HEADER VIRUS LIKE PARTICLE 03-APR-24 9B9Q TITLE CARGO-LOADED MYXOCOCCUS XANTHUS ENCA ENCAPSULIN ENGINEERED PORE MUTANT TITLE 2 WITH T=3 ICOSAHEDRAL SYMMETRY COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYPE 1 ENCAPSULIN SHELL PROTEIN ENCA; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: CARGO-LOADED MYXOCOCCUS XANTHUS ENCA ENCAPSULIN ENGINEERED COMPND 5 PORE MUTANT WITH T=3 ICOSAHEDRAL SYMMETRY; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: ENCAPSULIN NANOCOMPARTMENT CARGO PROTEIN ENCC; COMPND 10 CHAIN: F, G, H; COMPND 11 FRAGMENT: C-TERMINAL TARGETING PEPTIDE (UNP RESIDUES 119-130); COMPND 12 SYNONYM: SNAP-TAG-TARGETING PEPTIDE CARGO PROTEIN; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYXOCOCCUS XANTHUS DK 1622; SOURCE 3 ORGANISM_TAXID: 246197; SOURCE 4 GENE: ENCA, MXAN_3556; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: MYXOCOCCUS XANTHUS DK 1622; SOURCE 9 ORGANISM_TAXID: 246197; SOURCE 10 GENE: ENCC, MXAN_4464; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 12 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS ENCAPSULIN, NANOCOMPARTMENT, PORE MUTANT, VIRUS LIKE PARTICLE EXPDTA ELECTRON MICROSCOPY AUTHOR M.P.ANDREAS,S.KWON,T.W.GIESSEN REVDAT 2 25-SEP-24 9B9Q 1 JRNL REVDAT 1 18-SEP-24 9B9Q 0 JRNL AUTH S.KWON,M.P.ANDREAS,T.W.GIESSEN JRNL TITL PORE ENGINEERING AS A GENERAL STRATEGY TO IMPROVE JRNL TITL 2 PROTEIN-BASED ENZYME NANOREACTOR PERFORMANCE. JRNL REF ACS NANO V. 18 25740 2024 JRNL REFN ESSN 1936-086X JRNL PMID 39226211 JRNL DOI 10.1021/ACSNANO.4C08186 REMARK 2 REMARK 2 RESOLUTION. 3.14 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, LEGINON, CRYOSPARC, UCSF REMARK 3 CHIMERAX, CRYOSPARC, CRYOSPARC, REMARK 3 CRYOSPARC, PHENIX, COOT REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 7S4Q REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : CROSS-CORRELATION COEFFICIENT REMARK 3 OVERALL ANISOTROPIC B VALUE : 93.100 REMARK 3 REMARK 3 FITTING PROCEDURE : CHIMERAX V1.2.5 WAS FIRST USED TO PLACE THE REMARK 3 STARTING MODEL (PDB: 7S4Q) IN THE CRYO-EM MAP BY USING THE FIT REMARK 3 IN MAP COMMAND. THE MODEL WAS THEN MANUALLY REFINED USING COOT V REMARK 3 0.9.8.1, FOLLOWED BY ITERATIVE REAL-SPACE REFINEMENTS IN PHENIX REMARK 3 V1.20.1-4487-000. BIOMT OPERATORS WERE IDENTIFIED FROM THE CRYO- REMARK 3 EM MAP USING MAP_SYMMETRY COMMAND IN PHENIX THEN APPLIED TO THE REMARK 3 MODEL USING THE APPLY_NCS COMMAND TO ASSEMBLE THE COMPLETE REMARK 3 SHELL. REAL-SPACE REFINEMENT WAS REPEATED IN PHENIX WITH NCS REMARK 3 CONSTRAINTS APPLIED. THE BIOMT OPERATORS WERE THEN IDENTIFIED REMARK 3 USING FIND_NCS COMMAND IN PHENIX AND APPLIED TO THE HEADER OF A REMARK 3 PROTOMER OF THE NCS-REFINED MODEL. REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.140 REMARK 3 NUMBER OF PARTICLES : 12967 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: HOMOGENEOUS REFINEMENT WAS PERFORMED AGAINST THE REMARK 3 INTIAL AB-INITIO MAP USING I SYMMETRY, PER-PARTICLE DEFOCUS REMARK 3 OPTIMIZATION, PER-GROUP CTF PARAMTERIZATION, AND EWALD SPHERE REMARK 3 CORRECTION. REMARK 4 REMARK 4 9B9Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-APR-24. REMARK 100 THE DEPOSITION ID IS D_1000282929. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : CARGO-LOADED MYXOCOCCUS XANTHUS REMARK 245 ENCA ENCAPSULIN ENGINEERED PORE REMARK 245 MUTANT WITH T=3 ICOSAHEDRAL REMARK 245 SYMMETRY; MYXOCOCCUS XANTHUS REMARK 245 ENCA ENCAPSULIN ENGINEERED PORE REMARK 245 MUTANT WITH T=3 ICOSAHEDRAL REMARK 245 SYMMETRY; SNAP-TAG-TARGETING REMARK 245 PEPTIDE CARGO PROTEIN REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 4.10 REMARK 245 SAMPLE SUPPORT DETAILS : THE GRID WAS GLOW DISCHARGED AT REMARK 245 5 MA FOR 60 SECONDS UNDER REMARK 245 VACUUM. REMARK 245 SAMPLE VITRIFICATION DETAILS : BLOT FORCE: 20 BLOT TIME: 4 REMARK 245 SECONDS WAIT TIME: 0 SECONDS REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 706 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TECNAI ARCTICA REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1800.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 3918.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 45000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.309017 0.809016 -0.500001 97.32499 REMARK 350 BIOMT2 2 -0.809016 0.500001 0.309017 254.79952 REMARK 350 BIOMT3 2 0.500001 0.309018 0.809016 -157.47522 REMARK 350 BIOMT1 3 -0.809017 0.499999 -0.309018 412.27482 REMARK 350 BIOMT2 3 -0.500000 -0.309015 0.809018 254.79945 REMARK 350 BIOMT3 3 0.309017 0.809018 0.499998 -157.47505 REMARK 350 BIOMT1 4 -0.809017 -0.500000 0.309017 509.59953 REMARK 350 BIOMT2 4 0.499999 -0.309015 0.809018 -0.00011 REMARK 350 BIOMT3 4 -0.309018 0.809018 0.499998 0.00029 REMARK 350 BIOMT1 5 0.309017 -0.809016 0.500001 254.79968 REMARK 350 BIOMT2 5 0.809016 0.500001 0.309018 -157.47483 REMARK 350 BIOMT3 5 -0.500001 0.309017 0.809016 97.32522 REMARK 350 BIOMT1 6 -0.809018 -0.500000 -0.309015 667.07436 REMARK 350 BIOMT2 6 -0.500000 0.309021 0.809016 97.32424 REMARK 350 BIOMT3 6 -0.309015 0.809016 -0.500003 254.80037 REMARK 350 BIOMT1 7 0.000000 -1.000000 0.000003 509.59929 REMARK 350 BIOMT2 7 -0.000003 0.000003 1.000000 0.00028 REMARK 350 BIOMT3 7 -1.000000 0.000000 -0.000003 509.60038 REMARK 350 BIOMT1 8 0.809018 -0.500000 -0.309014 254.79923 REMARK 350 BIOMT2 8 0.499997 0.309017 0.809019 -157.47441 REMARK 350 BIOMT3 8 -0.309019 -0.809017 0.499999 412.27592 REMARK 350 BIOMT1 9 0.500001 0.309017 -0.809016 254.79922 REMARK 350 BIOMT2 9 0.309018 0.809016 0.500001 -157.47516 REMARK 350 BIOMT3 9 0.809016 -0.500002 0.309017 97.32609 REMARK 350 BIOMT1 10 -0.500000 0.309017 -0.809017 509.59926 REMARK 350 BIOMT2 10 -0.309014 0.809018 0.499999 -0.00094 REMARK 350 BIOMT3 10 0.809018 0.499997 -0.309018 0.00085 REMARK 350 BIOMT1 11 -0.500004 -0.309016 0.809015 254.80062 REMARK 350 BIOMT2 11 -0.309016 -0.809017 -0.500000 667.07544 REMARK 350 BIOMT3 11 0.809015 -0.500000 0.309021 97.32491 REMARK 350 BIOMT1 12 0.499998 -0.309019 0.809018 0.00088 REMARK 350 BIOMT2 12 0.309017 -0.809017 -0.500000 509.60094 REMARK 350 BIOMT3 12 0.809019 0.499999 -0.309015 -0.00066 REMARK 350 BIOMT1 13 0.809019 0.499997 0.309017 -157.47501 