data_9B56 # _entry.id 9B56 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.396 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9B56 pdb_00009b56 10.2210/pdb9b56/pdb WWPDB D_1000281812 ? ? EMDB EMD-44201 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2024-06-05 2 'Structure model' 1 1 2024-08-14 3 'Structure model' 1 2 2024-08-28 4 'Structure model' 1 3 2024-09-04 5 'Structure model' 1 4 2024-09-11 6 'Structure model' 1 5 2024-09-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 5 'Structure model' 'Data collection' 8 5 'Structure model' 'Database references' 9 6 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' em_admin 3 3 'Structure model' citation 4 3 'Structure model' citation_author 5 3 'Structure model' em_admin 6 4 'Structure model' citation_author 7 4 'Structure model' em_admin 8 5 'Structure model' citation 9 5 'Structure model' citation_author 10 5 'Structure model' em_admin 11 6 'Structure model' em_admin # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.pdbx_database_id_DOI' 7 2 'Structure model' '_citation.year' 8 2 'Structure model' '_em_admin.last_update' 9 3 'Structure model' '_citation.pdbx_database_id_PubMed' 10 3 'Structure model' '_citation.title' 11 3 'Structure model' '_citation_author.name' 12 3 'Structure model' '_em_admin.last_update' 13 4 'Structure model' '_citation_author.identifier_ORCID' 14 4 'Structure model' '_em_admin.last_update' 15 5 'Structure model' '_citation.journal_volume' 16 5 'Structure model' '_citation.page_first' 17 5 'Structure model' '_citation.page_last' 18 5 'Structure model' '_citation_author.identifier_ORCID' 19 5 'Structure model' '_em_admin.last_update' 20 6 'Structure model' '_em_admin.last_update' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9B56 _pdbx_database_status.recvd_initial_deposition_date 2024-03-22 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible N # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type EMDB 'Ubiquitin E2-Ub-E3 HECT tetrahedral transthiolation intermediate mimic - state 2' EMD-44201 'associated EM volume' PDB . 9B55 unspecified PDB . 9B57 unspecified PDB . 9B58 unspecified PDB . 9B59 unspecified PDB . 9B5A unspecified PDB . 9B5B unspecified # _pdbx_contact_author.id 3 _pdbx_contact_author.email limac@mskcc.org _pdbx_contact_author.name_first Christopher _pdbx_contact_author.name_last Lima _pdbx_contact_author.name_mi D _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-9163-6092 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Kochanczyk, T.' 1 0000-0002-4989-8064 'Lima, C.D.' 2 0000-0002-9163-6092 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Nature _citation.journal_id_ASTM NATUAS _citation.journal_id_CSD 0006 _citation.journal_id_ISSN 1476-4687 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 633 _citation.language ? _citation.page_first 216 _citation.page_last 223 _citation.title 'Structural basis for transthiolation intermediates in the ubiquitin pathway.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41586-024-07828-9 _citation.pdbx_database_id_PubMed 39143218 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kochanczyk, T.' 1 0000-0002-4989-8064 primary 'Hann, Z.S.' 2 0000-0003-4284-5979 primary 'Lux, M.C.' 3 0000-0002-3001-2243 primary 'Delos Reyes, A.M.V.' 4 0000-0002-6017-4948 primary 'Ji, C.' 5 ? primary 'Tan, D.S.' 6 0000-0002-7956-9659 primary 'Lima, C.D.' 7 0000-0002-9163-6092 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Ubiquitin-conjugating enzyme E2 4' 17043.336 1 2.3.2.23 C21S/C107S ? 'C-terminal GGLVPR is a residual artifact after thrombin cleavage of affinity tag' 2 polymer man Ubiquitin 8769.948 1 ? ? ? 'N-terminal GSGG is a residual artifact after TEV protease cleavage of affinity tag' 3 polymer man 'E3 ubiquitin-protein ligase pub2' 44231.828 1 2.3.2.26 ? ? 'N-terminal SHM is a residual artifact after cleaving the affinity tag' 4 non-polymer syn 4-aminobutanenitrile 84.120 1 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'E2 ubiquitin-conjugating enzyme 4,Ubiquitin carrier protein 4,Ubiquitin-protein ligase 4' 3 'HECT-type E3 ubiquitin transferase pub2' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MALKRINRELADLGKDPPSSSSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINS NGSICLDILRDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHVYKTDRSRYELSAREWTRKYAIGGLVPR ; ;MALKRINRELADLGKDPPSSSSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINS NGSICLDILRDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHVYKTDRSRYELSAREWTRKYAIGGLVPR ; A ? 2 'polypeptide(L)' no no GSGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG GSGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG B ? 3 'polypeptide(L)' no no ;SHMDEYQRKIAYMYDRPEMAVNDAQLQLKVSRATTFEDAYDIISKLSVSDMKKKLLIRFRNEDGLDYGGVSREFFYILSH AIFNPGYSLFEYATDDNYGLQISPLSSVNPDFRSYFRFVGRVMGLAIYHRRYLDVQFVLPFYKRILQKPLCLEDVKDVDE VYYESLKWIKNNDVDESLCLNFSVEENRFGESVTVDLIPNGRNIAVNNQNKMNYLKALTEHKLVTSTEEQFNALKGGLNE LIPDSVLQIFNENELDTLLNGKRDIDVQDWKRFTDYRSYTETDDIVIWFWELLSEWSPEKKAKLLQFATGTSRLPLSGFK DMHGSDGPRKFTIEKVGHISQLPKAHTCFNRLDIPPYNSKEELEQKLTIAIQETAGFGTE ; ;SHMDEYQRKIAYMYDRPEMAVNDAQLQLKVSRATTFEDAYDIISKLSVSDMKKKLLIRFRNEDGLDYGGVSREFFYILSH AIFNPGYSLFEYATDDNYGLQISPLSSVNPDFRSYFRFVGRVMGLAIYHRRYLDVQFVLPFYKRILQKPLCLEDVKDVDE VYYESLKWIKNNDVDESLCLNFSVEENRFGESVTVDLIPNGRNIAVNNQNKMNYLKALTEHKLVTSTEEQFNALKGGLNE LIPDSVLQIFNENELDTLLNGKRDIDVQDWKRFTDYRSYTETDDIVIWFWELLSEWSPEKKAKLLQFATGTSRLPLSGFK DMHGSDGPRKFTIEKVGHISQLPKAHTCFNRLDIPPYNSKEELEQKLTIAIQETAGFGTE ; C ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name 4-aminobutanenitrile _pdbx_entity_nonpoly.comp_id A1AIV # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 LEU n 1 4 LYS n 1 5 ARG n 1 6 ILE n 1 7 ASN n 1 8 ARG n 1 9 GLU n 1 10 LEU n 1 11 ALA n 1 12 ASP n 1 13 LEU n 1 14 GLY n 1 15 LYS n 1 16 ASP n 1 17 PRO n 1 18 PRO n 1 19 SER n 1 20 SER n 1 21 SER n 1 22 SER n 1 23 ALA n 1 24 GLY n 1 25 PRO n 1 26 VAL n 1 27 GLY n 1 28 ASP n 1 29 ASP n 1 30 LEU n 1 31 PHE n 1 32 HIS n 1 33 TRP n 1 34 GLN n 1 35 ALA n 1 36 THR n 1 37 ILE n 1 38 MET n 1 39 GLY n 1 40 PRO n 1 41 ALA n 1 42 ASP n 1 43 SER n 1 44 PRO n 1 45 TYR n 1 46 ALA n 1 47 GLY n 1 48 GLY n 1 49 VAL n 1 50 PHE n 1 51 PHE n 1 52 LEU n 1 53 SER n 1 54 ILE n 1 55 HIS n 1 56 PHE n 1 57 PRO n 1 58 THR n 1 59 ASP n 1 60 TYR n 1 61 PRO n 1 62 PHE n 1 63 LYS n 1 64 PRO n 1 65 PRO n 1 66 LYS n 1 67 VAL n 1 68 ASN n 1 69 PHE n 1 70 THR n 1 71 THR n 1 72 ARG n 1 73 ILE n 1 74 TYR n 1 75 HIS n 1 76 PRO n 1 77 ASN n 1 78 ILE n 1 79 ASN n 1 80 SER n 1 81 ASN n 1 82 GLY n 1 83 SER n 1 84 ILE n 1 85 CYS n 1 86 LEU n 1 87 ASP n 1 88 ILE n 1 89 LEU n 1 90 ARG n 1 91 ASP n 1 92 GLN n 1 93 TRP n 1 94 SER n 1 95 PRO n 1 96 ALA n 1 97 LEU n 1 98 THR n 1 99 ILE n 1 100 SER n 1 101 LYS n 1 102 VAL n 1 103 LEU n 1 104 LEU n 1 105 SER n 1 106 ILE n 1 107 SER n 1 108 SER n 1 109 LEU n 1 110 LEU n 1 111 THR n 1 112 ASP n 1 113 PRO n 1 114 ASN n 1 115 PRO n 1 116 ASP n 1 117 ASP n 1 118 PRO n 1 119 LEU n 1 120 VAL n 1 121 PRO n 1 122 GLU n 1 123 ILE n 1 124 ALA n 1 125 HIS n 1 126 VAL n 1 127 TYR n 1 128 LYS n 1 129 THR n 1 130 ASP n 1 131 ARG n 1 132 SER n 1 133 ARG n 1 134 TYR n 1 135 GLU n 1 136 LEU n 1 137 SER n 1 138 ALA n 1 139 ARG n 1 140 GLU n 1 141 TRP n 1 142 THR n 1 143 ARG n 1 144 LYS n 1 145 TYR n 1 146 ALA n 1 147 ILE n 1 148 GLY n 1 149 GLY n 1 150 LEU n 1 151 VAL n 1 152 PRO n 1 153 ARG n 2 1 GLY n 2 2 SER n 2 3 GLY n 2 4 GLY n 2 5 MET n 2 6 GLN n 2 7 ILE n 2 8 PHE n 2 9 VAL n 2 10 LYS n 2 11 THR n 2 12 LEU n 2 13 THR n 2 14 GLY n 2 15 LYS n 2 16 THR n 2 17 ILE n 2 18 THR n 2 19 LEU n 2 20 GLU n 2 21 VAL n 2 22 GLU n 2 23 SER n 2 24 SER n 2 25 ASP n 2 26 THR n 2 27 ILE n 2 28 ASP n 2 29 ASN n 2 30 VAL n 2 31 LYS n 2 32 SER n 2 33 LYS n 2 34 ILE n 2 35 GLN n 2 36 ASP n 2 37 LYS n 2 38 GLU n 2 39 GLY n 2 40 ILE n 2 41 PRO n 2 42 PRO n 2 43 ASP n 2 44 GLN n 2 45 GLN n 2 46 ARG n 2 47 LEU n 2 48 ILE n 2 49 PHE n 2 50 ALA n 2 51 GLY n 2 52 LYS n 2 53 GLN n 2 54 LEU n 2 55 GLU n 2 56 ASP n 2 57 GLY n 2 58 ARG n 2 59 THR