data_9B34 # _entry.id 9B34 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.395 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9B34 pdb_00009b34 10.2210/pdb9b34/pdb WWPDB D_1000281721 ? ? EMDB EMD-44125 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2024-05-22 2 'Structure model' 1 1 2024-06-05 3 'Structure model' 1 2 2024-06-26 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' citation 3 3 'Structure model' citation_author 4 3 'Structure model' em_admin # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.pdbx_database_id_PubMed' 2 2 'Structure model' '_citation.title' 3 3 'Structure model' '_citation.journal_volume' 4 3 'Structure model' '_citation.page_first' 5 3 'Structure model' '_citation.page_last' 6 3 'Structure model' '_citation_author.identifier_ORCID' 7 3 'Structure model' '_em_admin.last_update' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9B34 _pdbx_database_status.recvd_initial_deposition_date 2024-03-18 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details ;Structure of concanavalin A (ConA) dimer from the open-state structure of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to two ConA dimers. Type I interface between GluK2 ligand-binding domain and ConA ; _pdbx_database_related.db_id EMD-44125 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email as4005@cumc.columbia.edu _pdbx_contact_author.name_first Alexander _pdbx_contact_author.name_last Sobolevsky _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-5181-8644 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Nadezhdin, K.D.' 1 0000-0002-7140-0779 'Gangwar, S.P.' 2 0000-0003-1024-7608 'Sobolevsky, A.I.' 3 0000-0001-5181-8644 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Nature _citation.journal_id_ASTM NATUAS _citation.journal_id_CSD 0006 _citation.journal_id_ISSN 1476-4687 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 630 _citation.language ? _citation.page_first 762 _citation.page_last 768 _citation.title 'Kainate receptor channel opening and gating mechanism.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41586-024-07475-0 _citation.pdbx_database_id_PubMed 38778115 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gangwar, S.P.' 1 0000-0003-1024-7608 primary 'Yelshanskaya, M.V.' 2 ? primary 'Nadezhdin, K.D.' 3 0000-0002-7140-0779 primary 'Yen, L.Y.' 4 ? primary 'Newton, T.P.' 5 ? primary 'Aktolun, M.' 6 0000-0002-2155-2977 primary 'Kurnikova, M.G.' 7 0000-0002-8010-8374 primary 'Sobolevsky, A.I.' 8 0000-0001-5181-8644 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Concanavalin A' 25622.385 2 ? ? ? ? 2 non-polymer syn 'ZINC ION' 65.409 2 ? ? ? ? 3 non-polymer syn 'CALCIUM ION' 40.078 2 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Con A' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;ADTIVAVELDTYPNTDIGDPSYPHIGIDIKSVRSKKTAKWNMQNGKVGTAHIIYNSVDKRLSAVVSYPNADSATVSYDVD LDNVLPEWVRVGLSASTGLYKETNTILSWSFTSKLKSNSTHETNALHFMFNQFSKDQKDLILQGDATTGTDGNLELTRVS SNGSPQGSSVGRALFYAPVHIWESSAVVASFEATFTFLIKSPDSHPADGIAFFISNIDSSIPSGSTGRLLGLFPDAN ; _entity_poly.pdbx_seq_one_letter_code_can ;ADTIVAVELDTYPNTDIGDPSYPHIGIDIKSVRSKKTAKWNMQNGKVGTAHIIYNSVDKRLSAVVSYPNADSATVSYDVD LDNVLPEWVRVGLSASTGLYKETNTILSWSFTSKLKSNSTHETNALHFMFNQFSKDQKDLILQGDATTGTDGNLELTRVS SNGSPQGSSVGRALFYAPVHIWESSAVVASFEATFTFLIKSPDSHPADGIAFFISNIDSSIPSGSTGRLLGLFPDAN ; _entity_poly.pdbx_strand_id E,F _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ZINC ION' ZN 3 'CALCIUM ION' CA # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 ASP n 1 3 THR n 1 4 ILE n 1 5 VAL n 1 6 ALA n 1 7 VAL n 1 8 GLU n 1 9 LEU n 1 10 ASP n 1 11 THR n 1 12 TYR n 1 13 PRO n 1 14 ASN n 1 15 THR n 1 16 ASP n 1 17 ILE n 1 18 GLY n 1 19 ASP n 1 20 PRO n 1 21 SER n 1 22 TYR n 1 23 PRO n 1 24 HIS n 1 25 ILE n 1 26 GLY n 1 27 ILE n 1 28 ASP n 1 29 ILE n 1 30 LYS n 1 31 SER n 1 32 VAL n 1 33 ARG n 1 34 SER n 1 35 LYS n 1 36 LYS n 1 37 THR n 1 38 ALA n 1 39 LYS n 1 40 TRP n 1 41 ASN n 1 42 MET n 1 43 GLN n 1 44 ASN n 1 45 GLY n 1 46 LYS n 1 47 VAL n 1 48 GLY n 1 49 THR n 1 50 ALA n 1 51 HIS n 1 52 ILE n 1 53 ILE n 1 54 TYR n 1 55 ASN n 1 56 SER n 1 57 VAL n 1 58 ASP n 1 59 LYS n 1 60 ARG n 1 61 LEU n 1 62 SER n 1 63 ALA n 1 64 VAL n 1 65 VAL n 1 66 SER n 1 67 TYR n 1 68 PRO n 1 69 ASN n 1 70 ALA n 1 71 ASP n 1 72 SER n 1 73 ALA n 1 74 THR n 1 75 VAL n 1 76 SER n 1 77 TYR n 1 78 ASP n 1 79 VAL n 1 80 ASP n 1 81 LEU n 1 82 ASP n 1 83 ASN n 1 84 VAL n 1 85 LEU n 1 86 PRO n 1 87 GLU n 1 88 TRP n 1 89 VAL n 1 90 ARG n 1 91 VAL n 1 92 GLY n 1 93 LEU n 1 94 SER n 1 95 ALA n 1 96 SER n 1 97 THR n 1 98 GLY n 1 99 LEU n 1 100 TYR n 1 101 LYS n 1 102 GLU n 1 103 THR n 1 104 ASN n 1 105 THR n 1 106 ILE n 1 107 LEU n 1 108 SER n 1 109 TRP n 1 110 SER n 1 111 PHE n 1 112 THR n 1 113 SER n 1 114 LYS n 1 115 LEU n 1 116 LYS n 1 117 SER n 1 118 ASN n 1 119 SER n 1 120 THR n 1 121 HIS n 1 122 GLU n 1 123 THR n 1 124 ASN n 1 125 ALA n 1 126 LEU n 1 127 HIS n 1 128 PHE n 1 129 MET n 1 130 PHE n 1 131 ASN n 1 132 GLN n 1 133 PHE n 1 134 SER n 1 135 LYS n 1 136 ASP n 1 137 GLN n 1 138 LYS n 1 139 ASP n 1 140 LEU n 1 141 ILE n 1 142 LEU n 1 143 GLN n 1 144 GLY n 1 145 ASP n 1 146 ALA n 1 147 THR n 1 148 THR n 1 149 GLY n 1 150 THR n 1 151 ASP n 1 152 GLY n 1 153 ASN n 1 154 LEU n 1 155 GLU n 1 156 LEU n 1 157 THR n 1 158 ARG n 1 159 VAL n 1 160 SER n 1 161 SER n 1 162 ASN n 1 163 GLY n 1 164 SER n 1 165 PRO n 1 166 GLN n 1 167 GLY n 1 168 SER n 1 169 SER n 1 170 VAL n 1 171 GLY n 1 172 ARG n 1 173 ALA n 1 174 LEU n 1 175 PHE n 1 176 TYR n 1 177 ALA n 1 178 PRO n 1 179 VAL n 1 180 HIS n 1 181 ILE n 1 182 TRP n 1 183 GLU n 1 184 SER n 1 185 SER n 1 186 ALA n 1 187 VAL n 1 188 VAL n 1 189 ALA n 1 190 SER n 1 191 PHE n 1 192 GLU n 1 193 ALA n 1 194 THR n 1 195 PHE n 1 196 THR n 1 197 PHE n 1 198 LEU n 1 199 ILE n 1 200 LYS n 1 201 SER n 1 202 PRO n 1 203 ASP n 1 204 SER n 1 205 HIS n 1 206 PRO n 1 207 ALA n 1 208 ASP n 1 209 GLY n 1 210 ILE n 1 211 ALA n 1 212 PHE n 1 213 PHE n 1 214 ILE n 1 215 SER n 1 216 ASN n 1 217 ILE n 1 218 ASP n 1 219 SER n 1 220 SER n 1 221 ILE n 1 222 PRO n 1 223 SER n 1 224 GLY n 1 225 SER n 1 226 THR n 1 227 GLY n 1 228 ARG n 1 229 LEU n 1 230 LEU n 1 231 GLY n 1 232 LEU n 1 233 PHE n 1 234 PRO n 1 235 ASP n 1 236 ALA n 1 237 ASN n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample 1 118 'jack bean' 'Canavalia ensiformis' 3823 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 1 2 sample 119 237 'jack bean' 'Canavalia ensiformis' 3823 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 1 ALA ALA E . n A 1 2 ASP 2 2 2 ASP ASP E . n A 1 3 THR 3 3 3 THR THR E . n A 1 4 ILE 4 4 4 ILE ILE E . n A 1 5 VAL 5 5 5 