HEADER MEMBRANE PROTEIN 19-MAR-24 9B3H TITLE STRUCTURE OF A COMPLEX BETWEEN PASTEURELLA MULTOCIDA SURFACE TITLE 2 LIPOPROTEIN, PMSLP-1, AND BOVINE COMPLEMENT FACTOR I COMPND MOL_ID: 1; COMPND 2 MOLECULE: COMPLEMENT FACTOR I; COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: PASTEURELLA MULTOCIDA FACTOR I BINDING PROTEIN, FIBP; COMPND 6 CHAIN: B; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: PROTEIN SEQUENCE INCLUDES A SHORT LINKER, FOLLOWED BY COMPND 9 A THROMBIN CLEAVAGE SITE AND 10X HIS TAG. THE 10XHIS TAG WAS REMOVED. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: CATTLE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: PASTEURELLA MULTOCIDA 36950; SOURCE 7 ORGANISM_TAXID: 1075089; SOURCE 8 GENE: AET16641.1; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: T7SHUFFLE KEYWDS BACTERIAL SURFACE LIPOPROTEIN, COMPLEMENT PROTEIN, IMMUNE EVASION, KEYWDS 2 MEMBRANE PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR Q.H.NGUYEN,M.J.NORRIS,T.F.MORAES REVDAT 2 04-JUN-25 9B3H 1 JRNL REVDAT 1 23-APR-25 9B3H 0 JRNL AUTH Q.H.NGUYEN,C.H.R.LAI,M.J.NORRIS,D.NG,M.SHAH,C.C.LAI, JRNL AUTH 2 D.E.ISENMAN,T.F.MORAES JRNL TITL A SURFACE LIPOPROTEIN ON PASTEURELLA MULTOCIDA BINDS JRNL TITL 2 COMPLEMENT FACTOR I TO PROMOTE IMMUNE EVASION. JRNL REF PLOS PATHOG. V. 21 12686 2025 JRNL REFN ESSN 1553-7374 JRNL PMID 40327719 JRNL DOI 10.1371/JOURNAL.PPAT.1012686 REMARK 2 REMARK 2 RESOLUTION. 4.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, SERIALEM, UCSF CHIMERAX, REMARK 3 PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : INITIAL LOCAL FITTING WAS DONE USING CHIMERAX. REMARK 3 ITERATIVE ROUNDS OF MODEL BUILDING AND REAL-SPACE REFINEMENT WAS REMARK 3 DONE USING COOT AND PHENIX REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 4.000 REMARK 3 NUMBER OF PARTICLES : 200426 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9B3H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAR-24. REMARK 100 THE DEPOSITION ID IS D_1000282026. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : DIMERIC COMPLEX OF PMSLP-1 AND REMARK 245 COMPLEMENT FACTOR I REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.25 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : 3.5UL OF SAMPLE WAS APPLIED TO REMARK 245 THE GRID, FOLLOWED BY 5 S REMARK 245 BLOTTING REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : PASTEURELLA MULTOCIDA SURFACE REMARK 245 LIPOPROTEIN, PMSLP-1, AND BOVINE COMPLEMENT FACTOR I REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 2335 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON III (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1200.