n 2 60 LEU n 2 61 SER n 2 62 ASP n 2 63 TYR n 2 64 ASN n 2 65 ILE n 2 66 GLN n 2 67 LYS n 2 68 GLU n 2 69 SER n 2 70 THR n 2 71 LEU n 2 72 HIS n 2 73 LEU n 2 74 VAL n 2 75 LEU n 2 76 ARG n 2 77 LEU n 2 78 ARG n 2 79 GLY n 3 1 SER n 3 2 HIS n 3 3 MET n 3 4 ASP n 3 5 GLU n 3 6 TYR n 3 7 GLN n 3 8 ARG n 3 9 LYS n 3 10 ILE n 3 11 ALA n 3 12 TYR n 3 13 MET n 3 14 TYR n 3 15 ASP n 3 16 ARG n 3 17 PRO n 3 18 GLU n 3 19 MET n 3 20 ALA n 3 21 VAL n 3 22 ASN n 3 23 ASP n 3 24 ALA n 3 25 GLN n 3 26 LEU n 3 27 GLN n 3 28 LEU n 3 29 LYS n 3 30 VAL n 3 31 SER n 3 32 ARG n 3 33 ALA n 3 34 THR n 3 35 THR n 3 36 PHE n 3 37 GLU n 3 38 ASP n 3 39 ALA n 3 40 TYR n 3 41 ASP n 3 42 ILE n 3 43 ILE n 3 44 SER n 3 45 LYS n 3 46 LEU n 3 47 SER n 3 48 VAL n 3 49 SER n 3 50 ASP n 3 51 MET n 3 52 LYS n 3 53 LYS n 3 54 LYS n 3 55 LEU n 3 56 LEU n 3 57 ILE n 3 58 ARG n 3 59 PHE n 3 60 ARG n 3 61 ASN n 3 62 GLU n 3 63 ASP n 3 64 GLY n 3 65 LEU n 3 66 ASP n 3 67 TYR n 3 68 GLY n 3 69 GLY n 3 70 VAL n 3 71 SER n 3 72 ARG n 3 73 GLU n 3 74 PHE n 3 75 PHE n 3 76 TYR n 3 77 ILE n 3 78 LEU n 3 79 SER n 3 80 HIS n 3 81 ALA n 3 82 ILE n 3 83 PHE n 3 84 ASN n 3 85 PRO n 3 86 GLY n 3 87 TYR n 3 88 SER n 3 89 LEU n 3 90 PHE n 3 91 GLU n 3 92 TYR n 3 93 ALA n 3 94 THR n 3 95 ASP n 3 96 ASP n 3 97 ASN n 3 98 TYR n 3 99 GLY n 3 100 LEU n 3 101 GLN n 3 102 ILE n 3 103 SER n 3 104 PRO n 3 105 LEU n 3 106 SER n 3 107 SER n 3 108 VAL n 3 109 ASN n 3 110 PRO n 3 111 ASP n 3 112 PHE n 3 113 ARG n 3 114 SER n 3 115 TYR n 3 116 PHE n 3 117 ARG n 3 118 PHE n 3 119 VAL n 3 120 GLY n 3 121 ARG n 3 122 VAL n 3 123 MET n 3 124 GLY n 3 125 LEU n 3 126 ALA n 3 127 ILE n 3 128 TYR n 3 129 HIS n 3 130 ARG n 3 131 ARG n 3 132 TYR n 3 133 LEU n 3 134 ASP n 3 135 VAL n 3 136 GLN n 3 137 PHE n 3 138 VAL n 3 139 LEU n 3 140 PRO n 3 141 PHE n 3 142 TYR n 3 143 LYS n 3 144 ARG n 3 145 ILE n 3 146 LEU n 3 147 GLN n 3 148 LYS n 3 149 PRO n 3 150 LEU n 3 151 CYS n 3 152 LEU n 3 153 GLU n 3 154 ASP n 3 155 VAL n 3 156 LYS n 3 157 ASP n 3 158 VAL n 3 159 ASP n 3 160 GLU n 3 161 VAL n 3 162 TYR n 3 163 TYR n 3 164 GLU n 3 165 SER n 3 166 LEU n 3 167 LYS n 3 168 TRP n 3 169 ILE n 3 170 LYS n 3 171 ASN n 3 172 ASN n 3 173 ASP n 3 174 VAL n 3 175 ASP n 3 176 GLU n 3 177 SER n 3 178 LEU n 3 179 CYS n 3 180 LEU n 3 181 ASN n 3 182 PHE n 3 183 SER n 3 184 VAL n 3 185 GLU n 3 186 GLU n 3 187 ASN n 3 188 ARG n 3 189 PHE n 3 190 GLY n 3 191 GLU n 3 192 SER n 3 193 VAL n 3 194 THR n 3 195 VAL n 3 196 ASP n 3 197 LEU n 3 198 ILE n 3 199 PRO n 3 200 ASN n 3 201 GLY n 3 202 ARG n 3 203 ASN n 3 204 ILE n 3 205 ALA n 3 206 VAL n 3 207 ASN n 3 208 ASN n 3 209 GLN n 3 210 ASN n 3 211 LYS n 3 212 MET n 3 213 ASN n 3 214 TYR n 3 215 LEU n 3 216 LYS n 3 217 ALA n 3 218 LEU n 3 219 THR n 3 220 GLU n 3 221 HIS n 3 222 LYS n 3 223 LEU n 3 224 VAL n 3 225 THR n 3 226 SER n 3 227 THR n 3 228 GLU n 3 229 GLU n 3 230 GLN n 3 231 PHE n 3 232 ASN n 3 233 ALA n 3 234 LEU n 3 235 LYS n 3 236 GLY n 3 237 GLY n 3 238 LEU n 3 239 ASN n 3 240 GLU n 3 241 LEU n 3 242 ILE n 3 243 PRO n 3 244 ASP n 3 245 SER n 3 246 VAL n 3 247 LEU n 3 248 GLN n 3 249 ILE n 3 250 PHE n 3 251 ASN n 3 252 GLU n 3 253 ASN n 3 254 GLU n 3 255 LEU n 3 256 ASP n 3 257 THR n 3 258 LEU n 3 259 LEU n 3 260 ASN n 3 261 GLY n 3 262 LYS n 3 263 ARG n 3 264 ASP n 3 265 ILE n 3 266 ASP n 3 267 VAL n 3 268 GLN n 3 269 ASP n 3 270 TRP n 3 271 LYS n 3 272 ARG n 3 273 PHE n 3 274 THR n 3 275 ASP n 3 276 TYR n 3 277 ARG n 3 278 SER n 3 279 TYR n 3 280 THR n 3 281 GLU n 3 282 THR n 3 283 ASP n 3 284 ASP n 3 285 ILE n 3 286 VAL n 3 287 ILE n 3 288 TRP n 3 289 PHE n 3 290 TRP n 3 291 GLU n 3 292 LEU n 3 293 LEU n 3 294 SER n 3 295 GLU n 3 296 TRP n 3 297 SER n 3 298 PRO n 3 299 GLU n 3 300 LYS n 3 301 LYS n 3 302 ALA n 3 303 LYS n 3 304 LEU n 3 305 LEU n 3 306 GLN n 3 307 PHE n 3 308 ALA n 3 309 THR n 3 310 GLY n 3 311 THR n 3 312 SER n 3 313 ARG n 3 314 LEU n 3 315 PRO n 3 316 LEU n 3 317 SER n 3 318 GLY n 3 319 PHE n 3 320 LYS n 3 321 ASP n 3 322 MET n 3 323 HIS n 3 324 GLY n 3 325 SER n 3 326 ASP n 3 327 GLY n 3 328 PRO n 3 329 ARG n 3 330 LYS n 3 331 PHE n 3 332 THR n 3 333 ILE n 3 334 GLU n 3 335 LYS n 3 336 VAL n 3 337 GLY n 3 338 HIS n 3 339 ILE n 3 340 SER n 3 341 GLN n 3 342 LEU n 3 343 PRO n 3 344 LYS n 3 345 ALA n 3 346 HIS n 3 347 THR n 3 348 CYS n 3 349 PHE n 3 350 ASN n 3 351 ARG n 3 352 LEU n 3 353 ASP n 3 354 ILE n 3 355 PRO n 3 356 PRO n 3 357 TYR n 3 358 ASN n 3 359 SER n 3 360 LYS n 3 361 GLU n 3 362 GLU n 3 363 LEU n 3 364 GLU n 3 365 GLN n 3 366 LYS n 3 367 LEU n 3 368 THR n 3 369 ILE n 3 370 ALA n 3 371 ILE n 3 372 GLN n 3 373 GLU n 3 374 THR n 3 375 ALA n 3 376 GLY n 3 377 PHE n 3 378 GLY n 3 379 THR n 3 380 GLU n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 153 ? ? 'ubc4, SPBC119.02' ? '972 / ATCC 24843' ? ? ? ? 'Schizosaccharomyces pombe 972h-' 284812 ? ? 24843 ? ? ? ? ? 'Escherichia coli BL21(DE3)' 469008 ? ? ? ? ? ? ? ? ? ? ? ? ? ? plasmid ? ? ? pET29b+ ? ? 2 1 sample 'Biological sequence' 1 79 ? ? 'uep1, ubi2, SPAC1805.12c' ? '972 / ATCC 24843' ? ? ? ? 'Schizosaccharomyces pombe 972h-' 284812 ? ? 24843 ? ? ? ? ? 'Escherichia coli BL21(DE3)' 469008 ? ? ? ? ? ? ? ? ? ? ? ? ? ? plasmid ? ? ? pTXB1 ? ? 3 1 sample 'Biological sequence' 1 380 ? ? 'pub2, SPAC1805.15c' ? '972 / ATCC 24843' ? ? ? ? 'Schizosaccharomyces pombe 972h-' 284812 ? ? 24843 ? ? ? ? ? 'Escherichia coli BL21(DE3)' 469008 ? ? ? ? ? ? ? ? ? ? ? ? ? ? plasmid ? ? ? pSMT3 ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A1AIV non-polymer . 4-aminobutanenitrile ? 'C4 H8 N2' 84.120 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 ALA 2 2 2 ALA ALA A . n A 1 3 LEU 3 3 3 LEU LEU A . n A 1 4 LYS 4 4 4 LYS LYS A . n A 1 5 ARG 5 5 5 ARG ARG A . n A 1 6 ILE 6 6 6 ILE ILE A . n A 1 7 ASN 7 7 7 ASN ASN A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 GLU 9 9 9 GLU GLU A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 ASP 12 12 12 ASP ASP A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 LYS 15 15 15 LYS LYS A . n A 1 16 ASP 16 16 16 ASP ASP A . n A 1 17 PRO 17 17 17 PRO PRO A . n A 1 18 PRO 18 18 18 PRO PRO A . n A 1 19 SER 19 19 19 SER SER A . n A 1 20 SER 20 20 20 SER SER A . n A 1 21 SER 21 21 21 SER SER A . n A 1 22 SER 22 22 22 SER SER A . n A 1 23 ALA 23 23 23 ALA ALA A . n A 1 24 GLY 24 24 24 GLY GLY A . n A 1 25 PRO 25 25 25 PRO PRO A . n A 1 26 VAL 26 26 26 VAL VAL A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 ASP 28 28 28 ASP ASP A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 PHE 31 31 31 PHE PHE A . n A 1 32 HIS 32 32 32 HIS HIS A . n A 1 33 TRP 33 33 33 TRP TRP A . n A 1 34 GLN 34 34 34 GLN GLN A . n A 1 35 ALA 35 35 35 ALA ALA A . n A 1 36 THR 36 36 36 THR THR A . n A 1 37 ILE 37 37 37 ILE ILE A . n A 1 38 MET 38 38 38 MET MET A . n A 1 39 GLY 39 39 39 GLY GLY A . n A 1 40 PRO 40 40 40 PRO PRO A . n A 1 41 ALA 41 41 41 ALA ALA A . n A 1 42 ASP 42 42 42 ASP ASP A . n A 1 43 SER 43 43 43 SER SER A . n A 1 44 PRO 44 44 44 PRO PRO A . n A 1 45 TYR 45 45 45 TYR TYR A . n A 1 46 ALA 46 46 46 ALA ALA A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 VAL 49 49 49 VAL VAL A . n A 1 50 PHE 50 50 50 PHE PHE A . n A 1 51 PHE 51 51 51 PHE PHE A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 SER 53 53 53 SER SER A . n A 1 54 ILE 54 54 54 ILE ILE A . n A 1 55 HIS 55 55 55 HIS HIS A . n A 1 56 PHE 56 56 56 PHE PHE A . n A 1 57 PRO 57 57 57 PRO PRO A . n A 1 58 THR 58 58 58 THR THR A . n A 1 59 ASP 59 59 59 ASP ASP A . n A 1 60 TYR 60 60 60 TYR TYR A . n A 1 61 PRO 61 61 61 PRO PRO A . n A 1 62 PHE 62 62 62 PHE PHE A . n A 1 63 LYS 63 63 63 LYS LYS A . n A 1 64 PRO 64 64 64 PRO PRO A . n A 1 65 PRO 65 65 65 PRO PRO A . n A 1 66 LYS 66 66 66 LYS LYS A . n A 1 67 VAL 67 67 67 VAL VAL A . n A 1 68 ASN 68 68 68 ASN ASN A . n A 1 69 PHE 69 69 69 PHE PHE A . n A 1 70 THR 70 70 70 THR THR A . n A 1 71 THR 71 71 71 THR THR A . n A 1 72 ARG 72 72 72 ARG ARG A . n A 1 73 ILE 73 73 73 ILE ILE A . n A 1 74 TYR 74 74 74 TYR TYR A . n A 1 75 HIS 75 75 75 HIS HIS A . n