VAL VAL E . n A 1 6 ALA 6 6 6 ALA ALA E . n A 1 7 VAL 7 7 7 VAL VAL E . n A 1 8 GLU 8 8 8 GLU GLU E . n A 1 9 LEU 9 9 9 LEU LEU E . n A 1 10 ASP 10 10 10 ASP ASP E . n A 1 11 THR 11 11 11 THR THR E . n A 1 12 TYR 12 12 12 TYR TYR E . n A 1 13 PRO 13 13 13 PRO PRO E . n A 1 14 ASN 14 14 14 ASN ASN E . n A 1 15 THR 15 15 15 THR THR E . n A 1 16 ASP 16 16 16 ASP ASP E . n A 1 17 ILE 17 17 17 ILE ILE E . n A 1 18 GLY 18 18 18 GLY GLY E . n A 1 19 ASP 19 19 19 ASP ASP E . n A 1 20 PRO 20 20 20 PRO PRO E . n A 1 21 SER 21 21 21 SER SER E . n A 1 22 TYR 22 22 22 TYR TYR E . n A 1 23 PRO 23 23 23 PRO PRO E . n A 1 24 HIS 24 24 24 HIS HIS E . n A 1 25 ILE 25 25 25 ILE ILE E . n A 1 26 GLY 26 26 26 GLY GLY E . n A 1 27 ILE 27 27 27 ILE ILE E . n A 1 28 ASP 28 28 28 ASP ASP E . n A 1 29 ILE 29 29 29 ILE ILE E . n A 1 30 LYS 30 30 30 LYS LYS E . n A 1 31 SER 31 31 31 SER SER E . n A 1 32 VAL 32 32 32 VAL VAL E . n A 1 33 ARG 33 33 33 ARG ARG E . n A 1 34 SER 34 34 34 SER SER E . n A 1 35 LYS 35 35 35 LYS LYS E . n A 1 36 LYS 36 36 36 LYS LYS E . n A 1 37 THR 37 37 37 THR THR E . n A 1 38 ALA 38 38 38 ALA ALA E . n A 1 39 LYS 39 39 39 LYS LYS E . n A 1 40 TRP 40 40 40 TRP TRP E . n A 1 41 ASN 41 41 41 ASN ASN E . n A 1 42 MET 42 42 42 MET MET E . n A 1 43 GLN 43 43 43 GLN GLN E . n A 1 44 ASN 44 44 44 ASN ASN E . n A 1 45 GLY 45 45 45 GLY GLY E . n A 1 46 LYS 46 46 46 LYS LYS E . n A 1 47 VAL 47 47 47 VAL VAL E . n A 1 48 GLY 48 48 48 GLY GLY E . n A 1 49 THR 49 49 49 THR THR E . n A 1 50 ALA 50 50 50 ALA ALA E . n A 1 51 HIS 51 51 51 HIS HIS E . n A 1 52 ILE 52 52 52 ILE ILE E . n A 1 53 ILE 53 53 53 ILE ILE E . n A 1 54 TYR 54 54 54 TYR TYR E . n A 1 55 ASN 55 55 55 ASN ASN E . n A 1 56 SER 56 56 56 SER SER E . n A 1 57 VAL 57 57 57 VAL VAL E . n A 1 58 ASP 58 58 58 ASP ASP E . n A 1 59 LYS 59 59 59 LYS LYS E . n A 1 60 ARG 60 60 60 ARG ARG E . n A 1 61 LEU 61 61 61 LEU LEU E . n A 1 62 SER 62 62 62 SER SER E . n A 1 63 ALA 63 63 63 ALA ALA E . n A 1 64 VAL 64 64 64 VAL VAL E . n A 1 65 VAL 65 65 65 VAL VAL E . n A 1 66 SER 66 66 66 SER SER E . n A 1 67 TYR 67 67 67 TYR TYR E . n A 1 68 PRO 68 68 68 PRO PRO E . n A 1 69 ASN 69 69 69 ASN ASN E . n A 1 70 ALA 70 70 70 ALA ALA E . n A 1 71 ASP 71 71 71 ASP ASP E . n A 1 72 SER 72 72 72 SER SER E . n A 1 73 ALA 73 73 73 ALA ALA E . n A 1 74 THR 74 74 74 THR THR E . n A 1 75 VAL 75 75 75 VAL VAL E . n A 1 76 SER 76 76 76 SER SER E . n A 1 77 TYR 77 77 77 TYR TYR E . n A 1 78 ASP 78 78 78 ASP ASP E . n A 1 79 VAL 79 79 79 VAL VAL E . n A 1 80 ASP 80 80 80 ASP ASP E . n A 1 81 LEU 81 81 81 LEU LEU E . n A 1 82 ASP 82 82 82 ASP ASP E . n A 1 83 ASN 83 83 83 ASN ASN E . n A 1 84 VAL 84 84 84 VAL VAL E . n A 1 85 LEU 85 85 85 LEU LEU E . n A 1 86 PRO 86 86 86 PRO PRO E . n A 1 87 GLU 87 87 87 GLU GLU E . n A 1 88 TRP 88 88 88 TRP TRP E . n A 1 89 VAL 89 89 89 VAL VAL E . n A 1 90 ARG 90 90 90 ARG ARG E . n A 1 91 VAL 91 91 91 VAL VAL E . n A 1 92 GLY 92 92 92 GLY GLY E . n A 1 93 LEU 93 93 93 LEU LEU E . n A 1 94 SER 94 94 94 SER SER E . n A 1 95 ALA 95 95 95 ALA ALA E . n A 1 96 SER 96 96 96 SER SER E . n A 1 97 THR 97 97 97 THR THR E . n A 1 98 GLY 98 98 98 GLY GLY E . n A 1 99 LEU 99 99 99 LEU LEU E . n A 1 100 TYR 100 100 100 TYR TYR E . n A 1 101 LYS 101 101 101 LYS LYS E . n A 1 102 GLU 102 102 102 GLU GLU E . n A 1 103 THR 103 103 103 THR THR E . n A 1 104 ASN 104 104 104 ASN ASN E . n A 1 105 THR 105 105 105 THR THR E . n A 1 106 ILE 106 106 106 ILE ILE E . n A 1 107 LEU 107 107 107 LEU LEU E . n A 1 108 SER 108 108 108 SER SER E . n A 1 109 TRP 109 109 109 TRP TRP E . n A 1 110 SER 110 110 110 SER SER E . n A 1 111 PHE 111 111 111 PHE PHE E . n A 1 112 THR 112 112 112 THR THR E . n A 1 113 SER 113 113 113 SER SER E . n A 1 114 LYS 114 114 114 LYS LYS E . n A 1 115 LEU 115 115 115 LEU LEU E . n A 1 116 LYS 116 116 116 LYS LYS E . n A 1 117 SER 117 117 117 SER SER E . n A 1 118 ASN 118 118 118 ASN ASN E . n A 1 119 SER 119 119 119 SER SER E . n A 1 120 THR 120 120 120 THR THR E . n A 1 121 HIS 121 121 121 HIS HIS E . n A 1 122 GLU 122 122 122 GLU GLU E . n A 1 123 THR 123 123 123 THR THR E . n A 1 124 ASN 124 124 124 ASN ASN E . n A 1 125 ALA 125 125 125 ALA ALA E . n A 1 126 LEU 126 126 126 LEU LEU E . n A 1 127 HIS 127 127 127 HIS HIS E . n A 1 128 PHE 128 128 128 PHE PHE E . n A 1 129 MET 129 129 129 MET MET E . n A 1 130 PHE 130 130 130 PHE PHE E . n A 1 131 ASN 131 131 131 ASN ASN E . n A 1 132 GLN 132 132 132 GLN GLN E . n A 1 133 PHE 133 133 133 PHE PHE E . n A 1 134 SER 134 134 134 SER SER E . n A 1 135 LYS 135 135 135 LYS LYS E . n A 1 136 ASP 136 136 136 ASP ASP E . n A 1 137 GLN 137 137 137 GLN GLN E . n A 1 138 LYS 138 138 138 LYS LYS E . n A 1 139 ASP 139 139 139 ASP ASP E . n A 1 140 LEU 140 140 140 LEU LEU E . n A 1 141 ILE 141 141 141 ILE ILE E . n A 1 142 LEU 142 142 142 LEU LEU E . n A 1 143 GLN 143 143 143 GLN GLN E . n A 1 144 GLY 144 144 144 GLY GLY E . n A 1 145 ASP 145 145 145 ASP ASP E . n A 1 146 ALA 146 146 146 ALA ALA E . n A 1 147 THR 147 147 147 THR THR E . n A 1 148 THR 148 148 148 THR THR E . n A 1 149 GLY 149 149 149 GLY GLY E . n A 1 150 THR 150 150 150 THR THR E . n A 1 151 ASP 151 151 151 ASP ASP E . n A 1 152 GLY 152 152 152 GLY GLY E . n A 1 153 ASN 153 153 153 ASN ASN E . n A 1 154 LEU 154 154 154 LEU LEU E . n A 1 155 GLU 155 155 155 GLU GLU E . n A 1 156 LEU 156 156 156 LEU LEU E . n A 1 157 THR 157 157 157 THR THR E . n A 1 158 ARG 158 158 158 ARG ARG E . n A 1 159 VAL 159 159 159 VAL VAL E . n A 1 160 SER 160 160 160 SER SER E . n A 1 161 SER 161 161 161 SER SER E . n A 1 162 ASN 162 162 162 ASN ASN E . n A 1 163 GLY 163 163 163 GLY GLY E . n A 1 164 SER 164 164 164 SER SER E . n A 1 165 PRO 165 165 165 PRO PRO E . n A 1 166 GLN 166 166 166 GLN GLN E . n A 1 167 GLY 167 167 167 GLY GLY E . n A 1 168 SER 168 168 168 SER SER E . n A 1 169 SER 169 169 169 SER SER E . n A 1 170 VAL 170 170 170 VAL VAL E . n A 1 171 GLY 171 171 171 GLY GLY E . n A 1 172 ARG 172 172 172 ARG ARG E . n A 1 173 ALA 173 173 173 ALA ALA E . n A 1 174 LEU 174 174 174 LEU LEU E . n A 1 175 PHE 175 175 175 PHE PHE E . n A 1 176 TYR 176 176 176 TYR TYR E . n A 1 177 ALA 177 177 177 ALA ALA E . n A 1 178 PRO 178 178 178 PRO PRO E . n A 1 179 VAL 179 179 179 VAL VAL E . n A 1 180 HIS 180 180 180 HIS HIS E . n A 1 181 ILE 181 181 181 ILE ILE E . n A 1 182 TRP 182 182 182 TRP TRP E . n A 1 183 GLU 183 183 183 GLU GLU E . n A 1 184 SER 184 184 184 SER SER E . n A 1 185 SER 185 185 185 SER SER E . n A 1 186 ALA 186 186 186 ALA ALA E . n A 1 187 VAL 187 187 187 VAL VAL E . n A 1 188 VAL 188 188 188 VAL VAL E . n A 1 189 ALA 189 189 189 ALA ALA E . n A 