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 1 REMARK 465 ASP A 2 REMARK 465 ASN A 3 REMARK 465 PHE A 4 REMARK 465 ARG A 5 REMARK 465 LYS A 6 REMARK 465 ARG A 7 REMARK 465 GLY A 8 REMARK 465 LYS A 9 REMARK 465 SER A 10 REMARK 465 LYS A 11 REMARK 465 ALA A 12 REMARK 465 VAL A 13 REMARK 465 LYS A 14 REMARK 465 LYS A 15 REMARK 465 SER A 16 REMARK 465 GLU A 17 REMARK 465 ALA A 18 REMARK 465 HIS A 19 REMARK 465 HIS A 20 REMARK 465 ALA A 21 REMARK 465 PRO A 22 REMARK 465 GLU A 23 REMARK 465 ALA A 24 REMARK 465 SER A 25 REMARK 465 LEU A 26 REMARK 465 SER A 27 REMARK 465 LYS A 28 REMARK 465 GLU A 29 REMARK 465 THR A 30 REMARK 465 GLU A 31 REMARK 465 ALA A 32 REMARK 465 SER A 33 REMARK 465 SER A 34 REMARK 465 GLU A 35 REMARK 465 VAL A 36 REMARK 465 LYS A 37 REMARK 465 PRO A 38 REMARK 465 THR A 39 REMARK 465 SER A 40 REMARK 465 THR A 41 REMARK 465 GLN A 42 REMARK 465 ASP A 43 REMARK 465 THR A 44 REMARK 465 SER A 45 REMARK 465 GLN A 46 REMARK 465 LYS A 47 REMARK 465 GLU A 312 REMARK 465 THR A 313 REMARK 465 GLY A 314 REMARK 465 HIS A 315 REMARK 465 PRO A 316 REMARK 465 GLU A 317 REMARK 465 ILE A 318 REMARK 465 LYS A 319 REMARK 465 GLU A 320 REMARK 465 ALA A 321 REMARK 465 ASN A 350 REMARK 465 MET A 351 REMARK 465 HIS A 352 REMARK 465 ILE A 353 REMARK 465 ARG A 354 REMARK 465 ARG A 355 REMARK 465 LYS A 356 REMARK 465 ARG A 357 REMARK 465 VAL A 358 REMARK 465 VAL A 359 REMARK 465 GLY A 360 REMARK 465 GLY A 361 REMARK 465 MET B 15 REMARK 465 GLU B 16 REMARK 465 LYS B 17 REMARK 465 ARG B 18 REMARK 465 THR B 19 REMARK 465 VAL B 20 REMARK 465 THR B 21 REMARK 465 ILE B 22 REMARK 465 PRO B 23 REMARK 465 GLN B 24 REMARK 465 ALA B 25 REMARK 465 GLN B 26 REMARK 465 LYS B 27 REMARK 465 VAL B 28 REMARK 465 ALA B 29 REMARK 465 GLU B 30 REMARK 465 LYS B 31 REMARK 465 PRO B 32 REMARK 465 ALA B 33 REMARK 465 LEU B 34 REMARK 465 THR B 35 REMARK 465 ILE B 36 REMARK 465 GLN B 37 REMARK 465 THR B 38 REMARK 465 VAL B 39 REMARK 465 VAL B 40 REMARK 465 THR B 41 REMARK 465 SER B 42 REMARK 465 PRO B 43 REMARK 465 THR B 44 REMARK 465 THR B 45 REMARK 465 PRO B 46 REMARK 465 ILE B 47 REMARK 465 LYS B 48 REMARK 465 ALA B 49 REMARK 465 PRO B 50 REMARK 465 SER B 51 REMARK 465 LEU B 52 REMARK 465 ALA B 53 REMARK 465 PRO B 54 REMARK 465 THR B 55 REMARK 465 ILE B 56 REMARK 465 ASP B 57 REMARK 465 THR B 58 REMARK 465 ALA B 59 REMARK 465 PRO B 60 REMARK 465 LYS B 61 REMARK 465 GLN B 62 REMARK 465 ASN B 63 REMARK 465 PRO B 64 REMARK 465 VAL B 65 REMARK 465 PRO B 66 REMARK 465 THR B 67 REMARK 465 ALA B 68 REMARK 465 GLN B 69 REMARK 465 ILE B 70 REMARK 465 THR B 71 REMARK 465 ALA B 72 REMARK 465 THR B 73 REMARK 465 LEU B 74 REMARK 465 PRO B 75 REMARK 465 ALA B 76 REMARK 465 GLU B 77 REMARK 465 PRO B 78 REMARK 465 VAL B 79 REMARK 465 LYS B 80 REMARK 465 VAL B 81 REMARK 465 PRO B 82 REMARK 465 VAL B 83 REMARK 465 LEU B 84 REMARK 465 ILE B 85 REMARK 465 PRO B 86 REMARK 465 GLU B 87 REMARK 465 VAL B 88 REMARK 465 ASN B 89 REMARK 465 LYS B 90 REMARK 465 THR B 91 REMARK 465 LEU B 92 REMARK 465 LEU B 93 REMARK 465 GLU B 94 REMARK 465 THR