data_9BCI # _entry.id 9BCI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.399 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9BCI pdb_00009bci 10.2210/pdb9bci/pdb WWPDB D_1000282265 ? ? BMRB 31165 ? 10.13018/BMR31165 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2024-11-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr . _pdbx_database_status.entry_id 9BCI _pdbx_database_status.recvd_initial_deposition_date 2024-04-09 _pdbx_database_status.SG_entry Y _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs . _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name BMRB _pdbx_database_related.details ;Structure of West Nile Virus 3'- stem-loop_50NTS ; _pdbx_database_related.db_id 31165 _pdbx_database_related.content_type unspecified # _pdbx_contact_author.id 3 _pdbx_contact_author.email varani@uw.edu _pdbx_contact_author.name_first Gabriele _pdbx_contact_author.name_last Varani _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-6642-7144 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Zhu, Y.' 1 0000-0002-4980-9535 'Chaubey, B.' 2 0000-0002-6655-0641 'Seattle Structural Genomics Center for Infectious Disease (SSGCID)' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Mol.Biol. _citation.journal_id_ASTM JMOBAK _citation.journal_id_CSD 0070 _citation.journal_id_ISSN 1089-8638 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 436 _citation.language ? _citation.page_first 168767 _citation.page_last 168767 _citation.title ;Structure of Essential RNA Regulatory Elements in the West Nile Virus 3'-Terminal Stem Loop. ; _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.jmb.2024.168767 _citation.pdbx_database_id_PubMed 39214284 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhu, Y.' 1 ? primary 'Chaubey, B.' 2 ? primary 'Olsen, G.L.' 3 ? primary 'Varani, G.' 4 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'RNA (50-MER)' _entity.formula_weight 16050.560 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'GGAUCUUCUGCUCUGCACAACCUUCGGGUGGUGCGAGA(AP7)CACAGGAUACC' _entity_poly.pdbx_seq_one_letter_code_can GGAUCUUCUGCUCUGCACAACCUUCGGGUGGUGCGAGAACACAGGAUACC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 A n 1 4 U n 1 5 C n 1 6 U n 1 7 U n 1 8 C n 1 9 U n 1 10 G n 1 11 C n 1 12 U n 1 13 C n 1 14 U n 1 15 G n 1 16 C n 1 17 A n 1 18 C n 1 19 A n 1 20 A n 1 21 C n 1 22 C n 1 23 U n 1 24 U n 1 25 C n 1 26 G n 1 27 G n 1 28 G n 1 29 U n 1 30 G n 1 31 G n 1 32 U n 1 33 G n 1 34 C n 1 35 G n 1 36 A n 1 37 G n 1 38 A n 1 39 AP7 n 1 40 C n 1 41 A n 1 42 C n 1 43 A n 1 44 G n 1 45 G n 1 46 A n 1 47 U n 1 48 A n 1 49 C n 1 50 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 50 _pdbx_entity_src_syn.organism_scientific 'West Nile virus' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 11082 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 AP7 'RNA linking' n ;N1-PROTONATED ADENOSINE-5'-MONOPHOSPHATE ; ? 