HEADER LIGASE 24-APR-24 9BIV TITLE CRYSTAL STRUCTURE OF UBC13 WITH A NEW ACTIVE SITE LOOP CONFORMATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN-CONJUGATING ENZYME E2 VARIANT 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DDVIT 1,ENTEROCYTE DIFFERENTIATION-ASSOCIATED FACTOR 1,EDAF- COMPND 5 1,ENTEROCYTE DIFFERENTIATION-PROMOTING FACTOR 1,EDPF-1,MMS2 HOMOLOG, COMPND 6 VITAMIN D3-INDUCIBLE PROTEIN; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: UBIQUITIN-CONJUGATING ENZYME E2 N; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: BENDLESS-LIKE UBIQUITIN-CONJUGATING ENZYME,E2 UBIQUITIN- COMPND 12 CONJUGATING ENZYME N,UBC13,UBCH13,UBIQUITIN CARRIER PROTEIN N, COMPND 13 UBIQUITIN-PROTEIN LIGASE N; COMPND 14 EC: 2.3.2.23; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UBE2V2, MMS2, UEV2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: UBE2N, BLU; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS E2, CONJUGATING, ENZYME, UBIQUITIN, UBC13, MMS2, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR R.A.FARRAJ,R.A.EDWARDS,J.N.M.GLOVER REVDAT 1 08-MAY-24 9BIV 0 JRNL AUTH R.A.FARRAJ,R.A.EDWARDS,J.N.M.GLOVER JRNL TITL CRYSTAL STRUCTURE OF UBC13 WITH A NEW ACTIVE SITE LOOP JRNL TITL 2 CONFORMATION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.16_3546: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 37360 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.145 REMARK 3 R VALUE (WORKING SET) : 0.144 REMARK 3 FREE R VALUE : 0.177 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 1920 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 4.0491 - 3.2142 1.00 2546 153 0.1281 0.1812 REMARK 3 2 3.2142 - 2.8080 1.00 2590 122 0.1388 0.1617 REMARK 3 3 2.8080 - 2.5513 1.00 2534 133 0.1430 0.1666 REMARK 3 4 2.5513 - 2.3685 1.00 2561 130 0.1358 0.1692 REMARK 3 5 2.3685 - 2.2288 1.00 2536 129 0.1380 0.1900 REMARK 3 6 2.2288 - 2.1172 1.00 2550 121 0.1317 0.1664 REMARK 3 7 2.1172 - 2.0250 1.00 2512 148 0.1324 0.1610 REMARK 3 8 2.0250 - 1.9471 1.00 2519 141 0.1417 0.1717 REMARK 3 9 1.9471 - 1.8799 1.00 2527 138 0.1505 0.1895 REMARK 3 10 1.8799 - 1.8211 1.00 2541 139 0.1555 0.1890 REMARK 3 11 1.8211 - 1.7691 1.00 2484 133 0.1651 0.2057 REMARK 3 12 1.7691 - 1.7225 1.00 2472 150 0.1686 0.1929 REMARK 3 13 1.7225 - 1.6805 0.95 2439 131 0.1750 0.1943 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.700 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2346 REMARK 3 ANGLE : 0.803 3185 REMARK 3 CHIRALITY : 0.053 347 REMARK 3 PLANARITY : 0.006 418 REMARK 3 DIHEDRAL : 12.289 1452 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 6 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.5786 21.0861 23.8000 REMARK 3 T TENSOR REMARK 3 T11: 0.1172 T22: 0.1181 REMARK 3 T33: 0.1072 T12: 0.0164 REMARK 3 T13: -0.0185 T23: -0.0428 REMARK 3 L TENSOR REMARK 3 L11: 2.6974 L22: 1.7737 REMARK 3 L33: 5.5752 L12: 0.7338 REMARK 3 L13: -2.1055 L23: -0.3152 REMARK 3 S TENSOR REMARK 3 S11: 0.0535 S12: -0.2992 S13: 0.0458 REMARK 3 S21: 0.2139 S22: -0.1540 S23: -0.0277 REMARK 3 S31: -0.1857 S32: 0.1530 S33: 0.1307 