B 95 REMARK 465 SER B 96 REMARK 465 THR B 97 REMARK 465 ASN B 98 REMARK 465 PRO B 99 REMARK 465 VAL B 100 REMARK 465 LYS B 101 REMARK 465 ASP B 102 REMARK 465 GLU B 319 REMARK 465 LEU B 320 REMARK 465 ALA B 321 REMARK 465 LEU B 322 REMARK 465 VAL B 323 REMARK 465 PRO B 324 REMARK 465 ARG B 325 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE1 PHE A 339 C8 NAG A 703 1.49 REMARK 500 OG SER B 290 OD1 ASN B 292 2.13 REMARK 500 O ARG A 592 OG SER A 596 2.15 REMARK 500 CD1 PHE A 339 C8 NAG A 703 2.17 REMARK 500 OG1 THR B 169 O ARG B 174 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 77 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP A 242 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 127 48.42 -80.92 REMARK 500 ARG A 404 40.87 -101.32 REMARK 500 TYR A 443 17.54 58.93 REMARK 500 CYS A 512 -5.50 -142.44 REMARK 500 GLU A 571 -4.16 69.87 REMARK 500 PHE A 572 74.75 -114.11 REMARK 500 ASN A 599 23.26 48.37 REMARK 500 ASN B 239 64.31 -102.74 REMARK 500 ASN B 251 83.99 -156.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-44139 RELATED DB: EMDB REMARK 900 STRUCTURE OF A COMPLEX BETWEEN PASTEURELLA MULTOCIDA SURFACE REMARK 900 LIPOPROTEIN, PMSLP-1, AND BOVINE COMPLEMENT FACTOR I DBREF1 9B3H A 1 600 UNP A0A3Q1MF14_BOVIN DBREF2 9B3H A A0A3Q1MF14 19 618 DBREF 9B3H B 15 325 PDB 9B3H 9B3H 15 325 SEQRES 1 A 600 GLU ASP ASN PHE ARG LYS ARG GLY LYS SER LYS ALA VAL SEQRES 2 A 600 LYS LYS SER GLU ALA HIS HIS ALA PRO GLU ALA SER LEU SEQRES 3 A 600 SER LYS GLU THR GLU ALA SER SER GLU VAL LYS PRO THR SEQRES 4 A 600 SER THR GLN ASP THR SER GLN LYS ASP PHE VAL ASP LYS SEQRES 5 A 600 LYS CYS LEU THR GLU LYS HIS THR HIS LEU SER CYS ASN SEQRES 6 A 600 LYS VAL PHE CYS GLN PRO TRP GLN LYS CYS ILE ASP GLY SEQRES 7 A 600 THR CYS LEU CYS LYS LEU PRO TYR GLN CYS PRO LYS ASN SEQRES 8 A 600 GLY THR ARG VAL CYS SER THR ASN GLY LYS SER TYR SER SEQRES 9 A 600 THR TYR CYS GLN GLN LYS SER PHE GLU CYS TYR ARG PRO SEQRES 10 A 600 GLU ALA LYS PHE LEU LYS SER GLY ALA CYS THR GLY GLY SEQRES 11 A 600 GLY GLN PHE SER VAL SER LEU SER ASN GLY LYS GLN ASP SEQRES 12 A 600 SER GLU GLY ILE VAL ALA VAL LYS LEU ALA ASP LEU ASP SEQRES 13 A 600 THR LYS MET PHE VAL CYS GLY ASP SER TRP SER ILE THR SEQRES 14 A 600 GLU ALA ASN VAL ALA CYS ILE ASP ARG GLY PHE GLN LEU SEQRES 15 A 600 GLY ALA LEU ASP THR HIS ARG ARG ASP PRO ASP PRO ASN SEQRES 16 A 600 SER ALA GLU CYS LEU HIS VAL ARG CYS ARG GLY LEU GLU SEQRES 17 A 600 THR SER LEU ALA GLU CYS THR PHE THR LYS GLY VAL HIS SEQRES 18 A 600 ASN SER GLU GLY LEU ALA GLY VAL VAL CYS TYR THR GLU SEQRES 19 A 600 SER ALA ALA PRO PRO LYS LYS ASP SER PHE GLN CYS VAL SEQRES 20 A 600 ASN GLY LYS ARG ILE PRO GLN LYS LYS ALA CYS ASP GLY SEQRES 21 A 600 VAL ASN ASP CYS VAL ASP LYS SER ASP GLU LEU CYS CYS SEQRES 22 A 600 LYS ASP CYS ARG GLY GLU GLY PHE LEU CYS LYS SER GLY SEQRES 23 A 600 VAL CYS