A 1 76 PRO 76 76 76 PRO PRO A . n A 1 77 ASN 77 77 77 ASN ASN A . n A 1 78 ILE 78 78 78 ILE ILE A . n A 1 79 ASN 79 79 79 ASN ASN A . n A 1 80 SER 80 80 80 SER SER A . n A 1 81 ASN 81 81 81 ASN ASN A . n A 1 82 GLY 82 82 82 GLY GLY A . n A 1 83 SER 83 83 83 SER SER A . n A 1 84 ILE 84 84 84 ILE ILE A . n A 1 85 CYS 85 85 85 CYS CYS A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 ASP 87 87 87 ASP ASP A . n A 1 88 ILE 88 88 88 ILE ILE A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 ARG 90 90 90 ARG ARG A . n A 1 91 ASP 91 91 91 ASP ASP A . n A 1 92 GLN 92 92 92 GLN GLN A . n A 1 93 TRP 93 93 93 TRP TRP A . n A 1 94 SER 94 94 94 SER SER A . n A 1 95 PRO 95 95 95 PRO PRO A . n A 1 96 ALA 96 96 96 ALA ALA A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 THR 98 98 98 THR THR A . n A 1 99 ILE 99 99 99 ILE ILE A . n A 1 100 SER 100 100 100 SER SER A . n A 1 101 LYS 101 101 101 LYS LYS A . n A 1 102 VAL 102 102 102 VAL VAL A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 LEU 104 104 104 LEU LEU A . n A 1 105 SER 105 105 105 SER SER A . n A 1 106 ILE 106 106 106 ILE ILE A . n A 1 107 SER 107 107 107 SER SER A . n A 1 108 SER 108 108 108 SER SER A . n A 1 109 LEU 109 109 109 LEU LEU A . n A 1 110 LEU 110 110 110 LEU LEU A . n A 1 111 THR 111 111 111 THR THR A . n A 1 112 ASP 112 112 112 ASP ASP A . n A 1 113 PRO 113 113 113 PRO PRO A . n A 1 114 ASN 114 114 114 ASN ASN A . n A 1 115 PRO 115 115 115 PRO PRO A . n A 1 116 ASP 116 116 116 ASP ASP A . n A 1 117 ASP 117 117 117 ASP ASP A . n A 1 118 PRO 118 118 118 PRO PRO A . n A 1 119 LEU 119 119 119 LEU LEU A . n A 1 120 VAL 120 120 120 VAL VAL A . n A 1 121 PRO 121 121 121 PRO PRO A . n A 1 122 GLU 122 122 122 GLU GLU A . n A 1 123 ILE 123 123 123 ILE ILE A . n A 1 124 ALA 124 124 124 ALA ALA A . n A 1 125 HIS 125 125 125 HIS HIS A . n A 1 126 VAL 126 126 126 VAL VAL A . n A 1 127 TYR 127 127 127 TYR TYR A . n A 1 128 LYS 128 128 128 LYS LYS A . n A 1 129 THR 129 129 129 THR THR A . n A 1 130 ASP 130 130 130 ASP ASP A . n A 1 131 ARG 131 131 131 ARG ARG A . n A 1 132 SER 132 132 132 SER SER A . n A 1 133 ARG 133 133 133 ARG ARG A . n A 1 134 TYR 134 134 134 TYR TYR A . n A 1 135 GLU 135 135 135 GLU GLU A . n A 1 136 LEU 136 136 136 LEU LEU A . n A 1 137 SER 137 137 137 SER SER A . n A 1 138 ALA 138 138 138 ALA ALA A . n A 1 139 ARG 139 139 139 ARG ARG A . n A 1 140 GLU 140 140 140 GLU GLU A . n A 1 141 TRP 141 141 141 TRP TRP A . n A 1 142 THR 142 142 142 THR THR A . n A 1 143 ARG 143 143 143 ARG ARG A . n A 1 144 LYS 144 144 144 LYS LYS A . n A 1 145 TYR 145 145 145 TYR TYR A . n A 1 146 ALA 146 146 146 ALA ALA A . n A 1 147 ILE 147 147 147 ILE ILE A . n A 1 148 GLY 148 148 ? ? ? A . n A 1 149 GLY 149 149 ? ? ? A . n A 1 150 LEU 150 150 ? ? ? A . n A 1 151 VAL 151 151 ? ? ? A . n A 1 152 PRO 152 152 ? ? ? A . n A 1 153 ARG 153 153 ? ? ? A . n B 2 1 GLY 1 -3 ? ? ? B . n B 2 2 SER 2 -2 ? ? ? B . n B 2 3 GLY 3 -1 ? ? ? B . n B 2 4 GLY 4 0 ? ? ? B . n B 2 5 MET 5 1 1 MET MET B . n B 2 6 GLN 6 2 2 GLN GLN B . n B 2 7 ILE 7 3 3 ILE ILE B . n B 2 8 PHE 8 4 4 PHE PHE B . n B 2 9 VAL 9 5 5 VAL VAL B . n B 2 10 LYS 10 6 6 LYS LYS B . n B 2 11 THR 11 7 7 THR THR B . n B 2 12 LEU 12 8 8 LEU LEU B . n B 2 13 THR 13 9 9 THR THR B . n B 2 14 GLY 14 10 10 GLY GLY B . n B 2 15 LYS 15 11 11 LYS LYS B . n B 2 16 THR 16 12 12 THR THR B . n B 2 17 ILE 17 13 13 ILE ILE B . n B 2 18 THR 18 14 14 THR THR B . n B 2 19 LEU 19 15 15 LEU LEU B . n B 2 20 GLU 20 16 16 GLU GLU B . n B 2 21 VAL 21 17 17 VAL VAL B . n B 2 22 GLU 22 18 18 GLU GLU B . n B 2 23 SER 23 19 19 SER SER B . n B 2 24 SER 24 20 20 SER SER B . n B 2 25 ASP 25 21 21 ASP ASP B . n B 2 26 THR 26 22 22 THR THR B . n B 2 27 ILE 27 23 23 ILE ILE B . n B 2 28 ASP 28 24 24 ASP ASP B . n B 2 29 ASN 29 25 25 ASN ASN B . n B 2 30 VAL 30 26 26 VAL VAL B . n B 2 31 LYS 31 27 27 LYS LYS B . n B 2 32 SER 32 28 28 SER SER B . n B 2 33 LYS 33 29 29 LYS LYS B . n B 2 34 ILE 34 30 30 ILE ILE B . n B 2 35 GLN 35 31 31 GLN GLN B . n B 2 36 ASP 36 32 32 ASP ASP B . n B 2 37 LYS 37 33 33 LYS LYS B . n B 2 38 GLU 38 34 34 GLU GLU B . n B 2 39 GLY 39 35 35 GLY GLY B . n B 2 40 ILE 40 36 36 ILE ILE B . n B 2 41 PRO 41 37 37 PRO PRO B . n B 2 42 PRO 42 38 38 PRO PRO B . n B 2 43 ASP 43 39 39 ASP ASP B . n B 2 44 GLN 44 40 40 GLN GLN B . n B 2 45 GLN 45 41 41 GLN GLN B . n B 2 46 ARG 46 42 42 ARG ARG B . n B 2 47 LEU 47 43 43 LEU LEU B . n B 2 48 ILE 48 44 44 ILE ILE B . n B 2 49 PHE 49 45 45 PHE PHE B . n B 2 50 ALA 50 46 46 ALA ALA B . n B 2 51 GLY 51 47 47 GLY GLY B . n B 2 52 LYS 52 48 48 LYS LYS B . n B 2 53 GLN 53 49 49 GLN GLN B . n B 2 54 LEU 54 50 50 LEU LEU B . n B 2 55 GLU 55 51 51 GLU GLU B . n B 2 56 ASP 56 52 52 ASP ASP B . n B 2 57 GLY 57 53 53 GLY GLY B . n B 2 58 ARG 58 54 54 ARG ARG B . n B 2 59 THR 59 55 55 THR THR B . n B 2 60 LEU 60 56 56 LEU LEU B . n B 2 61 SER 61 57 57 SER SER B . n B 2 62 ASP 62 58 58 ASP ASP B . n B 2 63 TYR 63 59 59 TYR TYR B . n B 2 64 ASN 64 60 60 ASN ASN B . n B 2 65 ILE 65 61 61 ILE ILE B . n B 2 66 GLN 66 62 62 GLN GLN B . n B 2 67 LYS 67 63 63 LYS LYS B . n B 2 68 GLU 68 64 64 GLU GLU B . n B 2 69 SER 69 65 65 SER SER B . n B 2 70 THR 70 66 66 THR THR B . n B 2 71 LEU 71 67 67 LEU LEU B . n B 2 72 HIS 72 68 68 HIS HIS B . n B 2 73 LEU 73 69 69 LEU LEU B . n B 2 74 VAL 74 70 70 VAL VAL B . n B 2 75 LEU 75 71 71 LEU LEU B . n B 2 76 ARG 76 72 72 ARG ARG B . n B 2 77 LEU 77 73 73 LEU LEU B . n B 2 78 ARG 78 74 74 ARG ARG B . n B 2 79 GLY 79 75 75 GLY GLY B . n C 3 1 SER 1 292 292 SER SER C . n C 3 2 HIS 2 293 293 HIS HIS C . n C 3 3 MET 3 294 294 MET MET C . n C 3 4 ASP 4 295 295 ASP ASP C . n C 3 5 GLU 5 296 296 GLU GLU C . n C 3 6 TYR 6 297 297 TYR TYR C . n C 3 7 GLN 7 298 298 GLN GLN C . n C 3 8 ARG 8 299 299 ARG ARG C . n C 3 9 LYS 9 300 300 LYS LYS C . n C 3 10 ILE 10 301 301 ILE ILE C . n C 3 11 ALA 11 302 302 ALA ALA C . n C 3 12 TYR 12 303 303 TYR TYR C . n C 3 13 MET 13 304 304 MET MET C . n C 3 14 TYR 14 305 305 TYR TYR C . n C 3 15 ASP 15 306 306 ASP ASP C . n C 3 16 ARG 16 307 307 ARG ARG C . n C 3 17 PRO 17 308 308 PRO PRO C . n C 3 18 GLU 18 309 309 GLU GLU C . n C 3 19 MET 19 310 310 MET MET C . n C 3 20 ALA 20 311 311 ALA ALA C . n C 3 21 VAL 21 312 312 VAL VAL C . n C 3 22 ASN 22 313 313 ASN ASN C . n C 3 23 ASP 23 314 314 ASP ASP C . n C 3 24 ALA 24 315 315 ALA ALA C . n C 3 25 GLN 25 316 316 GLN GLN C . n C 3 26 LEU 26 317 317 LEU LEU C . n C 3 27 GLN 27 318 318 GLN GLN C . n C 3 28 LEU 28 319 319 LEU LEU C . n C 3 29 LYS 29 320 320 LYS LYS C . n C 3 30 VAL 30 321 321 VAL VAL C . n C 3 31 SER 31 322 322 SER SER C . n C 3 32 ARG 32 323 323 ARG ARG C . n C 3 33 ALA 33 324 324 ALA ALA C . n C 3 34 THR 34 325 325 THR THR C . n C 3 35 THR 35 326 326 THR THR C . n C 3 36 PHE 36 327 327 PHE PHE C . n C 3 37 GLU 37 328 328 GLU GLU C . n C 3 38 ASP 38 329 329 ASP ASP C . n C 3 39 ALA 39 330 330 ALA ALA C . n C 3 40 TYR 40 331 331 TYR TYR C . n C 3 41 ASP 41 332 332 ASP ASP C . n C 3 42 ILE 42 333 333 ILE ILE C . n C 3 43 ILE 43 334 334 ILE ILE C . n C 3 44 SER 44 335 335 SER SER C . n C 3 45 LYS 45 336 336 LYS LYS C . n C 3 46 LEU 46 337 337 LEU LEU C . n C 3 47 SER 47 338 338 SER SER C . n C 3 48 VAL 48 339 339 VAL VAL C . n C 3 49 SER 49 340 340 SER SER C . n C 3 50 ASP 50 341 341 ASP ASP C . n C 3 51 MET 51 342 342 MET MET C . n C 3 52 LYS 52 343 343 LYS LYS C . n C 3 53 LYS 53 344 344 LYS LYS C . n C 3 54 LYS 54 345 345 LYS LYS C . n C 3 55 LEU 55 346 346 LEU LEU C . n C 3 56 LEU 56 347 347 LEU LEU C . n C 3 57 ILE 57 348 348 ILE ILE C . n C 3 58 ARG 58 349 349 ARG ARG C . n C 3 59 PHE 59 350 350 PHE PHE C . n C 3 60 ARG 60 351 351 ARG ARG C . n C 3 61 ASN 61 352 352 ASN ASN C . n C 3 62 GLU 62 353 353 GLU GLU C . n C 3 63 ASP 63 354 354 ASP ASP C . n C 3 64 GLY 64 355 355 GLY GLY C . n C 3 65 LEU 65 356 356 LEU LEU C . n C 3 66 ASP 66 357 357 ASP ASP C . n C 3 67 TYR 67 358 358 TYR TYR C . n C 3 68 GLY 68 359 359 GLY GLY C . n C 3 69 GLY 69 360 360 GLY GLY C . n C 3 70 VAL 70 361 361 VAL VAL C . n