SEQRES 2 P 1384 ASN SER VAL GLY TRP ALA VAL ILE THR ASP GLU TYR LYS SEQRES 3 P 1384 VAL PRO SER LYS LYS PHE LYS VAL LEU GLY ASN THR ASP SEQRES 4 P 1384 ARG HIS SER ILE LYS LYS ASN LEU ILE GLY ALA LEU LEU SEQRES 5 P 1384 PHE ASP SER GLY GLU THR ALA GLU ALA THR ARG LEU LYS SEQRES 6 P 1384 ARG THR ALA ARG ARG ARG TYR THR ARG ARG LYS ASN ARG SEQRES 7 P 1384 ILE CYS TYR LEU GLN GLU ILE PHE SER ASN GLU MET ALA SEQRES 8 P 1384 LYS VAL ASP ASP SER PHE PHE HIS ARG LEU GLU GLU SER SEQRES 9 P 1384 PHE LEU VAL GLU GLU ASP LYS LYS HIS GLU ARG HIS PRO SEQRES 10 P 1384 ILE PHE GLY ASN ILE VAL ASP GLU VAL ALA TYR HIS GLU SEQRES 11 P 1384 LYS TYR PRO THR ILE TYR HIS LEU ARG LYS LYS LEU VAL SEQRES 12 P 1384 ASP SER THR ASP LYS ALA ASP LEU ARG LEU ILE TYR LEU SEQRES 13 P 1384 ALA LEU ALA HIS MET ILE LYS PHE ARG GLY HIS PHE LEU SEQRES 14 P 1384 ILE GLU GLY ASP LEU ASN PRO ASP ASN SER ASP VAL ASP SEQRES 15 P 1384 LYS LEU PHE ILE GLN LEU VAL GLN THR TYR ASN GLN LEU SEQRES 16 P 1384 PHE GLU GLU ASN PRO ILE ASN ALA SER GLY VAL ASP ALA SEQRES 17 P 1384 LYS ALA ILE LEU SER ALA ARG LEU SER LYS SER ARG ARG SEQRES 18 P 1384 LEU GLU ASN LEU ILE ALA GLN LEU PRO GLY GLU LYS LYS SEQRES 19 P 1384 ASN GLY LEU PHE GLY ASN LEU ILE ALA LEU SER LEU GLY SEQRES 20 P 1384 LEU THR PRO ASN PHE LYS SER ASN PHE ASP LEU ALA GLU SEQRES 21 P 1384 ASP ALA LYS LEU GLN LEU SER LYS ASP THR TYR ASP ASP SEQRES 22 P 1384 ASP LEU ASP ASN LEU LEU ALA GLN ILE GLY ASP GLN TYR SEQRES 23 P 1384 ALA ASP LEU PHE LEU ALA ALA LYS ASN LEU SER ASP ALA SEQRES 24 P 1384 ILE LEU LEU SER ASP ILE LEU ARG VAL ASN THR GLU ILE SEQRES 25 P 1384 THR LYS ALA PRO LEU SER ALA SER MET ILE LYS ARG TYR SEQRES 26 P 1384 ASP GLU HIS HIS GLN ASP LEU THR LEU LEU LYS ALA LEU SEQRES 27 P 1384 VAL ARG GLN GLN LEU PRO GLU LYS TYR LYS GLU ILE PHE SEQRES 28 P 1384 PHE ASP GLN SER LYS ASN GLY TYR ALA GLY TYR ILE ASP SEQRES 29 P 1384 GLY GLY ALA SER GLN GLU GLU PHE TYR LYS PHE ILE LYS SEQRES 30 P 1384 PRO ILE LEU GLU LYS MET ASP GLY THR GLU GLU LEU LEU SEQRES 31 P 1384 VAL LYS LEU ASN ARG GLU ASP LEU LEU ARG LYS GLN ARG SEQRES 32 P 1384 THR PHE ASP