ILE PRO LYS GLN TYR LYS CYS ASN GLY GLU LEU SEQRES 24 A 600 ASP CYS ILE THR GLY GLU ASP GLU VAL GLY CYS GLU GLU SEQRES 25 A 600 THR GLY HIS PRO GLU ILE LYS GLU ALA ALA GLU MET LEU SEQRES 26 A 600 THR ALA ASP MET ASP ALA GLU ARG LYS PHE THR LYS SER SEQRES 27 A 600 PHE LEU PRO LYS LEU SER CYS GLY VAL LYS ASN ASN MET SEQRES 28 A 600 HIS ILE ARG ARG LYS ARG VAL VAL GLY GLY LYS PRO ALA SEQRES 29 A 600 LYS MET GLY GLU PHE PRO TRP GLN MET ALA ILE LYS GLU SEQRES 30 A 600 GLY ASP LYS ILE HIS CYS GLY GLY ILE TYR ILE GLY GLY SEQRES 31 A 600 CYS TRP ILE LEU THR ALA ALA HIS CYS VAL ARG ILE SER SEQRES 32 A 600 ARG MET HIS ARG TYR GLN ILE TRP THR SER PHE THR ASP SEQRES 33 A 600 TRP LEU ARG PRO GLY PHE GLN THR VAL VAL HIS SER VAL SEQRES 34 A 600 ASN ARG ILE ILE ILE HIS GLU ASN TYR ASN GLY THR THR SEQRES 35 A 600 TYR GLN ASN ASP ILE ALA LEU ILE GLU MET LYS LYS ARG SEQRES 36 A 600 PRO ASN GLU LYS GLU CYS VAL LEU SER LYS SER ILE PRO SEQRES 37 A 600 ALA CYS VAL PRO TRP SER PRO TYR LEU PHE GLN PRO ASN SEQRES 38 A 600 ASP LYS CYS ILE VAL SER GLY TRP GLY ARG GLU LYS ASP SEQRES 39 A 600 ASN GLN LYS VAL TYR SER LEU ARG TRP GLY GLU VAL HIS SEQRES 40 A 600 LEU ILE ASN ASN CYS SER GLU PHE TYR PRO GLY ARG TYR SEQRES 41 A 600 PHE GLU LYS GLU MET GLN CYS ALA GLY THR ASP ASP GLY SEQRES 42 A 600 SER ILE ASP ALA CYS LYS GLY ASP SER GLY GLY PRO LEU SEQRES 43 A 600 VAL CYS GLN ASP VAL ASN ASN VAL THR TYR VAL TRP GLY SEQRES 44 A 600 VAL VAL SER TRP GLY GLU ASN CYS GLY LYS SER GLU PHE SEQRES 45 A 600 PRO GLY VAL TYR THR LYS VAL ALA ASN TYR PHE ASP TRP SEQRES 46 A 600 ILE SER GLN HIS VAL GLY ARG SER LEU ILE SER GLN HIS SEQRES 47 A 600 ASN ILE SEQRES 1 B 311 MET GLU LYS ARG THR VAL THR ILE PRO GLN ALA GLN LYS SEQRES 2 B 311 VAL ALA GLU LYS PRO ALA LEU THR ILE GLN THR VAL VAL SEQRES 3 B 311 THR SER PRO THR THR PRO ILE LYS ALA PRO SER LEU ALA SEQRES 4 B 311 PRO THR ILE ASP THR ALA PRO LYS GLN ASN PRO VAL PRO SEQRES 5 B 311 THR ALA GLN ILE THR ALA THR LEU PRO ALA GLU PRO VAL SEQRES 6 B 311 LYS VAL PRO VAL LEU ILE PRO GLU VAL ASN LYS THR LEU SEQRES 7 B 311 LEU GLU THR SER THR ASN PRO VAL LYS ASP SER TYR ASN SEQRES 8 B 311 LYS ASP ALA VAL PHE THR TYR GLU LEU ILE ALA ASN PRO SEQRES 9 B 311 ASP ALA ASP TYR SER ASP GLN LYS LEU ILE LEU LYS LYS SEQRES 10 B 311 GLU ILE SER TYR ILE LYS LEU ASN LEU GLY ILE ASN GLN SEQRES 11 B 311 ASP ASN LYS ASN ALA PRO SER TYR ILE PHE ASN LEU LEU SEQRES 12 B 311 ASP ASP ASN VAL TYR TYR GLY PHE TYR ARG ASP THR GLN SEQRES 13 B 311 ASP MET ASN ARG ILE GLU ASN LYS TYR THR TYR ALA PHE SEQRES 14 B 311 LYS LYS GLU ALA GLU ASN PHE ASP ASN LEU GLN LYS PHE SEQRES 15 B 311 ASN ALA THR TYR GLU GLY GLN PHE TRP PHE SER SER ILE SEQRES 16 B 311 ASP THR PRO ASN VAL PRO THR VAL ALA ARG ALA PHE LEU SEQRES 17 B 311 THR TYR ASN ASN GLY ARG VAL ASP GLY GLU ILE LEU ALA SEQRES 18 B 311 LYS HIS TRP ASN GLU LYS LEU PHE GLN ILE THR