HEADER IMMUNE SYSTEM 10-APR-24 9BD0 TITLE SOLUTION STRUCTURE OF A DISULFIDE INSERTION MUTANT OF S. AUREUS SPIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYELOPEROXIDASE INHIBITOR SPIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 STRAIN: NEWMAN; SOURCE 5 GENE: CNH35_02325; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PT7HMT KEYWDS MYELOPEROXIDASE, INHIBITOR, IMMUNE EVASION, IMMUNE SYSTEM EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.B.MISHRA,O.PRAKASH,B.V.GEISBRECHT REVDAT 3 03-JUL-24 9BD0 1 JRNL REVDAT 2 26-JUN-24 9BD0 1 JRNL REVDAT 1 29-MAY-24 9BD0 0 JRNL AUTH S.FATEHI,N.MISHRA,T.J.HERDENDORF,O.PRAKASH,B.V.GEISBRECHT JRNL TITL STAPHYLOCOCCAL PEROXIDASE INHIBITOR (SPIN): INVESTIGATION OF JRNL TITL 2 THE INHIBITORY N-TERMINAL DOMAIN VIA A STABILIZING DISULFIDE JRNL TITL 3 INSERTION. JRNL REF ARCH.BIOCHEM.BIOPHYS. V. 758 10060 2024 JRNL REFN ESSN 1096-0384 JRNL PMID 38880318 JRNL DOI 10.1016/J.ABB.2024.110060 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9BD0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-APR-24. REMARK 100 THE DEPOSITION ID IS D_1000283072. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 SPIN-CYS, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D DISPI-TOCSY; REMARK 210 3D C(CO)NH; 3D H(CCO)NH; 3D HNCA; REMARK 210 3D HNCACB; 3D HN(CO)CA; 3D HNCO; REMARK 210 3D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE NEO REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 4.1, NMRPIPE, CARA REMARK 210 1.9.1, CYANA 2.1 REMARK 210 METHOD USED : DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 300 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 SER A -3 REMARK 465 THR A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 2 SG CYS A 12 1.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 2 93.07 -64.54 REMARK 500 1 ASN A 6 22.90 -156.62 REMARK 500 1 LEU A 8 99.33 -179.02 REMARK 500 1 LEU A 10 109.51 -55.76 REMARK 500 1 CYS A 12 32.08 -99.17 REMARK 500 1 ASN A 15 -74.96 -179.61 REMARK 500 1 PHE A 16 34.34 -179.34 REMARK 500 1 ALA A 32 -169.00 -72.22 REMARK 500 1 SER A 51 -174.06 177.08 REMARK 500 1 HIS A 71 44.50 37.41 REMARK 500 2 GLN A 5 -57.40 74.55 REMARK 500 2 VAL A 9 25.21 -152.60 REMARK 500 2 LEU A 10 -170.00 52.46 REMARK 500 2 HIS A 11 26.64 -143.80 REMARK 500 2 CYS A 12 65.18 -162.70 REMARK 500 2 PHE A 16 48.09 178.05 REMARK 500 2 LEU A 17 171.91 -58.43 REMARK 500 2 ALA A 32 -168.77 -71.50 REMARK 500 2 SER A 51 -173.53 178.15 REMARK 500 2 VAL A 72 45.37 36.19 REMARK 500 3 GLN A 5 -41.48 -153.29 REMARK 500 3 LEU A 8 -74.77 -143.28 REMARK 500 3 VAL A 9 129.96 -178.46 REMARK 500 3 LEU A 10 -167.86 -61.06 REMARK 500 3 CYS A 12 103.09 -51.98 REMARK 500 3 ALA A 14 81.84 55.38 REMARK 500 3 ASN A 15 -169.34 -174.00 REMARK 500 3 SER A 51 -169.50 175.15 REMARK 500 3 GLU A 70 53.31 -95.10 REMARK 500 3 VAL A 72 83.37 47.88 REMARK 500 4 CYS A 2 32.05 -174.00 REMARK 500 4 GLN A 5 -43.18 -177.78 REMARK 500 4 ASN A 6 33.04 -162.52 REMARK 500 4 LEU A 8 -74.71 -179.35 REMARK 500 4 HIS A 11 106.63 63.77 REMARK 500 4 ALA A 14 51.28 -96.47 REMARK 500 4 ASN A 15 -74.99 -104.97 REMARK 500 4 PHE A 16 39.70 -179.63 REMARK 500 4 ALA A 32 -169.03 -75.19 REMARK 500 4 SER A 51 -172.14 175.34 REMARK 500 4 VAL A 66 16.66 -141.23 REMARK 500 4 VAL A 72 80.17 47.60 REMARK 500 5 ASN A 6 25.27 -160.61 REMARK 500 5 LEU A 8 99.64 -178.82 REMARK 500 5 CYS A 12 107.68 -51.12 REMARK 500 5 ALA A 14 86.49 52.86 REMARK 500 5 ASN A 15 -169.30 -175.34 REMARK 500 5 LEU A 17 177.16 -58.03 REMARK 500 5 ALA A 32 -168.43 -71.32 REMARK 500 5 SER A 51 -170.65 175.39 REMARK 500 REMARK 500 THIS ENTRY HAS 189 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 52103 RELATED DB: BMRB DBREF1 9BD0 A 1 73 UNP A0A290QEM1_STAAE DBREF2 9BD0 A A0A290QEM1 30 102 SEQADV 9BD0 GLY A -4 UNP A0A290QEM EXPRESSION TAG SEQADV 9BD0 SER A -3 UNP A0A290QEM EXPRESSION TAG SEQADV 9BD0 THR A -2 UNP A0A290QEM EXPRESSION TAG SEQADV 9BD0 GLY A -1 UNP A0A290QEM EXPRESSION TAG SEQADV 9BD0 SER A 0 UNP A0A290QEM EXPRESSION TAG SEQADV 9BD0 CYS A 2 UNP A0A290QEM VAL 31 ENGINEERED MUTATION SEQADV 9BD0 CYS A 12 UNP A0A290QEM ASP 41 ENGINEERED MUTATION SEQRES 1 A 78 GLY SER THR GLY SER LYS CYS TYR SER GLN ASN GLY LEU SEQRES 2 A 78 VAL LEU HIS CYS ASP ALA ASN PHE LEU GLU HIS GLU LEU SEQRES 3 A 78 SER TYR ILE ASP VAL LEU LEU ASP LYS ASN ALA ASP GLN SEQRES 4 A 78 ALA THR LYS ASP ASN LEU ARG SER TYR PHE ALA ASP LYS SEQRES 5 A 78 GLY LEU HIS SER ILE LYS ASP ILE ILE ASN LYS ALA LYS SEQRES 6 A 78 GLN ASP GLY PHE ASP VAL SER LYS TYR GLU HIS VAL LYS HELIX 1 AA1 LEU A 17 SER A 22 1 6 HELIX 2 AA2 SER A 22 ASP A 29 1 8 HELIX 3 AA3 ASP A 33 SER A 42 1 10 HELIX 4 AA4 SER A 42 GLY A 48 1 7 HELIX 5 AA5 SER A 51 GLY A 63 1 13 HELIX 6 AA6 VAL A 66 GLU A 70 5 5 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1