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 25 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.7521 21.1942 13.1214 REMARK 3 T TENSOR REMARK 3 T11: 0.1151 T22: 0.0808 REMARK 3 T33: 0.1025 T12: 0.0182 REMARK 3 T13: -0.0079 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 2.7074 L22: 0.8097 REMARK 3 L33: 1.8765 L12: 0.1677 REMARK 3 L13: -1.2477 L23: 0.3471 REMARK 3 S TENSOR REMARK 3 S11: 0.0082 S12: 0.0409 S13: 0.0138 REMARK 3 S21: 0.0986 S22: -0.0451 S23: 0.0812 REMARK 3 S31: -0.1106 S32: -0.1382 S33: 0.0477 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 45 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.4502 13.2362 3.7682 REMARK 3 T TENSOR REMARK 3 T11: 0.0788 T22: 0.0587 REMARK 3 T33: 0.0895 T12: -0.0157 REMARK 3 T13: 0.0036 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 1.5969 L22: 2.5459 REMARK 3 L33: 2.4202 L12: -0.8390 REMARK 3 L13: -0.3247 L23: 1.0194 REMARK 3 S TENSOR REMARK 3 S11: 0.0448 S12: 0.1480 S13: 0.1355 REMARK 3 S21: -0.1223 S22: 0.0145 S23: -0.2540 REMARK 3 S31: -0.0926 S32: 0.0194 S33: -0.0278 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.7390 9.7612 22.4625 REMARK 3 T TENSOR REMARK 3 T11: 0.1179 T22: 0.1407 REMARK 3 T33: 0.1167 T12: 0.0044 REMARK 3 T13: 0.0404 T23: 0.0230 REMARK 3 L TENSOR REMARK 3 L11: 5.9432 L22: 4.5165 REMARK 3 L33: 3.3065 L12: -1.5048 REMARK 3 L13: 1.6171 L23: 2.4157 REMARK 3 S TENSOR REMARK 3 S11: -0.1497 S12: -0.5286 S13: -0.3424 REMARK 3 S21: 0.3728 S22: 0.1274 S23: 0.3419 REMARK 3 S31: 0.2291 S32: -0.0914 S33: -0.0070 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 79 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.1761 7.8310 3.2216 REMARK 3 T TENSOR REMARK 3 T11: 0.0734 T22: 0.0579 REMARK 3 T33: 0.1072 T12: -0.0056 REMARK 3 T13: -0.0038 T23: -0.0099 REMARK 3 L TENSOR REMARK 3 L11: 0.6361 L22: 1.9862 REMARK 3 L33: 7.2016 L12: 0.2704 REMARK 3 L13: 0.4406 L23: -1.0612 REMARK 3 S TENSOR REMARK 3 S11: 0.0031 S12: 0.1268 S13: -0.1126 REMARK 3 S21: 0.0304 S22: -0.0210 S23: 0.2034 REMARK 3 S31: -0.2963 S32: -0.3512 S33: -0.0582 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 88 THROUGH 107 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.2157 1.0834 8.7866 REMARK 3 T TENSOR REMARK 3 T11: 0.1288 T22: 0.0759 REMARK 3 T33: 0.1213 T12: -0.0086 REMARK 3 T13: 0.0213 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 2.0503 L22: 1.2556 REMARK 3 L33: 5.8840 L12: -0.9801 REMARK 3 L13: 0.9261 L23: 0.2134 REMARK 3 S TENSOR REMARK 3 S11: 0.0346 S12: -0.0890 S13: -0.2103 REMARK 3 S21: 0.0690 S22: -0.0640 S23: 0.1969 REMARK 3 S31: 0.3661 S32: -0.0955 S33: -0.0020 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 108 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.8599 7.6801 23.2285 REMARK 3 T TENSOR REMARK 3 T11: 0.1433 T22: 0.1987 REMARK 3 T33: 0.1154 T12: 0.0428 REMARK 3 T13: -0.0125 T23: 0.0164 REMARK 3 L TENSOR REMARK 3 L11: 2.2879 L22: 6.4777 REMARK 3 L33: 4.6767 L12: 2.1382 REMARK 3 L13: -1.1009 L23: 3.2769 REMARK 3 S TENSOR REMARK 3 S11: 0.0828 S12: -0.3170 S13: -0.1241 REMARK 3 S21: 0.3366 S22: 0.0192 S23: -0.1115 REMARK 3 S31: 0.4967 S32: 0.3770 S33: -0.1039 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 127 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.4084 9.9095 11.1872 REMARK 3 T TENSOR REMARK 3 T11: 0.0899 T22: 0.0798 REMARK 3 T33: 0.1064 T12: -0.0074 REMARK 3 T13: -0.0130 T23: -0.0059 REMARK 3 L TENSOR REMARK 3 L11: 4.0031 L22: 2.8128 REMARK 3 L33: 3.6710 L12: -2.3466 REMARK 3 L13: -2.4764 L23: 1.8397 REMARK 3 S TENSOR REMARK 3 S11: -0.0071 S12: -0.1735 S13: 0.0495 REMARK 3 S21: 0.1640 S22: 0.1139 S23: -0.1384 REMARK 3 S31: 0.1292 S32: 0.1364 S33: -0.1416 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 128 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.2188 4.9854 -2.3328 REMARK 3 T TENSOR REMARK 3 T11: 0.0993 T22: 0.0562 REMARK 3 T33: 0.0826 T12: -0.0107 REMARK 3 T13: 0.0081 T23: -0.0257 REMARK 3 L TENSOR REMARK 3 L11: 4.2211 L22: 4.2204 REMARK 3 L33: 4.4867 L12: -1.1159 REMARK 3 L13: 0.5159 L23: -0.6714 REMARK 3 S TENSOR REMARK 3 S11: 0.0220 S12: 0.0173 S13: 0.0178 REMARK 3 S21: -0.0607 S22: -0.0133 S23: 0.0835 REMARK 3 S31: -0.0443 S32: -0.0813 S33: 0.0466 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 4 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.2485 23.6939 47.6467 REMARK 3 T TENSOR REMARK 3 T11: 0.3822 T22: 0.2546 REMARK 3 T33: 0.1232 T12: 0.0313 REMARK 3 T13: -0.0202 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 5.9423 L22: 2.6852 REMARK 3 L33: 2.1033 L12: 0.5243 REMARK 3 L13: -0.0913 L23: -0.9831 REMARK 3 S TENSOR REMARK 3 S11: -0.1552 S12: -0.6842 S13: -0.0071 REMARK 3 S21: 0.6917 S22: 0.1385 S23: -0.2389 REMARK 3 S31: 0.2555 S32: 0.2280 S33: -0.0599 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 18 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.4803 22.5773 40.4055 REMARK 3 T TENSOR REMARK 3 T11: 0.1976 T22: 0.1977 REMARK 3 T33: 0.1214 T12: 0.0067 REMARK 3 T13: 0.0180 T23: 0.0400 REMARK 3 L TENSOR REMARK 3 L11: 5.1909 L22: 1.7894 REMARK 3 L33: 1.9377 L12: -2.3983 REMARK 3 L13: 0.3607 L23: -1.3032 REMARK 3 S TENSOR REMARK 3 S11: 0.0247 S12: -0.0903 S13: -0.3545 REMARK 3 S21: 0.1773 S22: 0.0631 S23: 0.4915 REMARK 3 S31: 0.1103 S32: -0.2475 S33: 0.0030 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 31 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.5022 27.4602 32.1610 REMARK 3 T TENSOR REMARK 3 T11: 0.1160 T22: 0.1365 REMARK 3 T33: 0.0813 T12: 0.0048 REMARK 3 T13: 0.0190 T23: -0.0031 REMARK 3 L TENSOR REMARK 3 L11: 3.7236 L22: 2.7482 REMARK 3 L33: 2.6062 L12: -1.7242 REMARK 3 L13: 2.0702 L23: -1.3327 REMARK 3 S TENSOR REMARK 3 S11: -0.0220 S12: -0.1655 S13: 0.0329 REMARK 3 S21: 0.1301 S22: 0.0439 S23: 0.1351 REMARK 3 S31: 0.0140 S32: -0.1791 S33: -0.0520 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 58 THROUGH 67 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.0853 27.6578 38.4831 REMARK 3 T TENSOR REMARK 3 T11: 0.1134 T22: 0.2558 REMARK 3 T33: 0.2073 T12: 0.0381 REMARK 3 T13: -0.0556 T23: -0.0531 REMARK 3 L TENSOR REMARK 3 L11: 1.8708 L22: 5.1499 REMARK 3 L33: 6.0772 L12: 0.6873 REMARK 3 L13: 0.4300 L23: -1.5914 