GLY PHE SEQRES 19 B 311 ASP ASN ASN PRO ARG LYS VAL GLU ILE PHE PRO THR VAL SEQRES 20 B 311 GLU TYR LEU PRO ASN SER GLY THR ARG LEU THR LYS GLY SEQRES 21 B 311 ALA THR SER PRO HIS ARG PHE GLN MET ASP LEU HIS PHE SEQRES 22 B 311 ILE ASN SER THR ASN GLY GLU LYS ASN LYS TYR LEU VAL SEQRES 23 B 311 GLY GLN GLY SER THR GLU GLN TYR TRP GLY VAL LEU GLY SEQRES 24 B 311 MET GLU LYS LYS GLN GLU LEU ALA LEU VAL PRO ARG HET NAG C 1 14 HET NAG C 2 14 HET NAG A 701 14 HET NAG A 702 14 HET NAG A 703 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 5(C8 H15 N O6) HELIX 1 AA1 ASP A 51 THR A 56 1 6 HELIX 2 AA2 LEU A 84 CYS A 88 5 5 HELIX 3 AA3 THR A 105 ARG A 116 1 12 HELIX 4 AA4 SER A 167 ARG A 178 1 12 HELIX 5 AA5 SER A 210 CYS A 214 5 5 HELIX 6 AA6 PRO A 239 LYS A 241 5 3 HELIX 7 AA7 LYS A 255 ALA A 257 5 3 HELIX 8 AA8 LYS A 267 LEU A 271 5 5 HELIX 9 AA9 PRO A 290 LYS A 294 5 5 HELIX 10 AB1 GLY A 304 VAL A 308 5 5 HELIX 11 AB2 ASP A 328 SER A 338 1 11 HELIX 12 AB3 ALA A 396 VAL A 400 5 5 HELIX 13 AB4 ARG A 401 HIS A 406 5 6 HELIX 14 AB5 GLU A 492 GLN A 496 5 5 HELIX 15 AB6 TYR A 582 GLY A 591 1 10 HELIX 16 AB7 GLY A 591 SER A 596 1 6 SHEET 1 AA1 2 GLN A 73 ILE A 76 0 SHEET 2 AA1 2 THR A 79 CYS A 82 -1 O LEU A 81 N LYS A 74 SHEET 1 AA2 3 SER A 102 TYR A 103 0 SHEET 2 AA2 3 VAL A 95 SER A 97 -1 N VAL A 95 O TYR A 103 SHEET 3 AA2 3 PHE A 121 SER A 124 -1 O LEU A 122 N CYS A 96 SHEET 1 AA3 3 SER A 134 SER A 138 0 SHEET 2 AA3 3 GLU A 145 LYS A 151 -1 O ILE A 147 N SER A 138 SHEET 3 AA3 3 MET A 159 PHE A 160 -1 O MET A 159 N VAL A 150 SHEET 1 AA4 4 SER A 134 SER A 138 0 SHEET 2 AA4 4 GLU A 145 LYS A 151 -1 O ILE A 147 N SER A 138 SHEET 3 AA4 4 LEU A 226 CYS A 231 -1 O VAL A 229 N GLY A 146 SHEET 4 AA4 4 ALA A 184 ARG A 190 -1 N HIS A 188 O GLY A 228 SHEET 1 AA5 2 GLU A 198 ARG A 203 0 SHEET 2 AA5 2 THR A 215 VAL A 220 -1 O THR A 215 N ARG A 203 SHEET 1 AA6 2 SER A 243 GLN A 245 0 SHEET 2 AA6 2 ARG A 251 PRO A 253 -1 O ILE A 252 N PHE A 244 SHEET 1 AA7 2 PHE A 281 LEU A 282 0 SHEET 2 AA7 2 CYS A 288 ILE A 289 -1 O ILE A 289 N PHE A 281 SHEET 1 AA8 7 GLN A 372 GLU A 377 0 SHEET 2 AA8 7 LYS A 380 GLY A 389 -1 O GLY A 385 N MET A 373 SHEET 3 AA8 7 TRP A 392 THR A 395 -1 O LEU A 394 N ILE A 386 SHEET 4 AA8 7 ALA A 448 MET A 452 -1 O ALA A 448 N THR A 395 SHEET 5 AA8 7 VAL A 425 ILE A 434 -1 N ARG A 431 O GLU A 451 SHEET 6 AA8 7 TYR A 408 THR A 412 -1 N ILE A 410 O HIS A 427 SHEET 7 AA8 7 GLN A 372 GLU A 377 -1 N LYS A 376 O GLN A 409 SHEET 1 AA9 7 LYS A 483 GLY A 488 0 SHEET 2 AA9 7 ARG A 502 LEU A 508 -1 O GLY A 504 N VAL A 486 SHEET 3 AA9 7 MET A 525 GLY A 529 -1 O GLY A 529 N HIS A 507 SHEET 4 AA9 7 GLY A 574 LYS A 578 -1 O TYR A 576 N GLN A 526 SHEET 5 AA9 7 THR A 555 TRP A 563 -1 N TRP A 563 O VAL A 575 SHEET 6 AA9 7 PRO A 545 GLN A 549 -1 N CYS A 548 O TYR A 556 SHEET 7 AA9 7 LYS A 483 GLY A 488 -1 N ILE