HEADER PROTEIN BINDING 09-APR-24 9BCJ TITLE CRYSTAL STRUCTURE OF HUMAN HEMOGLOBIN IN COMPLEX WITH THE HBPA TITLE 2 RECEPTOR FROM CORYNEBACTERIUM DIPHTHERIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMOGLOBIN SUBUNIT ALPHA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ALPHA-GLOBIN,HEMOGLOBIN ALPHA CHAIN; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HEMOGLOBIN SUBUNIT BETA; COMPND 7 CHAIN: B; COMPND 8 SYNONYM: BETA-GLOBIN,HEMOGLOBIN BETA CHAIN; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: MEMBRANE PROTEIN; COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: A31S, TEV CLEAVAGE SCAR SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: CORYNEBACTERIUM DIPHTHERIAE NCTC 13129; SOURCE 11 ORGANISM_TAXID: 257309; SOURCE 12 ATCC: 700971; SOURCE 13 GENE: DIP2330; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 17 EXPRESSION_SYSTEM_PLASMID: PMAPLE4 KEYWDS COMPLEX, HEMOGLOBIN, HEME, BETA-SANDWICH, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR B.J.MAHONEY,D.CASCIO,R.T.CLUBB REVDAT 1 08-JAN-25 9BCJ 0 JRNL AUTH B.J.MAHONEY,L.R.LYMAN,J.FORD,J.SOULE,N.A.CHEUNG,A.K.GORING, JRNL AUTH 2 K.ELLIS-GUARDIOLA,M.J.COLLAZO,D.CASCIO,H.TON-THAT, JRNL AUTH 3 M.P.SCHMITT,R.T.CLUBB JRNL TITL MOLECULAR BASIS OF HEMOGLOBIN BINDING AND HEME REMOVAL IN JRNL TITL 2 CORYNEBACTERIUM DIPHTHERIAE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 122 33122 2025 JRNL REFN ESSN 1091-6490 JRNL PMID 39739808 JRNL DOI 10.1073/PNAS.2411833122 REMARK 2 REMARK 2 RESOLUTION. 1.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.4 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 75.1 REMARK 3 NUMBER OF REFLECTIONS : 43427 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2174 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.78 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 11.35 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE : 0.2632 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 42 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3582 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 109 REMARK 3 SOLVENT ATOMS : 269 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.37960 REMARK 3 B22 (A**2) : 0.37960 REMARK 3 B33 (A**2) : -0.75920 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.230 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.140 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.123 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.133 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.121 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3805 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5182 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1258 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 696 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3805 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 475 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3383 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 0.91 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.45 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 15.30 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -32.8658 -45.8685 12.3822 REMARK 3 T TENSOR REMARK 3 T11: 0.0071 T22: -0.0196 REMARK 3 T33: -0.0289 T12: 0.0295 REMARK 3 T13: -0.0045 T23: 0.0074 REMARK 3 L TENSOR REMARK 3 L11: 1.0356 L22: 