REMARK 3 S TENSOR REMARK 3 S11: 0.0086 S12: -0.2860 S13: -0.1955 REMARK 3 S21: 0.0680 S22: 0.3021 S23: -0.7546 REMARK 3 S31: 0.0615 S32: 0.5732 S33: -0.0990 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 68 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.3712 33.8503 30.5150 REMARK 3 T TENSOR REMARK 3 T11: 0.1181 T22: 0.1076 REMARK 3 T33: 0.1279 T12: -0.0032 REMARK 3 T13: -0.0110 T23: -0.0145 REMARK 3 L TENSOR REMARK 3 L11: 1.4468 L22: 1.1687 REMARK 3 L33: 4.2030 L12: -0.1923 REMARK 3 L13: 1.6822 L23: -0.0819 REMARK 3 S TENSOR REMARK 3 S11: -0.0705 S12: -0.0480 S13: 0.1866 REMARK 3 S21: 0.1740 S22: -0.0244 S23: -0.0830 REMARK 3 S31: -0.2370 S32: 0.1293 S33: 0.0378 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 114 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.8407 44.0341 23.2418 REMARK 3 T TENSOR REMARK 3 T11: 0.3361 T22: 0.2961 REMARK 3 T33: 0.4399 T12: -0.0727 REMARK 3 T13: -0.0353 T23: -0.0029 REMARK 3 L TENSOR REMARK 3 L11: 6.3117 L22: 1.9804 REMARK 3 L33: 1.9555 L12: 1.1532 REMARK 3 L13: -3.4710 L23: -0.9242 REMARK 3 S TENSOR REMARK 3 S11: 0.2862 S12: -0.3912 S13: 1.0294 REMARK 3 S21: 0.2775 S22: 0.0341 S23: -0.2057 REMARK 3 S31: -0.6575 S32: 0.6544 S33: -0.1765 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 124 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.8648 36.5989 18.4045 REMARK 3 T TENSOR REMARK 3 T11: 0.0987 T22: 0.1279 REMARK 3 T33: 0.1273 T12: 0.0215 REMARK 3 T13: -0.0229 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 3.7317 L22: 4.2707 REMARK 3 L33: 3.5159 L12: -0.4735 REMARK 3 L13: 1.1124 L23: -0.1423 REMARK 3 S TENSOR REMARK 3 S11: -0.0304 S12: 0.1424 S13: 0.2690 REMARK 3 S21: -0.1474 S22: -0.0446 S23: -0.0585 REMARK 3 S31: -0.1906 S32: -0.0644 S33: 0.0379 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9BIV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-APR-24. REMARK 100 THE DEPOSITION ID IS D_1000283448. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 R 200K-A REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37365 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.680 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.3700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: UBC13-MMS2 HETERODIMER WAS REMARK 280 CONCENTRATED TO 12 MG/ML AND STORED IN 50 MM TRIS PH 7.5, 150 MM REMARK 280 NACL, 1MM TCEP. COMPLEX WAS LEFT TO SLOWLY EQUILIBRATE FROM 277K REMARK 280 TO 298 OVERNIGHT, BATCH MODE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 43.18050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.47100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 43.18050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.47100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 VAL A 3 REMARK 465 SER A 4 REMARK 465 THR A 5 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLY B 3 REMARK 465 ILE B 152 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 70 O HOH B 201 1.98 REMARK 500 O HOH B 334 O HOH B 399 1.99 REMARK 500 O HOH A 325 O HOH A 364 2.09 REMARK 500 O HOH B 340 O HOH B 370 2.14 REMARK 500 O HOH A 366 O