A 485 O VAL A 547 SHEET 1 AB1 2 VAL B 109 ALA B 116 0 SHEET 2 AB1 2 LEU B 129 ILE B 136 -1 O LYS B 130 N ILE B 115 SHEET 1 AB2 4 GLY B 141 ASN B 143 0 SHEET 2 AB2 4 TYR B 152 ASP B 158 -1 O LEU B 156 N GLY B 141 SHEET 3 AB2 4 VAL B 161 ASP B 168 -1 O TYR B 163 N ASN B 155 SHEET 4 AB2 4 GLU B 176 PHE B 183 -1 O GLU B 176 N ASP B 168 SHEET 1 AB3 6 ARG B 228 ALA B 235 0 SHEET 2 AB3 6 ALA B 218 ASN B 225 -1 N ARG B 219 O LEU B 234 SHEET 3 AB3 6 ALA B 198 SER B 208 -1 N ALA B 198 O TYR B 224 SHEET 4 AB3 6 TYR B 308 GLN B 318 -1 O GLY B 313 N GLN B 203 SHEET 5 AB3 6 TYR B 298 SER B 304 -1 N GLY B 301 O LEU B 312 SHEET 6 AB3 6 HIS B 286 ILE B 288 -1 N ILE B 288 O TYR B 298 SHEET 1 AB4 3 PHE B 243 PHE B 248 0 SHEET 2 AB4 3 ASN B 251 PRO B 259 -1 O GLU B 256 N THR B 246 SHEET 3 AB4 3 PHE B 281 ASP B 284 -1 O MET B 283 N VAL B 255 SSBOND 1 CYS A 54 CYS A 272 1555 1555 2.03 SSBOND 2 CYS A 64 CYS A 75 1555 1555 2.03 SSBOND 3 CYS A 69 CYS A 80 1555 1555 2.03 SSBOND 4 CYS A 82 CYS A 114 1555 1555 2.02 SSBOND 5 CYS A 88 CYS A 107 1555 1555 2.03 SSBOND 6 CYS A 96 CYS A 127 1555 1555 2.03 SSBOND 7 CYS A 162 CYS A 199 1555 1555 2.03 SSBOND 8 CYS A 175 CYS A 231 1555 1555 2.03 SSBOND 9 CYS A 204 CYS A 214 1555 1555 2.03 SSBOND 10 CYS A 246 CYS A 264 1555 1555 2.03 SSBOND 11 CYS A 258 CYS A 273 1555 1555 2.03 SSBOND 12 CYS A 276 CYS A 288 1555 1555 2.03 SSBOND 13 CYS A 283 CYS A 301 1555 1555 2.03 SSBOND 14 CYS A 295 CYS A 310 1555 1555 2.03 SSBOND 15 CYS A 345 CYS A 470 1555 1555 2.03 SSBOND 16 CYS A 383 CYS A 399 1555 1555 2.03 SSBOND 17 CYS A 391 CYS A 461 1555 1555 2.03 SSBOND 18 CYS A 484 CYS A 548 1555 1555 2.03 SSBOND 19 CYS A 512 CYS A 527 1555 1555 2.03 LINK ND2 ASN A 91 C1 NAG A 703 1555 1555 1.44 LINK ND2 ASN A 439 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN A 511 C1 NAG A 701 1555 1555 1.44 LINK ND2 ASN A 553 C1 NAG A 702 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 TER 4130 ILE A 600 TER 5911 GLN B 318 HETATM 5912 C1 NAG C 1 105.857 147.007 122.529 1.00200.02 C HETATM 5913 C2 NAG C 1 104.451 146.670 123.023 1.00200.33 C HETATM 5914 C3 NAG C 1 103.818 147.889 123.690 1.00200.56 C HETATM 5915 C4 NAG C 1 104.736 148.461 124.763 1.00201.89 C HETATM 5916 C5 NAG C 1 106.127 148.711 124.186 1.00200.88 C HETATM 5917 C6 NAG C 1 107.135 149.154 125.222 1.00201.00 C HETATM 5918 C7 NAG C 1 103.620 144.933 121.500 1.00199.14 C HETATM 5919 C8 NAG C 1 102.694 144.624 120.363 1.00199.07 C HETATM 5920 N2 NAG C 1 103.616 146.198 121.931 1.00199.19 N HETATM 5921 O3 NAG C 1 102.570 147.518 124.265 1.00200.29 O HETATM 5922 O4 NAG C 1 104.196 149.689 125.239 1.00203.65 O HETATM 5923 O5 NAG C 1 106.638 147.502 123.610 1.00200.84 O HETATM 5924 O6 NAG C 1 107.087 148.327 126.376 1.00200.65 O HETATM 5925 O7 NAG C 1 104.341 144.078 122.003 1.00198.67 O HETATM 5926 C1 NAG C 2 104.020 149.666 126.676 