0.7193 REMARK 3 L33: 1.8537 L12: -0.2933 REMARK 3 L13: -0.3313 L23: 0.3398 REMARK 3 S TENSOR REMARK 3 S11: 0.0125 S12: 0.0584 S13: 0.2375 REMARK 3 S21: 0.0584 S22: 0.0491 S23: 0.0938 REMARK 3 S31: 0.2375 S32: 0.0938 S33: -0.0616 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -39.3228 -15.7814 3.2935 REMARK 3 T TENSOR REMARK 3 T11: 0.0942 T22: -0.1114 REMARK 3 T33: -0.0401 T12: 0.0501 REMARK 3 T13: 0.0178 T23: -0.0233 REMARK 3 L TENSOR REMARK 3 L11: 0.7076 L22: 2.1749 REMARK 3 L33: 2.9881 L12: 0.3296 REMARK 3 L13: -0.3456 L23: -0.7825 REMARK 3 S TENSOR REMARK 3 S11: 0.0676 S12: 0.1641 S13: -0.6076 REMARK 3 S21: 0.1641 S22: -0.0167 S23: -0.1467 REMARK 3 S31: -0.6076 S32: -0.1467 S33: -0.0509 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): -59.1084 -47.2901 31.3708 REMARK 3 T TENSOR REMARK 3 T11: -0.1039 T22: 0.0894 REMARK 3 T33: -0.0727 T12: 0.0094 REMARK 3 T13: 0.0082 T23: 0.0576 REMARK 3 L TENSOR REMARK 3 L11: 1.3571 L22: 1.2499 REMARK 3 L33: 3.6231 L12: 0.0205 REMARK 3 L13: -0.5272 L23: -1.1418 REMARK 3 S TENSOR REMARK 3 S11: -0.0274 S12: 0.0749 S13: -0.0298 REMARK 3 S21: 0.0749 S22: 0.1992 S23: -0.4559 REMARK 3 S31: -0.0298 S32: -0.4559 S33: -0.1719 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9BCJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-APR-24. REMARK 100 THE DEPOSITION ID IS D_1000270652. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97903 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS BUILT=20220820 REMARK 200 DATA SCALING SOFTWARE : XSCALE, STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43427 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.691 REMARK 200 RESOLUTION RANGE LOW (A) : 19.596 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : 11.33 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 5.23 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 19.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 9.87 REMARK 200 R MERGE FOR SHELL (I) : 0.06050 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 31.81 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG-2000 MME, 100 MM TRIS, 240 MM REMARK 280 TMAO, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 143.07300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 29.46250 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 29.46250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 71.53650 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 29.46250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 29.46250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 214.60950 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 29.46250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.46250 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 71.53650 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 29.46250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.46250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 214.60950 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 143.07300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -153.