REMARK 350 BIOMT2 13 0.499999 -0.309019 -0.809017 412.27648 REMARK 350 BIOMT3 13 -0.309014 0.809018 -0.500000 254.79865 REMARK 350 BIOMT1 14 0.000003 1.000000 -0.000003 -0.00071 REMARK 350 BIOMT2 14 0.000000 -0.000003 -1.000000 509.60116 REMARK 350 BIOMT3 14 -1.000000 0.000003 0.000000 509.59887 REMARK 350 BIOMT1 15 -0.809017 0.500003 0.309013 254.79964 REMARK 350 BIOMT2 15 -0.499998 -0.309019 -0.809017 667.07557 REMARK 350 BIOMT3 15 -0.309020 -0.809015 0.500002 412.27474 REMARK 350 BIOMT1 16 0.309021 0.809015 -0.500000 97.32373 REMARK 350 BIOMT2 16 0.809015 -0.500004 -0.309015 254.80176 REMARK 350 BIOMT3 16 -0.500000 -0.309015 -0.809018 667.07476 REMARK 350 BIOMT1 17 -0.809014 0.500003 -0.309020 412.27356 REMARK 350 BIOMT2 17 0.500003 0.309013 -0.809017 254.80070 REMARK 350 BIOMT3 17 -0.309020 -0.809017 -0.499999 667.07555 REMARK 350 BIOMT1 18 -0.809020 -0.499996 0.309016 509.59966 REMARK 350 BIOMT2 18 -0.499996 0.309016 -0.809019 509.59991 REMARK 350 BIOMT3 18 0.309016 -0.809019 -0.499997 509.60052 REMARK 350 BIOMT1 19 0.309013 -0.809017 0.500002 254.80067 REMARK 350 BIOMT2 19 -0.809017 -0.499998 -0.309020 667.07555 REMARK 350 BIOMT3 19 0.500002 -0.309020 -0.809015 412.27481 REMARK 350 BIOMT1 20 1.000000 -0.000004 0.000003 0.00013 REMARK 350 BIOMT2 20 -0.000004 -1.000000 0.000000 509.60163 REMARK 350 BIOMT3 20 0.000003 0.000000 -1.000000 509.59924 REMARK 350 BIOMT1 21 0.000000 1.000000 0.000000 -0.00084 REMARK 350 BIOMT2 21 0.000000 0.000000 1.000000 0.00047 REMARK 350 BIOMT3 21 1.000000 0.000000 0.000000 0.00037 REMARK 350 BIOMT1 22 -0.809016 0.500001 0.309017 254.79864 REMARK 350 BIOMT2 22 0.500001 0.309018 0.809016 -157.47486 REMARK 350 BIOMT3 22 0.309017 0.809016 -0.500001 97.32528 REMARK 350 BIOMT1 23 -0.500000 -0.309014 0.809018 254.79866 REMARK 350 BIOMT2 23 0.309017 0.809018 0.499997 -157.47472 REMARK 350 BIOMT3 23 -0.809017 0.499999 -0.309018 412.27511 REMARK 350 BIOMT1 24 0.499999 -0.309015 0.809019 -0.00082 REMARK 350 BIOMT2 24 -0.309018 0.809018 0.499997 0.00070 REMARK 350 BIOMT3 24 -0.809017 -0.500000 0.309017 509.59990 REMARK 350 BIOMT1 25 0.809016 0.500001 0.309018 -157.47557 REMARK 350 BIOMT2 25 -0.500002 0.309017 0.809016 97.32572 REMARK 350 BIOMT3 25 0.309017 -0.809017 0.500001 254.80010 REMARK 350 BIOMT1 26 -0.500000 0.309021 0.809015 97.32366 REMARK 350 BIOMT2 26 -0.309015 0.809016 -0.500004 254.80073 REMARK 350 BIOMT3 26 -0.809018 -0.500000 -0.309016 667.07474 REMARK 350 BIOMT1 27 -0.000003 0.000003 1.000000 -0.00024 REMARK 350 BIOMT2 27 -1.000000 0.000000 -0.000003 509.60079 REMARK 350 BIOMT3 27 0.000000 -1.000000 0.000003 509.59971 REMARK 350 BIOMT1 28 0.499998 0.309017 0.809019 -157.47503 REMARK 350 BIOMT2 28 -0.309019 -0.809017 0.499999 412.27642 REMARK 350 BIOMT3 28 0.809018 -0.500000 -0.309015 254.79969 REMARK 350 BIOMT1 29 0.309018 0.809016 0.500001 -157.47591 REMARK 350 BIOMT2 29 0.809016 -0.500002 0.309017 97.32659 REMARK 350 BIOMT3 29 0.500001 0.309017 -0.809016 254.79964 REMARK 350 BIOMT1 30 -0.309014 0.809019 0.499999 -0.00165 REMARK 350 BIOMT2 30 0.809018 0.499997 -0.309018 0.00126 REMARK 