'C10 H15 N5 O7 P 1' 348.229 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 A 3 3 3 A A A . n A 1 4 U 4 4 4 U U A . n A 1 5 C 5 5 5 C C A . n A 1 6 U 6 6 6 U U A . n A 1 7 U 7 7 7 U U A . n A 1 8 C 8 8 8 C C A . n A 1 9 U 9 9 9 U U A . n A 1 10 G 10 10 10 G G A . n A 1 11 C 11 11 11 C C A . n A 1 12 U 12 12 12 U U A . n A 1 13 C 13 13 13 C C A . n A 1 14 U 14 14 14 U U A . n A 1 15 G 15 15 15 G G A . n A 1 16 C 16 16 16 C C A . n A 1 17 A 17 17 17 A A A . n A 1 18 C 18 18 18 C C A . n A 1 19 A 19 19 19 A A A . n A 1 20 A 20 20 20 A A A . n A 1 21 C 21 21 21 C C A . n A 1 22 C 22 22 22 C C A . n A 1 23 U 23 23 23 U U A . n A 1 24 U 24 24 24 U U A . n A 1 25 C 25 25 25 C C A . n A 1 26 G 26 26 26 G G A . n A 1 27 G 27 27 27 G G A . n A 1 28 G 28 28 28 G G A . n A 1 29 U 29 29 29 U U A . n A 1 30 G 30 30 30 G G A . n A 1 31 G 31 31 31 G G A . n A 1 32 U 32 32 32 U U A . n A 1 33 G 33 33 33 G G A . n A 1 34 C 34 34 34 C C A . n A 1 35 G 35 35 35 G G A . n A 1 36 A 36 36 36 A A A . n A 1 37 G 37 37 37 G G A . n A 1 38 A 38 38 38 A A A . n A 1 39 AP7 39 39 39 AP7 AP7 A . n A 1 40 C 40 40 40 C C A . n A 1 41 A 41 41 41 A A A . n A 1 42 C 42 42 42 C C A . n A 1 43 A 43 43 43 A A A . n A 1 44 G 44 44 44 G G A . n A 1 45 G 45 45 45 G G A . n A 1 46 A 46 46 46 A A A . n A 1 47 U 47 47 47 U U A . n A 1 48 A 48 48 48 A A A . n A 1 49 C 49 49 49 C C A . n A 1 50 C 50 50 50 C C A . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id AP7 _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id AP7 _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9BCI _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 9BCI _struct.title ;Structure of West Nile Virus 3'- stem-loop_50NTS ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9BCI _struct_keywords.text ;3'-stemloop RNA, CA+ mismatch, Flavivirus, UUCG tetraloop, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, SSGCID, RNA ; _struct_keywords.pdbx_keywords RNA # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9BCI _struct_ref.pdbx_db_accession 9BCI _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 9BCI _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 50 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 9BCI _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 50 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 50 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 500 ? 1 MORE 5 ? 1 'SSA (A^2)' 9070 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'NMR Distance Restraints' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A A 38 "O3'" ? ? ? 1_555 A AP7 39 P ? ? A A 38 A AP7 39 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale2 covale both ? A AP7 39 "O3'" ? ? ? 1_555 A C 40 P ? ? A AP7 39 A C 40 1_555 ? ? ? ? ? ? ? 1.609 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 50 N3 ? ? A G 1 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 50 O2 ? ? A G 1 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 50 N4 ? ? A G 1 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A A 48 N1 ? ? A G 2 A A 48 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog5 hydrog ? ? A G 2 O6 ? ? ? 1_555 A A 48 N6 ? ? A G 2 A A 48 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog6 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 49 N3 ? ? A G 2 A C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 49 O2 ? ? A G 2 A C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 49 N4 ? ? A G 2 A C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 47 N3 ? ? A A 3 A U 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 47 O4 ? ? A A 3 A U 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 4 N3 ? ? ? 