HEADER HYDROLASE 26-APR-24 9BJY TITLE CRYSTAL STRUCTURE OF RIDA FAMILY PROTEIN PA5083 FROM PSEUDOMONAS TITLE 2 AERUGINOSA WITH TMAO BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIDA FAMILY PROTEIN; COMPND 3 CHAIN: B, A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: PA5083; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS RIDA PROTEIN, DEAMINATION, STRESS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.ZHOU,L.CHEN,J.P.ROSE,B.C.WANG REVDAT 1 04-SEP-24 9BJY 0 JRNL AUTH D.ZHOU,L.CHEN,J.P.ROSE,B.C.WANG JRNL TITL STRUCTURE OF THE RIDA PROTEIN PA5083 FROM PSEUDOMONAS JRNL TITL 2 AERUGINOSA WITH TMAO BOUND JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21_5207 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 40206 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 1997 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.6700 - 3.8100 0.91 2807 147 0.1922 0.2279 REMARK 3 2 3.8100 - 3.0200 0.88 2578 135 0.1653 0.1884 REMARK 3 3 3.0200 - 2.6400 0.88 2551 134 0.1737 0.2183 REMARK 3 4 2.6400 - 2.4000 0.89 2581 134 0.1681 0.1993 REMARK 3 5 2.4000 - 2.2300 0.91 2604 136 0.1552 0.1844 REMARK 3 6 2.2300 - 2.1000 0.94 2676 141 0.1600 0.1922 REMARK 3 7 2.1000 - 1.9900 0.96 2755 143 0.1627 0.1848 REMARK 3 8 1.9900 - 1.9000 0.98 2792 146 0.1724 0.1933 REMARK 3 9 1.9000 - 1.8300 0.99 2811 147 0.2010 0.2401 REMARK 3 10 1.8300 - 1.7700 0.99 2826 148 0.2122 0.2377 REMARK 3 11 1.7700 - 1.7100 0.99 2821 146 0.2047 0.2491 REMARK 3 12 1.7100 - 1.6600 0.99 2815 148 0.2229 0.2709 REMARK 3 13 1.6600 - 1.6200 0.99 2823 146 0.2284 0.2417 REMARK 3 14 1.6200 - 1.5800 0.98 2769 146 0.2453 0.2847 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.155 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.800 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.18 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1779 REMARK 3 ANGLE : 1.092 2426 REMARK 3 CHIRALITY : 0.059 293 REMARK 3 PLANARITY : 0.010 310 REMARK 3 DIHEDRAL : 13.426 641 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : chain "A" REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and resid 3 through 115) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9BJY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-APR-24. REMARK 100 THE DEPOSITION ID IS D_1000283503. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-002 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 200K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40206 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.580 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.45300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.130 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 5.5, 2.0 M AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 37.64000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 21.73146 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 93.16833 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 37.64000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 21.73146 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 93.16833 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 37.64000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 21.73146 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 93.16833 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 37.64000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 21.73146 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 93.16833 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 37.64000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 21.73146 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 93.16833 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 37.64000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 21.73146 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 93.16833 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 43.46293 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 186.33667 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 43.46293 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 186.33667 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 43.46293 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 186.33667 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 43.46293 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 186.33667 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 43.46293 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 186.33667 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 43.46293 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 186.33667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -89.