1.00231.80 C HETATM 5927 C2 NAG C 2 102.799 150.518 127.027 1.00232.10 C HETATM 5928 C3 NAG C 2 102.568 150.506 128.535 1.00231.40 C HETATM 5929 C4 NAG C 2 102.479 149.074 129.048 1.00231.56 C HETATM 5930 C5 NAG C 2 103.701 148.273 128.605 1.00231.43 C HETATM 5931 C6 NAG C 2 103.616 146.812 128.977 1.00231.05 C HETATM 5932 C7 NAG C 2 102.631 152.258 125.304 1.00231.48 C HETATM 5933 C8 NAG C 2 102.859 153.703 124.977 1.00230.65 C HETATM 5934 N2 NAG C 2 102.956 151.881 126.545 1.00231.95 N HETATM 5935 O3 NAG C 2 101.367 151.207 128.837 1.00230.38 O HETATM 5936 O4 NAG C 2 102.407 149.071 130.469 1.00230.50 O HETATM 5937 O5 NAG C 2 103.835 148.331 127.177 1.00231.93 O HETATM 5938 O6 NAG C 2 103.153 146.643 130.310 1.00230.75 O HETATM 5939 O7 NAG C 2 102.175 151.469 124.483 1.00231.51 O HETATM 5940 C1 NAG A 701 126.717 146.456 132.488 1.00244.41 C HETATM 5941 C2 NAG A 701 127.540 146.506 133.773 1.00245.12 C HETATM 5942 C3 NAG A 701 126.631 146.727 134.976 1.00245.17 C HETATM 5943 C4 NAG A 701 125.779 147.971 134.769 1.00244.77 C HETATM 5944 C5 NAG A 701 125.021 147.876 133.448 1.00244.72 C HETATM 5945 C6 NAG A 701 124.248 149.132 133.122 1.00244.09 C HETATM 5946 C7 NAG A 701 129.650 145.246 133.751 1.00244.08 C HETATM 5947 C8 NAG A 701 130.308 146.534 133.353 1.00243.65 C HETATM 5948 N2 NAG A 701 128.326 145.293 133.938 1.00244.85 N HETATM 5949 O3 NAG A 701 127.425 146.872 136.148 1.00245.43 O HETATM 5950 O4 NAG A 701 124.846 148.105 135.835 1.00243.95 O HETATM 5951 O5 NAG A 701 125.940 147.660 132.364 1.00244.91 O HETATM 5952 O6 NAG A 701 123.556 149.625 134.262 1.00243.80 O HETATM 5953 O7 NAG A 701 130.289 144.209 133.897 1.00243.83 O HETATM 5954 C1 NAG A 702 140.767 129.773 109.153 1.00223.84 C HETATM 5955 C2 NAG A 702 141.015 129.991 110.650 1.00224.36 C HETATM 5956 C3 NAG A 702 142.446 130.467 110.892 1.00224.80 C HETATM 5957 C4 NAG A 702 143.443 129.520 110.241 1.00224.09 C HETATM 5958 C5 NAG A 702 143.117 129.363 108.762 1.00223.48 C HETATM 5959 C6 NAG A 702 144.010 128.365 108.063 1.00223.16 C HETATM 5960 C7 NAG A 702 139.583 130.856 112.446 1.00224.27 C HETATM 5961 C8 NAG A 702 138.610 131.923 112.849 1.00223.31 C HETATM 5962 N2 NAG A 702 140.062 130.941 111.201 1.00223.58 N HETATM 5963 O3 NAG A 702 142.691 130.541 112.292 1.00225.93 O HETATM 5964 O4 NAG A 702 144.764 130.032 110.378 1.00223.58 O HETATM 5965 O5 NAG A 702 141.772 128.889 108.615 1.00224.16 O HETATM 5966 O6 NAG A 702 145.311 128.346 108.634 1.00223.31 O HETATM 5967 O7 NAG A 702 139.920 129.959 113.212 1.00225.71 O HETATM 5968 C1 NAG A 703 125.060 99.031 108.764 1.00217.11 C HETATM 5969 C2 NAG A 703 126.200 99.684 107.978 1.00217.35 C HETATM 5970 C3 NAG A 703 125.916 99.641 106.474 1.00217.45 C HETATM 5971 C4 NAG A 703 125.531 98.234 106.034 1.00217.91 C HETATM 5972 C5 NAG A 703 124.407 97.701 106.914 1.00218.10 C HETATM 5973 