1 190 SER 190 190 190 SER SER E . n A 1 191 PHE 191 191 191 PHE PHE E . n A 1 192 GLU 192 192 192 GLU GLU E . n A 1 193 ALA 193 193 193 ALA ALA E . n A 1 194 THR 194 194 194 THR THR E . n A 1 195 PHE 195 195 195 PHE PHE E . n A 1 196 THR 196 196 196 THR THR E . n A 1 197 PHE 197 197 197 PHE PHE E . n A 1 198 LEU 198 198 198 LEU LEU E . n A 1 199 ILE 199 199 199 ILE ILE E . n A 1 200 LYS 200 200 200 LYS LYS E . n A 1 201 SER 201 201 201 SER SER E . n A 1 202 PRO 202 202 202 PRO PRO E . n A 1 203 ASP 203 203 203 ASP ASP E . n A 1 204 SER 204 204 204 SER SER E . n A 1 205 HIS 205 205 205 HIS HIS E . n A 1 206 PRO 206 206 206 PRO PRO E . n A 1 207 ALA 207 207 207 ALA ALA E . n A 1 208 ASP 208 208 208 ASP ASP E . n A 1 209 GLY 209 209 209 GLY GLY E . n A 1 210 ILE 210 210 210 ILE ILE E . n A 1 211 ALA 211 211 211 ALA ALA E . n A 1 212 PHE 212 212 212 PHE PHE E . n A 1 213 PHE 213 213 213 PHE PHE E . n A 1 214 ILE 214 214 214 ILE ILE E . n A 1 215 SER 215 215 215 SER SER E . n A 1 216 ASN 216 216 216 ASN ASN E . n A 1 217 ILE 217 217 217 ILE ILE E . n A 1 218 ASP 218 218 218 ASP ASP E . n A 1 219 SER 219 219 219 SER SER E . n A 1 220 SER 220 220 220 SER SER E . n A 1 221 ILE 221 221 221 ILE ILE E . n A 1 222 PRO 222 222 222 PRO PRO E . n A 1 223 SER 223 223 223 SER SER E . n A 1 224 GLY 224 224 224 GLY GLY E . n A 1 225 SER 225 225 225 SER SER E . n A 1 226 THR 226 226 226 THR THR E . n A 1 227 GLY 227 227 227 GLY GLY E . n A 1 228 ARG 228 228 228 ARG ARG E . n A 1 229 LEU 229 229 229 LEU LEU E . n A 1 230 LEU 230 230 230 LEU LEU E . n A 1 231 GLY 231 231 231 GLY GLY E . n A 1 232 LEU 232 232 232 LEU LEU E . n A 1 233 PHE 233 233 233 PHE PHE E . n A 1 234 PRO 234 234 234 PRO PRO E . n A 1 235 ASP 235 235 235 ASP ASP E . n A 1 236 ALA 236 236 236 ALA ALA E . n A 1 237 ASN 237 237 237 ASN ASN E . n B 1 1 ALA 1 1 1 ALA ALA F . n B 1 2 ASP 2 2 2 ASP ASP F . n B 1 3 THR 3 3 3 THR THR F . n B 1 4 ILE 4 4 4 ILE ILE F . n B 1 5 VAL 5 5 5 VAL VAL F . n B 1 6 ALA 6 6 6 ALA ALA F . n B 1 7 VAL 7 7 7 VAL VAL F . n B 1 8 GLU 8 8 8 GLU GLU F . n B 1 9 LEU 9 9 9 LEU LEU F . n B 1 10 ASP 10 10 10 ASP ASP F . n B 1 11 THR 11 11 11 THR THR F . n B 1 12 TYR 12 12 12 TYR TYR F . n B 1 13 PRO 13 13 13 PRO PRO F . n B 1 14 ASN 14 14 14 ASN ASN F . n B 1 15 THR 15 15 15 THR THR F . n B 1 16 ASP 16 16 16 ASP ASP F . n B 1 17 ILE 17 17 17 ILE ILE F . n B 1 18 GLY 18 18 18 GLY GLY F . n B 1 19 ASP 19 19 19 ASP ASP F . n B 1 20 PRO 20 20 20 PRO PRO F . n B 1 21 SER 21 21 21 SER SER F . n B 1 22 TYR 22 22 22 TYR TYR F . n B 1 23 PRO 23 23 23 PRO PRO F . n B 1 24 HIS 24 24 24 HIS HIS F . n B 1 25 ILE 25 25 25 ILE ILE F . n B 1 26 GLY 26 26 26 GLY GLY F . n B 1 27 ILE 27 27 27 ILE ILE F . n B 1 28 ASP 28 28 28 ASP ASP F . n B 1 29 ILE 29 29 29 ILE ILE F . n B 1 30 LYS 30 30 30 LYS LYS F . n B 1 31 SER 31 31 31 SER SER F . n B 1 32 VAL 32 32 32 VAL VAL F . n B 1 33 ARG 33 33 33 ARG ARG F . n B 1 34 SER 34 34 34 SER SER F . n B 1 35 LYS 35 35 35 LYS LYS F . n B 1 36 LYS 36 36 36 LYS LYS F . n B 1 37 THR 37 37 37 THR THR F . n B 1 38 ALA 38 38 38 ALA ALA F . n B 1 39 LYS 39 39 39 LYS LYS F . n B 1 40 TRP 40 40 40 TRP TRP F . n B 1 41 ASN 41 41 41 ASN ASN F . n B 1 42 MET 42 42 42 MET MET F . n B 1 43 GLN 43 43 43 GLN GLN F . n B 1 44 ASN 44 44 44 ASN ASN F . n B 1 45 GLY 45 45 45 GLY GLY F . n B 1 46 LYS 46 46 46 LYS LYS F . n B 1 47 VAL 47 47 47 VAL VAL F . n B 1 48 GLY 48 48 48 GLY GLY F . n B 1 49 THR 49 49 49 THR THR F . n B 1 50 ALA 50 50 50 ALA ALA F . n B 1 51 HIS 51 51 51 HIS HIS F . n B 1 52 ILE 52 52 52 ILE ILE F . n B 1 53 ILE 53 53 53 ILE ILE F . n B 1 54 TYR 54 54 54 TYR TYR F . n B 1 55 ASN 55 55 55 ASN ASN F . n B 1 56 SER 56 56 56 SER SER F . n B 1 57 VAL 57 57 57 VAL VAL F . n B 1 58 ASP 58 58 58 ASP ASP F . n B 1 59 LYS 59 59 59 LYS LYS F . n B 1 60 ARG 60 60 60 ARG ARG F . n B 1 61 LEU 61 61 61 LEU LEU F . n B 1 62 SER 62 62 62 SER SER F . n B 1 63 ALA 63 63 63 ALA ALA F . n B 1 64 VAL 64 64 64 VAL VAL F . n B 1 65 VAL 65 65 65 VAL VAL F . n B 1 66 SER 66 66 66 SER SER F . n B 1 67 TYR 67 67 67 TYR TYR F . n B 1 68 PRO 68 68 68 PRO PRO F . n B 1 69 ASN 69 69 69 ASN ASN F . n B 1 70 ALA 70 70 70 ALA ALA F . n B 1 71 ASP 71 71 71 ASP ASP F . n B 1 72 SER 72 72 72 SER SER F . n B 1 73 ALA 73 73 73 ALA ALA F . n B 1 74 THR 74 74 74 THR THR F . n B 1 75 VAL 75 75 75 VAL VAL F . n B 1 76 SER 76 76 76 SER SER F . n B 1 77 TYR 77 77 77 TYR TYR F . n B 1 78 ASP 78 78 78 ASP ASP F . n B 1 79 VAL 79 79 79 VAL VAL F . n B 1 80 ASP 80 80 80 ASP ASP F . n B 1 81 LEU 81 81 81 LEU LEU F . n B 1 82 ASP 82 82 82 ASP ASP F . n B 1 83 ASN 83 83 83 ASN ASN F . n B 1 84 VAL 84 84 84 VAL VAL F . n B 1 85 LEU 85 85 85 LEU LEU F . n B 1 86 PRO 86 86 86 PRO PRO F . n B 1 87 GLU 87 87 87 GLU GLU F . n B 1 88 TRP 88 88 88 TRP TRP F . n B 1 89 VAL 89 89 89 VAL VAL F . n B 1 90 ARG 90 90 90 ARG ARG F . n B 1 91 VAL 91 91 91 VAL VAL F . n B 1 92 GLY 92 92 92 GLY GLY F . n B 1 93 LEU 93 93 93 LEU LEU F . n B 1 94 SER 94 94 94 SER SER F . n B 1 95 ALA 95 95 95 ALA ALA F . n B 1 96 SER 96 96 96 SER SER F . n B 1 97 THR 97 97 97 THR THR F . n B 1 98 GLY 98 98 98 GLY GLY F . n B 1 99 LEU 99 99 99 LEU LEU F . n B 1 100 TYR 100 100 100 TYR TYR F . n B 1 101 LYS 101 101 101 LYS LYS F . n B 1 102 GLU 102 102 102 GLU GLU F . n B 1 103 THR 103 103 103 THR THR F . n B 1 104 ASN 104 104 104 ASN ASN F . n B 1 105 THR 105 105 105 THR THR F . n B 1 106 ILE 106 106 106 ILE ILE F . n B 1 107 LEU 107 107 107 LEU LEU F . n B 1 108 SER 108 108 108 SER SER F . n B 1 109 TRP 109 109 109 TRP TRP F . n B 1 110 SER 110 110 110 SER SER F . n B 1 111 PHE 111 111 111 PHE PHE F . n B 1 112 THR 112 112 112 THR THR F . n B 1 113 SER 113 113 113 SER SER F . n B 1 114 LYS 114 114 114 LYS LYS F . n B 1 115 LEU 115 115 115 LEU LEU F . n B 1 116 LYS 116 116 116 LYS LYS F . n B 1 117 SER 117 117 117 SER SER F . n B 1 118 ASN 118 118 118 ASN ASN F . n B 1 119 SER 119 119 119 SER SER F . n B 1 120 THR 120 120 120 THR THR F . n B 1 121 HIS 121 121 121 HIS HIS F . n B 1 122 GLU 122 122 122 GLU GLU F . n B 1 123 THR 123 123 123 THR THR F . n B 1 124 ASN 124 124 124 ASN ASN F . n B 1 125 ALA 125 125 125 ALA ALA F . n B 1 126 LEU 126 126 126 LEU LEU F . n B 1 127 HIS 127 127 127 HIS HIS F . n B 1 128 PHE 128 128 128 PHE PHE F . n B 1 129 MET 129 129 129 MET MET F . n B 1 130 PHE 130 130 130 PHE PHE F . n B 1 131 ASN 131 131 131 ASN ASN F . n B 1 132 GLN 132 132 132 GLN GLN F . n B 1 133 PHE 133 133 133 PHE PHE F . n B 1 134 SER 134 134 134 SER SER F . n B 1 135 LYS 135 135 135 LYS LYS F . n B 1 136 ASP 136 136 136 ASP ASP F . n B 1 137 GLN 137 137 137 GLN GLN F . n B 1 138 LYS 138 138 