1_555 A A 46 N1 ? ? A U 4 A A 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 4 O4 ? ? ? 1_555 A A 46 N6 ? ? A U 4 A A 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 45 N1 ? ? A C 5 A G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 45 O6 ? ? A C 5 A G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 45 N2 ? ? A C 5 A G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A U 6 N3 ? ? ? 1_555 A G 44 O6 ? ? A U 6 A G 44 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog17 hydrog ? ? A U 6 O2 ? ? ? 1_555 A G 44 N1 ? ? A U 6 A G 44 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog18 hydrog ? ? A U 7 N3 ? ? ? 1_555 A A 43 N1 ? ? A U 7 A A 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A U 7 O4 ? ? ? 1_555 A A 43 N6 ? ? A U 7 A A 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A U 9 N3 ? ? ? 1_555 A A 41 N1 ? ? A U 9 A A 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A U 9 O4 ? ? ? 1_555 A A 41 N6 ? ? A U 9 A A 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 10 N1 ? ? ? 1_555 A C 40 N3 ? ? A G 10 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 10 N2 ? ? ? 1_555 A C 40 O2 ? ? A G 10 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 10 O6 ? ? ? 1_555 A C 40 N4 ? ? A G 10 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 11 N3 ? ? ? 1_555 A AP7 39 N6 ? ? A C 11 A AP7 39 1_555 ? ? ? ? ? ? 'C-AP7 MISPAIR' ? ? ? hydrog26 hydrog ? ? A U 12 N3 ? ? ? 1_555 A A 38 N1 ? ? A U 12 A A 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A U 12 O4 ? ? ? 1_555 A A 38 N6 ? ? A U 12 A A 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 37 N1 ? ? A C 13 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 37 O6 ? ? A C 13 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 37 N2 ? ? A C 13 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A U 14 N3 ? ? ? 1_555 A A 36 N1 ? ? A U 14 A A 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A U 14 O4 ? ? ? 1_555 A A 36 N6 ? ? A U 14 A A 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 34 N3 ? ? A G 15 A C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 34 O2 ? ? A G 15 A C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 15 O6 ? ? ? 1_555 A C 34 N4 ? ? A G 15 A C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 16 N3 ? ? ? 1_555 A G 33 N1 ? ? A C 16 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 16 N4 ? ? ? 1_555 A G 33 O6 ? ? A C 16 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 16 O2 ? ? ? 1_555 A G 33 N2 ? ? A C 16 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A A 17 N1 ? ? ? 1_555 A U 32 N3 ? ? A A 17 A U 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A A 17 N6 ? ? ? 1_555 A U 32 O4 ? ? A A 17 A U 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 18 N3 ? ? ? 1_555 A G 31 N1 ? ? A C 18 A G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 18 N4 ? ? ? 1_555 A G 31 O6 ? ? A C 18 A G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A C 18 O2 ? ? ? 1_555 A G 31 N2 ? ? A C 18 A G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A A 19 N1 ? ? ? 1_555 A G 30 N1 ? ? A A 19 A G 30 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog45 hydrog ? ? A A 19 N6 ? ? ? 1_555 A G 30 O6 ? ? A A 19 A G 30 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog46 hydrog ? ? A A 20 N1 ? ? ? 