C 3 71 SER 71 362 362 SER SER C . n C 3 72 ARG 72 363 363 ARG ARG C . n C 3 73 GLU 73 364 364 GLU GLU C . n C 3 74 PHE 74 365 365 PHE PHE C . n C 3 75 PHE 75 366 366 PHE PHE C . n C 3 76 TYR 76 367 367 TYR TYR C . n C 3 77 ILE 77 368 368 ILE ILE C . n C 3 78 LEU 78 369 369 LEU LEU C . n C 3 79 SER 79 370 370 SER SER C . n C 3 80 HIS 80 371 371 HIS HIS C . n C 3 81 ALA 81 372 372 ALA ALA C . n C 3 82 ILE 82 373 373 ILE ILE C . n C 3 83 PHE 83 374 374 PHE PHE C . n C 3 84 ASN 84 375 375 ASN ASN C . n C 3 85 PRO 85 376 376 PRO PRO C . n C 3 86 GLY 86 377 377 GLY GLY C . n C 3 87 TYR 87 378 378 TYR TYR C . n C 3 88 SER 88 379 379 SER SER C . n C 3 89 LEU 89 380 380 LEU LEU C . n C 3 90 PHE 90 381 381 PHE PHE C . n C 3 91 GLU 91 382 382 GLU GLU C . n C 3 92 TYR 92 383 383 TYR TYR C . n C 3 93 ALA 93 384 384 ALA ALA C . n C 3 94 THR 94 385 385 THR THR C . n C 3 95 ASP 95 386 386 ASP ASP C . n C 3 96 ASP 96 387 387 ASP ASP C . n C 3 97 ASN 97 388 388 ASN ASN C . n C 3 98 TYR 98 389 389 TYR TYR C . n C 3 99 GLY 99 390 390 GLY GLY C . n C 3 100 LEU 100 391 391 LEU LEU C . n C 3 101 GLN 101 392 392 GLN GLN C . n C 3 102 ILE 102 393 393 ILE ILE C . n C 3 103 SER 103 394 394 SER SER C . n C 3 104 PRO 104 395 395 PRO PRO C . n C 3 105 LEU 105 396 396 LEU LEU C . n C 3 106 SER 106 397 397 SER SER C . n C 3 107 SER 107 398 398 SER SER C . n C 3 108 VAL 108 399 399 VAL VAL C . n C 3 109 ASN 109 400 400 ASN ASN C . n C 3 110 PRO 110 401 401 PRO PRO C . n C 3 111 ASP 111 402 402 ASP ASP C . n C 3 112 PHE 112 403 403 PHE PHE C . n C 3 113 ARG 113 404 404 ARG ARG C . n C 3 114 SER 114 405 405 SER SER C . n C 3 115 TYR 115 406 406 TYR TYR C . n C 3 116 PHE 116 407 407 PHE PHE C . n C 3 117 ARG 117 408 408 ARG ARG C . n C 3 118 PHE 118 409 409 PHE PHE C . n C 3 119 VAL 119 410 410 VAL VAL C . n C 3 120 GLY 120 411 411 GLY GLY C . n C 3 121 ARG 121 412 412 ARG ARG C . n C 3 122 VAL 122 413 413 VAL VAL C . n C 3 123 MET 123 414 414 MET MET C . n C 3 124 GLY 124 415 415 GLY GLY C . n C 3 125 LEU 125 416 416 LEU LEU C . n C 3 126 ALA 126 417 417 ALA ALA C . n C 3 127 ILE 127 418 418 ILE ILE C . n C 3 128 TYR 128 419 419 TYR TYR C . n C 3 129 HIS 129 420 420 HIS HIS C . n C 3 130 ARG 130 421 421 ARG ARG C . n C 3 131 ARG 131 422 422 ARG ARG C . n C 3 132 TYR 132 423 423 TYR TYR C . n C 3 133 LEU 133 424 424 LEU LEU C . n C 3 134 ASP 134 425 425 ASP ASP C . n C 3 135 VAL 135 426 426 VAL VAL C . n C 3 136 GLN 136 427 427 GLN GLN C . n C 3 137 PHE 137 428 428 PHE PHE C . n C 3 138 VAL 138 429 429 VAL VAL C . n C 3 139 LEU 139 430 430 LEU LEU C . n C 3 140 PRO 140 431 431 PRO PRO C . n C 3 141 PHE 141 432 432 PHE PHE C . n C 3 142 TYR 142 433 433 TYR TYR C . n C 3 143 LYS 143 434 434 LYS LYS C . n C 3 144 ARG 144 435 435 ARG ARG C . n C 3 145 ILE 145 436 436 ILE ILE C . n C 3 146 LEU 146 437 437 LEU LEU C . n C 3 147 GLN 147 438 438 GLN GLN C . n C 3 148 LYS 148 439 439 LYS LYS C . n C 3 149 PRO 149 440 440 PRO PRO C . n C 3 150 LEU 150 441 441 LEU LEU C . n C 3 151 CYS 151 442 442 CYS CYS C . n C 3 152 LEU 152 443 443 LEU LEU C . n C 3 153 GLU 153 444 444 GLU GLU C . n C 3 154 ASP 154 445 445 ASP ASP C . n C 3 155 VAL 155 446 446 VAL VAL C . n C 3 156 LYS 156 447 447 LYS LYS C . n C 3 157 ASP 157 448 448 ASP ASP C . n C 3 158 VAL 158 449 449 VAL VAL C . n C 3 159 ASP 159 450 450 ASP ASP C . n C 3 160 GLU 160 451 451 GLU GLU C . n C 3 161 VAL 161 452 452 VAL VAL C . n C 3 162 TYR 162 453 453 TYR TYR C . n C 3 163 TYR 163 454 454 TYR TYR C . n C 3 164 GLU 164 455 455 GLU GLU C . n C 3 165 SER 165 456 456 SER SER C . n C 3 166 LEU 166 457 457 LEU LEU C . n C 3 167 LYS 167 458 458 LYS LYS C . n C 3 168 TRP 168 459 459 TRP TRP C . n C 3 169 ILE 169 460 460 ILE ILE C . n C 3 170 LYS 170 461 461 LYS LYS C . n C 3 171 ASN 171 462 462 ASN ASN C . n C 3 172 ASN 172 463 463 ASN ASN C . n C 3 173 ASP 173 464 464 ASP ASP C . n C 3 174 VAL 174 465 465 VAL VAL C . n C 3 175 ASP 175 466 466 ASP ASP C . n C 3 176 GLU 176 467 467 GLU GLU C . n C 3 177 SER 177 468 468 SER SER C . n C 3 178 LEU 178 469 469 LEU LEU C . n C 3 179 CYS 179 470 470 CYS CYS C . n C 3 180 LEU 180 471 471 LEU LEU C . n C 3 181 ASN 181 472 472 ASN ASN C . n C 3 182 PHE 182 473 473 PHE PHE C . n C 3 183 SER 183 474 474 SER SER C . n C 3 184 VAL 184 475 475 VAL VAL C . n C 3 185 GLU 185 476 476 GLU GLU C . n C 3 186 GLU 186 477 477 GLU GLU C . n C 3 187 ASN 187 478 478 ASN ASN C . n C 3 188 ARG 188 479 479 ARG ARG C . n C 3 189 PHE 189 480 480 PHE PHE C . n C 3 190 GLY 190 481 481 GLY GLY C . n C 3 191 GLU 191 482 482 GLU GLU C . n C 3 192 SER 192 483 483 SER SER C . n C 3 193 VAL 193 484 484 VAL VAL C . n C 3 194 THR 194 485 485 THR THR C . n C 3 195 VAL 195 486 486 VAL VAL C . n C 3 196 ASP 196 487 487 ASP ASP C . n C 3 197 LEU 197 488 488 LEU LEU C . n C 3 198 ILE 198 489 489 ILE ILE C . n C 3 199 PRO 199 490 490 PRO PRO C . n C 3 200 ASN 200 491 491 ASN ASN C . n C 3 201 GLY 201 492 492 GLY GLY C . n C 3 202 ARG 202 493 493 ARG ARG C . n C 3 203 ASN 203 494 494 ASN ASN C . n C 3 204 ILE 204 495 495 ILE ILE C . n C 3 205 ALA 205 496 496 ALA ALA C . n C 3 206 VAL 206 497 497 VAL VAL C . n C 3 207 ASN 207 498 498 ASN ASN C . n C 3 208 ASN 208 499 499 ASN ASN C . n C 3 209 GLN 209 500 500 GLN GLN C . n C 3 210 ASN 210 501 501 ASN ASN C . n C 3 211 LYS 211 502 502 LYS LYS C . n C 3 212 MET 212 503 503 MET MET C . n C 3 213 ASN 213 504 504 ASN ASN C . n C 3 214 TYR 214 505 505 TYR TYR C . n C 3 215 LEU 215 506 506 LEU LEU C . n C 3 216 LYS 216 507 507 LYS LYS C . n C 3 217 ALA 217 508 508 ALA ALA C . n C 3 218 LEU 218 509 509 LEU LEU C . n C 3 219 THR 219 510 510 THR THR C . n C 3 220 GLU 220 511 511 GLU GLU C . n C 3 221 HIS 221 512 512 HIS HIS C . n C 3 222 LYS 222 513 513 LYS LYS C . n C 3 223 LEU 223 514 514 LEU LEU C . n C 3 224 VAL 224 515 515 VAL VAL C . n C 3 225 THR 225 516 516 THR THR C . n C 3 226 SER 226 517 517 SER SER C . n C 3 227 THR 227 518 518 THR THR C . n C 3 228 GLU 228 519 519 GLU GLU C . n C 3 229 GLU 229 520 520 GLU GLU C . n C 3 230 GLN 230 521 521 GLN GLN C . n C 3 231 PHE 231 522 522 PHE PHE C . n C 3 232 ASN 232 523 523 ASN ASN C . n C 3 233 ALA 233 524 524 ALA ALA C . n C 3 234 LEU 234 525 525 LEU LEU C . n C 3 235 LYS 235 526 526 LYS LYS C . n C 3 236 GLY 236 527 527 GLY GLY C . n C 3 237 GLY 237 528 528 GLY GLY C . n C 3 238 LEU 238 529 529 LEU LEU C . n C 3 239 ASN 239 530 530 ASN ASN C . n C 3 240 GLU 240 531 531 GLU GLU C . n C 3 241 LEU 241 532 532 LEU LEU C . n C 3 242 ILE 242 533 533 ILE ILE C . n C 3 243 PRO 243 534 534 PRO PRO C . n C 3 244 ASP 244 535 535 ASP ASP C . n C 3 245 SER 245 536 536 SER SER C . n C 3 246 VAL 246 537 537 VAL VAL C . n C 3 247 LEU 247 538 538 LEU LEU C . n C 3 248 GLN 248 539 539 GLN GLN C . n C 3 249 ILE 249 540 540 ILE ILE C . n C 3 250 PHE 250 541 541 PHE PHE C . n C 3 251 ASN 251 542 542 ASN ASN C . n C 3 252 GLU 252 543 543 GLU GLU C . n C 3 253 ASN 253 544 544 ASN ASN C . n C 3 254 GLU 254 545 545 GLU GLU C . n C 3 255 LEU 255 546 546 LEU LEU C . n C 3 256 ASP 256 547 547 ASP ASP C . n C 3 257 THR 257 548 548 THR THR C . n C 3 258 LEU 258 549 549 LEU LEU C . n C 3 259 LEU 259 550 550 LEU LEU C . n C 3 260 ASN 260 551 551 ASN ASN C . n C 3 261 GLY 261 552 552 GLY GLY C . n C 3 262 LYS 262 553 553 LYS LYS C . n C 3 263 ARG 263 554 554 ARG ARG C . n C 3 264 ASP 264 555 555 ASP ASP C . n C 3 265 ILE 265 556 556 ILE ILE C . n C 3 266 ASP 266 557 557 ASP ASP C . n C 3 267 VAL 267 558 558 VAL VAL C . n C 3 268 GLN 268 559 559 GLN GLN C . n C 3 269 ASP 269 560 560 ASP ASP C . n C 3 270 TRP 270 561 561 TRP TRP C . n C 3 271 LYS 271 562 562 LYS LYS C . n C 3 272 ARG 272 563 563 ARG ARG C . n C 3 273 PHE 273 564 564 PHE PHE C . n C 3 274 THR 274 565 565 THR THR C . n C 3 275 ASP 275 566 566 ASP ASP C . n C 3 276 TYR 276 567 567 TYR TYR C . n C 3 277 ARG 277 568 568 ARG ARG C . n C 3 278 SER 278 569 569 SER SER C . n C 3 279 TYR 279 570 570 TYR TYR C . n C 3 280 THR 280 571 571 THR THR C . n C 3 281 GLU 281 572 572 GLU GLU C . n C 3 282 THR 282 573 573 THR