138 LYS LYS F . n B 1 139 ASP 139 139 139 ASP ASP F . n B 1 140 LEU 140 140 140 LEU LEU F . n B 1 141 ILE 141 141 141 ILE ILE F . n B 1 142 LEU 142 142 142 LEU LEU F . n B 1 143 GLN 143 143 143 GLN GLN F . n B 1 144 GLY 144 144 144 GLY GLY F . n B 1 145 ASP 145 145 145 ASP ASP F . n B 1 146 ALA 146 146 146 ALA ALA F . n B 1 147 THR 147 147 147 THR THR F . n B 1 148 THR 148 148 148 THR THR F . n B 1 149 GLY 149 149 149 GLY GLY F . n B 1 150 THR 150 150 150 THR THR F . n B 1 151 ASP 151 151 151 ASP ASP F . n B 1 152 GLY 152 152 152 GLY GLY F . n B 1 153 ASN 153 153 153 ASN ASN F . n B 1 154 LEU 154 154 154 LEU LEU F . n B 1 155 GLU 155 155 155 GLU GLU F . n B 1 156 LEU 156 156 156 LEU LEU F . n B 1 157 THR 157 157 157 THR THR F . n B 1 158 ARG 158 158 158 ARG ARG F . n B 1 159 VAL 159 159 159 VAL VAL F . n B 1 160 SER 160 160 160 SER SER F . n B 1 161 SER 161 161 161 SER SER F . n B 1 162 ASN 162 162 162 ASN ASN F . n B 1 163 GLY 163 163 163 GLY GLY F . n B 1 164 SER 164 164 164 SER SER F . n B 1 165 PRO 165 165 165 PRO PRO F . n B 1 166 GLN 166 166 166 GLN GLN F . n B 1 167 GLY 167 167 167 GLY GLY F . n B 1 168 SER 168 168 168 SER SER F . n B 1 169 SER 169 169 169 SER SER F . n B 1 170 VAL 170 170 170 VAL VAL F . n B 1 171 GLY 171 171 171 GLY GLY F . n B 1 172 ARG 172 172 172 ARG ARG F . n B 1 173 ALA 173 173 173 ALA ALA F . n B 1 174 LEU 174 174 174 LEU LEU F . n B 1 175 PHE 175 175 175 PHE PHE F . n B 1 176 TYR 176 176 176 TYR TYR F . n B 1 177 ALA 177 177 177 ALA ALA F . n B 1 178 PRO 178 178 178 PRO PRO F . n B 1 179 VAL 179 179 179 VAL VAL F . n B 1 180 HIS 180 180 180 HIS HIS F . n B 1 181 ILE 181 181 181 ILE ILE F . n B 1 182 TRP 182 182 182 TRP TRP F . n B 1 183 GLU 183 183 183 GLU GLU F . n B 1 184 SER 184 184 184 SER SER F . n B 1 185 SER 185 185 185 SER SER F . n B 1 186 ALA 186 186 186 ALA ALA F . n B 1 187 VAL 187 187 187 VAL VAL F . n B 1 188 VAL 188 188 188 VAL VAL F . n B 1 189 ALA 189 189 189 ALA ALA F . n B 1 190 SER 190 190 190 SER SER F . n B 1 191 PHE 191 191 191 PHE PHE F . n B 1 192 GLU 192 192 192 GLU GLU F . n B 1 193 ALA 193 193 193 ALA ALA F . n B 1 194 THR 194 194 194 THR THR F . n B 1 195 PHE 195 195 195 PHE PHE F . n B 1 196 THR 196 196 196 THR THR F . n B 1 197 PHE 197 197 197 PHE PHE F . n B 1 198 LEU 198 198 198 LEU LEU F . n B 1 199 ILE 199 199 199 ILE ILE F . n B 1 200 LYS 200 200 200 LYS LYS F . n B 1 201 SER 201 201 201 SER SER F . n B 1 202 PRO 202 202 202 PRO PRO F . n B 1 203 ASP 203 203 203 ASP ASP F . n B 1 204 SER 204 204 204 SER SER F . n B 1 205 HIS 205 205 205 HIS HIS F . n B 1 206 PRO 206 206 206 PRO PRO F . n B 1 207 ALA 207 207 207 ALA ALA F . n B 1 208 ASP 208 208 208 ASP ASP F . n B 1 209 GLY 209 209 209 GLY GLY F . n B 1 210 ILE 210 210 210 ILE ILE F . n B 1 211 ALA 211 211 211 ALA ALA F . n B 1 212 PHE 212 212 212 PHE PHE F . n B 1 213 PHE 213 213 213 PHE PHE F . n B 1 214 ILE 214 214 214 ILE ILE F . n B 1 215 SER 215 215 215 SER SER F . n B 1 216 ASN 216 216 216 ASN ASN F . n B 1 217 ILE 217 217 217 ILE ILE F . n B 1 218 ASP 218 218 218 ASP ASP F . n B 1 219 SER 219 219 219 SER SER F . n B 1 220 SER 220 220 220 SER SER F . n B 1 221 ILE 221 221 221 ILE ILE F . n B 1 222 PRO 222 222 222 PRO PRO F . n B 1 223 SER 223 223 223 SER SER F . n B 1 224 GLY 224 224 224 GLY GLY F . n B 1 225 SER 225 225 225 SER SER F . n B 1 226 THR 226 226 226 THR THR F . n B 1 227 GLY 227 227 227 GLY GLY F . n B 1 228 ARG 228 228 228 ARG ARG F . n B 1 229 LEU 229 229 229 LEU LEU F . n B 1 230 LEU 230 230 230 LEU LEU F . n B 1 231 GLY 231 231 231 GLY GLY F . n B 1 232 LEU 232 232 232 LEU LEU F . n B 1 233 PHE 233 233 233 PHE PHE F . n B 1 234 PRO 234 234 234 PRO PRO F . n B 1 235 ASP 235 235 235 ASP ASP F . n B 1 236 ALA 236 236 236 ALA ALA F . n B 1 237 ASN 237 237 237 ASN ASN F . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN 1 1001 1001 ZN ZN E . D 3 CA 1 1002 1003 CA CA E . E 2 ZN 1 1001 1001 ZN ZN F . F 3 CA 1 1002 1003 CA CA F . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 E ASP 145 ? CG ? A ASP 145 CG 2 1 Y 1 E ASP 145 ? OD1 ? A ASP 145 OD1 3 1 Y 1 E ASP 145 ? OD2 ? A ASP 145 OD2 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9B34 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 9B34 _struct.title ;Structure of concanavalin A (ConA) dimer from the open-state structure of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to two ConA dimers. Type I interface between GluK2 ligand-binding domain and ConA ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9B34 _struct_keywords.text 'kainate receptor, GluK2, glutamate, positive allosteric modulator, BPAM344, open, concanavalin A, ConA, MEMBRANE PROTEIN' _struct_keywords.pdbx_keywords 'MEMBRANE PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP CONA_CANEN P02866 ? 1 ;ADTIVAVELDTYPNTDIGDPSYPHIGIDIKSVRSKKTAKWNMQNGKVGTAHIIYNSVDKRLSAVVSYPNADSATVSYDVD LDNVLPEWVRVGLSASTGLYKETNTILSWSFTSKLKSN ; 164 2 UNP CONA_CANEN P02866 ? 1 ;STHETNALHFMFNQFSKDQKDLILQGDATTGTDGNLELTRVSSNGSPQGSSVGRALFYAPVHIWESSAVVASFEATFTFL IKSPDSHPADGIAFFISNIDSSIPSGSTGRLLGLFPDAN ; 30 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9B34 E 1 ? 118 ? P02866 164 ? 281 ? 1 118 2 2 9B34 E 119 ? 237 ? P02866 30 ? 148 ? 119 237 3 1 9B34 F 1 ? 118 ? P02866 164 ? 281 ? 1 118 4 2 9B34 F 119 ? 237 ? P02866 30 ? 148 ? 119 237 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id AA1 _struct_conf.beg_label_comp_id ASN _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 14 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id GLY _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 18 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ASN _struct_conf.beg_auth_asym_id E _struct_conf.beg_auth_seq_id 14 _struct_conf.end_auth_comp_id GLY _struct_conf.end_auth_asym_id E _struct_conf.end_auth_seq_id 18 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A GLU 8 OE1 ? ? ? 1_555 C ZN . ZN ? ? E GLU 8 E ZN 1001 1_555 ? ? ? ? ? ? ? 2.565 ? ? metalc2 metalc ? ? A ASP 10 OD2 ? ? ? 1_555 C ZN . ZN ? ? E ASP 10 E ZN 1001 1_555 ? ? ? ? ? ? ? 2.121 ? ? metalc3 metalc ? ? A ASP 10 OD1 ? ? ? 1_555 D CA . CA ? ? E ASP 10 E CA 1002 1_555 ? ? ? ? ? ? ? 3.093 ? ? metalc4 metalc ? ? A ASP 10 OD2 ? ? ? 1_555 D CA . CA ? ? E ASP 10 E CA 1002 1_555 ? ? ? ? ? ? ? 2.472 ? ? metalc5 metalc ? ? A ASN 14 OD1 ? ? ? 1_555 D CA . CA ? ? E ASN 14 E CA 1002 1_555 ? ? ? ? ? ? ? 2.498 ? ? metalc6 metalc ? ? A ASP 19 OD1 ? ? ? 1_555 C ZN . ZN ? ? E ASP 19 E ZN 1001 1_555 ? ? ? ? ? ? ? 2.133 ? ? metalc7 metalc ? ? A ASP 19 OD2 ? ? ? 1_555 C ZN . ZN ? ? E ASP 19 E ZN 1001 1_555 ? ? ? ? ? ? ? 2.597 ? ? metalc8 metalc ? ? A ASP 19 OD2 ? ? ? 