ASN GLY SER ILE PRO HIS GLN ILE HIS LEU SEQRES 33 P 1384 GLY GLU LEU HIS ALA ILE LEU ARG ARG GLN GLU ASP PHE SEQRES 34 P 1384 TYR PRO PHE LEU LYS ASP ASN ARG GLU LYS ILE GLU LYS SEQRES 35 P 1384 ILE LEU THR PHE ARG ILE PRO TYR TYR VAL GLY PRO LEU SEQRES 36 P 1384 ALA ARG GLY ASN SER ARG PHE ALA TRP MET THR ARG LYS SEQRES 37 P 1384 SER GLU GLU THR ILE THR PRO TRP ASN PHE GLU GLU VAL SEQRES 38 P 1384 VAL ASP LYS GLY ALA SER ALA GLN SER PHE ILE GLU ARG SEQRES 39 P 1384 MET THR ASN PHE ASP LYS ASN LEU PRO ASN GLU LYS VAL SEQRES 40 P 1384 LEU PRO LYS HIS SER LEU LEU TYR GLU TYR PHE THR VAL SEQRES 41 P 1384 TYR ASN GLU LEU THR LYS VAL LYS TYR VAL THR GLU GLY SEQRES 42 P 1384 MET ARG LYS PRO ALA PHE LEU SER GLY GLU GLN LYS LYS SEQRES 43 P 1384 ALA ILE VAL ASP LEU LEU PHE LYS THR ASN ARG LYS VAL SEQRES 44 P 1384 THR VAL LYS GLN LEU LYS GLU ASP TYR PHE LYS LYS ILE SEQRES 45 P 1384 GLU CYS PHE ASP SER VAL GLU ILE SER GLY VAL GLU ASP SEQRES 46 P 1384 ARG PHE ASN ALA SER LEU GLY THR TYR HIS ASP LEU LEU SEQRES 47 P 1384 LYS ILE ILE LYS ASP LYS ASP PHE LEU ASP ASN GLU GLU SEQRES 48 P 1384 ASN GLU ASP ILE LEU GLU ASP ILE VAL LEU THR LEU THR SEQRES 49 P 1384 LEU PHE GLU ASP ARG GLU MET ILE GLU GLU ARG LEU LYS SEQRES 50 P 1384 THR TYR ALA HIS LEU PHE ASP ASP LYS VAL MET LYS GLN SEQRES 51 P 1384 LEU LYS ARG ARG ARG TYR THR GLY TRP GLY ARG LEU SER SEQRES 52 P 1384 ARG LYS LEU ILE ASN GLY ILE ARG ASP LYS GLN SER GLY SEQRES 53 P 1384 LYS THR ILE LEU ASP PHE LEU LYS SER ASP GLY PHE ALA SEQRES 54 P 1384 ASN ARG ASN PHE MET GLN LEU ILE HIS ASP ASP SER LEU SEQRES 55 P 1384 THR PHE LYS GLU ASP ILE GLN LYS ALA GLN VAL SER GLY SEQRES 56 P 1384 GLN GLY ASP SER LEU HIS GLU HIS ILE ALA ASN LEU ALA SEQRES 57 P 1384 GLY SER PRO ALA ILE LYS LYS GLY ILE LEU GLN THR VAL SEQRES 58 P 1384 LYS VAL VAL ASP GLU LEU VAL LYS VAL MET GLY ARG HIS SEQRES 59 P 1384 LYS PRO GLU ASN ILE VAL ILE GLU MET ALA ARG GLU ASN SEQRES 60 P 1384 GLN THR THR GLN LYS GLY GLN LYS ASN SER ARG GLU ARG SEQRES 61 P 1384 MET LYS ARG ILE GLU GLU GLY ILE LYS GLU LEU GLY SER SEQRES 62 P 1384 GLN ILE LEU LYS GLU HIS PRO VAL