THR C . n C 3 283 ASP 283 574 574 ASP ASP C . n C 3 284 ASP 284 575 575 ASP ASP C . n C 3 285 ILE 285 576 576 ILE ILE C . n C 3 286 VAL 286 577 577 VAL VAL C . n C 3 287 ILE 287 578 578 ILE ILE C . n C 3 288 TRP 288 579 579 TRP TRP C . n C 3 289 PHE 289 580 580 PHE PHE C . n C 3 290 TRP 290 581 581 TRP TRP C . n C 3 291 GLU 291 582 582 GLU GLU C . n C 3 292 LEU 292 583 583 LEU LEU C . n C 3 293 LEU 293 584 584 LEU LEU C . n C 3 294 SER 294 585 585 SER SER C . n C 3 295 GLU 295 586 586 GLU GLU C . n C 3 296 TRP 296 587 587 TRP TRP C . n C 3 297 SER 297 588 588 SER SER C . n C 3 298 PRO 298 589 589 PRO PRO C . n C 3 299 GLU 299 590 590 GLU GLU C . n C 3 300 LYS 300 591 591 LYS LYS C . n C 3 301 LYS 301 592 592 LYS LYS C . n C 3 302 ALA 302 593 593 ALA ALA C . n C 3 303 LYS 303 594 594 LYS LYS C . n C 3 304 LEU 304 595 595 LEU LEU C . n C 3 305 LEU 305 596 596 LEU LEU C . n C 3 306 GLN 306 597 597 GLN GLN C . n C 3 307 PHE 307 598 598 PHE PHE C . n C 3 308 ALA 308 599 599 ALA ALA C . n C 3 309 THR 309 600 600 THR THR C . n C 3 310 GLY 310 601 601 GLY GLY C . n C 3 311 THR 311 602 602 THR THR C . n C 3 312 SER 312 603 603 SER SER C . n C 3 313 ARG 313 604 604 ARG ARG C . n C 3 314 LEU 314 605 605 LEU LEU C . n C 3 315 PRO 315 606 606 PRO PRO C . n C 3 316 LEU 316 607 607 LEU LEU C . n C 3 317 SER 317 608 608 SER SER C . n C 3 318 GLY 318 609 609 GLY GLY C . n C 3 319 PHE 319 610 610 PHE PHE C . n C 3 320 LYS 320 611 611 LYS LYS C . n C 3 321 ASP 321 612 612 ASP ASP C . n C 3 322 MET 322 613 613 MET MET C . n C 3 323 HIS 323 614 614 HIS HIS C . n C 3 324 GLY 324 615 615 GLY GLY C . n C 3 325 SER 325 616 616 SER SER C . n C 3 326 ASP 326 617 617 ASP ASP C . n C 3 327 GLY 327 618 618 GLY GLY C . n C 3 328 PRO 328 619 619 PRO PRO C . n C 3 329 ARG 329 620 620 ARG ARG C . n C 3 330 LYS 330 621 621 LYS LYS C . n C 3 331 PHE 331 622 622 PHE PHE C . n C 3 332 THR 332 623 623 THR THR C . n C 3 333 ILE 333 624 624 ILE ILE C . n C 3 334 GLU 334 625 625 GLU GLU C . n C 3 335 LYS 335 626 626 LYS LYS C . n C 3 336 VAL 336 627 627 VAL VAL C . n C 3 337 GLY 337 628 628 GLY GLY C . n C 3 338 HIS 338 629 629 HIS HIS C . n C 3 339 ILE 339 630 630 ILE ILE C . n C 3 340 SER 340 631 631 SER SER C . n C 3 341 GLN 341 632 632 GLN GLN C . n C 3 342 LEU 342 633 633 LEU LEU C . n C 3 343 PRO 343 634 634 PRO PRO C . n C 3 344 LYS 344 635 635 LYS LYS C . n C 3 345 ALA 345 636 636 ALA ALA C . n C 3 346 HIS 346 637 637 HIS HIS C . n C 3 347 THR 347 638 638 THR THR C . n C 3 348 CYS 348 639 639 CYS CYS C . n C 3 349 PHE 349 640 640 PHE PHE C . n C 3 350 ASN 350 641 641 ASN ASN C . n C 3 351 ARG 351 642 642 ARG ARG C . n C 3 352 LEU 352 643 643 LEU LEU C . n C 3 353 ASP 353 644 644 ASP ASP C . n C 3 354 ILE 354 645 645 ILE ILE C . n C 3 355 PRO 355 646 646 PRO PRO C . n C 3 356 PRO 356 647 647 PRO PRO C . n C 3 357 TYR 357 648 648 TYR TYR C . n C 3 358 ASN 358 649 649 ASN ASN C . n C 3 359 SER 359 650 650 SER SER C . n C 3 360 LYS 360 651 651 LYS LYS C . n C 3 361 GLU 361 652 652 GLU GLU C . n C 3 362 GLU 362 653 653 GLU GLU C . n C 3 363 LEU 363 654 654 LEU LEU C . n C 3 364 GLU 364 655 655 GLU GLU C . n C 3 365 GLN 365 656 656 GLN GLN C . n C 3 366 LYS 366 657 657 LYS LYS C . n C 3 367 LEU 367 658 658 LEU LEU C . n C 3 368 THR 368 659 659 THR THR C . n C 3 369 ILE 369 660 660 ILE ILE C . n C 3 370 ALA 370 661 661 ALA ALA C . n C 3 371 ILE 371 662 662 ILE ILE C . n C 3 372 GLN 372 663 663 GLN GLN C . n C 3 373 GLU 373 664 664 GLU GLU C . n C 3 374 THR 374 665 665 THR THR C . n C 3 375 ALA 375 666 666 ALA ALA C . n C 3 376 GLY 376 667 667 GLY GLY C . n C 3 377 PHE 377 668 668 PHE PHE C . n C 3 378 GLY 378 669 ? ? ? C . n C 3 379 THR 379 670 ? ? ? C . n C 3 380 GLU 380 671 ? ? ? C . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id A1AIV _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id A1AIV _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_nonpoly_scheme.asym_id D _pdbx_nonpoly_scheme.entity_id 4 _pdbx_nonpoly_scheme.mon_id A1AIV _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 76 _pdbx_nonpoly_scheme.pdb_mon_id A1AIV _pdbx_nonpoly_scheme.auth_mon_id LIG _pdbx_nonpoly_scheme.pdb_strand_id B _pdbx_nonpoly_scheme.pdb_ins_code . # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9B56 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9B56 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9B56 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 9B56 _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.002 ? 4983 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.464 ? 6747 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 10.882 ? 1877 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.039 ? 737 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.003 ? 873 ? f_plane_restr ? ? # _struct.entry_id 9B56 _struct.title 'Ubiquitin E2-Ub-E3 HECT tetrahedral transthiolation intermediate mimic - state 2' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9B56 _struct_keywords.text ;UBIQUITIN, E2, E3, HECT, NEDD4, RSP5, PUB2, UBC4, TRANSTHIOESTERIFICATION, THIOESTER, TRANSTHIOLATION, TETRAHEDRAL INTERMEDIATE, ADENYLATION, INHIBITOR, LIGASE, NUCLEUS, PHOSPHOPROTEIN, UBL CONJUGATION PATHWAY, UBL, ATP ATP-BINDING, AMP, NUCLEOTIDE-BINDING, ISOPEPTIDE BOND ; _struct_keywords.pdbx_keywords LIGASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP UBC4_SCHPO P46595 ? 1 ;MALKRINRELADLGKDPPSSCSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINS NGSICLDILRDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHVYKTDRSRYELSAREWTRKYAI ; 1 2 UNP RL402_SCHPO P0CH07 ? 2 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 1 3 UNP PUB2_SCHPO Q9UTG2 ? 3 ;DEYQRKIAYMYDRPEMAVNDAQLQLKVSRATTFEDAYDIISKLSVSDMKKKLLIRFRNEDGLDYGGVSREFFYILSHAIF NPGYSLFEYATDDNYGLQISPLSSVNPDFRSYFRFVGRVMGLAIYHRRYLDVQFVLPFYKRILQKPLCLEDVKDVDEVYY ESLKWIKNNDVDESLCLNFSVEENRFGESVTVDLIPNGRNIAVNNQNKMNYLKALTEHKLVTSTEEQFNALKGGLNELIP DSVLQIFNENELDTLLNGKRDIDVQDWKRFTDYRSYTETDDIVIWFWELLSEWSPEKKAKLLQFATGTSRLPLSGFKDMH GSDGPRKFTIEKVGHISQLPKAHTCFNRLDIPPYNSKEELEQKLTIAIQETAGFGTE ; 295 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9B56 A 1 ? 147 ? P46595 1 ? 147 ? 1 147 2 2 9B56 B 5 ? 79 ? P0CH07 1 ? 75 ? 1 75 3 3 9B56 C 4 ? 380 ? Q9UTG2 295 ? 671 ? 295 671 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 9B56 SER A 21 ? UNP P46595 CYS 21 'engineered mutation' 21 1 1 9B56 SER A 107 ? UNP P46595 CYS 107 'engineered mutation' 107 2 1 9B56 GLY A 148 ? UNP P46595 ? ? 'expression tag' 148 3 1 9B56 GLY A 149 ? UNP P46595 ? ? 'expression tag' 149 4 1 9B56 LEU A 150 ? UNP P46595 ? ? 'expression tag' 150 5 1 9B56 VAL A 151 ? UNP P46595 ? ? 'expression tag' 151 6 1 9B56 PRO A 152 ? UNP P46595 ? ? 'expression tag' 152 7 1 9B56 ARG A 153 ? UNP P46595 ? ? 'expression tag' 153 8 2 9B56 GLY B 1 ? UNP P0CH07 ? ? 'expression tag' -3 9 2 9B56 SER B 2 ? UNP P0CH07 ? ? 'expression tag' -2 10 2 9B56 GLY B 3 ? UNP P0CH07 ? ? 'expression tag' -1 11 2 9B56 GLY B 4 ? UNP P0CH07 ? ? 'expression tag' 0 12 3 9B56 SER C 1 ? UNP Q9UTG2 ? ? 'expression tag' 292 13 3 9B56 HIS C 2 ? UNP Q9UTG2 ? ? 'expression tag' 293 14 3 9B56 MET C 3 ? UNP Q9UTG2 ? ? 'expression tag' 294 15 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 'electron microscopy' 'not applicable' 2 1 'gel filtration' ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 LEU A 3 ? ASP A 16 ? LEU A 3 ASP A 16 1 ? 14 HELX_P HELX_P2 AA2 THR A 98 ? LEU A 110 ? THR A 98 LEU A 110 1 ? 13 HELX_P HELX_P3 AA3 VAL A 120 ? ASP A 130 ? VAL A 120 ASP A 130 1 ? 11 HELX_P HELX_P4 AA4 ASP A 130 ? ALA A 146 ? ASP A 130 ALA A 146 1 ? 17 HELX_P HELX_P5 AA5 THR B 26 ? GLY B 39 ? THR B 22 GLY B 35 1 ? 14 HELX_P HELX_P6 AA6 LEU B 60 ? ASN B 64 ? LEU B 56 ASN B 60 5 ? 5 HELX_P HELX_P7 AA7 HIS C 2 ? ASP C 15 ? HIS C 293 ASP C 306 1 ? 14 HELX_P HELX_P8 AA8 ARG C 16 ? ALA C 20 ? ARG C 307 ALA C 311 5 ? 5 HELX_P HELX_P9 AA9 THR C 34 ? SER C 44 ? THR C 325 SER C 335 1 ? 11 HELX_P HELX_P10 AB1 SER C 47 ? LYS C 52 ? SER C 338 LYS C 343 1 ? 6 HELX_P HELX_P11 AB2 ASP C 66 ? PHE C 83 ? ASP C 357 PHE C 374 1 ? 