1_555 A U 29 N3 ? ? A A 20 A U 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A A 20 N6 ? ? ? 1_555 A U 29 O4 ? ? A A 20 A U 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A C 21 N3 ? ? ? 1_555 A G 28 N1 ? ? A C 21 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A C 21 N4 ? ? ? 1_555 A G 28 O6 ? ? A C 21 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A C 21 O2 ? ? ? 1_555 A G 28 N2 ? ? A C 21 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A C 22 N3 ? ? ? 1_555 A G 27 N1 ? ? A C 22 A G 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A C 22 N4 ? ? ? 1_555 A G 27 O6 ? ? A C 22 A G 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A C 22 O2 ? ? ? 1_555 A G 27 N2 ? ? A C 22 A G 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A U 23 O2 ? ? ? 1_555 A G 26 N1 ? ? A U 23 A G 26 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _pdbx_entry_details.entry_id 9BCI _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_protein_modification N # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NIAID, National Institute of Allergy and Infectious Diseases' _pdbx_SG_project.full_name_of_center 'Seattle Structural Genomics Center for Infectious Disease' _pdbx_SG_project.initial_of_center SSGCID # _pdbx_nmr_ensemble.entry_id 9BCI _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 9BCI _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 '1 mM RNA (50-MER), 20 mM potassium phosphate, 90% H2O/10% D2O' '90% H2O/10% D2O' WNV_SL solution ? 2 '1 mM RNA (50-MER), 100% D2O' '100% D2O' SL_50 solution ? 3 '0.8 mM [U-99% 13C; U-99% 15N] RNA (50-MER), 95% H2O/5% D2O' '95% H2O/5% D2O' 13C15N_SL solution ? 4 '0.8 mM [U-99% 13C; U-99% 15N] RNA (50-MER), 100% D2O' '100% D2O' 13C15N_50 solution ? 5 '0.8 mM [U-2H] RNA (50-MER), 100% D2O' '100% D2O' 'WNV_SL(D)' solution ? # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'RNA (50-MER)' 1 ? mM 'natural abundance' 1 'potassium phosphate' 20 ? mM 'natural abundance' 2 'RNA (50-MER)' 1 ? mM 'natural abundance' 3 'RNA (50-MER)' 0.8 ? mM '[U-99% 13C; U-99% 15N]' 4 'RNA (50-MER)' 0.8 ? mM '[U-99% 13C; U-99% 15N]' 5 'RNA (50-MER)' 0.8 ? mM '[U-2H]' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.details _pdbx_nmr_exptl_sample_conditions.ionic_strength_err _pdbx_nmr_exptl_sample_conditions.ionic_strength_units _pdbx_nmr_exptl_sample_conditions.label _pdbx_nmr_exptl_sample_conditions.pH_err _pdbx_nmr_exptl_sample_conditions.pH_units _pdbx_nmr_exptl_sample_conditions.pressure_err _pdbx_nmr_exptl_sample_conditions.temperature_err _pdbx_nmr_exptl_sample_conditions.temperature_units 1 310 atm 1 6.4 20 ? ? mM 'High T' ? pH ? ? K 2 288 atm 1 6.4 20 ? ? mM 'Low T' ? pH ? ? K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 2 1 '2D 1H-1H NOESY' 2 isotropic 2 1 2 '2D 1H-1H NOESY' 1 isotropic 3 1 2 '2D 1H-1H TOCSY' 1 isotropic 4 2 3 '2D 1H-15N HSQC' 2 isotropic 5 1 4 '2D 1H-13C HSQC' 2 isotropic 6 1 4 '3D 1H-13C NOESY' 2 isotropic 7 1 5 '2D 1H-1H NOESY' 1 isotropic # _pdbx_nmr_refine.entry_id 9BCI _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details 'ORIE function' _pdbx_nmr_refine.software_ordinal 2 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 processing TopSpin ? 'Bruker Biospin' 2 refinement 'X-PLOR NIH' ? 