1_555 D CA . CA ? ? E ASP 19 E CA 1002 1_555 ? ? ? ? ? ? ? 2.936 ? ? metalc9 metalc ? ? A HIS 24 NE2 ? ? ? 1_555 C ZN . ZN ? ? E HIS 24 E ZN 1001 1_555 ? ? ? ? ? ? ? 2.315 ? ? metalc10 metalc ? ? B ASP 10 OD2 ? ? ? 1_555 E ZN . ZN ? ? F ASP 10 F ZN 1001 1_555 ? ? ? ? ? ? ? 2.151 ? ? metalc11 metalc ? ? B ASP 10 OD1 ? ? ? 1_555 F CA . CA ? ? F ASP 10 F CA 1002 1_555 ? ? ? ? ? ? ? 2.498 ? ? metalc12 metalc ? ? B ASP 10 OD2 ? ? ? 1_555 F CA . CA ? ? F ASP 10 F CA 1002 1_555 ? ? ? ? ? ? ? 2.588 ? ? metalc13 metalc ? ? B TYR 12 O ? ? ? 1_555 F CA . CA ? ? F TYR 12 F CA 1002 1_555 ? ? ? ? ? ? ? 2.600 ? ? metalc14 metalc ? ? B ASN 14 OD1 ? ? ? 1_555 F CA . CA ? ? F ASN 14 F CA 1002 1_555 ? ? ? ? ? ? ? 2.614 ? ? metalc15 metalc ? ? B ASP 19 OD1 ? ? ? 1_555 E ZN . ZN ? ? F ASP 19 F ZN 1001 1_555 ? ? ? ? ? ? ? 2.181 ? ? metalc16 metalc ? ? B HIS 24 NE2 ? ? ? 1_555 E ZN . ZN ? ? F HIS 24 F ZN 1001 1_555 ? ? ? ? ? ? ? 2.264 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OE1 ? A GLU 8 ? E GLU 8 ? 1_555 ZN ? C ZN . ? E ZN 1001 ? 1_555 OD2 ? A ASP 10 ? E ASP 10 ? 1_555 113.9 ? 2 OE1 ? A GLU 8 ? E GLU 8 ? 1_555 ZN ? C ZN . ? E ZN 1001 ? 1_555 OD1 ? A ASP 19 ? E ASP 19 ? 1_555 99.4 ? 3 OD2 ? A ASP 10 ? E ASP 10 ? 1_555 ZN ? C ZN . ? E ZN 1001 ? 1_555 OD1 ? A ASP 19 ? E ASP 19 ? 1_555 122.1 ? 4 OE1 ? A GLU 8 ? E GLU 8 ? 1_555 ZN ? C ZN . ? E ZN 1001 ? 1_555 OD2 ? A ASP 19 ? E ASP 19 ? 1_555 102.4 ? 5 OD2 ? A ASP 10 ? E ASP 10 ? 1_555 ZN ? C ZN . ? E ZN 1001 ? 1_555 OD2 ? A ASP 19 ? E ASP 19 ? 1_555 72.7 ? 6 OD1 ? A ASP 19 ? E ASP 19 ? 1_555 ZN ? C ZN . ? E ZN 1001 ? 1_555 OD2 ? A ASP 19 ? E ASP 19 ? 1_555 54.1 ? 7 OE1 ? A GLU 8 ? E GLU 8 ? 1_555 ZN ? C ZN . ? E ZN 1001 ? 1_555 NE2 ? A HIS 24 ? E HIS 24 ? 1_555 114.1 ? 8 OD2 ? A ASP 10 ? E ASP 10 ? 1_555 ZN ? C ZN . ? E ZN 1001 ? 1_555 NE2 ? A HIS 24 ? E HIS 24 ? 1_555 118.6 ? 9 OD1 ? A ASP 19 ? E ASP 19 ? 1_555 ZN ? C ZN . ? E ZN 1001 ? 1_555 NE2 ? A HIS 24 ? E HIS 24 ? 1_555 84.3 ? 10 OD2 ? A ASP 19 ? E ASP 19 ? 1_555 ZN ? C ZN . ? E ZN 1001 ? 1_555 NE2 ? A HIS 24 ? E HIS 24 ? 1_555 128.6 ? 11 OD1 ? A ASP 10 ? E ASP 10 ? 1_555 CA ? D CA . ? E CA 1002 ? 1_555 OD2 ? A ASP 10 ? E ASP 10 ? 1_555 44.4 ? 12 OD1 ? A ASP 10 ? E ASP 10 ? 1_555 CA ? D CA . ? E CA 1002 ? 1_555 OD1 ? A ASN 14 ? E ASN 14 ? 1_555 83.8 ? 13 OD2 ? A ASP 10 ? E ASP 10 ? 1_555 CA ? D CA . ? E CA 1002 ? 1_555 OD1 ? A ASN 14 ? E ASN 14 ? 1_555 76.2 ? 14 OD1 ? A ASP 10 ? E ASP 10 ? 1_555 CA ? D CA . ? E CA 1002 ? 1_555 OD2 ? A ASP 19 ? E ASP 19 ? 1_555 105.6 ? 15 OD2 ? A ASP 10 ? E ASP 10 ? 1_555 CA ? D CA . ? E CA 1002 ? 1_555 OD2 ? A ASP 19 ? E ASP 19 ? 1_555 62.3 ? 16 OD1 ? A ASN 14 ? E ASN 14 ? 1_555 CA ? D CA . ? E CA 1002 ? 1_555 OD2 ? A ASP 19 ? E ASP 19 ? 1_555 67.2 ? 17 OD2 ? B ASP 10 ? F ASP 10 ? 1_555 ZN ? E ZN . ? F ZN 1001 ? 1_555 OD1 ? B ASP 19 ? F ASP 19 ? 1_555 112.8 ? 18 OD2 ? B ASP 10 ? F ASP 10 ? 1_555 ZN ? E ZN . ? F ZN 1001 ? 1_555 NE2 ? B HIS 24 ? F HIS 24 ? 1_555 136.9 ? 19 OD1 ? B ASP 19 ? F ASP 19 ? 1_555 ZN ? E ZN . ? F ZN 1001 ? 1_555 NE2 ? B HIS 24 ? F HIS 24 ? 1_555 89.8 ? 20 OD1 ? B ASP 10 ? F ASP 10 ? 1_555 CA ? F CA . ? F CA 1002 ? 1_555 OD2 ? B ASP 10 ? F ASP 10 ? 1_555 50.8 ? 21 OD1 ? B ASP 10 ? F ASP 10 ? 1_555 CA ? F CA . ? F CA 1002 ? 1_555 O ? B TYR 12 ? F TYR 12 ? 1_555 89.2 ? 22 OD2 ? B ASP 10 ? F ASP 10 ? 1_555 CA ? F CA . ? F CA 1002 ? 1_555 O ? B TYR 12 ? F TYR 12 ? 1_555 78.8 ? 23 OD1 ? B ASP 10 ? F ASP 10 ? 1_555 CA ? F CA . ? F CA 1002 ? 1_555 OD1 ? B ASN 14 ? F ASN 14 ? 1_555 151.7 ? 24 OD2 ? B ASP 10 ? F ASP 10 ? 1_555 CA ? F CA . ? F CA 1002 ? 1_555 OD1 ? B ASN 14 ? F ASN 14 ? 1_555 103.6 ? 25 O ? B TYR 12 ? F TYR 12 ? 1_555 CA ? F CA . ? F CA 1002 ? 1_555 OD1 ? B ASN 14 ? F ASN 14 ? 1_555 71.7 ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 4 ? AA3 ? 3 ? AA4 ? 3 ? AA5 ? 3 ? AA6 ? 3 ? AA7 ? 7 ? AA8 ? 6 ? AA9 ? 6 ? AB1 ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA5 1 2 ? anti-parallel AA5 2 3 ? anti-parallel AA6 1 2 ? anti-parallel AA6 2 3 ? anti-parallel AA7 1 2 ? anti-parallel AA7 2 3 ? anti-parallel AA7 3 4 ? anti-parallel AA7 4 5 ? anti-parallel AA7 5 6 ? anti-parallel AA7 6 7 ? anti-parallel AA8 1 2 ? anti-parallel AA8 2 3 ? anti-parallel AA8 3 4 ? anti-parallel AA8 4 5 ? anti-parallel AA8 5 6 ? anti-parallel AA9 1 2 ? anti-parallel AA9 2 3 ? anti-parallel AA9 3 4 ? anti-parallel AA9 4 5 ? anti-parallel AA9 5 6 ? anti-parallel AB1 1 2 ? anti-parallel AB1 2 3 ? anti-parallel AB1 3 4 ? anti-parallel AB1 4 5 ? anti-parallel AB1 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 5 ? ALA A 6 ? VAL E 5 ALA E 6 AA1 2 ILE A 210 ? ASN A 216 ? ILE E 210 ASN E 216 AA1 3 TRP A 88 ? SER A 96 ? TRP E 88 SER E 96 AA1 4 VAL A 170 ? LEU A 174 ? VAL E 170 LEU E 174 AA1 5 GLN A 143 ? GLY A 144 ? GLN E 143 GLY E 144 AA2 1 VAL A 5 ? ALA A 6 ? VAL E 5 ALA E 6 AA2 2 ILE A 210 ? ASN A 216 ? ILE E 210 ASN E 216 AA2 3 TRP A 88 ? SER A 96 ? TRP E 88 SER E 96 AA2 4 VAL A 179 ? HIS A 180 ? VAL E 179 HIS E 180 AA3 1 LEU A 9 ? ASP A 10 ? LEU E 9 ASP E 10 AA3 2 HIS A 24 ? ILE A 25 ? HIS E 24 ILE E 25 AA3 3 ALA A 38 ? LYS A 39 ? ALA E 38 LYS E 39 AA4 1 THR A 49 ? TYR A 54 ? THR E 49 TYR E 54 AA4 2 ARG A 60 ? SER A 66 ? ARG E 60 SER E 66 AA4 3 TYR A 77 ? ASP A 78 ? TYR E 77 ASP E 78 AA5 1 LEU A 154 ? GLU A 155 ? LEU E 154 GLU E 155 AA5 2 THR A 105 ? ILE A 106 ? THR E 105 ILE E 106 AA5 3 PHE A 197 ? LEU A 198 ? PHE E 197 LEU E 198 AA6 1 PHE A 128 ? PHE A 130 ? PHE E 128 PHE E 130 AA6 2 TRP A 109 ? THR A 112 ? TRP E 109 THR E 112 AA6 3 GLU A 192 ? THR A 194 ? GLU E 192 THR E 194 AA7 1 LYS B 36 ? LYS B 39 ? LYS F 36 LYS F 39 AA7 2 HIS B 24 ? ILE B 29 ? HIS F 24 ILE F 29 AA7 3 VAL B 5 ? GLU B 8 ? VAL F 5 GLU F 8 AA7 4 ILE B 210 ? ASN B 216 ? ILE F 210 ASN F 216 AA7 5 TRP B 88 ? THR B 97 ? TRP F 88 THR F 97 AA7 6 SER B 169 ? PHE B 175 ? SER F 169 PHE F 175 AA7 7 LEU B 140 ? ILE B 141 ? LEU F 140 ILE F 141 AA8 1 LYS B 36 ? LYS B 39 ? LYS F 36 LYS F 39 AA8 2 HIS B 24 ? ILE B 29 ? HIS F 24 ILE F 29 AA8 3 VAL B 5 ? GLU B 8 ? VAL F 5 GLU F 8 AA8 4 ILE B 210 ? ASN B 216 ? ILE F 210 ASN F 216 AA8 5 TRP B 88 ? THR B 97 ? TRP F 88 THR F 97 AA8 6 VAL B 179 ? HIS B 180 ? VAL F 179 HIS F 180 AA9 1 TYR B 77 ? ASP B 78 ? TYR F 77 ASP F 78 AA9 2 ARG B 60 ? SER B 66 ? ARG F 60 SER F 66 AA9 3 THR B 49 ? TYR B 54 ? THR F 49 TYR F 54 AA9 4 GLU B 192 ? LEU B 198 ? GLU F 192 LEU F 198 AA9 5 THR B 105 ? THR B 112 ? THR F 105 THR F 112 AA9 6 PHE B 128 ? PHE B 130 ? PHE F 128 PHE F 130 AB1 1 TYR B 77 ? ASP B 78 ? TYR F 77 ASP F 78 AB1 2 ARG B 60 ? SER B 66 ? ARG F 60 SER F 66 AB1 3 THR B 49 ? TYR B 54 ? THR F 49 TYR F 54 AB1 4 GLU B 192 ? LEU B 198 ? GLU F 192 LEU F 198 AB1 5 THR B 105 ? THR B 112 ? THR