GLU ASN THR GLN LEU SEQRES 63 P 1384 GLN ASN GLU LYS LEU TYR LEU TYR TYR LEU GLN ASN GLY SEQRES 64 P 1384 ARG ASP MET TYR VAL ASP GLN GLU LEU ASP ILE ASN ARG SEQRES 65 P 1384 LEU SER ASP TYR ASP VAL ASP HIS ILE VAL PRO GLN SER SEQRES 66 P 1384 PHE LEU LYS ASP ASP SER ILE ASP ASN LYS VAL LEU THR SEQRES 67 P 1384 ARG SER ASP LYS ASN ARG GLY LYS SER ASP ASN VAL PRO SEQRES 68 P 1384 SER GLU GLU VAL VAL LYS LYS MET LYS ASN TYR TRP ARG SEQRES 69 P 1384 GLN LEU LEU ASN ALA LYS LEU ILE THR GLN ARG LYS PHE SEQRES 70 P 1384 ASP ASN LEU THR LYS ALA GLU ARG GLY GLY LEU SER GLU SEQRES 71 P 1384 LEU ASP LYS ALA GLY PHE ILE LYS ARG GLN LEU VAL GLU SEQRES 72 P 1384 THR ARG GLN ILE THR LYS HIS VAL ALA GLN ILE LEU ASP SEQRES 73 P 1384 SER ARG MET ASN THR LYS TYR ASP GLU ASN ASP LYS LEU SEQRES 74 P 1384 ILE ARG GLU VAL LYS VAL ILE THR LEU LYS SER LYS LEU SEQRES 75 P 1384 VAL SER ASP PHE ARG LYS ASP PHE GLN PHE TYR LYS VAL SEQRES 76 P 1384 ARG GLU ILE ASN ASN TYR HIS HIS ALA HIS ASP ALA TYR SEQRES 77 P 1384 LEU ASN ALA VAL VAL GLY THR ALA LEU ILE LYS LYS TYR SEQRES 78 P 1384 PRO LYS LEU GLU SER GLU PHE VAL TYR GLY ASP TYR LYS SEQRES 79 P 1384 VAL TYR ASP VAL ARG LYS MET ILE ALA LYS SER GLU GLN SEQRES 80 P 1384 GLU ILE GLY LYS ALA THR ALA LYS TYR PHE PHE TYR SER SEQRES 81 P 1384 ASN ILE MET ASN PHE PHE LYS THR GLU ILE THR LEU ALA SEQRES 82 P 1384 ASN GLY GLU ILE ARG LYS ARG PRO LEU ILE GLU THR ASN SEQRES 83 P 1384 GLY GLU THR GLY GLU ILE VAL TRP ASP LYS GLY ARG ASP SEQRES 84 P 1384 PHE ALA THR VAL ARG LYS VAL LEU SER MET PRO GLN VAL SEQRES 85 P 1384 ASN ILE VAL LYS LYS THR GLU VAL GLN THR GLY GLY PHE SEQRES 86 P 1384 SER LYS GLU SER ILE LEU PRO LYS ARG ASN SER ASP LYS SEQRES 87 P 1384 LEU ILE ALA ARG LYS LYS ASP TRP ASP PRO LYS LYS TYR SEQRES 88 P 1384 GLY GLY PHE ASP SER PRO THR VAL ALA TYR SER VAL LEU SEQRES 89 P 1384 VAL VAL ALA LYS VAL GLU LYS GLY LYS SER LYS LYS LEU SEQRES 90 P 1384 LYS SER VAL LYS GLU LEU LEU GLY ILE THR ILE MET GLU SEQRES 91 P 1384 ARG SER SER PHE GLU LYS ASN PRO ILE ASP PHE LEU GLU SEQRES 92 P 1384 ALA LYS GLY TYR LYS GLU VAL LYS LYS ASP LEU ILE