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -93.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 37.64000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -65.19439 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 75.28000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 325 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 348 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 351 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 371 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 456 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 468 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 496 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 498 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 342 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 343 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 370 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 447 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 460 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 471 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 498 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 500 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 501 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 504 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 2 REMARK 465 GLY A 116 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH21 ARG A 102 O HOH A 306 1.45 REMARK 500 O HOH B 428 O HOH B 437 1.76 REMARK 500 O HOH A 310 O HOH A 318 1.82 REMARK 500 O HOH B 409 O HOH B 411 1.86 REMARK 500 O HOH A 366 O HOH A 453 1.87 REMARK 500 O HOH A 488 O HOH A 492 1.90 REMARK 500 O HOH B 394 O HOH B 449 1.90 REMARK 500 O HOH A 429 O HOH A 453 1.90 REMARK 500 O HOH A 400 O HOH A 453 1.91 REMARK 500 O HOH A 322 O HOH A 458 1.91 REMARK 500 O HOH B 444 O HOH B 447 1.92 REMARK 500 O HOH B 438 O HOH B 473 1.95 REMARK 500 O HOH B 441 O HOH B 469 1.96 REMARK 500 O HOH B 313 O HOH B 435 1.96 REMARK 500 O HOH A 364 O HOH A 440 1.98 REMARK 500 O HOH B 389 O HOH B 447 1.98 REMARK 500 O HOH A 432 O HOH A 451 1.99 REMARK 500 O HOH B 365 O HOH B 411 2.00 REMARK 500 O HOH B 394 O HOH B 404 2.01 REMARK 500 O HOH A 390 O HOH A 393 2.01 REMARK 500 O HOH A 470 O HOH A 489 2.02 REMARK 500 OE2 GLU B 33 O HOH B 301 2.03 REMARK 500 O HOH A 444 O HOH A 472 2.04 REMARK 500 O HOH B 393 O HOH B 466 2.04 REMARK 500 O HOH B 397 O HOH B 464 2.05 REMARK 500 OE1 GLU A 99 O HOH A 301 2.06 REMARK 500 O HOH B 377 O HOH B 379 2.07 REMARK 500 O HOH A 425 O HOH A 443 2.07 REMARK 500 O HOH B 346 O HOH B 421 2.08 REMARK 500 OD2 ASP A 19 O HOH A 302 2.08 REMARK 500 OE2 GLU A 99 O HOH A 303 2.09 REMARK 500 O HOH B 373 O HOH B 411 2.09 REMARK 500 O HOH B 444 O HOH B 459 2.10 REMARK 500 O HOH A 404 O HOH A 467 2.10 REMARK 500 O HOH B 436 O HOH B 450 2.10 REMARK 500 O HOH A 333 O HOH A 450 2.10 REMARK 500 OD1 ASP A 47 O HOH A 304 2.12 REMARK 500 O HOH A 462 O HOH A 480 2.12 REMARK 500 O HOH A 312 O HOH A 437 2.13 REMARK 500 O HOH A 439 O HOH A 481 2.13 REMARK 500 O HOH A 487 O HOH A 502 2.14 REMARK 500 O HOH A 302 O HOH A 465 2.14 REMARK 500 O HOH B 458 O HOH B 462 2.16 REMARK 500 O HOH A 328 O HOH A 350 2.17 REMARK 500 O HOH A 334 O HOH A 412 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 430 O HOH A 463 2545 1.83 REMARK 500 O HOH B 377 O HOH A 303 18555 1.85 REMARK 500 O HOH A 413 O HOH A 465 3655 1.94 REMARK 500 O HOH B 433 O HOH B 441 17555 1.95 REMARK 500 O HOH B 433 O HOH B 469 17555 1.98 REMARK 500 O HOH A 362 O HOH A 443 5556 2.04 REMARK 500 O HOH B 474 O HOH A 491 16545 2.08 REMARK 500 O HOH A 490 O HOH A 493 5556 2.14 REMARK 500 O HOH A 338 O HOH A 391 5556 2.14 REMARK 500 O HOH B 436 O HOH B 436 17555 2.14 REMARK 500 O HOH A 310 O HOH A 310 5556 2.14 REMARK 500 O HOH B 485 O HOH B 490 17555 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 7 75.04 53.64 REMARK 500 SER B 55 -163.75 -126.78 REMARK 500 ALA A 7 77.86 56.51 REMARK 500 ASP A 19 -122.71 48.91 REMARK 500 SER A 55 -167.75 -121.