C6 NAG A 703 124.028 96.275 106.587 1.00217.14 C HETATM 5974 C7 NAG A 703 127.378 101.380 109.295 1.00216.30 C HETATM 5975 C8 NAG A 703 127.473 102.834 109.645 1.00216.09 C HETATM 5976 N2 NAG A 703 126.425 101.050 108.419 1.00216.98 N HETATM 5977 O3 NAG A 703 127.068 100.076 105.762 1.00217.16 O HETATM 5978 O4 NAG A 703 125.099 98.250 104.678 1.00217.52 O HETATM 5979 O5 NAG A 703 124.840 97.711 108.279 1.00217.74 O HETATM 5980 O6 NAG A 703 124.837 95.749 105.543 1.00216.62 O HETATM 5981 O7 NAG A 703 128.129 100.541 109.783 1.00215.37 O CONECT 58 1708 CONECT 138 233 CONECT 179 266 CONECT 233 138 CONECT 266 179 CONECT 280 532 CONECT 331 473 CONECT 355 5968 CONECT 390 634 CONECT 473 331 CONECT 532 280 CONECT 634 390 CONECT 884 1164 CONECT 977 1398 CONECT 1164 884 CONECT 1206 1279 CONECT 1279 1206 CONECT 1398 977 CONECT 1514 1647 CONECT 1606 1714 CONECT 1647 1514 CONECT 1708 58 CONECT 1714 1606 CONECT 1737 1822 CONECT 1790 1925 CONECT 1822 1737 CONECT 1882 1987 CONECT 1925 1790 CONECT 1987 1882 CONECT 2184 3093 CONECT 2388 2501 CONECT 2438 3031 CONECT 2501 2388 CONECT 2853 5912 CONECT 3031 2438 CONECT 3093 2184 CONECT 3212 3709 CONECT 3438 5940 CONECT 3444 3577 CONECT 3577 3444 CONECT 3709 3212 CONECT 3749 5954 CONECT 5912 2853 5913 5923 CONECT 5913 5912 5914 5920 CONECT 5914 5913 5915 5921 CONECT 5915 5914 5916 5922 CONECT 5916 5915 5917 5923 CONECT 5917 5916 5924 CONECT 5918 5919 5920 5925 CONECT 5919 5918 CONECT 5920 5913 5918 CONECT 5921 5914 CONECT 5922 5915 5926 CONECT 5923 5912 5916 CONECT 5924 5917 CONECT 5925 5918 CONECT 5926 5922 5927 5937 CONECT 5927 5926 5928 5934 CONECT 5928 5927 5929 5935 CONECT 5929 5928 5930 5936 CONECT 5930 5929 5931 5937 CONECT 5931 5930 5938 CONECT 5932 5933 5934 5939 CONECT 5933 5932 CONECT 5934 5927 5932 CONECT 5935 5928 CONECT 5936 5929 CONECT 5937 5926 5930 CONECT 5938 5931 CONECT 5939 5932 CONECT 5940 3438 5941 5951 CONECT 5941 5940 5942 5948 CONECT 5942 5941 5943 5949 CONECT 5943 5942 5944 5950 CONECT 5944 5943 5945 5951 CONECT 5945 5944 5952 CONECT 5946 5947 5948 5953 CONECT 5947 5946 CONECT 5948 5941 5946 CONECT 5949 5942 CONECT 5950 5943 CONECT 5951 5940 5944 CONECT 5952 5945 CONECT 5953 5946 CONECT 5954 3749 5955 5965 CONECT 5955 5954 5956 5962 CONECT 5956 5955 5957 5963 CONECT 5957 5956 5958 5964 CONECT 5958 5957 5959 5965 CONECT 5959 5958 5966 CONECT 5960 5961 5962 5967 CONECT 5961 5960 CONECT 5962 5955 5960 CONECT 5963 5956 CONECT 5964 5957 CONECT 5965 5954 5958 CONECT 5966 5959 CONECT 5967 5960 CONECT 5968 355 5969 5979 CONECT 5969 5968 5970 5976 CONECT 5970 5969 5971 5977 CONECT 5971 5970 5972 5978 CONECT 5972 5971 5973 5979 CONECT 5973 5972 5980 CONECT 5974 5975 5976 5981 CONECT 5975 5974 CONECT 5976 5969 5974 CONECT 5977 5970 CONECT 5978 5971 CONECT 5979 5968 5972 CONECT 5980 5973 CONECT 5981 5974 MASTER 338 0 5 16 47 0 0 6 5979 2 112 71 END