350 BIOMT3 30 -0.500000 0.309017 -0.809017 509.59963 REMARK 350 BIOMT1 31 -0.309015 -0.809018 -0.500000 667.07469 REMARK 350 BIOMT2 31 0.809015 -0.500000 0.309021 97.32511 REMARK 350 BIOMT3 31 -0.500003 -0.309015 0.809015 254.80083 REMARK 350 BIOMT1 32 0.309017 -0.809017 -0.500000 509.60009 REMARK 350 BIOMT2 32 0.809019 0.499999 -0.309014 -0.00038 REMARK 350 BIOMT3 32 0.499998 -0.309019 0.809018 0.00112 REMARK 350 BIOMT1 33 0.499999 -0.309018 -0.809017 412.27569 REMARK 350 BIOMT2 33 -0.309015 0.809018 -0.500000 254.79899 REMARK 350 BIOMT3 33 0.809019 0.499997 0.309017 -157.47472 REMARK 350 BIOMT1 34 0.000000 -0.000003 -1.000000 509.60051 REMARK 350 BIOMT2 34 -1.000000 0.000003 0.000000 509.59915 REMARK 350 BIOMT3 34 0.000003 1.000000 -0.000003 -0.00042 REMARK 350 BIOMT1 35 -0.499999 -0.309019 -0.809017 667.07495 REMARK 350 BIOMT2 35 -0.309019 -0.809014 0.500003 412.27494 REMARK 350 BIOMT3 35 -0.809017 0.500003 0.309013 254.79989 REMARK 350 BIOMT1 36 0.809015 -0.500004 -0.309016 254.80119 REMARK 350 BIOMT2 36 -0.500000 -0.309015 -0.809017 667.07513 REMARK 350 BIOMT3 36 0.309021 0.809015 -0.500000 97.32411 REMARK 350 BIOMT1 37 0.500002 0.309013 -0.809017 254.80021 REMARK 350 BIOMT2 37 -0.309020 -0.809017 -0.499998 667.07588 REMARK 350 BIOMT3 37 -0.809014 0.500003 -0.309019 412.27394 REMARK 350 BIOMT1 38 -0.499996 0.309016 -0.809020 509.59939 REMARK 350 BIOMT2 38 0.309016 -0.809020 -0.499996 509.60074 REMARK 350 BIOMT3 38 -0.809020 -0.499996 0.309016 509.59996 REMARK 350 BIOMT1 39 -0.809017 -0.499998 -0.309020 667.07493 REMARK 350 BIOMT2 39 0.500003 -0.309019 -0.809015 412.27500 REMARK 350 BIOMT3 39 0.309013 -0.809017 0.500002 254.80092 REMARK 350 BIOMT1 40 -0.000003 -1.000000 0.000000 509.60098 REMARK 350 BIOMT2 40 0.000003 0.000000 -1.000000 509.59952 REMARK 350 BIOMT3 40 1.000000 -0.000003 0.000003 0.00043 REMARK 350 BIOMT1 41 0.000000 0.000000 1.000000 -0.00037 REMARK 350 BIOMT2 41 1.000000 0.000000 0.000000 0.00084 REMARK 350 BIOMT3 41 0.000000 1.000000 0.000000 -0.00047 REMARK 350 BIOMT1 42 0.500001 0.309018 0.809016 -157.47560 REMARK 350 BIOMT2 42 0.309017 0.809016 -0.500002 97.32578 REMARK 350 BIOMT3 42 -0.809016 0.500001 0.309017 254.79906 REMARK 350 BIOMT1 43 0.309017 0.809019 0.499998 -157.47534 REMARK 350 BIOMT2 43 -0.809017 0.499999 -0.309019 412.27561 REMARK 350 BIOMT3 43 -0.500000 -0.309014 0.809018 254.79911 REMARK 350 BIOMT1 44 -0.309019 0.809018 0.499998 0.00005 REMARK 350 BIOMT2 44 -0.809017 -0.500000 0.309017 509.60038 REMARK 350 BIOMT3 44 0.499999 -0.309015 0.809019 -0.00039 REMARK 350 BIOMT1 45 -0.500001 0.309017 0.809016 97.32493 REMARK 350 BIOMT2 45 0.309017 -0.809017 0.500001 254.80056 REMARK 350 BIOMT3 45 0.809016 0.500001 0.309018 -157.47520 REMARK 350 BIOMT1 46 -0.309015 0.809015 -0.500003 254.80016 REMARK 350 BIOMT2 46 -0.809018 -0.500000 -0.309015 667.07510 REMARK 350 BIOMT3 46 -0.500000 0.309021 0.809015 97.32404 REMARK 350 BIOMT1 47 -1.000000 0.000000 -0.000003 509.60014 REMARK 350 BIOMT2 47 0.000000 -1.000000 0.000003 509.60000 REMARK 350 BIOMT3 47 -0.000003 0.000003 1.000000 0.00006 REMARK 