'Schwieters, Kuszewski, Tjandra and Clore' 3 'chemical shift assignment' NMRFAM-SPARKY ? 'Woonghee Lee, John L. Markley' 4 'structure calculation' 'X-PLOR NIH' ? 'Schwieters, Kuszewski, Tjandra and Clore' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 AP7 "C1'" C N R 38 AP7 N1 N Y N 39 AP7 C2 C Y N 40 AP7 N3 N Y N 41 AP7 C4 C Y N 42 AP7 C5 C Y N 43 AP7 C6 C Y N 44 AP7 N6 N N N 45 AP7 N7 N Y N 46 AP7 C8 C Y N 47 AP7 N9 N Y N 48 AP7 "C2'" C N R 49 AP7 "O2'" O N N 50 AP7 "C3'" C N S 51 AP7 "O3'" O N N 52 AP7 "C4'" C N R 53 AP7 "O4'" O N N 54 AP7 "C5'" C N N 55 AP7 "O5'" O N N 56 AP7 OP1 O N N 57 AP7 OP2 O N N 58 AP7 P P N N 59 AP7 OP3 O N N 60 AP7 "H1'" H N N 61 AP7 H1 H N N 62 AP7 H2 H N N 63 AP7 H61 H N N 64 AP7 H62 H N N 65 AP7 H8 H N N 66 AP7 "H2'" H N N 67 AP7 "HO2'" H N N 68 AP7 "H3'" H N N 69 AP7 "HO3'" H N N 70 AP7 "H4'" H N N 71 AP7 "H5''" H N N 72 AP7 "H5'" H N N 73 AP7 HOP2 H N N 74 AP7 HOP3 H N N 75 C OP3 O N N 76 C P P N N 77 C OP1 O N N 78 C OP2 O N N 79 C "O5'" O N N 80 C "C5'" C N N 81 C "C4'" C N R 82 C "O4'" O N N 83 C "C3'" C N S 84 C "O3'" O N N 85 C "C2'" C N R 86 C "O2'" O N N 87 C "C1'" C N R 88 C N1 N N N 89 C C2 C N N 90 C O2 O N N 91 C N3 N N N 92 C C4 C N N 93 C N4 N N N 94 C C5 C N N 95 C C6 C N N 96 C HOP3 H N N 97 C HOP2 H N N 98 C "H5'" H N N 99 C "H5''" H N N 100 C "H4'" H N N 101 C "H3'" H N N 102 C "HO3'" H N N 103 C "H2'" H N N 104 C "HO2'" H N N 105 C "H1'" H N N 106 C H41 H N N 107 C H42 H N N 108 C H5 H N N 109 C H6 H N N 110 G OP3 O N N 111 G P P N N 112 G OP1 O N N 113 G OP2 O N N 114 G "O5'" O N N 115 G "C5'" C N N 116 G "C4'" C N R 117 G "O4'" O N N 118 G "C3'" C N S 119 G "O3'" O N N 120 G "C2'" C N R 121 G "O2'" O N N 122 G "C1'" C N R 123 G N9 N Y N 124 G C8 C Y N 125 G N7 N Y N 126 G C5 C Y N 127 G C6 C N N 128 G O6 O N N 129 G N1 N N N 130 G C2 C N N 131 G N2 N N N 132 G N3 N N N 133 G C4 C Y N 134 G HOP3 H N N 135 G HOP2 H N N 136 G "H5'" H N N 137 G "H5''" H N N 138 G "H4'" H N N 139 G "H3'" H N N 140 G "HO3'" H N N 141 G "H2'" H N N 142 G "HO2'" H N N 143 G "H1'" H N N 144 G H8 H N N 145 G H1 H N N 146 G H21 H N N 147 G H22 H N N 148 U OP3 O N N 149 U P P N N 150 U OP1 O N N 151 U OP2 O N N 152 U "O5'" O N N 153 U "C5'" C N N 154 U "C4'" C N R 155 U "O4'" O N N 156 U "C3'" C N S 157 U "O3'" O N N 158 U "C2'" C N R 159 U "O2'" O N N 160 U "C1'" C N R 161 U N1 N N N 162 U C2 C N N 163 U O2 O N N 164 U N3 N N N 165 U C4 C N N 166 U O4 O N N 167 U C5 C N N 168 U C6 C N N 169 U HOP3 H N N 170 U HOP2 H N N 171 U "H5'" H N N 172 U "H5''" H N N 173 U "H4'" H N N 174 U "H3'" H N N 175 U "HO3'" H N N 176 U "H2'" H N N 177 U "HO2'" H N N 178 U "H1'" H N N 179 U H3 H N N 180 U H5 H N N 181 U H6 H N N 182 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 AP7 "C1'" N9 sing N N 40 AP7 "C1'" "C2'" sing N N 41 AP7 "C1'" "O4'" sing N N 42 AP7 "C1'" "H1'" sing N N 43 AP7 N1 C2 sing Y N 44 AP7 N1 C6 doub Y N 45 AP7 N1 H1 sing N N 46 AP7 C2 N3 doub Y N 47 AP7 C2 H2 sing N N 48 AP7 N3 C4 sing Y N 49 AP7 C4 C5 doub Y N 50 AP7 C4 N9 sing Y N 51 AP7 C5 C6 sing Y N 52 AP7 C5 N7 sing Y N 53 AP7 C6 N6 sing N N 54 AP7 N6 H61 sing N N 55 AP7 N6 H62 sing N N 56 AP7 N7 C8 doub Y N 57 AP7 C8 N9 sing Y N 58 AP7 C8 H8 sing N N 59 AP7 "C2'" "O2'" sing N N 60 AP7 "C2'" "C3'" sing N N 61 AP7 "C2'" "H2'" sing N N 62 AP7 "O2'" "HO2'" sing N N 63 AP7 "C3'" "O3'" sing N N 64 AP7 "C3'" "C4'" sing N N 65 AP7 "C3'" "H3'" sing N N 66 AP7 "O3'" "HO3'" sing N N 67 AP7 "C4'" "O4'" sing N N 68 AP7 "C4'" "C5'" sing N N 69 AP7 "C4'" "H4'" sing N N 70 AP7 "C5'" "O5'" sing N N 71 AP7 "C5'" "H5''" sing N N 72 AP7 "C5'" "H5'" sing N N 73 AP7 "O5'" P sing N N 74 AP7 OP1 P doub N N 75 AP7 OP2 P sing N N 76 AP7 OP2 HOP2 sing N N 77 AP7 P OP3 sing N N 78 AP7 OP3 HOP3 sing N N 79 C OP3 P sing N N 80 C OP3 HOP3 sing N N 81 C P OP1 doub N N 82 C P OP2 sing N N 83 C P "O5'" sing N N 84 C OP2 HOP2 sing N N 85 C "O5'" "C5'" sing N N 86 C "C5'" "C4'" sing N N 87 C "C5'" "H5'" sing N N 88 C "C5'" "H5''" sing N N 89 C "C4'" "O4'" sing N N 90 C "C4'" "C3'" sing N N 91 C "C4'" "H4'" sing N N 92 C "O4'" "C1'" sing N N 93 C "C3'" "O3'" sing N N 94 C "C3'" "C2'" sing N N 95 C "C3'" "H3'" sing N N 96 C "O3'" "HO3'" sing N N 97 C "C2'" "O2'" sing N N 98 C "C2'" "C1'" sing N N 99 C "C2'" "H2'" sing N N 100 C "O2'" "HO2'" sing N N 101 C "C1'" N1 sing N N 102 C "C1'" "H1'" sing N N 103 C N1 C2 sing N N 104 C N1 C6 sing N N 105 C C2 O2 doub N N 106 C C2 N3 sing N N 107 C N3 C4 doub N N 108 C C4 N4 sing N N 109 C C4 C5 sing N N 110 C N4 H41 sing N N 111 C N4 H42 sing N N 112 C C5 C6 doub N N 113 C C5 H5 sing N N 114 C C6 H6 sing N N 115 G OP3 P sing N N 116 G OP3 HOP3 sing N N 117 G P OP1 doub N N 118 G P OP2 sing N N 119 G P "O5'" sing N N 120 G OP2 HOP2 sing N N 121 G "O5'" "C5'" sing N N 122 G "C5'" "C4'" sing N N 123 G "C5'" "H5'" sing N N 124 G "C5'" "H5''" sing N N 125 G "C4'" "O4'" sing N N 126 G "C4'" "C3'" sing N N 127 G "C4'" "H4'" sing N N 128 G "O4'" "C1'" sing N N 129 G "C3'" "O3'" sing N N 130 G "C3'" "C2'" sing N N 131 G "C3'" "H3'" sing N N 132 G "O3'" "HO3'" sing N N 133 G "C2'" "O2'" sing N N 134 G "C2'" "C1'" sing N N 135 G "C2'" "H2'" sing N N 136 G "O2'" "HO2'" sing N N 137 G "C1'" N9 sing N N 138 G "C1'" "H1'" sing N N 139 G N9 C8 sing Y N 140 G N9 C4 sing Y N 141 G C8 N7 doub Y N 142 G C8 H8 sing N N 143 G N7 C5 sing Y N 144 G C5 C6 sing N N 145 G C5 C4 doub Y N 146 G C6 O6 doub N N 147 G C6 N1 sing N N 148 G N1 C2 sing N N 149 G N1 H1 sing N N 150 G C2 N2 sing N N 151 G C2 N3 doub N N 152 G N2 H21 sing N N 153 G N2 H22 sing N N 154 G N3 C4 sing N N 155 U OP3 P sing N N 156 U OP3 HOP3 sing N N 157 U P OP1 doub N N 158 U P OP2 sing N N 159 U P "O5'" sing N N 160 U OP2 HOP2 sing N N 161 U "O5'" "C5'" sing N N 162 U "C5'" "C4'" sing N N 163 U "C5'" "H5'" sing N N 164 U "C5'" "H5''" sing N N 165 U "C4'" "O4'" sing N N 166 U "C4'" "C3'" sing N N 167 U "C4'" "H4'" sing N N 168 U "O4'" "C1'" sing N N 169 U "C3'" "O3'" sing N N 170 U "C3'" "C2'" sing N N 171 U "C3'" "H3'" sing N N 172 U "O3'" "HO3'" sing N N 173 U "C2'" "O2'" sing N N 174 U "C2'" "C1'" sing N N 175 U "C2'" "H2'" sing N N 176 U "O2'" "HO2'" sing N N 177 U "C1'" N1 sing N N 178 U "C1'" "H1'" sing N N 179 U N1 C2 sing N N 180 U N1 C6 sing N N 181 U C2 O2 doub N N 182 U C2 N3 sing N N 183 U N3 C4 sing N N 184 U N3 H3 sing N N 185 U C4 O4 doub N N 186 U C4 C5 sing N N 187 U C5 C6 doub N N 188 U C5 H5 sing N N 189 U C6 H6 sing N N 190 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 9BCI 'double helix' 9BCI 'a-form double helix' 9BCI tetraloop 9BCI 'bulge loop' 9BCI 'mismatched base pair' 9BCI 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 50 1_555 -0.489 0.305 0.530 14.147 1.016 -4.775 1 A_G1:C50_A A 1 ? A 50 ? 