F 105 THR F 112 AB1 6 LEU B 154 ? GLU B 155 ? LEU F 154 GLU F 155 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL A 5 ? N VAL E 5 O ILE A 214 ? O ILE E 214 AA1 2 3 O ALA A 211 ? O ALA E 211 N SER A 94 ? N SER E 94 AA1 3 4 N LEU A 93 ? N LEU E 93 O ALA A 173 ? O ALA E 173 AA1 4 5 N ARG A 172 ? N ARG E 172 O GLN A 143 ? O GLN E 143 AA2 1 2 N VAL A 5 ? N VAL E 5 O ILE A 214 ? O ILE E 214 AA2 2 3 O ALA A 211 ? O ALA E 211 N SER A 94 ? N SER E 94 AA2 3 4 N VAL A 89 ? N VAL E 89 O VAL A 179 ? O VAL E 179 AA3 1 2 N ASP A 10 ? N ASP E 10 O HIS A 24 ? O HIS E 24 AA3 2 3 N ILE A 25 ? N ILE E 25 O ALA A 38 ? O ALA E 38 AA4 1 2 N HIS A 51 ? N HIS E 51 O VAL A 64 ? O VAL E 64 AA4 2 3 N LEU A 61 ? N LEU E 61 O TYR A 77 ? O TYR E 77 AA5 1 2 O LEU A 154 ? O LEU E 154 N ILE A 106 ? N ILE E 106 AA5 2 3 N THR A 105 ? N THR E 105 O LEU A 198 ? O LEU E 198 AA6 1 2 O PHE A 130 ? O PHE E 130 N TRP A 109 ? N TRP E 109 AA6 2 3 N SER A 110 ? N SER E 110 O THR A 194 ? O THR E 194 AA7 1 2 O ALA B 38 ? O ALA F 38 N ILE B 25 ? N ILE F 25 AA7 2 3 O GLY B 26 ? O GLY F 26 N GLU B 8 ? N GLU F 8 AA7 3 4 N VAL B 5 ? N VAL F 5 O ILE B 214 ? O ILE F 214 AA7 4 5 O ALA B 211 ? O ALA F 211 N SER B 94 ? N SER F 94 AA7 5 6 N ALA B 95 ? N ALA F 95 O GLY B 171 ? O GLY F 171 AA7 6 7 O LEU B 174 ? O LEU F 174 N ILE B 141 ? N ILE F 141 AA8 1 2 O ALA B 38 ? O ALA F 38 N ILE B 25 ? N ILE F 25 AA8 2 3 O GLY B 26 ? O GLY F 26 N GLU B 8 ? N GLU F 8 AA8 3 4 N VAL B 5 ? N VAL F 5 O ILE B 214 ? O ILE F 214 AA8 4 5 O ALA B 211 ? O ALA F 211 N SER B 94 ? N SER F 94 AA8 5 6 N VAL B 89 ? N VAL F 89 O VAL B 179 ? O VAL F 179 AA9 1 2 O TYR B 77 ? O TYR F 77 N LEU B 61 ? N LEU F 61 AA9 2 3 O SER B 66 ? O SER F 66 N THR B 49 ? N THR F 49 AA9 3 4 N ALA B 50 ? N ALA F 50 O PHE B 195 ? O PHE F 195 AA9 4 5 O GLU B 192 ? O GLU F 192 N THR B 112 ? N THR F 112 AA9 5 6 N PHE B 111 ? N PHE F 111 O PHE B 128 ? O PHE F 128 AB1 1 2 O TYR B 77 ? O TYR F 77 N LEU B 61 ? N LEU F 61 AB1 2 3 O SER B 66 ? O SER F 66 N THR B 49 ? N THR F 49 AB1 3 4 N ALA B 50 ? N ALA F 50 O PHE B 195 ? O PHE F 195 AB1 4 5 O GLU B 192 ? O GLU F 192 N THR B 112 ? N THR F 112 AB1 5 6 N ILE B 106 ? N ILE F 106 O LEU B 154 ? O LEU F 154 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N E GLY 48 ? ? CA E GLY 48 ? ? C E GLY 48 ? ? 138.50 113.10 25.40 2.50 N 2 1 N F GLY 48 ? ? CA F GLY 48 ? ? C F GLY 48 ? ? 133.23 113.10 20.13 2.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN E 44 ? ? -78.30 -159.32 2 1 LYS E 59 ? ? 45.83 26.47 3 1 LEU E 99 ? ? 65.48 -15.50 4 1 PHE E 111 ? ? -172.43 145.27 5 1 LYS E 116 ? ? 31.17 67.68 6 1 GLU E 122 ? ? 59.85 70.90 7 1 LEU E 126 ? ? -143.62 47.32 8 1 PHE E 130 ? ? -65.78 77.42 9 1 THR E 150 ? ? 70.36 -7.84 10 1 LEU E 156 ? ? -91.99 45.23 11 1 SER E 161 ? ? -94.76 58.74 12 1 PRO E 165 ? ? -84.31 43.69 13 1 GLN E 166 ? ? 56.50 71.41 14 1 ILE E 181 ? ? -129.03 -56.01 15 1 TRP E 182 ? ? -39.95 -77.46 16 1 GLU E 183 ? ? -137.02 -78.63 17 1 SER E 184 ? ? 54.75 -26.31 18 1 SER E 185 ? ? -156.44 62.27 19 1 ALA E 186 ? ? -40.59 169.97 20 1 VAL E 187 ? ? -90.79 35.17 21 1 ALA E 189 ? ? -65.88 81.96 22 1 SER E 204 ? ? -142.36 33.53 23 1 HIS E 205 ? ? 54.80 80.02 24 1 ALA E 207 ? ? -161.00 104.89 25 1 ASP E 208 ? ? -161.20 15.19 26 1 ASN F 44 ? ? -77.03 -160.33 27 1 ASN F 69 ? ? 36.52 42.97 28 1 ALA F 70 ? ? -127.05 -169.94 29 1 ALA F 73 ? ? -104.01 78.27 30 1 LEU F 99 ? ? 67.09 -7.27 31 1 TYR F 100 ? ? -125.40 -168.50 32 1 THR F 112 ? ? -161.59 116.49 33 1 LYS F 116 ? ? 33.17 77.35 34 1 SER F 119 ? ? -25.41 -43.29 35 1 HIS F 121 ? ? -94.60 50.38 36 1 GLU F 122 ? ? 59.58 73.93 37 1 LEU F 126 ? ? -145.00 45.80 38 1 MET F 129 ? ? -141.58 59.39 39 1 PHE F 130 ? ? -69.20 81.36 40 1 THR F 150 ? ? 71.47 -7.79 41 1 ASP F 151 ? ? -174.04 -175.72 42 1 LEU F 156 ? ? -92.05 46.16 43 1 SER F 160 ? ? 82.69 13.41 44 1 PRO F 165 ? ? -84.33 40.20 45 1 GLN F 166 ? ? 44.56 71.25 46 1 ILE F 181 ? ? -128.69 -54.67 47 1 TRP F 182 ? ? -35.54 -77.87 48 1 GLU F 183 ? ? -132.98 -74.89 49 1 SER F 184 ? ? 57.43 -22.17 50 1 SER F 185 ? ? -152.92 57.01 51 1 ALA F 186 ? ? -35.42 160.09 52 1 VAL F 187 ? ? -91.60 32.51 53 1 VAL F 188 ? ? -69.75 8.39 54 1 ALA F 189 ? ? -66.50 94.94 55 1 SER F 204 ? ? -140.38 18.01 56 1 HIS F 205 ? ? 50.83 71.57 57 1 ASP F 208 ? ? -151.14 -2.26 58 1 LEU F 230 ? ? 62.68 61.36 59 1 LEU F 232 ? ? -131.38 -35.88 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 VAL E 47 ? ? GLY E 48 ? ? 121.49 2 1 LEU E 115 ? ? LYS E 116 ? ? 141.76 3 1 ASN E 118 ? ? SER E 119 ? ? -149.22 4 1 ILE E 181 ? ? TRP E 182 ? ? -138.91 5 1 TRP E 182 ? ? GLU E 183 ? ? 147.38 6 1 SER E 185 ? ? ALA E 186 ? ? -134.26 7 1 ALA E 186 ? ? VAL E 187 ? ? -128.27 8 1 ALA E 207 ? ? ASP E 208 ? ? 109.71 9 1 VAL F 47 ? ? GLY F 48 ? ? 117.97 10 1 LEU F 115 ? ? LYS F 116 ? ? 140.85 11 1 ASN F 118 ? ? SER F 119 ? ? -134.43 12 1 ILE F 181 ? ? TRP F 182 ? ? -130.10 13 1 TRP F 182 ? ? GLU F 183 ? ? 137.02 14 1 SER F 185 ? ? ALA F 186 ? ? -129.11 15 1 ALA F 186 ? ? VAL F 187 ? ? -139.95 16 1 ALA F 207 ? ? ASP F 208 ? ? 145.78 # _pdbx_entry_details.entry_id 9B34 _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9B34 _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space REAL _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 9B34 _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.58 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 163519 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 8.0 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source NATURAL _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'Concanavalin-A dimer' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_image_scans.entry_id 9B34 _em_image_scans.id 1 _em_image_scans.number_digital_images ? _em_image_scans.details ? _em_image_scans.scanner_model ? _em_image_scans.sampling_size ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.citation_id ? _em_image_scans.dimension_height 4092 _em_image_scans.dimension_width 5760 _em_image_scans.frames_per_image ? _em_image_scans.image_recording_id 1 _em_image_scans.used_frames_per_image ? # _em_imaging.entry_id 9B34 _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_defocus_max 2000 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material GOLD _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type 'UltrAuFoil R1.2/1.3' _em_sample_support.details ? _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 9B34 _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9B34 _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CA CA CA N N 74 GLN N N N N 75 GLN CA C N S 76 GLN C C N N 77 GLN O O N N 78 GLN CB C N N 79 GLN CG C N N 80 GLN CD C N N 81 GLN OE1 