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 499 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A 503 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A 504 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH A 505 DISTANCE = 8.86 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9BJV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HYPOTHETICAL PROTEIN PA5083 FROM PSEUDOMONAS REMARK 900 AERUGINOSA SULFUR SAD PHASED REMARK 900 RELATED ID: 9BJW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RIDA FAMILY PROTEIN PA5083 FROM PSEUDOMONAS REMARK 900 AERUGINOSA REMARK 900 RELATED ID: 9BK4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RIDA FAMILY PROTEIN PA5083 FROM PSEUDOMONAS REMARK 900 AERUGINOSA WITH PYRUVIC ACID BOUND REMARK 900 RELATED ID: 9BK8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RIDA FAMILY PROTEIN PA5083 FROM PSEUDOMONAS REMARK 900 AERUGINOSA WITH 2-KETOBUTYRIC ACID BOUND DBREF 9BJY B 2 116 UNP Q9HUA0 Q9HUA0_PSEAE 2 116 DBREF 9BJY A 2 116 UNP Q9HUA0 Q9HUA0_PSEAE 2 116 SEQRES 1 B 115 GLU PRO THR ARG ILE ALA THR ASN ASP ARG LEU SER ALA SEQRES 2 B 115 ALA VAL CYS PHE ASP ALA LEU VAL PHE LEU SER GLY GLN SEQRES 3 B 115 VAL PRO GLY GLN ALA GLU ASP ILE HIS GLY GLN THR ARG SEQRES 4 B 115 GLU VAL LEU ALA LYS ILE ASP ALA LEU LEU ALA GLU ALA SEQRES 5 B 115 GLY SER ARG LYS GLU ARG ILE LEU SER ALA THR ILE TYR SEQRES 6 B 115 LEU LYS ASP ILE ALA ARG ASP PHE ALA ALA LEU ASN GLU SEQRES 7 B 115 VAL TRP THR GLN TRP LEU PRO THR GLY GLN ALA PRO SER SEQRES 8 B 115 ARG THR THR VAL GLN ALA GLU LEU ALA ARG PRO SER VAL SEQRES 9 B 115 LEU VAL GLU ILE THR VAL VAL ALA ALA ARG GLY SEQRES 1 A 115 GLU PRO THR ARG ILE ALA THR ASN ASP ARG LEU SER ALA SEQRES 2 A 115 ALA VAL CYS PHE ASP ALA LEU VAL PHE LEU SER GLY GLN SEQRES 3 A 115 VAL PRO GLY GLN ALA GLU ASP ILE HIS GLY GLN THR ARG SEQRES 4 A 115 GLU VAL LEU ALA LYS ILE ASP ALA LEU LEU ALA GLU ALA SEQRES 5 A 115 GLY SER ARG LYS GLU ARG ILE LEU SER ALA THR ILE TYR SEQRES 6 A 115 LEU LYS ASP ILE ALA ARG ASP PHE ALA ALA LEU ASN GLU SEQRES 7 A 115 VAL TRP THR GLN TRP LEU PRO THR GLY GLN ALA PRO SER SEQRES 8 A 115 ARG THR THR VAL GLN ALA GLU LEU ALA ARG PRO SER VAL SEQRES 9 A 115 LEU VAL GLU ILE THR VAL VAL ALA ALA ARG GLY HET SO4 B 201 5 HET TMO B 202 14 HET SO4 A 201 5 HET TMO A 202 14 HETNAM SO4 SULFATE ION HETNAM TMO TRIMETHYLAMINE OXIDE FORMUL 3 SO4 2(O4 S 2-) FORMUL 4 TMO 2(C3 H9 N O) FORMUL 7 HOH *404(H2 O) HELIX 1 AA1 ASP B 34 ALA B 53 1 20 HELIX 2 AA2 ARG B 56 GLU B 58 5 3 HELIX 3 AA3 ASP B 69 LEU B 85 1 17 HELIX 4 AA4 ASP A 34 ALA A 53 1 20 HELIX 5 AA5 ARG A 56 GLU A 58 5 3 HELIX 6 AA6 ASP A 69 LEU A 85 1 17 SHEET 1 AA1 6 THR B 4 THR B 8 0 SHEET 2 AA1 6 SER B 13 PHE B 18 -1 O CYS B 17 N THR B 4 SHEET 3 AA1 6 LEU B 21 LEU B 24 -1 O PHE B 23 N VAL B 16 SHEET 4 AA1 6 VAL B 107 ALA B 114 -1 O ALA B 113 N VAL B 22 SHEET 5 AA1 6 ILE B 60 LEU B 67 -1 N TYR B 66 O GLU B 108 SHEET 6 AA1 6 SER B 92 GLN B 97 1 O THR B 94 N ILE B 65 SHEET 1 AA2 6 THR A 4 THR A 8 0 SHEET 2 AA2 6 SER A 13 PHE A 18 -1 O CYS A 17 N THR A 4 SHEET 3 AA2 6 LEU A 21 LEU A 24 -1 O PHE A 23 N VAL A 16 SHEET 4 AA2 6 VAL A 107 ALA A 114 -1 O ALA A 113 N VAL A 22 SHEET 5 AA2 6 ILE A 60 LEU A 67 -1 N TYR A 66 O GLU A 108 SHEET 6 AA2 6 SER A 92 GLN A 97 1 O THR A 94 N ILE A 65 CRYST1 75.280 75.280 279.505 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013284 0.007669 0.000000 0.00000 SCALE2 0.000000 0.015339 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003578 0.00000 MTRIX1 1 0.992982 0.118260 -0.001438 -34.52175 1 MTRIX2 1 -0.118255 0.992979 0.002912 25.65168 1 MTRIX3 1 0.001772 -0.002722 0.999995 -46.09388 1