ILE SEQRES 93 P 1384 LYS LEU PRO LYS TYR SER LEU PHE GLU LEU GLU ASN GLY SEQRES 94 P 1384 ARG LYS ARG MET LEU ALA SER ALA GLY GLU LEU GLN LYS SEQRES 95 P 1384 GLY ASN GLU LEU ALA LEU PRO SER LYS TYR VAL ASN PHE SEQRES 96 P 1384 LEU TYR LEU ALA SER HIS TYR GLU LYS LEU LYS GLY SER SEQRES 97 P 1384 PRO GLU ASP ASN GLU GLN LYS GLN LEU PHE VAL GLU GLN SEQRES 98 P 1384 HIS LYS HIS TYR LEU ASP GLU ILE ILE GLU GLN ILE SER SEQRES 99 P 1384 GLU PHE SER LYS ARG VAL ILE LEU ALA ASP ALA ASN LEU SEQRES 100 P 1384 ASP LYS VAL LEU SER ALA TYR ASN LYS HIS ARG ASP LYS SEQRES 101 P 1384 PRO ILE ARG GLU GLN ALA GLU ASN ILE ILE HIS LEU PHE SEQRES 102 P 1384 THR LEU THR ASN LEU GLY ALA PRO ALA ALA PHE LYS TYR SEQRES 103 P 1384 PHE ASP THR THR ILE ASP ARG LYS ARG TYR THR SER THR SEQRES 104 P 1384 LYS GLU VAL LEU ASP ALA THR LEU ILE HIS GLN SER ILE SEQRES 105 P 1384 THR GLY LEU TYR GLU THR ARG ILE ASP LEU SER GLN LEU SEQRES 106 P 1384 GLY GLY ASP PRO LYS LYS LYS ARG LYS VAL MET ASP LYS SEQRES 107 P 1384 HIS HIS HIS HIS HIS HIS HELIX 1 AA1 THR P 58 LEU P 64 1 7 HELIX 2 AA2 ALA P 68 ALA P 91 1 24 HELIX 3 AA3 SER P 96 GLU P 103 1 8 HELIX 4 AA4 ASN P 121 TYR P 132 1 12 HELIX 5 AA5 THR P 134 ASP P 144 1 11 HELIX 6 AA6 ASP P 150 PHE P 164 1 15 HELIX 7 AA7 ASN P 175 SER P 179 5 5 HELIX 8 AA8 VAL P 181 PHE P 196 1 16 HELIX 9 AA9 ASP P 207 SER P 213 1 7 HELIX 10 AB1 SER P 219 ALA P 227 1 9 HELIX 11 AB2 GLY P 236 SER P 245 1 10 HELIX 12 AB3 TYR P 271 GLY P 283 1 13 HELIX 13 AB4 ASP P 284 ALA P 287 5 4 HELIX 14 AB5 ALA P 293 LEU P 306 1 14 HELIX 15 AB6 ALA P 315 GLN P 342 1 28 HELIX 16 AB7 LYS P 346 PHE P 352 1 7 HELIX 17 AB8 GLY P 358 GLY P 365 1 8 HELIX 18 AB9 SER P 368 MET P 383 1 16 HELIX 19 AC1 LEU P 389 ARG P 395 1 7 HELIX 20 AC2 PRO P 411 GLN P 426 1 16 HELIX 21 AC3 TYR P 430 PHE P 446 1 17 HELIX 22 AC4 SER P 719 LEU P 727 1 9 HELIX 23 AC5 SER P 730 MET P 751 1 22 HELIX 24 AC6 GLN P 771 GLY P 792 1 22 HELIX 25 AC7 GLN P 794 HIS P 799 1 6 HELIX 26 AC8 GLU P 802 GLN P 807 1 6 HELIX 27 AC9 ASN P 808 GLN P 817 1 10 HELIX 28 AD1 SER P 851 ASP P 853 5 3 HELIX 29 AD2 SER P 860 ARG P 864 5 