19 1 1 A G 2 1_555 A C 49 1_555 -0.667 -0.177 0.636 16.885 4.490 4.840 2 A_G2:C49_A A 2 ? A 49 ? 19 1 1 A A 3 1_555 A U 47 1_555 0.088 -0.057 -0.009 2.984 -8.997 -10.576 3 A_A3:U47_A A 3 ? A 47 ? 20 1 1 A U 4 1_555 A A 46 1_555 0.134 -0.235 -0.042 2.050 -12.375 -3.168 4 A_U4:A46_A A 4 ? A 46 ? 20 1 1 A C 5 1_555 A G 45 1_555 0.481 -0.083 -0.046 2.826 -10.407 0.811 5 A_C5:G45_A A 5 ? A 45 ? 19 1 1 A U 6 1_555 A G 44 1_555 1.376 -0.275 -0.019 0.369 -7.117 -2.864 6 A_U6:G44_A A 6 ? A 44 ? 28 1 1 A U 7 1_555 A A 43 1_555 0.312 -0.263 0.015 -0.546 -8.440 0.327 7 A_U7:A43_A A 7 ? A 43 ? 20 1 1 A U 9 1_555 A A 41 1_555 0.250 -0.216 0.300 0.383 -15.408 -2.215 8 A_U9:A41_A A 9 ? A 41 ? 20 1 1 A G 10 1_555 A C 40 1_555 -0.435 -0.137 0.286 -2.647 -17.301 -0.312 9 A_G10:C40_A A 10 ? A 40 ? 19 1 1 A C 11 1_555 A AP7 39 1_555 1.365 -0.444 0.319 0.348 -22.154 -9.631 10 A_C11:AP739_A A 11 ? A 39 ? ? 1 1 A U 12 1_555 A A 38 1_555 0.042 -0.206 0.035 1.970 -9.031 -0.829 11 A_U12:A38_A A 12 ? A 38 ? 20 1 1 A C 13 1_555 A G 37 1_555 0.724 -0.287 0.254 1.188 -8.530 2.224 12 A_C13:G37_A A 13 ? A 37 ? 19 1 1 A U 14 1_555 A A 36 1_555 0.813 -0.384 0.305 2.998 -0.005 4.040 13 A_U14:A36_A A 14 ? A 36 ? 20 1 1 A G 15 1_555 A C 34 1_555 0.067 0.080 0.166 -0.376 -15.347 -5.510 14 A_G15:C34_A A 15 ? A 34 ? 19 1 1 A C 16 1_555 A G 33 1_555 0.685 -0.272 0.210 0.235 -18.595 -4.349 15 A_C16:G33_A A 16 ? A 33 ? 19 1 1 A A 17 1_555 A U 32 1_555 0.453 -0.210 0.042 -6.413 -14.168 -7.687 16 A_A17:U32_A A 17 ? A 32 ? 20 1 1 A C 18 1_555 A G 31 1_555 0.662 0.096 0.204 -7.137 -11.021 -8.492 17 A_C18:G31_A A 18 ? A 31 ? 19 1 1 A A 19 1_555 A G 30 1_555 0.528 1.101 -0.989 -3.682 1.107 -13.036 18 A_A19:G30_A A 19 ? A 30 ? 8 1 1 A A 20 1_555 A U 29 1_555 0.120 0.089 0.240 4.636 -8.373 -6.552 19 A_A20:U29_A A 20 ? A 29 ? 20 1 1 A C 21 1_555 A G 28 1_555 0.471 -0.155 0.040 2.918 -15.050 3.404 20 A_C21:G28_A A 21 ? A 28 ? 19 1 1 A C 22 1_555 A G 27 1_555 0.745 -0.236 -0.058 1.516 -6.163 4.480 21 A_C22:G27_A A 22 ? A 27 ? 19 1 1 A U 23 1_555 A G 26 1_555 -0.004 -5.115 0.450 -29.113 3.484 -135.713 22 A_U23:G26_A A 23 ? A 26 ? ? 2 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 50 1_555 A G 2 1_555 A C 49 1_555 0.203 -1.777 3.216 -6.045 16.173 25.703 -5.944 -1.355 1.733 32.144 12.014 30.882 1 AA_G1G2:C49C50_AA A 1 ? A 50 ? A 2 ? A 49 ? 1 A G 2 1_555 A C 49 1_555 A A 3 1_555 A U 47 1_555 0.342 -2.277 5.850 -18.397 12.343 50.382 -3.746 -2.265 4.829 13.762 20.511 54.745 2 AA_G2A3:U47C49_AA A 2 ? A 49 ? A 3 ? A 47 ? 1 A A 3 1_555 A U 47 1_555 A U 4 1_555 A A 46 1_555 0.244 -1.579 3.259 -0.897 4.275 34.531 -3.269 -0.541 3.041 7.166 1.503 34.798 3 AA_A3U4:A46U47_AA A 3 ? A 47 ? A 4 ? A 46 ? 1 A U 4 1_555 A A 46 1_555 A C 5 1_555 A G 45 1_555 0.061 -1.588 3.220 0.483 5.550 34.125 -3.484 -0.032 2.934 9.380 -0.817 34.564 4 AA_U4C5:G45A46_AA A 4 ? A 46 ? A 5 ? A 45 ? 1 A C 5 1_555 A G 45 1_555 A U 6 1_555 A G 44 1_555 -0.243 -1.558 3.325 0.753 7.462 34.825 -3.600 0.504 2.933 12.292 -1.241 35.599 5 AA_C5U6:G44G45_AA A 5 ? A 45 ? A 6 ? A 44 ? 