350 BIOMT1 48 -0.309019 -0.809017 0.499999 412.27563 REMARK 350 BIOMT2 48 0.809018 -0.500000 -0.309015 254.80003 REMARK 350 BIOMT3 48 0.499998 0.309017 0.809019 -157.47474 REMARK 350 BIOMT1 49 0.809016 -0.500002 0.309017 97.32580 REMARK 350 BIOMT2 49 0.500001 0.309017 -0.809017 254.80010 REMARK 350 BIOMT3 49 0.309018 0.809016 0.500001 -157.47553 REMARK 350 BIOMT1 50 0.809018 0.499997 -0.309019 0.00061 REMARK 350 BIOMT2 50 -0.500000 0.309017 -0.809017 509.60011 REMARK 350 BIOMT3 50 -0.309014 0.809019 0.499999 -0.00122 REMARK 350 BIOMT1 51 0.809015 -0.500000 0.309021 97.32453 REMARK 350 BIOMT2 51 -0.500004 -0.309015 0.809015 254.80119 REMARK 350 BIOMT3 51 -0.309016 -0.809017 -0.500000 667.07507 REMARK 350 BIOMT1 52 0.809019 0.499999 -0.309014 -0.00109 REMARK 350 BIOMT2 52 0.499997 -0.309019 0.809018 0.00153 REMARK 350 BIOMT3 52 0.309017 -0.809017 -0.500000 509.60046 REMARK 350 BIOMT1 53 -0.309014 0.809018 -0.500000 254.79820 REMARK 350 BIOMT2 53 0.809019 0.499997 0.309017 -157.47439 REMARK 350 BIOMT3 53 0.499999 -0.309019 -0.809017 412.27598 REMARK 350 BIOMT1 54 -1.000000 0.000004 0.000000 509.59844 REMARK 350 BIOMT2 54 0.000004 1.000000 -0.000003 -0.00019 REMARK 350 BIOMT3 54 0.000000 -0.000003 -1.000000 509.60075 REMARK 350 BIOMT1 55 -0.309020 -0.809014 0.500002 412.27436 REMARK 350 BIOMT2 55 -0.809017 0.500003 0.309013 254.80012 REMARK 350 BIOMT3 55 -0.499999 -0.309019 -0.809017 667.07525 REMARK 350 BIOMT1 56 -0.500000 -0.309015 -0.809018 667.07439 REMARK 350 BIOMT2 56 0.309021 0.809016 -0.500000 97.32430 REMARK 350 BIOMT3 56 0.809015 -0.500004 -0.309016 254.80141 REMARK 350 BIOMT1 57 -0.309020 -0.809017 -0.499999 667.07526 REMARK 350 BIOMT2 57 -0.809014 0.500003 -0.309019 412.27413 REMARK 350 BIOMT3 57 0.500002 0.309013 -0.809017 254.80046 REMARK 350 BIOMT1 58 0.309016 -0.809020 -0.499997 509.60022 REMARK 350 BIOMT2 58 -0.809020 -0.499996 0.309016 509.60018 REMARK 350 BIOMT3 58 -0.499997 0.309016 -0.809019 509.59969 REMARK 350 BIOMT1 59 0.500002 -0.309020 -0.809014 412.27442 REMARK 350 BIOMT2 59 0.309013 -0.809017 0.500003 254.80116 REMARK 350 BIOMT3 59 -0.809017 -0.499998 -0.309019 667.07522 REMARK 350 BIOMT1 60 0.000003 0.000000 -1.000000 509.59881 REMARK 350 BIOMT2 60 1.000000 -0.000003 0.000003 0.00065 REMARK 350 BIOMT3 60 -0.000003 -1.000000 0.000000 509.60122 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 GLY A 274 REMARK 465 ALA A 275 REMARK 465 GLY A 276 REMARK 465 ALA A 277 REMARK 465 THR A 278 REMARK 465 GLU A 279 REMARK 465 ARG A 280 REMARK 465 ARG A 281 REMARK 465 MET B 1 REMARK 465 GLY B 274 REMARK 465 ALA B 275 REMARK 465 GLY B 276 REMARK 465 ALA B 277 REMARK 465 THR B 278 REMARK 465 GLU B 279 REMARK 465 ARG B 280 REMARK 465 ARG B 281 REMARK 465 MET C 1 REMARK 465 GLY C 274 REMARK 465 ALA C 275 REMARK 465 GLY C 276 REMARK 465 ALA C 277 REMARK 465 THR C 278 REMARK 465 GLU C 279 REMARK 465 ARG C 280 REMARK 465 ARG C 281 REMARK 465 ARG F 203 REMARK 465 PRO H 192 REMARK 465 ARG H 203 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 67 CG1 CG2 REMARK 470 GLU B 9 CG CD OE1 OE2 REMARK 470 GLU B 229 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 60 99.49 -160.56 REMARK 500 HIS A 105 -1.98 84.17 REMARK 500 SER A 207 -0.92 69.44 REMARK 500 ARG A 217 -168.56 -79.64 REMARK 500 ARG A 248 -124.25 53.92 REMARK 500 THR B 156 18.10 58.77 REMARK 500 LEU B 244 53.68 -92.93 REMARK 500 MET B 249 -4.87 72.69 REMARK 500 LEU C 5 35.67 -75.57 REMARK 500 ASP C 54 -61.30 -90.91 REMARK 500 MET C 249 -3.02 66.77 REMARK 500 LEU C 272 51.76 -69.