O N N 82 GLN NE2 N N N 83 GLN OXT O N N 84 GLN H H N N 85 GLN H2 H N N 86 GLN HA H N N 87 GLN HB2 H N N 88 GLN HB3 H N N 89 GLN HG2 H N N 90 GLN HG3 H N N 91 GLN HE21 H N N 92 GLN HE22 H N N 93 GLN HXT H N N 94 GLU N N N N 95 GLU CA C N S 96 GLU C C N N 97 GLU O O N N 98 GLU CB C N N 99 GLU CG C N N 100 GLU CD C N N 101 GLU OE1 O N N 102 GLU OE2 O N N 103 GLU OXT O N N 104 GLU H H N N 105 GLU H2 H N N 106 GLU HA H N N 107 GLU HB2 H N N 108 GLU HB3 H N N 109 GLU HG2 H N N 110 GLU HG3 H N N 111 GLU HE2 H N N 112 GLU HXT H N N 113 GLY N N N N 114 GLY CA C N N 115 GLY C C N N 116 GLY O O N N 117 GLY OXT O N N 118 GLY H H N N 119 GLY H2 H N N 120 GLY HA2 H N N 121 GLY HA3 H N N 122 GLY HXT H N N 123 HIS N N N N 124 HIS CA C N S 125 HIS C C N N 126 HIS O O N N 127 HIS CB C N N 128 HIS CG C Y N 129 HIS ND1 N Y N 130 HIS CD2 C Y N 131 HIS CE1 C Y N 132 HIS NE2 N Y N 133 HIS OXT O N N 134 HIS H H N N 135 HIS H2 H N N 136 HIS HA H N N 137 HIS HB2 H N N 138 HIS HB3 H N N 139 HIS HD1 H N N 140 HIS HD2 H N N 141 HIS HE1 H N N 142 HIS HE2 H N N 143 HIS HXT H N N 144 ILE N N N N 145 ILE CA C N S 146 ILE C C N N 147 ILE O O N N 148 ILE CB C N S 149 ILE CG1 C N N 150 ILE CG2 C N N 151 ILE CD1 C N N 152 ILE OXT O N N 153 ILE H H N N 154 ILE H2 H N N 155 ILE HA H N N 156 ILE HB H N N 157 ILE HG12 H N N 158 ILE HG13 H N N 159 ILE HG21 H N N 160 ILE HG22 H N N 161 ILE HG23 H N N 162 ILE HD11 H N N 163 ILE HD12 H N N 164 ILE HD13 H N N 165 ILE HXT H N N 166 LEU N N N N 167 LEU CA C N S 168 LEU C C N N 169 LEU O O N N 170 LEU CB C N N 171 LEU CG C N N 172 LEU CD1 C N N 173 LEU CD2 C N N 174 LEU OXT O N N 175 LEU H H N N 176 LEU H2 H N N 177 LEU HA H N N 178 LEU HB2 H N N 179 LEU HB3 H N N 180 LEU HG H N N 181 LEU HD11 H N N 182 LEU HD12 H N N 183 LEU HD13 H N N 184 LEU HD21 H N N 185 LEU HD22 H N N 186 LEU HD23 H N N 187 LEU HXT H N N 188 LYS N N N N 189 LYS CA C N S 190 LYS C C N N 191 LYS O O N N 192 LYS CB C N N 193 LYS CG C N N 194 LYS CD C N N 195 LYS CE C N N 196 LYS NZ N N N 197 LYS OXT O N N 198 LYS H H N N 199 LYS H2 H N N 200 LYS HA H N N 201 LYS HB2 H N N 202 LYS HB3 H N N 203 LYS HG2 H N N 204 LYS HG3 H N N 205 LYS HD2 H N N 206 LYS HD3 H N N 207 LYS HE2 H N N 208 LYS HE3 H N N 209 LYS HZ1 H N N 210 LYS HZ2 H N N 211 LYS HZ3 H N N 212 LYS HXT H N N 213 MET N N N N 214 MET CA C N S 215 MET C C N N 216 MET O O N N 217 MET CB C N N 218 MET CG C N N 219 MET SD S N N 220 MET CE C N N 221 MET OXT O N N 222 MET H H N N 223 MET H2 H N N 224 MET HA H N N 225 MET HB2 H N N 226 MET HB3 H N N 227 MET HG2 H N N 228 MET HG3 H N N 229 MET HE1 H N N 230 MET HE2 H N N 231 MET HE3 H N N 232 MET HXT H N N 233 PHE N N N N 234 PHE CA C N S 235 PHE C C N N 236 PHE O O N N 237 PHE CB C N N 238 PHE CG C Y N 239 PHE CD1 C Y N 240 PHE CD2 C Y N 241 PHE CE1 C Y N 242 PHE CE2 C Y N 243 PHE CZ C Y N 244 PHE OXT O N N 245 PHE H H N N 246 PHE H2 H N N 247 PHE HA H N N 248 PHE HB2 H N N 249 PHE HB3 H N N 250 PHE HD1 H N N 251 PHE HD2 H N N 252 PHE HE1 H N N 253 PHE HE2 H N N 254 PHE HZ H N N 255 PHE HXT H N N 256 PRO N N N N 257 PRO CA C N S 258 PRO C C N N 259 PRO O O N N 260 PRO CB C N N 261 PRO CG C N N 262 PRO CD C N N 263 PRO OXT O N N 264 PRO H H N N 265 PRO HA H N N 266 PRO HB2 H N N 267 PRO HB3 H N N 268 PRO HG2 H N N 269 PRO HG3 H N N 270 PRO HD2 H N N 271 PRO HD3 H N N 272 PRO HXT H N N 273 SER N N N N 274 SER CA C N S 275 SER C C N N 276 SER O O N N 277 SER CB C N N 278 SER OG O N N 279 SER OXT O N N 280 SER H H N N 281 SER H2 H N N 282 SER HA H N N 283 SER HB2 H N N 284 SER HB3 H N N 285 SER HG H N N 286 SER HXT H N N 287 THR N N N N 288 THR CA C N S 289 THR C C N N 290 THR O O N N 291 THR CB C N R 292 THR OG1 O N N 293 THR CG2 C N N 294 THR OXT O N N 295 THR H H N N 296 THR H2 H N N 297 THR HA H N N 298 THR HB H N N 299 THR HG1 H N N 300 THR HG21 H N N 301 THR HG22 H N N 302 THR HG23 H N N 303 THR HXT H N N 304 TRP N N N N 305 TRP CA C N S 306 TRP C C N N 307 TRP O O N N 308 TRP CB C N N 309 TRP CG C Y N 310 TRP CD1 C Y N 311 TRP CD2 C Y N 312 TRP NE1 N Y N 313 TRP CE2 C Y N 314 TRP CE3 C Y N 315 TRP CZ2 C Y N 316 TRP CZ3 C Y N 317 TRP CH2 C Y N 318 TRP OXT O N N 319 TRP H H N N 320 TRP H2 H N N 321 TRP HA H N N 322 TRP HB2 H N N 323 TRP HB3 H N N 324 TRP HD1 H N N 325 TRP HE1 H N N 326 TRP HE3 H N N 327 TRP HZ2 H N N 328 TRP HZ3 H N N 329 TRP HH2 H N N 330 TRP HXT H N N 331 TYR N N N N 332 TYR CA C N S 333 TYR C C N N 334 TYR O O N N 335 TYR CB C N N 336 TYR CG C Y N 337 TYR CD1 C Y N 338 TYR CD2 C Y N 339 TYR CE1 C Y N 340 TYR CE2 C Y N 341 TYR CZ C Y N 342 TYR OH O N N 343 TYR OXT O N N 344 TYR H H N N 345 TYR H2 H N N 346 TYR HA H N N 347 TYR HB2 H N N 348 TYR HB3 H N N 349 TYR HD1 H N N 350 TYR HD2 H N N 351 TYR HE1 H N N 352 TYR HE2 H N N 353 TYR HH H N N 354 TYR HXT H N N 355 VAL N N N N 356 VAL CA C N S 357 VAL C C N N 358 VAL O O N N 359 VAL CB C N N 360 VAL CG1 C N N 361 VAL CG2 C N N 362 VAL OXT O N N 363 VAL H H N N 364 VAL H2 H N N 365 VAL HA H N N 366 VAL HB H N N 367 VAL HG11 H N N 368 VAL HG12 H N N 369 VAL HG13 H N N 370 VAL HG21 H N N 371 VAL HG22 H N N 372 VAL HG23 H N N 373 VAL HXT H N N 374 ZN ZN ZN N N 375 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 ILE N CA sing N N 137 ILE N H sing N N 138 ILE N H2 sing N N 139 ILE CA C sing N N 140 ILE CA CB sing N N 141 ILE CA HA sing N N 142 ILE C O doub N N 143 ILE C OXT sing N N 144 ILE CB CG1 sing N N 145 ILE CB CG2 sing N N 146 ILE CB HB sing N N 147 ILE CG1 CD1 sing N N 148 ILE CG1 HG12 sing N N 149 ILE CG1 HG13 sing N N 150 ILE CG2 HG21 sing N N 151 ILE CG2 HG22 sing N N 152 ILE CG2 HG23 sing N N 153 ILE CD1 HD11 sing N N 154 ILE CD1 HD12 sing N N 155 ILE CD1 HD13 sing N N 156 ILE OXT HXT sing N N 157 LEU N CA sing N N 158 LEU N H sing N N 159 LEU N H2 sing N N 160 LEU CA C sing N N 161 LEU CA CB sing N N 162 LEU CA HA sing N N 163 LEU C O doub N N 164 LEU C OXT sing N N 165 LEU CB CG sing N N 166 LEU CB HB2 sing N N 167 LEU CB HB3 sing N N 168 LEU CG CD1 sing N N 169 LEU CG CD2 sing N N 170 LEU CG HG sing N N 171 LEU CD1 HD11 sing N N 172 LEU CD1 HD12 sing N N 173 LEU CD1 HD13 sing N N 174 LEU CD2 HD21 sing N N 175 LEU CD2 HD22 sing N N 176 LEU CD2 HD23 sing N N 177 LEU OXT HXT sing N N 178 LYS N CA sing N N 179 LYS N H sing N N 180 LYS N H2 sing N N 181 LYS CA C sing N N 182 LYS CA CB sing N N 183 LYS CA HA sing N N 184 LYS C O doub N N 185 LYS C OXT sing N N 186 LYS CB CG sing N N 187 LYS CB HB2 sing N N 188 LYS CB HB3 sing N N 189 LYS CG CD sing N N 190 LYS CG HG2 sing N N 191 LYS CG HG3 sing N N 192 LYS CD CE sing N N 193 LYS CD HD2 sing N N 194 LYS CD HD3 sing N N 195 LYS CE NZ sing N N 196 LYS CE HE2 sing N N 197 LYS CE HE3 sing N N 198 