HEADER OXIDOREDUCTASE 21-MAY-24 9BWR TITLE X-RAY COUNTERPART TO THE NEUTRON STRUCTURE OF REDUCED TYR34PHE MNSOD COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPEROXIDE DISMUTASE [MN], MITOCHONDRIAL; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.15.1.1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SOD2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OXIDOREDUCTASE, MNSOD, SOD2, PCET EXPDTA X-RAY DIFFRACTION AUTHOR J.AZADMANESH,K.SLOBODNIK,L.R.STRUBLE,E.A.CONE,M.DASGUPTA,W.E.LUTZ, AUTHOR 2 S.KUMAR,A.NATARAJAN,L.COATES,K.L.WEISS,D.A.A.MYLES,T.KROLL, AUTHOR 3 G.E.O.BORGSTAHL REVDAT 1 12-MAR-25 9BWR 0 JRNL AUTH J.AZADMANESH,K.SLOBODNIK,L.R.STRUBLE,J.J.LOVELACE,E.A.CONE, JRNL AUTH 2 M.DASGUPTA,W.E.LUTZ,S.KUMAR,A.NATARAJAN,L.COATES,K.L.WEISS, JRNL AUTH 3 D.A.A.MYLES,T.KROLL,G.E.O.BORGSTAHL JRNL TITL THE ROLE OF TYR34 IN PROTON COUPLED ELECTRON TRANSFER AND JRNL TITL 2 PRODUCT INHIBITION OF MANGANESE SUPEROXIDE DISMUTASE. JRNL REF NAT COMMUN V. 16 1887 2025 JRNL REFN ESSN 2041-1723 JRNL PMID 39987263 JRNL DOI 10.1038/S41467-025-57180-3 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 82.9 REMARK 3 NUMBER OF REFLECTIONS : 56759 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.520 REMARK 3 FREE R VALUE TEST SET COUNT : 3751 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.0500 - 4.5000 0.96 4398 164 0.1851 0.1851 REMARK 3 2 4.5000 - 3.5700 0.94 4298 161 0.1537 0.1714 REMARK 3 3 3.5700 - 3.1200 0.97 4455 157 0.1606 0.1830 REMARK 3 4 3.1200 - 2.8300 0.99 4544 168 0.1831 0.2044 REMARK 3 5 2.8300 - 2.6300 0.99 4518 165 0.1884 0.1934 REMARK 3 6 2.6300 - 2.4800 0.99 4560 166 0.1803 0.1765 REMARK 3 7 2.4800 - 2.3500 0.99 4508 169 0.1771 0.2038 REMARK 3 8 2.3500 - 2.2500 0.98 4522 163 0.1714 0.1906 REMARK 3 9 2.2500 - 2.1600 0.98 4495 159 0.1743 0.2101 REMARK 3 10 2.1600 - 2.0900 0.97 4452 162 0.1756 0.2178 REMARK 3 11 2.0900 - 2.0200 0.96 4431 162 0.1851 0.2432 REMARK 3 12 2.0200 - 1.9700 0.96 4392 155 0.1933 0.2056 REMARK 3 13 1.9700 - 1.9100 0.95 4354 161 0.2147 0.2224 REMARK 3 14 1.9100 - 1.8700 0.94 4323 156 0.2071 0.2494 REMARK 3 15 1.8700 - 1.8200 0.93 4251 156 0.2166 0.2427 REMARK 3 16 1.8200 - 1.7900 0.92 4212 155 0.2224 0.2419 REMARK 3 17 1.7900 - 1.7500 0.89 4087 155 0.2230 0.2571 REMARK 3 18 1.7500 - 1.7200 0.86 3938 138 0.2304 0.2934 REMARK 3 19 1.7200 - 1.6900 0.82 3761 139 0.2341 0.2436 REMARK 3 20 1.6900 - 1.6600 0.78 3565 133 0.2357 0.2594 REMARK 3 21 1.6600 - 1.6300 0.72 3288 119 0.2422 0.2941 REMARK 3 22 1.6300 - 1.6100 0.66 3034 111 0.2382 0.2575 REMARK 3 23 1.6100 - 1.5800 0.59 2705 99 0.2397 0.2577 REMARK 3 24 1.5800 - 1.5600 0.53 2427 88 0.2514 0.2573 REMARK 3 25 1.5600 - 1.5400 0.47 2135 79 0.2599 0.2955 REMARK 3 26 1.5400 - 1.5200 0.40 1819 67 0.2565 0.3220 REMARK 3 27 1.5200 - 1.5000 0.27 1256 44 0.3048 0.2847 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.151 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.095 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.25 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3260 REMARK 3 ANGLE : 0.639 4426 REMARK 3 CHIRALITY : 0.067 454 REMARK 3 PLANARITY : 0.005 576 REMARK 3 DIHEDRAL : 11.897 1170 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 0 THROUGH 198) REMARK 3 ORIGIN FOR THE GROUP (A): 49.8618 31.6914 91.2463 REMARK 3 T TENSOR REMARK 3 T11: 0.0455 T22: 0.0618 REMARK 3 T33: 0.0311 T12: -0.0095 REMARK 3 T13: 0.0002 T23: 0.0077 REMARK 3 L TENSOR REMARK 3 L11: 0.9240 L22: 0.8186 REMARK 3 L33: 0.6402 L12: -0.0754 REMARK 3 L13: 0.1006 L23: 0.2211 REMARK 3 S TENSOR REMARK 3 S11: -0.0025 S12: -0.0061 S13: -0.0226 REMARK 3 S21: 0.0083 S22: -0.0125 S23: 0.0243 REMARK 3 S31: -0.0512 S32: 0.0064 S33: 0.0015 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 0 THROUGH 198) REMARK 3 ORIGIN FOR THE