HOH A 428 2.16 REMARK 500 O HOH A 210 O HOH A 222 2.17 REMARK 500 O HOH A 319 O HOH A 320 2.17 REMARK 500 O HOH B 305 O HOH B 345 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 241 O HOH A 367 4545 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 108 54.84 -118.17 REMARK 500 LYS B 92 -90.58 -123.34 REMARK 500 REMARK 500 REMARK: NULL DBREF 9BIV A 1 145 UNP Q15819 UB2V2_HUMAN 1 145 DBREF 9BIV B 1 152 UNP P61088 UBE2N_HUMAN 1 152 SEQRES 1 A 145 MET ALA VAL SER THR GLY VAL LYS VAL PRO ARG ASN PHE SEQRES 2 A 145 ARG LEU LEU GLU GLU LEU GLU GLU GLY GLN LYS GLY VAL SEQRES 3 A 145 GLY ASP GLY THR VAL SER TRP GLY LEU GLU ASP ASP GLU SEQRES 4 A 145 ASP MET THR LEU THR ARG TRP THR GLY MET ILE ILE GLY SEQRES 5 A 145 PRO PRO ARG THR ASN TYR GLU ASN ARG ILE TYR SER LEU SEQRES 6 A 145 LYS VAL GLU CYS GLY PRO LYS TYR PRO GLU ALA PRO PRO SEQRES 7 A 145 SER VAL ARG PHE VAL THR LYS ILE ASN MET ASN GLY ILE SEQRES 8 A 145 ASN ASN SER SER GLY MET VAL ASP ALA ARG SER ILE PRO SEQRES 9 A 145 VAL LEU ALA LYS TRP GLN ASN SER TYR SER ILE LYS VAL SEQRES 10 A 145 VAL LEU GLN GLU LEU ARG ARG LEU MET MET SER LYS GLU SEQRES 11 A 145 ASN MET LYS LEU PRO GLN PRO PRO GLU GLY GLN THR TYR SEQRES 12 A 145 ASN ASN SEQRES 1 B 152 MET ALA GLY LEU PRO ARG ARG ILE ILE LYS GLU THR GLN SEQRES 2 B 152 ARG LEU LEU ALA GLU PRO VAL PRO GLY ILE LYS ALA GLU SEQRES 3 B 152 PRO ASP GLU SER ASN ALA ARG TYR PHE HIS VAL VAL ILE SEQRES 4 B 152 ALA GLY PRO GLN ASP SER PRO PHE GLU GLY GLY THR PHE SEQRES 5 B 152 LYS LEU GLU LEU PHE LEU PRO GLU GLU TYR PRO MET ALA SEQRES 6 B 152 ALA PRO LYS VAL ARG PHE MET THR LYS ILE TYR HIS PRO SEQRES 7 B 152 ASN VAL ASP LYS LEU GLY ARG ILE CYS LEU ASP ILE LEU SEQRES 8 B 152 LYS ASP LYS TRP SER PRO ALA LEU GLN ILE ARG THR VAL SEQRES 9 B 152 LEU LEU SER ILE GLN ALA LEU LEU SER ALA PRO ASN PRO SEQRES 10 B 152 ASP ASP PRO LEU ALA ASN ASP VAL ALA GLU GLN TRP LYS SEQRES 11 B 152 THR ASN GLU ALA GLN ALA ILE GLU THR ALA ARG ALA TRP SEQRES 12 B 152 THR ARG LEU TYR ALA MET ASN ASN ILE FORMUL 3 HOH *442(H2 O) HELIX 1 AA1 PRO A 10 GLY A 25 1 16 HELIX 2 AA2 ASP A 99 SER A 102 5 4 HELIX 3 AA3 ILE A 103 LYS A 108 1 6 HELIX 4 AA4 SER A 114 MET A 126 1 13 HELIX 5 AA5 SER A 128 LYS A 133 1 6 HELIX 6 AA6 PRO B 5 GLU B 18 1 14 HELIX 7 AA7 LEU B 88 LYS B 92 5 5 HELIX 8 AA8 GLN B 100 ALA B 114 1 15 HELIX 9 AA9 ASN B 123 ASN B 132 1 10 HELIX 10 AB1 ASN B 132 ALA B 148 1 17 SHEET 1 AA1 4 VAL A 31 LEU A 35 0 SHEET 2 AA1 4 ARG A 45 ILE A 51 -1 O THR A 47 N GLY A 34 SHEET 3 AA1 4 ILE A 62 GLU A 68 -1 O VAL A 67 N TRP A 46 SHEET 4 AA1 4 SER A 79 PHE A 82 -1 O ARG A 81 N LYS A 66 SHEET 1 AA2 4 ILE B 23 ASP B 28 0 SHEET 2 AA2 4 ASN B 31 ALA B 40 -1 O TYR B 34 N ASP B 28 SHEET 3 AA2 4 THR B 51 PHE B 57 -1 O LEU B 56 N PHE B 35 SHEET 4 AA2 4 LYS B 68 PHE B 71 -1 O LYS B 68 N PHE B 57 CISPEP 1 TYR A 73 PRO A 74 0 1.39 CISPEP 2 TYR B 62 PRO B 63 0 3.86 CRYST1 86.361 42.942 93.790 90.00 108.37 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011579 0.000000 0.003846 0.00000 SCALE2 0.000000 0.023287 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011235 0.00000