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-44388 RELATED DB: EMDB REMARK 900 CARGO-LOADED MYXOCOCCUS XANTHUS ENCA ENCAPSULIN ENGINEERED PORE REMARK 900 MUTANT WITH T=3 ICOSAHEDRAL SYMMETRY DBREF 9B9Q A 1 281 UNP Q1D6H4 ENCAP_MYXXD 1 287 DBREF 9B9Q B 1 281 UNP Q1D6H4 ENCAP_MYXXD 1 287 DBREF 9B9Q C 1 281 UNP Q1D6H4 ENCAP_MYXXD 1 287 DBREF 9B9Q F 192 203 UNP Q1D3Y8 ENCC_MYXXD 119 130 DBREF 9B9Q G 192 203 UNP Q1D3Y8 ENCC_MYXXD 119 130 DBREF 9B9Q H 192 203 UNP Q1D3Y8 ENCC_MYXXD 119 130 SEQADV 9B9Q GLY A 196 UNP Q1D6H4 ILE 196 ENGINEERED MUTATION SEQADV 9B9Q GLY A 197 UNP Q1D6H4 TYR 197 ENGINEERED MUTATION SEQADV 9B9Q A UNP Q1D6H4 GLU 198 DELETION SEQADV 9B9Q A UNP Q1D6H4 LYS 199 DELETION SEQADV 9B9Q A UNP Q1D6H4 THR 200 DELETION SEQADV 9B9Q A UNP Q1D6H4 GLY 201 DELETION SEQADV 9B9Q A UNP Q1D6H4 VAL 202 DELETION SEQADV 9B9Q A UNP Q1D6H4 LEU 203 DELETION SEQADV 9B9Q GLY B 196 UNP Q1D6H4 ILE 196 ENGINEERED MUTATION SEQADV 9B9Q GLY B 197 UNP Q1D6H4 TYR 197 ENGINEERED MUTATION SEQADV 9B9Q B UNP Q1D6H4 GLU 198 DELETION SEQADV 9B9Q B UNP Q1D6H4 LYS 199 DELETION SEQADV 9B9Q B UNP Q1D6H4 THR 200 DELETION SEQADV 9B9Q B UNP Q1D6H4 GLY 201 DELETION SEQADV 9B9Q B UNP Q1D6H4 VAL 202 DELETION SEQADV 9B9Q B UNP Q1D6H4 LEU 203 DELETION SEQADV 9B9Q GLY C 196 UNP Q1D6H4 ILE 196 ENGINEERED MUTATION SEQADV 9B9Q GLY C 197 UNP Q1D6H4 TYR 197 ENGINEERED MUTATION SEQADV 9B9Q C UNP Q1D6H4 GLU 198 DELETION SEQADV 9B9Q C UNP Q1D6H4 LYS 199 DELETION SEQADV 9B9Q C UNP Q1D6H4 THR 200 DELETION SEQADV 9B9Q C UNP Q1D6H4 GLY 201 DELETION SEQADV 9B9Q C UNP Q1D6H4 VAL 202 DELETION SEQADV 9B9Q C UNP Q1D6H4 LEU 203 DELETION SEQRES 1 A 281 MET PRO ASP PHE LEU GLY HIS ALA GLU ASN PRO LEU ARG SEQRES 2 A 281 GLU GLU GLU TRP ALA ARG LEU ASN GLU THR VAL ILE GLN SEQRES 3 A 281 VAL ALA ARG ARG SER LEU VAL GLY ARG ARG ILE LEU ASP SEQRES 4 A 281 ILE TYR GLY PRO LEU GLY ALA GLY VAL GLN THR VAL PRO SEQRES 5 A 281 TYR ASP GLU PHE GLN GLY VAL SER PRO GLY ALA VAL ASP SEQRES 6 A 281 ILE VAL GLY GLU GLN GLU THR ALA MET VAL PHE THR ASP SEQRES 7 A 281 ALA ARG LYS PHE LYS THR ILE PRO ILE ILE TYR LYS ASP SEQRES 8 A 281 PHE LEU LEU HIS TRP ARG ASP ILE GLU ALA ALA ARG THR SEQRES 9 A 281 HIS ASN MET PRO LEU ASP VAL SER ALA ALA ALA GLY ALA SEQRES 10 A 281 ALA ALA LEU CYS ALA GLN GLN GLU ASP GLU LEU ILE PHE SEQRES 11 A 281 TYR GLY ASP ALA ARG LEU GLY TYR GLU GLY LEU MET THR SEQRES 12 A 281 ALA ASN GLY ARG LEU THR VAL PRO LEU GLY ASP TRP THR SEQRES 13 A 281 SER PRO GLY GLY GLY PHE GLN ALA ILE VAL GLU ALA THR SEQRES 14 A 281 ARG LYS LEU ASN GLU GLN GLY HIS PHE GLY PRO TYR ALA SEQRES 15 A 281 VAL VAL LEU SER PRO ARG LEU TYR SER GLN LEU HIS ARG SEQRES 16 A 281 