GROUP (A): 11.5481 25.1706 88.4108 REMARK 3 T TENSOR REMARK 3 T11: 0.0678 T22: 0.1146 REMARK 3 T33: 0.0928 T12: 0.0087 REMARK 3 T13: -0.0309 T23: -0.0562 REMARK 3 L TENSOR REMARK 3 L11: 0.7153 L22: 0.4386 REMARK 3 L33: 0.3698 L12: -0.0829 REMARK 3 L13: -0.0208 L23: -0.2573 REMARK 3 S TENSOR REMARK 3 S11: -0.0002 S12: 0.0436 S13: -0.0760 REMARK 3 S21: 0.0203 S22: 0.0166 S23: -0.0358 REMARK 3 S31: 0.0525 S32: 0.0098 S33: -0.0176 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : chain "A" REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : chain "B" REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9BWR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAY-24. REMARK 100 THE DEPOSITION ID IS D_1000284293. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAY-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65175 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M POTASSIUM PHOSPHATE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.39600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 156.79200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 117.59400 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 195.99000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.19800 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 78.39600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 156.79200 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 195.99000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 117.59400 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 39.19800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -70.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 39.04300 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 67.62446 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 195.99000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 358 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 467 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 549 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 680 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 689 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 331 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 656 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 437 O HOH A 499 1.82 REMARK 500 O HOH A 532 O HOH A 621 1.83 REMARK 500 O HOH B 556 O HOH B 591 1.83 REMARK 500 O HOH B 666 O HOH B 687 1.90 REMARK 500 O HOH A 325 O HOH B 560 1.91 REMARK 500 O HOH B 525 O HOH B 667 1.93 REMARK 500 O HOH A 601 O HOH A 648 1.95 REMARK 500 O HOH A 559 O HOH B 575 1.96 REMARK 500 O HOH A 560 O HOH A 574 1.98 REMARK 500 O HOH B 671 O HOH B 675 2.00 REMARK 500 O HOH B 469 O HOH B 597 2.01 REMARK 500 O HOH A 511 O HOH A 647 2.01 REMARK 500 O HOH A 572 O HOH A 630 2.02 REMARK 500 OD2 ASP B 10 O HOH B 301 2.03 REMARK 500 O HOH A 495 O HOH A 505 2.03 REMARK 500 O HOH A 322 O HOH A 329 2.03 REMARK 500 O HOH B 566 O HOH B 579 2.04 REMARK 500 O HOH B 603 O HOH B 610 2.04 REMARK 500 O HOH B 615 O HOH B 657 2.04 REMARK 500 O HOH A 547 O HOH A 630 2.04 REMARK 500 O HOH B 644 O HOH B 685 2.05 REMARK 500 O HOH A 359 O HOH A 624 2.05 REMARK 500 O HOH A 395 O HOH A 497 2.06 REMARK 500 O LEU B 49 O HOH B 302 2.06 REMARK 500 O HOH A 502 O HOH A 534 2.06 REMARK 500 O HOH A 503 O HOH A 625 2.07 REMARK 500 O HOH B 393 O HOH B 616 2.08 REMARK 500 O HOH B 469 O HOH B 537 2.09 REMARK 500 O HOH A 596 O HOH A 609 2.09 REMARK 500 O HOH B 422 O HOH B 455 2.10 REMARK 500 O HOH A 504 O HOH A 624 2.10 REMARK 500 O HOH B 588 O HOH B 617 2.11 REMARK 500 OE2 GLU B 109 O HOH B 303 2.11 REMARK 500 O HOH B 389 O HOH B 605 2.11 REMARK 500 O HOH A 518 O HOH A 651 2.12 REMARK 500 O HOH B 310 O HOH B 345 2.12 REMARK 500 O HOH B 521 O HOH B 595 2.12 REMARK 500 O HOH B 527 O HOH B 654 2.12 REMARK 500 OE2 GLU A 131 O HOH A 