18 HELX_P HELX_P12 AB3 ASN C 84 ? SER C 88 ? ASN C 375 SER C 379 5 ? 5 HELX_P HELX_P13 AB4 PRO C 104 ? ASN C 109 ? PRO C 395 ASN C 400 5 ? 6 HELX_P HELX_P14 AB5 ASP C 111 ? HIS C 129 ? ASP C 402 HIS C 420 1 ? 19 HELX_P HELX_P15 AB6 VAL C 138 ? LEU C 146 ? VAL C 429 LEU C 437 1 ? 9 HELX_P HELX_P16 AB7 CYS C 151 ? GLU C 153 ? CYS C 442 GLU C 444 5 ? 3 HELX_P HELX_P17 AB8 ASP C 154 ? ASP C 159 ? ASP C 445 ASP C 450 1 ? 6 HELX_P HELX_P18 AB9 ASP C 159 ? ASN C 172 ? ASP C 450 ASN C 463 1 ? 14 HELX_P HELX_P19 AC1 ASN C 200 ? ILE C 204 ? ASN C 491 ILE C 495 5 ? 5 HELX_P HELX_P20 AC2 ASN C 210 ? VAL C 224 ? ASN C 501 VAL C 515 1 ? 15 HELX_P HELX_P21 AC3 THR C 227 ? ILE C 242 ? THR C 518 ILE C 533 1 ? 16 HELX_P HELX_P22 AC4 PRO C 243 ? GLN C 248 ? PRO C 534 GLN C 539 1 ? 6 HELX_P HELX_P23 AC5 ASN C 253 ? GLY C 261 ? ASN C 544 GLY C 552 1 ? 9 HELX_P HELX_P24 AC6 VAL C 267 ? PHE C 273 ? VAL C 558 PHE C 564 1 ? 7 HELX_P HELX_P25 AC7 ASP C 283 ? GLU C 295 ? ASP C 574 GLU C 586 1 ? 13 HELX_P HELX_P26 AC8 SER C 297 ? THR C 309 ? SER C 588 THR C 600 1 ? 13 HELX_P HELX_P27 AC9 THR C 347 ? PHE C 349 ? THR C 638 PHE C 640 5 ? 3 HELX_P HELX_P28 AD1 SER C 359 ? ALA C 370 ? SER C 650 ALA C 661 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? A CYS 85 SG ? ? ? 1_555 D A1AIV . C03 ? ? A CYS 85 B A1AIV 101 1_555 ? ? ? ? ? ? ? 1.779 ? ? covale2 covale one ? B GLY 79 C ? ? ? 1_555 D A1AIV . N01 ? ? B GLY 75 B A1AIV 101 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale3 covale none ? D A1AIV . C03 ? ? ? 1_555 C CYS 348 SG ? ? B A1AIV 101 C CYS 639 1_555 ? ? ? ? ? ? ? 1.794 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id TYR _struct_mon_prot_cis.label_seq_id 60 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id TYR _struct_mon_prot_cis.auth_seq_id 60 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 61 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 61 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 2.04 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 5 ? AA3 ? 2 ? AA4 ? 2 ? AA5 ? 2 ? AA6 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA3 1 2 ? parallel AA4 1 2 ? anti-parallel AA5 1 2 ? anti-parallel AA6 1 2 ? parallel AA6 2 3 ? parallel AA6 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 SER A 22 ? PRO A 25 ? SER A 22 PRO A 25 AA1 2 HIS A 32 ? MET A 38 ? HIS A 32 MET A 38 AA1 3 VAL A 49 ? HIS A 55 ? VAL A 49 HIS A 55 AA1 4 LYS A 66 ? PHE A 69 ? LYS A 66 PHE A 69 AA2 1 THR B 16 ? GLU B 20 ? THR B 12 GLU B 16 AA2 2 GLN B 6 ? LYS B 10 ? GLN B 2 LYS B 6 AA2 3 THR B 70 ? LEU B 73 ? THR B 66 LEU B 69 AA2 4 LEU B 47 ? PHE B 49 ? LEU B 43 PHE B 45 AA2 5 LYS B 52 ? GLN B 53 ? LYS B 48 GLN B 49 AA3 1 GLN C 25 ? VAL C 30 ? GLN C 316 VAL C 321 AA3 2 LYS C 54 ? PHE C 59 ? LYS C 345 PHE C 350 AA4 1 PHE C 90 ? TYR C 92 ? PHE C 381 TYR C 383 AA4 2 LEU C 100 ? ILE C 102 ? LEU C 391 ILE C 393 AA5 1 VAL C 184 ? ARG C 188 ? VAL C 475 ARG C 479 AA5 2 GLU C 191 ? VAL C 195 ? GLU C 482 VAL C 486 AA6 1 THR C 274 ? ARG C 277 ? THR C 565 ARG C 568 AA6 2 PHE C 331 ? GLU C 334 ? PHE C 622 GLU C 625 AA6 3 ARG C 351 ? ASP C 353 ? ARG C 642 ASP C 644 AA6 4 LYS C 344 ? HIS C 346 ? LYS C 635 HIS C 637 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N GLY A 24 ? N GLY A 24 O GLN A 34 ? O GLN A 34 AA1 2 3 N TRP A 33 ? N TRP A 33 O ILE A 54 ? O ILE A 54 AA1 3 4 N SER A 53 ? N SER A 53 O ASN A 68 ? O ASN A 68 AA2 1 2 O LEU B 19 ? O LEU B 15 N ILE B 7 ? N ILE B 3 AA2 2 3 N LYS B 10 ? N LYS B 6 O LEU B 73 ? O LEU B 69 AA2 3 4 O HIS B 72 ? O HIS B 68 N ILE B 48 ? N ILE B 44 AA2 4 5 N PHE B 49 ? N PHE B 45 O LYS B 52 ? O LYS B 48 AA3 1 2 N LEU C 28 ? N LEU C 319 O LEU C 56 ? O LEU C 347 AA4 1 2 N GLU C 91 ? N GLU C 382 O GLN C 101 ? O GLN C 392 AA5 1 2 N GLU C 186 ? N GLU C 477 O VAL C 193 ? O VAL C 484 AA6 1 2 N ARG C 277 ? N ARG C 568 O ILE C 333 ? O ILE C 624 AA6 2 3 N GLU C 334 ? N GLU C 625 O LEU C 352 ? O LEU C 643 AA6 3 4 O ARG C 351 ? O ARG C 642 N HIS C 346 ? N HIS C 637 # _pdbx_entry_details.entry_id 9B56 _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_protein_modification ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 19 ? ? 72.61 -6.38 2 1 ARG A 90 ? ? -131.69 -33.15 3 1 LEU A 110 ? ? -66.52 2.22 4 1 PRO A 118 ? ? -69.37 76.11 5 1 SER C 335 ? ? -68.03 1.68 6 1 VAL C 515 ? ? -123.15 -64.56 7 1 GLU C 586 ? ? -95.83 56.69 8 1 ASP C 612 ? ? -96.57 59.12 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9B56 _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space REAL _em_3d_fitting.ref_protocol 'FLEXIBLE FIT' # _em_3d_reconstruction.entry_id 9B56 _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.35 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 115970 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details '20 mM Tris-HCl, 100 mM NaCl, 0.1% CHAPSO' _em_buffer.pH 7.2 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'Covalent E2-Ub-E3 HECT transthiolation intermediate mimic complex' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1,3 # _em_imaging.entry_id 9B56 _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 800 _em_imaging.nominal_defocus_max 2500 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure 'COMA FREE' _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen NITROGEN # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material GOLD _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'UltrAuFoil R1.2/1.3' _em_sample_support.details ? _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 9B56 _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 100 _em_vitrification.temp ? _em_vitrification.chamber_temperature 295 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9B56 _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 148 ? A GLY 148 2 1 Y 1 A GLY 149 ? A GLY 149 3 1 Y 1 A LEU 150 ? A LEU 150 4 1 Y 1 A VAL 151 ? A VAL 151 5 1 Y 1 A PRO 152 ? A PRO 152 6 1 Y 1 A ARG 153 ? A ARG 153 7 1 Y 1 B GLY -3 ? B GLY 1 8 1 Y 1 B SER -2 ? B SER 2 9 1 Y 1 B GLY -1 ? B GLY 3 10 1 Y 1 B GLY 0 ? B GLY 4 11 1 Y 1 C GLY 669 ? C GLY 378 12 1 Y 1 C THR 670 ? C THR 379 13 1 Y 1 C GLU 671 ? C GLU 380 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A1AIV N01 N N N 1 A1AIV C02 C N N 2 A1AIV C03 C N N 3 A1AIV C04 C N N 4 A1AIV C05 C N N 5 A1AIV N06 N N N 6 A1AIV H1 H N N 7 A1AIV H2 H N N 8 A1AIV H4 H N N 9 A1AIV H5 H N N 10 A1AIV H6 H N N 11 A1AIV H7 H N N 12 A1AIV H8 H N N 13 A1AIV H9 H N N 14 ALA N N N N 15 ALA CA C N S 16 ALA C C N N 17 ALA O O N N 18 ALA CB C N N 19 ALA OXT O N N 20 ALA H H N N 21 ALA H2 H N N 22 ALA HA H N N 23 ALA HB1 H N N 24 ALA HB2 H N N 25 ALA HB3 H N N 26 ALA HXT H N N 27 ARG N N N N 28 ARG CA C N S 29 ARG C C N N 30 ARG O O N N 31 ARG CB C N N 32 ARG CG C N N 33 ARG CD C N N 34 ARG NE N N N 35 ARG CZ C N N 36 ARG NH1 N N N 37 ARG NH2 N N N 38 ARG OXT O N N 39 ARG H H N N 40 ARG H2 H N N 41 ARG HA H N N 42 ARG HB2 H N N 43 ARG HB3 H N N 44 ARG HG2 H N N 45 ARG HG3 H N N 46 ARG HD2 H N N 47 ARG HD3 H N N 48 ARG HE H N N 49 ARG HH11 H N N 50 ARG HH12 H N N 51 ARG HH21 H N N 52 ARG HH22 H N N 53 ARG HXT H N N 54 ASN N N N N 55 ASN CA C N S 56 ASN C C N N 57 ASN O O N N 58 ASN CB C N N 59 ASN CG C N N 60 ASN OD1 O N N 61 ASN ND2 N N N 62 ASN OXT O N N 63 ASN H H N N 64 ASN H2 H N N 65 ASN HA H N N 66 ASN HB2 H N N 67 ASN HB3 H N N 68 ASN HD21 H N N 69 ASN HD22 H N N 70 ASN HXT H N N 71 ASP N N N N 72 ASP CA C N S 73 ASP C C N N 74 ASP O O N N 75 ASP CB C N N 76 ASP CG C N N 77 ASP OD1 O N N 78 ASP OD2 O N N 79 ASP OXT O N N 80 ASP H H N N 81 ASP H2 H N N 82 ASP HA H N N 83 ASP HB2 H N N 84 ASP HB3 H N N 85 ASP HD2 H N N 86 ASP HXT H N N 87 CYS N N N N 88 CYS CA C N R 89 CYS C C N N 90 CYS O O N N 91 CYS CB C N N 92 CYS SG S N N 93 CYS OXT O N N 94 CYS H H N N 95 CYS H2 H N N 96 CYS HA H N N 97 CYS HB2 H N N 98 CYS HB3 H N N 99 CYS HG H N N 100 CYS HXT H N N 101 GLN N N N N 102 GLN CA C N S 103 GLN C C N N 104 GLN O O N N 105 GLN CB C N N 106 GLN CG C N N 107 GLN CD C N N 108 GLN OE1 O N N 109 GLN NE2 N N N 110 GLN OXT O N N 111 GLN