5 HELIX 30 AD3 SER P 872 ASN P 888 1 17 HELIX 31 AD4 THR P 893 THR P 901 1 9 HELIX 32 AD5 LYS P 902 GLY P 906 5 5 HELIX 33 AD6 SER P 909 VAL P 922 1 14 HELIX 34 AD7 ARG P 925 ASN P 940 1 16 HELIX 35 AD8 LYS P 959 GLN P 971 1 13 HELIX 36 AD9 TYR P 981 TYR P 1001 1 21 HELIX 37 AE1 LEU P 1004 VAL P 1009 1 6 HELIX 38 AE2 SER P 1025 GLY P 1030 1 6 HELIX 39 AE3 ASN P 1041 LYS P 1047 5 7 HELIX 40 AE4 LYS P 1076 MET P 1089 1 14 HELIX 41 AE5 GLU P 1170 ASN P 1177 1 8 HELIX 42 AE6 ASN P 1177 GLY P 1186 1 10 HELIX 43 AE7 GLU P 1207 GLY P 1209 5 3 HELIX 44 AE8 PRO P 1229 HIS P 1241 1 13 HELIX 45 AE9 SER P 1248 HIS P 1262 1 15 HELIX 46 AF1 HIS P 1264 VAL P 1280 1 17 HELIX 47 AF2 ALA P 1283 HIS P 1297 1 15 HELIX 48 AF3 PRO P 1301 PHE P 1313 1 13 SHEET 1 AA1 6 LYS P 954 THR P 957 0 SHEET 2 AA1 6 ASN P 758 MET P 763 1 N ILE P 761 O ILE P 956 SHEET 3 AA1 6 SER P 6 ILE P 11 1 N ILE P 7 O ASN P 758 SHEET 4 AA1 6 VAL P 16 ILE P 21 -1 O ILE P 21 N SER P 6 SHEET 5 AA1 6 ILE P 48 LEU P 52 -1 O GLY P 49 N TRP P 18 SHEET 6 AA1 6 ASN P1093 LYS P1096 1 O VAL P1095 N LEU P 52 SHEET 1 AA2 2 SER P 29 LYS P 30 0 SHEET 2 AA2 2 LYS P 45 ASN P 46 -1 O LYS P 45 N LYS P 30 SHEET 1 AA3 6 LEU P 35 GLY P 36 0 SHEET 2 AA3 6 GLU P1357 ASP P1361 1 O GLU P1357 N LEU P 35 SHEET 3 AA3 6 THR P1346 GLN P1350 -1 N LEU P1347 O ILE P1360 SHEET 4 AA3 6 LEU P1203 GLU P1205 -1 N LEU P1203 O ILE P1348 SHEET 5 AA3 6 LYS P1211 LEU P1214 -1 O ARG P1212 N PHE P1204 SHEET 6 AA3 6 LEU P1220 LYS P1222 -1 O GLN P1221 N MET P1213 SHEET 1 AA4 2 ASP P 837 HIS P 840 0 SHEET 2 AA4 2 LYS P 855 THR P 858 -1 O VAL P 856 N ASP P 839 SHEET 1 AA5 2 ILE P1063 THR P1065 0 SHEET 2 AA5 2 ILE P1072 ASP P1075 -1 O VAL P1073 N GLU P1064 SHEET 1 AA6 3 LEU P1157 THR P1167 0 SHEET 2 AA6 3 VAL P1139 GLU P1150 -1 N ALA P1147 O VAL P1160 SHEET 3 AA6 3 ILE P1196 LYS P1197 -1 O ILE P1196 N LEU P1144 SHEET 1 AA7 2 PHE P1324 LYS P1325 0 SHEET 2 AA7 2 THR P1330 ILE P1331 -1 O ILE P1331 N PHE P1324 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 TER 382 U A 38 TER 1589 U B 70 TER 10245 GLY P1366 MASTER 568 0 0 48 23 0 0 610242 3 0 117 END