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS B 143 REMARK 465 LYS B 144 REMARK 465 TYR B 145 REMARK 465 HIS B 146 REMARK 465 SER C 32 REMARK 465 GLU C 33 REMARK 465 GLU C 34 REMARK 465 VAL C 35 REMARK 465 GLU C 107 REMARK 465 THR C 108 REMARK 465 ASN C 109 REMARK 465 HIS C 110 REMARK 465 SER C 111 REMARK 465 GLY C 229 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL B 1 CG1 CG2 REMARK 470 HIS B 2 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 82 CG CD CE NZ REMARK 470 GLU B 90 CG CD OE1 OE2 REMARK 470 LYS C 36 CG CD CE NZ REMARK 470 LYS C 82 CD CE NZ REMARK 470 LYS C 93 CG CD CE NZ REMARK 470 LYS C 105 CD CE NZ REMARK 470 LYS C 141 CD CE NZ REMARK 470 GLU C 154 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 75 37.75 -147.21 REMARK 500 LYS A 90 -63.99 -94.83 REMARK 500 ASN B 80 52.57 -156.57 REMARK 500 CYS B 93 -67.91 -93.37 REMARK 500 PHE C 44 -70.50 69.90 REMARK 500 ASP C 170 -122.27 67.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 87 NE2 REMARK 620 2 HEM A 201 NA 88.9 REMARK 620 3 HEM A 201 NB 89.4 88.6 REMARK 620 4 HEM A 201 NC 94.3 176.8 91.1 REMARK 620 5 HEM A 201 ND 91.0 90.9 179.4 89.4 REMARK 620 6 HOH A 330 O 176.1 93.2 87.4 83.6 92.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 92 NE2 REMARK 620 2 HEM B 201 NA 87.9 REMARK 620 3 HEM B 201 NB 88.6 88.5 REMARK 620 4 HEM B 201 NC 93.6 178.4 91.1 REMARK 620 5 HEM B 201 ND 92.3 91.1 179.0 89.3 REMARK 620 6 HOH B 317 O 174.9 97.1 91.9 81.3 87.4 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9BCH RELATED DB: PDB REMARK 900 9BCH IS THE SOLUTION STRUCTURE OF APO FORM OF HBPA DBREF 9BCJ A 1 141 UNP P69905 HBA_HUMAN 2 142 DBREF 9BCJ B 1 146 UNP P68871 HBB_HUMAN 2 147 DBREF 9BCJ C 32 229 UNP Q6NEE5 Q6NEE5_CORDI 32 229 SEQADV 9BCJ SER C 32 UNP Q6NEE5 ALA 32 CONFLICT SEQRES 1 A 141 VAL LEU SER PRO ALA ASP LYS THR ASN VAL LYS ALA ALA SEQRES 2 A 141 TRP GLY LYS VAL GLY ALA HIS ALA GLY GLU TYR GLY ALA SEQRES 3 A 141 GLU ALA LEU GLU ARG MET PHE LEU SER PHE PRO THR THR SEQRES 4 A 141 LYS THR TYR PHE PRO HIS PHE ASP LEU SER HIS GLY SER SEQRES 5 A 141 ALA GLN VAL LYS GLY HIS GLY LYS LYS VAL ALA ASP ALA SEQRES 6 A 141 LEU THR ASN ALA VAL ALA HIS VAL ASP ASP MET PRO ASN SEQRES 7 A 141 ALA LEU SER ALA LEU SER ASP LEU HIS ALA HIS LYS LEU SEQRES 8 A 141 ARG VAL ASP PRO VAL ASN PHE LYS LEU LEU SER HIS CYS SEQRES 9 A 141 LEU LEU VAL THR LEU ALA ALA HIS LEU PRO ALA GLU PHE SEQRES 10 A 141 THR PRO ALA VAL HIS ALA SER LEU ASP LYS PHE LEU ALA SEQRES 11 A 141 SER VAL SER THR VAL LEU THR SER LYS TYR ARG SEQRES 1 B 146 VAL HIS LEU THR PRO GLU GLU LYS SER ALA VAL THR ALA SEQRES 2 B 146 LEU TRP GLY LYS VAL ASN VAL ASP GLU VAL GLY GLY GLU SEQRES 3 B 146 ALA LEU GLY ARG LEU LEU VAL VAL TYR PRO TRP THR GLN SEQRES 4 B 146 ARG PHE PHE GLU SER PHE GLY ASP LEU SER THR PRO ASP SEQRES 5 B 146 ALA VAL MET GLY ASN PRO LYS VAL LYS ALA HIS GLY LYS SEQRES 6 B 146 LYS VAL LEU GLY ALA PHE SER ASP GLY LEU ALA HIS LEU SEQRES 7 B 146 ASP ASN LEU LYS GLY THR PHE ALA THR LEU SER GLU LEU SEQRES 8 B 146 HIS CYS ASP LYS LEU HIS VAL ASP PRO GLU ASN PHE ARG SEQRES 9 B 146 LEU LEU GLY ASN VAL LEU VAL CYS VAL LEU ALA HIS HIS SEQRES 10 B 146 PHE GLY LYS GLU PHE THR PRO PRO VAL GLN ALA ALA TYR SEQRES 11 B 146 GLN LYS VAL VAL ALA GLY VAL ALA ASN ALA LEU ALA HIS SEQRES 12 B 146 LYS TYR HIS SEQRES 1 C 198 SER GLU GLU VAL LYS ASN ALA ASP LEU TYR TRP GLY PHE SEQRES 2 C 198 SER GLY SER SER HIS HIS LYS TYR ASP HIS ASN GLY PRO SEQRES 3 C 198 LYS PHE GLU LYS ALA GLY LYS GLY ALA GLU LEU THR ASN SEQRES 4 C 198 ILE ASP ALA ALA SER ALA TYR ALA GLU THR PHE LYS LYS SEQRES 5 C 198 GLY VAL PHE PRO ASN ASN LYS ARG GLU LYS SER ASP ILE