H H N N 112 GLN H2 H N N 113 GLN HA H N N 114 GLN HB2 H N N 115 GLN HB3 H N N 116 GLN HG2 H N N 117 GLN HG3 H N N 118 GLN HE21 H N N 119 GLN HE22 H N N 120 GLN HXT H N N 121 GLU N N N N 122 GLU CA C N S 123 GLU C C N N 124 GLU O O N N 125 GLU CB C N N 126 GLU CG C N N 127 GLU CD C N N 128 GLU OE1 O N N 129 GLU OE2 O N N 130 GLU OXT O N N 131 GLU H H N N 132 GLU H2 H N N 133 GLU HA H N N 134 GLU HB2 H N N 135 GLU HB3 H N N 136 GLU HG2 H N N 137 GLU HG3 H N N 138 GLU HE2 H N N 139 GLU HXT H N N 140 GLY N N N N 141 GLY CA C N N 142 GLY C C N N 143 GLY O O N N 144 GLY OXT O N N 145 GLY H H N N 146 GLY H2 H N N 147 GLY HA2 H N N 148 GLY HA3 H N N 149 GLY HXT H N N 150 HIS N N N N 151 HIS CA C N S 152 HIS C C N N 153 HIS O O N N 154 HIS CB C N N 155 HIS CG C Y N 156 HIS ND1 N Y N 157 HIS CD2 C Y N 158 HIS CE1 C Y N 159 HIS NE2 N Y N 160 HIS OXT O N N 161 HIS H H N N 162 HIS H2 H N N 163 HIS HA H N N 164 HIS HB2 H N N 165 HIS HB3 H N N 166 HIS HD1 H N N 167 HIS HD2 H N N 168 HIS HE1 H N N 169 HIS HE2 H N N 170 HIS HXT H N N 171 ILE N N N N 172 ILE CA C N S 173 ILE C C N N 174 ILE O O N N 175 ILE CB C N S 176 ILE CG1 C N N 177 ILE CG2 C N N 178 ILE CD1 C N N 179 ILE OXT O N N 180 ILE H H N N 181 ILE H2 H N N 182 ILE HA H N N 183 ILE HB H N N 184 ILE HG12 H N N 185 ILE HG13 H N N 186 ILE HG21 H N N 187 ILE HG22 H N N 188 ILE HG23 H N N 189 ILE HD11 H N N 190 ILE HD12 H N N 191 ILE HD13 H N N 192 ILE HXT H N N 193 LEU N N N N 194 LEU CA C N S 195 LEU C C N N 196 LEU O O N N 197 LEU CB C N N 198 LEU CG C N N 199 LEU CD1 C N N 200 LEU CD2 C N N 201 LEU OXT O N N 202 LEU H H N N 203 LEU H2 H N N 204 LEU HA H N N 205 LEU HB2 H N N 206 LEU HB3 H N N 207 LEU HG H N N 208 LEU HD11 H N N 209 LEU HD12 H N N 210 LEU HD13 H N N 211 LEU HD21 H N N 212 LEU HD22 H N N 213 LEU HD23 H N N 214 LEU HXT H N N 215 LYS N N N N 216 LYS CA C N S 217 LYS C C N N 218 LYS O O N N 219 LYS CB C N N 220 LYS CG C N N 221 LYS CD C N N 222 LYS CE C N N 223 LYS NZ N N N 224 LYS OXT O N N 225 LYS H H N N 226 LYS H2 H N N 227 LYS HA H N N 228 LYS HB2 H N N 229 LYS HB3 H N N 230 LYS HG2 H N N 231 LYS HG3 H N N 232 LYS HD2 H N N 233 LYS HD3 H N N 234 LYS HE2 H N N 235 LYS HE3 H N N 236 LYS HZ1 H N N 237 LYS HZ2 H N N 238 LYS HZ3 H N N 239 LYS HXT H N N 240 MET N N N N 241 MET CA C N S 242 MET C C N N 243 MET O O N N 244 MET CB C N N 245 MET CG C N N 246 MET SD S N N 247 MET CE C N N 248 MET OXT O N N 249 MET H H N N 250 MET H2 H N N 251 MET HA H N N 252 MET HB2 H N N 253 MET HB3 H N N 254 MET HG2 H N N 255 MET HG3 H N N 256 MET HE1 H N N 257 MET HE2 H N N 258 MET HE3 H N N 259 MET HXT H N N 260 PHE N N N N 261 PHE CA C N S 262 PHE C C N N 263 PHE O O N N 264 PHE CB C N N 265 PHE CG C Y N 266 PHE CD1 C Y N 267 PHE CD2 C Y N 268 PHE CE1 C Y N 269 PHE CE2 C Y N 270 PHE CZ C Y N 271 PHE OXT O N N 272 PHE H H N N 273 PHE H2 H N N 274 PHE HA H N N 275 PHE HB2 H N N 276 PHE HB3 H N N 277 PHE HD1 H N N 278 PHE HD2 H N N 279 PHE HE1 H N N 280 PHE HE2 H N N 281 PHE HZ H N N 282 PHE HXT H N N 283 PRO N N N N 284 PRO CA C N S 285 PRO C C N N 286 PRO O O N N 287 PRO CB C N N 288 PRO CG C N N 289 PRO CD C N N 290 PRO OXT O N N 291 PRO H H N N 292 PRO HA H N N 293 PRO HB2 H N N 294 PRO HB3 H N N 295 PRO HG2 H N N 296 PRO HG3 H N N 297 PRO HD2 H N N 298 PRO HD3 H N N 299 PRO HXT H N N 300 SER N N N N 301 SER CA C N S 302 SER C C N N 303 SER O O N N 304 SER CB C N N 305 SER OG O N N 306 SER OXT O N N 307 SER H H N N 308 SER H2 H N N 309 SER HA H N N 310 SER HB2 H N N 311 SER HB3 H N N 312 SER HG H N N 313 SER HXT H N N 314 THR N N N N 315 THR CA C N S 316 THR C C N N 317 THR O O N N 318 THR CB C N R 319 THR OG1 O N N 320 THR CG2 C N N 321 THR OXT O N N 322 THR H H N N 323 THR H2 H N N 324 THR HA H N N 325 THR HB H N N 326 THR HG1 H N N 327 THR HG21 H N N 328 THR HG22 H N N 329 THR HG23 H N N 330 THR HXT H N N 331 TRP N N N N 332 TRP CA C N S 333 TRP C C N N 334 TRP O O N N 335 TRP CB C N N 336 TRP CG C Y N 337 TRP CD1 C Y N 338 TRP CD2 C Y N 339 TRP NE1 N Y N 340 TRP CE2 C Y N 341 TRP CE3 C Y N 342 TRP CZ2 C Y N 343 TRP CZ3 C Y N 344 TRP CH2 C Y N 345 TRP OXT O N N 346 TRP H H N N 347 TRP H2 H N N 348 TRP HA H N N 349 TRP HB2 H N N 350 TRP HB3 H N N 351 TRP HD1 H N N 352 TRP HE1 H N N 353 TRP HE3 H N N 354 TRP HZ2 H N N 355 TRP HZ3 H N N 356 TRP HH2 H N N 357 TRP HXT H N N 358 TYR N N N N 359 TYR CA C N S 360 TYR C C N N 361 TYR O O N N 362 TYR CB C N N 363 TYR CG C Y N 364 TYR CD1 C Y N 365 TYR CD2 C Y N 366 TYR CE1 C Y N 367 TYR CE2 C Y N 368 TYR CZ C Y N 369 TYR OH O N N 370 TYR OXT O N N 371 TYR H H N N 372 TYR H2 H N N 373 TYR HA H N N 374 TYR HB2 H N N 375 TYR HB3 H N N 376 TYR HD1 H N N 377 TYR HD2 H N N 378 TYR HE1 H N N 379 TYR HE2 H N N 380 TYR HH H N N 381 TYR HXT H N N 382 VAL N N N N 383 VAL CA C N S 384 VAL C C N N 385 VAL O O N N 386 VAL CB C N N 387 VAL CG1 C N N 388 VAL CG2 C N N 389 VAL OXT O N N 390 VAL H H N N 391 VAL H2 H N N 392 VAL HA H N N 393 VAL HB H N N 394 VAL HG11 H N N 395 VAL HG12 H N N 396 VAL HG13 H N N 397 VAL HG21 H N N 398 VAL HG22 H N N 399 VAL HG23 H N N 400 VAL HXT H N N 401 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AIV N06 C05 trip N N 1 A1AIV C05 C04 sing N N 2 A1AIV C03 C04 sing N N 3 A1AIV C03 C02 sing N N 4 A1AIV C02 N01 sing N N 5 A1AIV N01 H1 sing N N 6 A1AIV N01 H2 sing N N 7 A1AIV C02 H4 sing N N 8 A1AIV C02 H5 sing N N 9 A1AIV C03 H6 sing N N 10 A1AIV C03 H7 sing N N 11 A1AIV C04 H8 sing N N 12 A1AIV C04 H9 sing N N 13 ALA N CA sing N N 14 ALA N H sing N N 15 ALA N H2 sing N N 16 ALA CA C sing N N 17 ALA CA CB sing N N 18 ALA CA HA sing N N 19 ALA C O doub N N 20 ALA C OXT sing N N 21 ALA CB HB1 sing N N 22 ALA CB HB2 sing N N 23 ALA CB HB3 sing N N 24 ALA OXT HXT sing N N 25 ARG N CA sing N N 26 ARG N H sing N N 27 ARG N H2 sing N N 28 ARG CA C sing N N 29 ARG CA CB sing N N 30 ARG CA HA sing N N 31 ARG C O doub N N 32 ARG C OXT sing N N 33 ARG CB CG sing N N 34 ARG CB HB2 sing N N 35 ARG CB HB3 sing N N 36 ARG CG CD sing N N 37 ARG CG HG2 sing N N 38 ARG CG HG3 sing N N 39 ARG CD NE sing N N 40 ARG CD HD2 sing N N 41 ARG CD HD3 sing N N 42 ARG NE CZ sing N N 43 ARG NE HE sing N N 44 ARG CZ NH1 sing N N 45 ARG CZ NH2 doub N N 46 ARG NH1 HH11 sing N N 47 ARG NH1 HH12 sing N N 48 ARG NH2 HH21 sing N N 49 ARG NH2 HH22 sing N N 50 ARG OXT HXT sing N N 51 ASN N CA sing N N 52 ASN N H sing N N 53 ASN N H2 sing N N 54 ASN CA C sing N N 55 ASN CA CB sing N N 56 ASN CA HA sing N N 57 ASN C O doub N N 58 ASN C OXT sing N N 59 ASN CB CG sing N N 60 ASN CB HB2 sing N N 61 ASN CB HB3 sing N N 62 ASN CG OD1 doub N N 63 ASN CG ND2 sing N N 64 ASN ND2 HD21 sing N N 65 ASN ND2 HD22 sing N N 66 ASN OXT HXT sing N N 67 ASP N CA sing N N 68 ASP N H sing N N 69 ASP N H2 sing N N 70 ASP CA C sing N N 71 ASP CA CB sing N N 72 ASP CA HA sing N N 73 ASP C O doub N N 74 ASP C OXT sing N N 75 ASP CB CG sing N N 76 ASP CB HB2 sing N N 77 ASP CB HB3 sing N N 78 ASP CG OD1 doub N N 79 ASP CG OD2 sing N N 80 ASP OD2 HD2 sing N N 81 ASP OXT HXT sing N N 82 CYS N CA sing N N 83 CYS N H sing N N 84 CYS N H2 sing N N 85 CYS CA C sing N N 86 CYS CA CB sing N N 87 CYS CA HA sing N N 88 CYS C O doub N N 89 CYS C OXT sing N N 90 CYS CB SG sing N N 91 CYS CB HB2 sing N N 92 CYS CB HB3 sing N N 93 CYS SG HG sing N N 94 CYS OXT HXT sing N N 95 GLN N CA sing N N 96 GLN N H sing N N 97 GLN N H2 sing N N 98 GLN CA C sing N N 99 GLN CA CB sing N N 100 GLN CA HA sing N N 101 GLN C O doub N N 102 GLN C OXT sing N N 103 GLN CB CG sing N N 104 GLN CB HB2 sing N N 105 GLN CB HB3 sing N N 106 GLN CG CD sing N N 107 GLN CG HG2 sing N N 108 GLN CG HG3 sing N N 109 GLN CD OE1 doub N N 110 GLN CD NE2 sing N N 111 GLN NE2 HE21 sing N N 112 GLN NE2 HE22 sing N N 113 GLN OXT HXT sing N N 114 GLU N CA sing N N 115 GLU N H sing N N 116 GLU N H2 sing N N 117 GLU CA C sing N N 118 GLU CA CB sing N N 119 GLU CA HA sing N N 120 GLU C O doub N N 121 GLU C OXT sing N N 122 GLU CB CG sing N N 123 GLU CB HB2 sing N N 124 GLU CB HB3 sing N N 125 GLU CG CD sing N N 126 GLU CG HG2 sing N N 127 GLU CG HG3 sing N