GLY GLY GLU ILE GLU THR ILE ARG GLN LEU ALA SER ASP SEQRES 17 A 281 GLY VAL TYR GLN SER ASN ARG LEU ARG GLY GLU SER GLY SEQRES 18 A 281 VAL VAL VAL SER THR GLY ARG GLU ASN MET ASP LEU ALA SEQRES 19 A 281 VAL SER MET ASP MET VAL ALA ALA TYR LEU GLY ALA SER SEQRES 20 A 281 ARG MET ASN HIS PRO PHE ARG VAL LEU GLU ALA LEU LEU SEQRES 21 A 281 LEU ARG ILE LYS HIS PRO ASP ALA ILE CYS THR LEU GLU SEQRES 22 A 281 GLY ALA GLY ALA THR GLU ARG ARG SEQRES 1 B 281 MET PRO ASP PHE LEU GLY HIS ALA GLU ASN PRO LEU ARG SEQRES 2 B 281 GLU GLU GLU TRP ALA ARG LEU ASN GLU THR VAL ILE GLN SEQRES 3 B 281 VAL ALA ARG ARG SER LEU VAL GLY ARG ARG ILE LEU ASP SEQRES 4 B 281 ILE TYR GLY PRO LEU GLY ALA GLY VAL GLN THR VAL PRO SEQRES 5 B 281 TYR ASP GLU PHE GLN GLY VAL SER PRO GLY ALA VAL ASP SEQRES 6 B 281 ILE VAL GLY GLU GLN GLU THR ALA MET VAL PHE THR ASP SEQRES 7 B 281 ALA ARG LYS PHE LYS THR ILE PRO ILE ILE TYR LYS ASP SEQRES 8 B 281 PHE LEU LEU HIS TRP ARG ASP ILE GLU ALA ALA ARG THR SEQRES 9 B 281 HIS ASN MET PRO LEU ASP VAL SER ALA ALA ALA GLY ALA SEQRES 10 B 281 ALA ALA LEU CYS ALA GLN GLN GLU ASP GLU LEU ILE PHE SEQRES 11 B 281 TYR GLY ASP ALA ARG LEU GLY TYR GLU GLY LEU MET THR SEQRES 12 B 281 ALA ASN GLY ARG LEU THR VAL PRO LEU GLY ASP TRP THR SEQRES 13 B 281 SER PRO GLY GLY GLY PHE GLN ALA ILE VAL GLU ALA THR SEQRES 14 B 281 ARG LYS LEU ASN GLU GLN GLY HIS PHE GLY PRO TYR ALA SEQRES 15 B 281 VAL VAL LEU SER PRO ARG LEU TYR SER GLN LEU HIS ARG SEQRES 16 B 281 GLY GLY GLU ILE GLU THR ILE ARG GLN LEU ALA SER ASP SEQRES 17 B 281 GLY VAL TYR GLN SER ASN ARG LEU ARG GLY GLU SER GLY SEQRES 18 B 281 VAL VAL VAL SER THR GLY ARG GLU ASN MET ASP LEU ALA SEQRES 19 B 281 VAL SER MET ASP MET VAL ALA ALA TYR LEU GLY ALA SER SEQRES 20 B 281 ARG MET ASN HIS PRO PHE ARG VAL LEU GLU ALA LEU LEU SEQRES 21 B 281 LEU ARG ILE LYS HIS PRO ASP ALA ILE CYS THR LEU GLU SEQRES 22 B 281 GLY ALA GLY ALA THR GLU ARG ARG SEQRES 1 C 281 MET PRO ASP PHE LEU GLY HIS ALA GLU ASN PRO LEU ARG SEQRES 2 C 281 GLU GLU GLU TRP ALA ARG LEU ASN GLU THR VAL ILE GLN SEQRES 3 C 281 VAL ALA ARG ARG SER LEU VAL GLY ARG ARG ILE LEU ASP SEQRES 4 C 281 ILE TYR GLY PRO LEU GLY ALA GLY VAL GLN THR VAL PRO SEQRES 5 C 281 TYR ASP GLU PHE GLN GLY VAL SER PRO GLY ALA VAL ASP SEQRES 6 C 281 ILE VAL GLY GLU GLN GLU THR ALA MET VAL PHE THR ASP SEQRES 7 C 281 ALA ARG LYS PHE LYS THR ILE PRO ILE ILE TYR LYS ASP SEQRES 8 C 281 PHE LEU LEU HIS TRP ARG ASP ILE GLU ALA ALA ARG THR SEQRES 9 C 281 HIS ASN MET PRO LEU ASP VAL SER ALA ALA ALA GLY ALA SEQRES 10 C 281 ALA ALA LEU CYS ALA GLN GLN GLU ASP GLU LEU ILE PHE SEQRES 11 C 281 TYR GLY ASP ALA ARG LEU GLY TYR GLU GLY LEU MET THR SEQRES 12 C 281 ALA ASN GLY ARG LEU THR VAL PRO LEU GLY ASP TRP THR SEQRES 13 C 281 SER PRO GLY GLY GLY PHE GLN ALA ILE VAL GLU ALA THR SEQRES 14 C 281 ARG LYS LEU ASN GLU GLN GLY HIS PHE GLY PRO TYR ALA SEQRES 15 C 281 VAL VAL LEU SER PRO ARG LEU TYR SER GLN LEU HIS ARG SEQRES 16 C 281 GLY GLY GLU ILE GLU THR ILE ARG GLN LEU ALA SER ASP SEQRES 17 C 281 GLY VAL TYR GLN SER ASN ARG LEU ARG GLY GLU SER GLY SEQRES 18 C 281 VAL VAL