SEQRES 6 C 198 LEU VAL PHE HIS ASN GLY GLU VAL LYS THR GLU THR ASN SEQRES 7 C 198 HIS SER SER TYR GLN ILE ASN TRP PRO GLY GLU VAL THR SEQRES 8 C 198 MET LYS LEU GLY TYR GLY ASP GLY LEU VAL ILE LYS ASP SEQRES 9 C 198 LEU ASN LEU MET LEU LYS ASN GLY ASN MET GLY GLU LEU SEQRES 10 C 198 LYS ALA THR VAL GLY GLU ASN SER ASN ILE THR LEU PHE SEQRES 11 C 198 ASP VAL GLN GLU TYR SER VAL SER ASP ASN THR ILE THR SEQRES 12 C 198 VAL THR PRO LYS ILE PRO PRO CYS THR THR GLY THR TRP SEQRES 13 C 198 LYS PRO TRP HIS ASN ASP LEU THR SER LYS LEU GLY SER SEQRES 14 C 198 LEU LYS SER VAL PHE PHE GLU SER TYR THR CYS ASN ASN SEQRES 15 C 198 ASP ASP ILE ALA LYS LYS PRO LEU PRO LEU THR VAL VAL SEQRES 16 C 198 LEU ASN GLY HET HEM A 201 43 HET GOL A 202 6 HET HEM B 201 43 HET GOL B 202 6 HET PO4 B 203 5 HET GOL C 301 6 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM GOL GLYCEROL HETNAM PO4 PHOSPHATE ION HETSYN HEM HEME HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 HEM 2(C34 H32 FE N4 O4) FORMUL 5 GOL 3(C3 H8 O3) FORMUL 8 PO4 O4 P 3- FORMUL 10 HOH *269(H2 O) HELIX 1 AA1 SER A 3 LYS A 16 1 14 HELIX 2 AA2 VAL A 17 ALA A 19 5 3 HELIX 3 AA3 HIS A 20 PHE A 36 1 17 HELIX 4 AA4 PRO A 37 PHE A 43 5 7 HELIX 5 AA5 SER A 52 HIS A 72 1 21 HELIX 6 AA6 ASP A 75 LEU A 80 1 6 HELIX 7 AA7 LEU A 80 HIS A 89 1 10 HELIX 8 AA8 ASP A 94 LEU A 113 1 20 HELIX 9 AA9 THR A 118 SER A 138 1 21 HELIX 10 AB1 THR B 4 GLY B 16 1 13 HELIX 11 AB2 GLU B 22 TYR B 35 1 14 HELIX 12 AB3 PRO B 36 GLY B 46 5 11 HELIX 13 AB4 THR B 50 ASN B 57 1 8 HELIX 14 AB5 ASN B 57 HIS B 77 1 21 HELIX 15 AB6 ASN B 80 PHE B 85 1 6 HELIX 16 AB7 PHE B 85 LYS B 95 1 11 HELIX 17 AB8 PRO B 100 GLY B 119 1 20 HELIX 18 AB9 LYS B 120 PHE B 122 5 3 HELIX 19 AC1 THR B 123 ALA B 142 1 20 HELIX 20 AC2 SER C 45 HIS C 50 5 6 HELIX 21 AC3 TYR C 52 GLY C 56 5 5 HELIX 22 AC4 ASP C 72 ALA C 76 5 5 HELIX 23 AC5 TYR C 77 LYS C 83 1 7 HELIX 24 AC6 HIS C 191 GLY C 199 1 9 HELIX 25 AC7 LEU C 201 PHE C 206 5 6 HELIX 26 AC8 ASN C 212 ALA C 217 1 6 SHEET 1 AA1 6 LYS C 58 GLY C 63 0 SHEET 2 AA1 6 GLU C 120 LYS C 124 -1 O LYS C 124 N LYS C 58 SHEET 3 AA1 6 LEU C 131 LYS C 141 -1 O ILE C 133 N VAL C 121 SHEET 4 AA1 6 TYR C 113 ASN C 116 -1 N ILE C 115 O LEU C 138 SHEET 5 AA1 6 ASP C 95 LYS C 105 -1 N GLU C 103 O ASN C 116 SHEET 6 AA1 6 ALA C 66 ASN C 70 -1 N THR C 69 O ILE C 96 SHEET 1 AA210 LYS C 58 GLY C 63 0 SHEET 2 AA210 GLU C 120 LYS C 124 -1 O LYS C 124 N LYS C 58 SHEET 3 AA210 LEU C 131 LYS C 141 -1 O ILE C 133 N VAL C 121 SHEET 4 AA210 MET C 145 VAL C 152 -1 O THR C 151 N LYS C 134 SHEET 5 AA210 ASN C 155 SER C 169 -1 O LEU C 160 N LEU C 148 SHEET 6 AA210 THR C 172 PRO C 177 -1 O THR C 176 N GLU C 165 SHEET 7 AA210 LEU C 223 ASN C 228 -1 O VAL C 225 N ILE C 173 SHEET 8 AA210 ASN C 37 TRP C 42 -1 N ASN C 37 O ASN C 228 SHEET 9 AA210 ASP C 95 LYS C 105 -1 O PHE C 99 N LEU C 40 SHEET 10 AA210 ALA C 66 ASN C 70 -1 N THR C 69 O ILE C 96 SSBOND 1 CYS C 182 CYS C 211 1555 1555 2.04 LINK NE2 HIS A 87 FE HEM A 201 1555 1555 2.11 LINK FE HEM A 201 O HOH A 330 1555 1555 2.17 LINK NE2 HIS B 92 FE HEM B 201 1555 1555 2.03 LINK FE HEM B 201 O HOH B 317 1555 1555 2.28 CRYST1 58.925 58.925 286.146 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016971 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016971 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003495 0.00000