LYS NZ HZ1 sing N N 199 LYS NZ HZ2 sing N N 200 LYS NZ HZ3 sing N N 201 LYS OXT HXT sing N N 202 MET N CA sing N N 203 MET N H sing N N 204 MET N H2 sing N N 205 MET CA C sing N N 206 MET CA CB sing N N 207 MET CA HA sing N N 208 MET C O doub N N 209 MET C OXT sing N N 210 MET CB CG sing N N 211 MET CB HB2 sing N N 212 MET CB HB3 sing N N 213 MET CG SD sing N N 214 MET CG HG2 sing N N 215 MET CG HG3 sing N N 216 MET SD CE sing N N 217 MET CE HE1 sing N N 218 MET CE HE2 sing N N 219 MET CE HE3 sing N N 220 MET OXT HXT sing N N 221 PHE N CA sing N N 222 PHE N H sing N N 223 PHE N H2 sing N N 224 PHE CA C sing N N 225 PHE CA CB sing N N 226 PHE CA HA sing N N 227 PHE C O doub N N 228 PHE C OXT sing N N 229 PHE CB CG sing N N 230 PHE CB HB2 sing N N 231 PHE CB HB3 sing N N 232 PHE CG CD1 doub Y N 233 PHE CG CD2 sing Y N 234 PHE CD1 CE1 sing Y N 235 PHE CD1 HD1 sing N N 236 PHE CD2 CE2 doub Y N 237 PHE CD2 HD2 sing N N 238 PHE CE1 CZ doub Y N 239 PHE CE1 HE1 sing N N 240 PHE CE2 CZ sing Y N 241 PHE CE2 HE2 sing N N 242 PHE CZ HZ sing N N 243 PHE OXT HXT sing N N 244 PRO N CA sing N N 245 PRO N CD sing N N 246 PRO N H sing N N 247 PRO CA C sing N N 248 PRO CA CB sing N N 249 PRO CA HA sing N N 250 PRO C O doub N N 251 PRO C OXT sing N N 252 PRO CB CG sing N N 253 PRO CB HB2 sing N N 254 PRO CB HB3 sing N N 255 PRO CG CD sing N N 256 PRO CG HG2 sing N N 257 PRO CG HG3 sing N N 258 PRO CD HD2 sing N N 259 PRO CD HD3 sing N N 260 PRO OXT HXT sing N N 261 SER N CA sing N N 262 SER N H sing N N 263 SER N H2 sing N N 264 SER CA C sing N N 265 SER CA CB sing N N 266 SER CA HA sing N N 267 SER C O doub N N 268 SER C OXT sing N N 269 SER CB OG sing N N 270 SER CB HB2 sing N N 271 SER CB HB3 sing N N 272 SER OG HG sing N N 273 SER OXT HXT sing N N 274 THR N CA sing N N 275 THR N H sing N N 276 THR N H2 sing N N 277 THR CA C sing N N 278 THR CA CB sing N N 279 THR CA HA sing N N 280 THR C O doub N N 281 THR C OXT sing N N 282 THR CB OG1 sing N N 283 THR CB CG2 sing N N 284 THR CB HB sing N N 285 THR OG1 HG1 sing N N 286 THR CG2 HG21 sing N N 287 THR CG2 HG22 sing N N 288 THR CG2 HG23 sing N N 289 THR OXT HXT sing N N 290 TRP N CA sing N N 291 TRP N H sing N N 292 TRP N H2 sing N N 293 TRP CA C sing N N 294 TRP CA CB sing N N 295 TRP CA HA sing N N 296 TRP C O doub N N 297 TRP C OXT sing N N 298 TRP CB CG sing N N 299 TRP CB HB2 sing N N 300 TRP CB HB3 sing N N 301 TRP CG CD1 doub Y N 302 TRP CG CD2 sing Y N 303 TRP CD1 NE1 sing Y N 304 TRP CD1 HD1 sing N N 305 TRP CD2 CE2 doub Y N 306 TRP CD2 CE3 sing Y N 307 TRP NE1 CE2 sing Y N 308 TRP NE1 HE1 sing N N 309 TRP CE2 CZ2 sing Y N 310 TRP CE3 CZ3 doub Y N 311 TRP CE3 HE3 sing N N 312 TRP CZ2 CH2 doub Y N 313 TRP CZ2 HZ2 sing N N 314 TRP CZ3 CH2 sing Y N 315 TRP CZ3 HZ3 sing N N 316 TRP CH2 HH2 sing N N 317 TRP OXT HXT sing N N 318 TYR N CA sing N N 319 TYR N H sing N N 320 TYR N H2 sing N N 321 TYR CA C sing N N 322 TYR CA CB sing N N 323 TYR CA HA sing N N 324 TYR C O doub N N 325 TYR C OXT sing N N 326 TYR CB CG sing N N 327 TYR CB HB2 sing N N 328 TYR CB HB3 sing N N 329 TYR CG CD1 doub Y N 330 TYR CG CD2 sing Y N 331 TYR CD1 CE1 sing Y N 332 TYR CD1 HD1 sing N N 333 TYR CD2 CE2 doub Y N 334 TYR CD2 HD2 sing N N 335 TYR CE1 CZ doub Y N 336 TYR CE1 HE1 sing N N 337 TYR CE2 CZ sing Y N 338 TYR CE2 HE2 sing N N 339 TYR CZ OH sing N N 340 TYR OH HH sing N N 341 TYR OXT HXT sing N N 342 VAL N CA sing N N 343 VAL N H sing N N 344 VAL N H2 sing N N 345 VAL CA C sing N N 346 VAL CA CB sing N N 347 VAL CA HA sing N N 348 VAL C O doub N N 349 VAL C OXT sing N N 350 VAL CB CG1 sing N N 351 VAL CB CG2 sing N N 352 VAL CB HB sing N N 353 VAL CG1 HG11 sing N N 354 VAL CG1 HG12 sing N N 355 VAL CG1 HG13 sing N N 356 VAL CG2 HG21 sing N N 357 VAL CG2 HG22 sing N N 358 VAL CG2 HG23 sing N N 359 VAL OXT HXT sing N N 360 # _em_admin.current_status REL _em_admin.deposition_date 2024-03-18 _em_admin.deposition_site RCSB _em_admin.entry_id 9B34 _em_admin.last_update 2024-06-26 _em_admin.map_release_date 2024-05-22 _em_admin.title ;Structure of concanavalin A (ConA) dimer from the open-state structure of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to two ConA dimers. Type I interface between GluK2 ligand-binding domain and ConA ; # loop_ _em_buffer_component.buffer_id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.id _em_buffer_component.name 1 150 mM NaCl 1 'sodium chloride' 1 20 mM ? 2 'tris(hydroxymethyl)aminomethane' 1 1 mM ? 3 beta-Mercaptoethanol 1 0.05 % ? 4 digitonin 1 0.5 mM ? 5 BPAM344 1 0.09 mM ? 6 'concanavalin A' 1 2.5 mM ? 7 'L-Glutamic acid' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type NONE # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units MEGADALTONS _em_entity_assembly_molwt.value 0.05 # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 3823 _em_entity_assembly_naturalsource.organism 'Canavalia ensiformis' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell 'Human embryonic kidney 293' _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 9606 _em_entity_assembly_recombinant.organism 'Homo sapiens' _em_entity_assembly_recombinant.plasmid 'pEG BacMam' _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time 2.5 _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 58 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 5 _em_image_recording.num_real_images 22990 # _em_particle_selection.details ? _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.method ? _em_particle_selection.num_particles_selected 8660229 _em_particle_selection.reference_model ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? cryoSPARC 4.4.1 'IMAGE ACQUISITION' ? 2 1 ? 1 ? ? MASKING ? 3 1 1 1 ? ? 'CTF CORRECTION' ? 4 1 ? ? cryoSPARC 4.4.1 'LAYERLINE INDEXING' ? 5 1 1 1 ? ? 'DIFFRACTION INDEXING' ? 6 1 1 1 ? ? 'MODEL FITTING' ? 7 1 1 ? ? ? OTHER ? 8 1 1 1 ? ? 'MODEL REFINEMENT' ? 9 ? 1 ? PHENIX 1.18 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? cryoSPARC 4.4.1 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? cryoSPARC 4.4.1 CLASSIFICATION ? 12 1 ? ? ? ? RECONSTRUCTION ? 13 1 ? ? cryoSPARC 4.4.1 # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS)' 'United States' 'R01 NS083660' 1 'National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS)' 'United States' 'R01 NS107253' 2 'National Institutes of Health/National Institute of Arthritis and Musculoskeletal and Skin Diseases (NIH/NIAMS)' 'United States' 'R01 AR078814' 3 'National Institutes of Health/National Cancer Institute (NIH/NCI)' 'United States' 'R01 CA206573' 4 # _atom_sites.entry_id 9B34 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C CA N O S ZN # loop_