VAL SER THR GLY ARG GLU ASN MET ASP LEU ALA SEQRES 19 C 281 VAL SER MET ASP MET VAL ALA ALA TYR LEU GLY ALA SER SEQRES 20 C 281 ARG MET ASN HIS PRO PHE ARG VAL LEU GLU ALA LEU LEU SEQRES 21 C 281 LEU ARG ILE LYS HIS PRO ASP ALA ILE CYS THR LEU GLU SEQRES 22 C 281 GLY ALA GLY ALA THR GLU ARG ARG SEQRES 1 F 12 PRO GLU LYS ARG LEU THR VAL GLY SER LEU ARG ARG SEQRES 1 G 12 PRO GLU LYS ARG LEU THR VAL GLY SER LEU ARG ARG SEQRES 1 H 12 PRO GLU LYS ARG LEU THR VAL GLY SER LEU ARG ARG HELIX 1 AA1 ARG A 13 LEU A 32 1 20 HELIX 2 AA2 HIS A 95 THR A 104 1 10 HELIX 3 AA3 VAL A 111 TYR A 131 1 21 HELIX 4 AA4 GLY A 159 GLN A 175 1 17 HELIX 5 AA5 SER A 186 LEU A 193 1 8 HELIX 6 AA6 GLY A 197 ALA A 206 1 10 HELIX 7 AA7 HIS A 265 ASP A 267 5 3 HELIX 8 AA8 ARG B 13 LEU B 32 1 20 HELIX 9 AA9 VAL B 33 ILE B 37 5 5 HELIX 10 AB1 HIS B 95 ASN B 106 1 12 HELIX 11 AB2 VAL B 111 TYR B 131 1 21 HELIX 12 AB3 GLY B 161 GLY B 176 1 16 HELIX 13 AB4 SER B 186 GLY B 196 1 11 HELIX 14 AB5 GLY B 197 SER B 207 1 11 HELIX 15 AB6 HIS B 265 ASP B 267 5 3 HELIX 16 AB7 ARG C 13 LEU C 32 1 20 HELIX 17 AB8 VAL C 33 ILE C 37 5 5 HELIX 18 AB9 HIS C 95 ASN C 106 1 12 HELIX 19 AC1 VAL C 111 TYR C 131 1 21 HELIX 20 AC2 GLY C 159 GLU C 174 1 16 HELIX 21 AC3 SER C 186 LEU C 193 1 8 HELIX 22 AC4 GLY C 197 ALA C 206 1 10 HELIX 23 AC5 ALA C 246 ASN C 250 5 5 HELIX 24 AC6 HIS C 265 ASP C 267 5 3 SHEET 1 AA1 2 THR A 50 VAL A 51 0 SHEET 2 AA1 2 LYS A 83 THR A 84 -1 O LYS A 83 N VAL A 51 SHEET 1 AA2 3 ILE A 88 LEU A 94 0 SHEET 2 AA2 3 HIS A 251 ARG A 262 -1 O PHE A 253 N PHE A 92 SHEET 3 AA2 3 ASP A 232 TYR A 243 -1 N ASP A 232 O ARG A 262 SHEET 1 AA3 4 SER A 207 GLN A 212 0 SHEET 2 AA3 4 TYR A 181 LEU A 185 1 N LEU A 185 O TYR A 211 SHEET 3 AA3 4 GLY A 221 SER A 225 -1 O VAL A 222 N VAL A 184 SHEET 4 AA3 4 ILE A 269 THR A 271 -1 O CYS A 270 N VAL A 223 SHEET 1 AA4 4 ILE B 40 PRO B 43 0 SHEET 2 AA4 4 MET B 231 TYR B 243 1 O LEU B 233 N TYR B 41 SHEET 3 AA4 4 HIS B 251 ILE B 263 -1 O ARG B 262 N ASP B 232 SHEET 4 AA4 4 ILE B 88 LEU B 94 -1 N ILE B 88 O GLU B 257 SHEET 1 AA5 2 THR B 50 VAL B 51 0 SHEET 2 AA5 2 LYS B 83 THR B 84 -1 O LYS B 83 N VAL B 51 SHEET 1 AA6 4 VAL B 210 GLN B 212 0 SHEET 2 AA6 4 TYR B 181 LEU B 185 1 N LEU B 185 O TYR B 211 SHEET 3 AA6 4 GLY B 221 SER B 225 -1 O VAL B 224 N ALA B 182 SHEET 4 AA6 4 ILE B 269 THR B 271 -1 O CYS B 270 N VAL B 223 SHEET 1 AA7 4 GLY C 42 PRO C 43 0 SHEET 2 AA7 4 MET C 231 TYR C 243 1 N VAL C 235 O GLY C 42 SHEET 3 AA7 4 HIS C 251 ILE C 263 -1 O LEU C 256 N VAL C 240 SHEET 4 AA7 4 ILE C 88 LEU C 94 -1 N PHE C 92 O PHE C 253 SHEET 1 AA8 2 THR C 50 TYR C 53 0 SHEET 2 AA8 2 LYS C 81 THR C 84 -1 O LYS C 81 N TYR C 53 SHEET 1 AA9 4 VAL C 210 GLN C 212 0 SHEET 2 AA9 4 TYR C 181 LEU C 185 1 N VAL C 183 O TYR C 211 SHEET 3 AA9 4 GLY C 221 SER C 225 -1 O VAL C 222 N VAL C 184 SHEET 4 AA9 4 ILE C 269 THR C 271 -1 O CYS C 270 N VAL C 223 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 TER 2099 GLU A 273 TER 4199 GLU B 273 TER 6307 GLU C 273 TER 6395 ARG F 202 TER 6494 ARG G 203 TER 6575 ARG H 202 MASTER 377 0 0 24 29 0 0 6 6569 6 0 69 END