1 A U 6 1_555 A G 44 1_555 A U 7 1_555 A A 43 1_555 0.119 -1.655 3.190 2.189 9.609 28.261 -4.994 0.177 2.507 18.966 -4.321 29.897 6 AA_U6U7:A43G44_AA A 6 ? A 44 ? A 7 ? A 43 ? 1 A U 7 1_555 A A 43 1_555 A U 9 1_555 A A 41 1_555 0.065 -3.149 6.292 -0.693 14.534 65.968 -3.871 -0.108 5.572 13.182 0.629 67.376 7 AA_U7U9:A41A43_AA A 7 ? A 43 ? A 9 ? A 41 ? 1 A U 9 1_555 A A 41 1_555 A G 10 1_555 A C 40 1_555 0.046 -1.734 3.086 0.155 10.945 29.632 -4.925 -0.059 2.315 20.538 -0.291 31.547 8 AA_U9G10:C40A41_AA A 9 ? A 41 ? A 10 ? A 40 ? 1 A G 10 1_555 A C 40 1_555 A C 11 1_555 A AP7 39 1_555 -0.586 -1.491 3.100 2.426 8.088 40.968 -2.854 1.051 2.733 11.410 -3.422 41.793 9 AA_G10C11:AP739C40_AA A 10 ? A 40 ? A 11 ? A 39 ? 1 A C 11 1_555 A AP7 39 1_555 A U 12 1_555 A A 38 1_555 0.055 -1.768 3.463 -4.288 3.128 27.751 -4.371 -1.137 3.203 6.447 8.839 28.244 10 AA_C11U12:A38AP739_AA A 11 ? A 39 ? A 12 ? A 38 ? 1 A U 12 1_555 A A 38 1_555 A C 13 1_555 A G 37 1_555 -0.021 -1.490 3.268 -0.891 6.873 35.055 -3.380 -0.089 2.933 11.274 1.462 35.713 11 AA_U12C13:G37A38_AA A 12 ? A 38 ? A 13 ? A 37 ? 1 A C 13 1_555 A G 37 1_555 A U 14 1_555 A A 36 1_555 0.107 -1.497 3.200 0.848 6.446 32.203 -3.682 -0.053 2.856 11.475 -1.510 32.836 12 AA_C13U14:A36G37_AA A 13 ? A 37 ? A 14 ? A 36 ? 1 A U 14 1_555 A A 36 1_555 A G 15 1_555 A C 34 1_555 0.680 -2.271 5.366 -18.845 11.222 42.466 -4.200 -3.168 4.052 14.403 24.186 47.562 13 AA_U14G15:C34A36_AA A 14 ? A 36 ? A 15 ? A 34 ? 1 A G 15 1_555 A C 34 1_555 A C 16 1_555 A G 33 1_555 0.029 -1.500 3.341 0.135 -6.514 37.166 -1.427 -0.026 3.544 -10.124 -0.209 37.713 14 AA_G15C16:G33C34_AA A 15 ? A 34 ? A 16 ? A 33 ? 1 A C 16 1_555 A G 33 1_555 A A 17 1_555 A U 32 1_555 -0.115 -1.647 3.321 2.528 3.948 33.558 -3.453 0.598 3.096 6.797 -4.352 33.874 15 AA_C16A17:U32G33_AA A 16 ? A 33 ? A 17 ? A 32 ? 1 A A 17 1_555 A U 32 1_555 A C 18 1_555 A G 31 1_555 0.015 -1.536 3.293 1.178 -0.722 35.135 -2.434 0.154 3.321 -1.195 -1.951 35.161 16 AA_A17C18:G31U32_AA A 17 ? A 32 ? A 18 ? A 31 ? 1 A C 18 1_555 A G 31 1_555 A A 19 1_555 A G 30 1_555 0.051 -1.745 3.137 9.571 10.492 29.971 -4.619 1.329 2.322 19.004 -17.336 33.096 17 AA_C18A19:G30G31_AA A 18 ? A 31 ? A 19 ? A 30 ? 1 A A 19 1_555 A G 30 1_555 A A 20 1_555 A U 29 1_555 0.174 -1.662 2.996 -8.595 10.406 29.635 -4.481 -1.559 2.172 19.144 15.812 32.501 18 AA_A19A20:U29G30_AA A 19 ? A 30 ? A 20 ? A 29 ? 1 A A 20 1_555 A U 29 1_555 A C 21 1_555 A G 28 1_555 0.477 -1.502 3.267 0.932 5.330 35.495 -3.175 -0.645 3.028 8.680 -1.518 35.892 19 AA_A20C21:G28U29_AA A 20 ? A 29 ? A 21 ? A 28 ? 1 A C 21 1_555 A G 28 1_555 A C 22 1_555 A G 27 1_555 -0.105 -1.752 3.163 0.132 10.173 32.145 -4.496 0.200 2.507 17.823 -0.232 33.676 20 AA_C21C22:G27G28_AA A 21 ? A 28 ? A 22 ? A 27 ? 1 A C 22 1_555 A G 27 1_555 A U 23 1_555 A G 26 1_555 -2.195 -0.175 3.617 18.146 20.525 106.903 -0.383 1.590 3.288 12.645 -11.179 109.300 21 AA_C22U23:G26G27_AA A 22 ? A 27 ? A 23 ? A 26 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' '1 R35 GM126942' 1 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' 'United States' 75N93022C00036 2 # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 'AVANCE II' ? Bruker 600 ? 2 'AVANCE II' ? Bruker 800 ? # _atom_sites.entry_id 9BCI _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O P # loop_ #