N 128 GLU CD OE1 doub N N 129 GLU CD OE2 sing N N 130 GLU OE2 HE2 sing N N 131 GLU OXT HXT sing N N 132 GLY N CA sing N N 133 GLY N H sing N N 134 GLY N H2 sing N N 135 GLY CA C sing N N 136 GLY CA HA2 sing N N 137 GLY CA HA3 sing N N 138 GLY C O doub N N 139 GLY C OXT sing N N 140 GLY OXT HXT sing N N 141 HIS N CA sing N N 142 HIS N H sing N N 143 HIS N H2 sing N N 144 HIS CA C sing N N 145 HIS CA CB sing N N 146 HIS CA HA sing N N 147 HIS C O doub N N 148 HIS C OXT sing N N 149 HIS CB CG sing N N 150 HIS CB HB2 sing N N 151 HIS CB HB3 sing N N 152 HIS CG ND1 sing Y N 153 HIS CG CD2 doub Y N 154 HIS ND1 CE1 doub Y N 155 HIS ND1 HD1 sing N N 156 HIS CD2 NE2 sing Y N 157 HIS CD2 HD2 sing N N 158 HIS CE1 NE2 sing Y N 159 HIS CE1 HE1 sing N N 160 HIS NE2 HE2 sing N N 161 HIS OXT HXT sing N N 162 ILE N CA sing N N 163 ILE N H sing N N 164 ILE N H2 sing N N 165 ILE CA C sing N N 166 ILE CA CB sing N N 167 ILE CA HA sing N N 168 ILE C O doub N N 169 ILE C OXT sing N N 170 ILE CB CG1 sing N N 171 ILE CB CG2 sing N N 172 ILE CB HB sing N N 173 ILE CG1 CD1 sing N N 174 ILE CG1 HG12 sing N N 175 ILE CG1 HG13 sing N N 176 ILE CG2 HG21 sing N N 177 ILE CG2 HG22 sing N N 178 ILE CG2 HG23 sing N N 179 ILE CD1 HD11 sing N N 180 ILE CD1 HD12 sing N N 181 ILE CD1 HD13 sing N N 182 ILE OXT HXT sing N N 183 LEU N CA sing N N 184 LEU N H sing N N 185 LEU N H2 sing N N 186 LEU CA C sing N N 187 LEU CA CB sing N N 188 LEU CA HA sing N N 189 LEU C O doub N N 190 LEU C OXT sing N N 191 LEU CB CG sing N N 192 LEU CB HB2 sing N N 193 LEU CB HB3 sing N N 194 LEU CG CD1 sing N N 195 LEU CG CD2 sing N N 196 LEU CG HG sing N N 197 LEU CD1 HD11 sing N N 198 LEU CD1 HD12 sing N N 199 LEU CD1 HD13 sing N N 200 LEU CD2 HD21 sing N N 201 LEU CD2 HD22 sing N N 202 LEU CD2 HD23 sing N N 203 LEU OXT HXT sing N N 204 LYS N CA sing N N 205 LYS N H sing N N 206 LYS N H2 sing N N 207 LYS CA C sing N N 208 LYS CA CB sing N N 209 LYS CA HA sing N N 210 LYS C O doub N N 211 LYS C OXT sing N N 212 LYS CB CG sing N N 213 LYS CB HB2 sing N N 214 LYS CB HB3 sing N N 215 LYS CG CD sing N N 216 LYS CG HG2 sing N N 217 LYS CG HG3 sing N N 218 LYS CD CE sing N N 219 LYS CD HD2 sing N N 220 LYS CD HD3 sing N N 221 LYS CE NZ sing N N 222 LYS CE HE2 sing N N 223 LYS CE HE3 sing N N 224 LYS NZ HZ1 sing N N 225 LYS NZ HZ2 sing N N 226 LYS NZ HZ3 sing N N 227 LYS OXT HXT sing N N 228 MET N CA sing N N 229 MET N H sing N N 230 MET N H2 sing N N 231 MET CA C sing N N 232 MET CA CB sing N N 233 MET CA HA sing N N 234 MET C O doub N N 235 MET C OXT sing N N 236 MET CB CG sing N N 237 MET CB HB2 sing N N 238 MET CB HB3 sing N N 239 MET CG SD sing N N 240 MET CG HG2 sing N N 241 MET CG HG3 sing N N 242 MET SD CE sing N N 243 MET CE HE1 sing N N 244 MET CE HE2 sing N N 245 MET CE HE3 sing N N 246 MET OXT HXT sing N N 247 PHE N CA sing N N 248 PHE N H sing N N 249 PHE N H2 sing N N 250 PHE CA C sing N N 251 PHE CA CB sing N N 252 PHE CA HA sing N N 253 PHE C O doub N N 254 PHE C OXT sing N N 255 PHE CB CG sing N N 256 PHE CB HB2 sing N N 257 PHE CB HB3 sing N N 258 PHE CG CD1 doub Y N 259 PHE CG CD2 sing Y N 260 PHE CD1 CE1 sing Y N 261 PHE CD1 HD1 sing N N 262 PHE CD2 CE2 doub Y N 263 PHE CD2 HD2 sing N N 264 PHE CE1 CZ doub Y N 265 PHE CE1 HE1 sing N N 266 PHE CE2 CZ sing Y N 267 PHE CE2 HE2 sing N N 268 PHE CZ HZ sing N N 269 PHE OXT HXT sing N N 270 PRO N CA sing N N 271 PRO N CD sing N N 272 PRO N H sing N N 273 PRO CA C sing N N 274 PRO CA CB sing N N 275 PRO CA HA sing N N 276 PRO C O doub N N 277 PRO C OXT sing N N 278 PRO CB CG sing N N 279 PRO CB HB2 sing N N 280 PRO CB HB3 sing N N 281 PRO CG CD sing N N 282 PRO CG HG2 sing N N 283 PRO CG HG3 sing N N 284 PRO CD HD2 sing N N 285 PRO CD HD3 sing N N 286 PRO OXT HXT sing N N 287 SER N CA sing N N 288 SER N H sing N N 289 SER N H2 sing N N 290 SER CA C sing N N 291 SER CA CB sing N N 292 SER CA HA sing N N 293 SER C O doub N N 294 SER C OXT sing N N 295 SER CB OG sing N N 296 SER CB HB2 sing N N 297 SER CB HB3 sing N N 298 SER OG HG sing N N 299 SER OXT HXT sing N N 300 THR N CA sing N N 301 THR N H sing N N 302 THR N H2 sing N N 303 THR CA C sing N N 304 THR CA CB sing N N 305 THR CA HA sing N N 306 THR C O doub N N 307 THR C OXT sing N N 308 THR CB OG1 sing N N 309 THR CB CG2 sing N N 310 THR CB HB sing N N 311 THR OG1 HG1 sing N N 312 THR CG2 HG21 sing N N 313 THR CG2 HG22 sing N N 314 THR CG2 HG23 sing N N 315 THR OXT HXT sing N N 316 TRP N CA sing N N 317 TRP N H sing N N 318 TRP N H2 sing N N 319 TRP CA C sing N N 320 TRP CA CB sing N N 321 TRP CA HA sing N N 322 TRP C O doub N N 323 TRP C OXT sing N N 324 TRP CB CG sing N N 325 TRP CB HB2 sing N N 326 TRP CB HB3 sing N N 327 TRP CG CD1 doub Y N 328 TRP CG CD2 sing Y N 329 TRP CD1 NE1 sing Y N 330 TRP CD1 HD1 sing N N 331 TRP CD2 CE2 doub Y N 332 TRP CD2 CE3 sing Y N 333 TRP NE1 CE2 sing Y N 334 TRP NE1 HE1 sing N N 335 TRP CE2 CZ2 sing Y N 336 TRP CE3 CZ3 doub Y N 337 TRP CE3 HE3 sing N N 338 TRP CZ2 CH2 doub Y N 339 TRP CZ2 HZ2 sing N N 340 TRP CZ3 CH2 sing Y N 341 TRP CZ3 HZ3 sing N N 342 TRP CH2 HH2 sing N N 343 TRP OXT HXT sing N N 344 TYR N CA sing N N 345 TYR N H sing N N 346 TYR N H2 sing N N 347 TYR CA C sing N N 348 TYR CA CB sing N N 349 TYR CA HA sing N N 350 TYR C O doub N N 351 TYR C OXT sing N N 352 TYR CB CG sing N N 353 TYR CB HB2 sing N N 354 TYR CB HB3 sing N N 355 TYR CG CD1 doub Y N 356 TYR CG CD2 sing Y N 357 TYR CD1 CE1 sing Y N 358 TYR CD1 HD1 sing N N 359 TYR CD2 CE2 doub Y N 360 TYR CD2 HD2 sing N N 361 TYR CE1 CZ doub Y N 362 TYR CE1 HE1 sing N N 363 TYR CE2 CZ sing Y N 364 TYR CE2 HE2 sing N N 365 TYR CZ OH sing N N 366 TYR OH HH sing N N 367 TYR OXT HXT sing N N 368 VAL N CA sing N N 369 VAL N H sing N N 370 VAL N H2 sing N N 371 VAL CA C sing N N 372 VAL CA CB sing N N 373 VAL CA HA sing N N 374 VAL C O doub N N 375 VAL C OXT sing N N 376 VAL CB CG1 sing N N 377 VAL CB CG2 sing N N 378 VAL CB HB sing N N 379 VAL CG1 HG11 sing N N 380 VAL CG1 HG12 sing N N 381 VAL CG1 HG13 sing N N 382 VAL CG2 HG21 sing N N 383 VAL CG2 HG22 sing N N 384 VAL CG2 HG23 sing N N 385 VAL OXT HXT sing N N 386 # _em_admin.current_status REL _em_admin.deposition_date 2024-03-22 _em_admin.deposition_site RCSB _em_admin.entry_id 9B56 _em_admin.last_update 2024-09-18 _em_admin.map_release_date 2024-06-05 _em_admin.title 'Ubiquitin E2-Ub-E3 HECT tetrahedral transthiolation intermediate mimic - state 2' # loop_ _em_buffer_component.buffer_id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.id _em_buffer_component.name 1 20 mM C4H12NO3 1 'Tris HCl buffer' 1 100 mM NaCl 2 'Sodium chloride' 1 1 mg/ml C32H59N2O8S 3 CHAPSO # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 284812 _em_entity_assembly_naturalsource.organism 'Schizosaccharomyces pombe 972h-' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain '972 / ATCC 24843' _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 469008 _em_entity_assembly_recombinant.organism 'Escherichia coli BL21(DE3)' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time 4 _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 72 _em_image_recording.details ? _em_image_recording.detector_mode SUPER-RESOLUTION _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? Topaz ? 'MODEL REFINEMENT' ? 2 ? ? ? PHENIX 1.20.1_4487: 'IMAGE ACQUISITION' ? 3 ? ? ? SerialEM ? MASKING ? 4 ? ? ? cryoSPARC ? 'CTF CORRECTION' ? 5 1 ? ? Gctf ? 'MODEL FITTING' ? 6 ? ? ? PHENIX ? OTHER ? 7 ? ? ? RELION ? 'LAYERLINE INDEXING' ? 8 1 1 1 ? ? 'DIFFRACTION INDEXING' ? 9 1 1 1 ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? cryoSPARC ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? cryoSPARC ? CLASSIFICATION ? 12 1 ? ? cryoSPARC ? RECONSTRUCTION ? 13 1 ? ? cryoSPARC ? # _em_specimen.concentration 4.5 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Howard Hughes Medical Institute (HHMI)' 'United States' ? 1 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' R35GM118080 2 # _atom_sites.entry_id 9B56 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_