301 2.13 REMARK 500 O HOH A 383 O HOH A 595 2.14 REMARK 500 O HOH A 658 O HOH A 674 2.14 REMARK 500 O HOH B 596 O HOH B 641 2.14 REMARK 500 O HOH B 480 O HOH B 592 2.15 REMARK 500 OE1 GLU B 95 O HOH B 304 2.15 REMARK 500 O HOH B 359 O HOH B 519 2.15 REMARK 500 O HOH A 380 O HOH A 545 2.16 REMARK 500 O HOH B 540 O HOH B 543 2.16 REMARK 500 O HOH B 494 O HOH B 610 2.17 REMARK 500 OD1 ASP A 175 O HOH A 302 2.17 REMARK 500 O HOH A 392 O HOH A 413 2.18 REMARK 500 REMARK 500 THIS ENTRY HAS 55 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 596 O HOH B 660 10665 1.77 REMARK 500 O HOH A 537 O HOH B 506 10665 1.85 REMARK 500 O HOH A 520 O HOH A 527 10665 1.88 REMARK 500 O HOH A 614 O HOH B 625 6655 1.92 REMARK 500 O HOH A 455 O HOH B 557 1655 1.98 REMARK 500 O HOH A 321 O HOH B 327 9655 2.01 REMARK 500 O HOH A 544 O HOH B 576 1655 2.13 REMARK 500 O HOH A 323 O HOH A 448 9765 2.16 REMARK 500 O HOH A 522 O HOH B 327 9655 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 142 -120.98 52.84 REMARK 500 TYR A 165 -13.72 -148.77 REMARK 500 LYS A 170 -135.31 56.95 REMARK 500 LYS B 1 96.46 65.50 REMARK 500 ASN B 142 -121.61 52.71 REMARK 500 TYR B 165 -13.98 -148.84 REMARK 500 LYS B 170 -134.91 56.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 676 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A 677 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH A 678 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH A 679 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH A 680 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH A 681 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH A 682 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH A 683 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH A 684 DISTANCE = 6.52 ANGSTROMS REMARK 525 HOH A 685 DISTANCE = 6.67 ANGSTROMS REMARK 525 HOH A 686 DISTANCE = 6.80 ANGSTROMS REMARK 525 HOH A 687 DISTANCE = 7.05 ANGSTROMS REMARK 525 HOH A 688 DISTANCE = 7.53 ANGSTROMS REMARK 525 HOH A 689 DISTANCE = 7.54 ANGSTROMS REMARK 525 HOH A 690 DISTANCE = 7.81 ANGSTROMS REMARK 525 HOH A 691 DISTANCE = 8.15 ANGSTROMS REMARK 525 HOH A 692 DISTANCE = 10.41 ANGSTROMS REMARK 525 HOH A 693 DISTANCE = 11.08 ANGSTROMS REMARK 525 HOH A 694 DISTANCE = 12.07 ANGSTROMS REMARK 525 HOH B 681 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH B 682 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH B 683 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH B 684 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH B 685 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH B 686 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH B 687 DISTANCE = 6.60 ANGSTROMS REMARK 525 HOH B 688 DISTANCE = 6.77 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 203 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 12 O REMARK 620 2 HOH A 374 O 94.0 REMARK 620 3 HOH A 484 O 76.7 58.8 REMARK 620 4 GLY B 85 O 13.5 92.2 64.6 REMARK 620 5 ASN B 182 O 11.4 91.6 66.1 2.3 REMARK 620 6 HOH B 351 O 73.2 140.1 81.3 66.7 68.5 REMARK 620 7 HOH B 353 O 61.3 84.7 121.8 74.3 72.0 118.3 REMARK 620 8 HOH B 504 O 89.0 144.3 154.7 98.2 97.4 74.6 65.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 26 NE2 REMARK 620 2 HIS A 74 NE2 89.3 REMARK 620 3 ASP A 159 OD2 86.6 110.5 REMARK 620 4 HIS A 163 NE2 93.0 126.9 122.6 REMARK 620 5 HOH A 406 O 174.4 92.0 87.9 90.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 26 NE2 REMARK 620 2 HIS B 74 NE2 87.8 REMARK 620 3 ASP B 159 OD2 86.5 110.2 REMARK 620 4 HIS B 163 NE2 92.3 126.6 123.1 REMARK 620 5 HOH B 406 O 174.9 94.8 88.5 89.7 REMARK 620 N 1 2 3 4 DBREF 9BWR A 1 198 UNP P04179 SODM_HUMAN 25 222 DBREF 9BWR B 1 198 UNP P04179 SODM_HUMAN 25 222 SEQADV 9BWR MET A 0 UNP P04179 INITIATING METHIONINE SEQADV 9BWR PHE A 34 UNP P04179 TYR 58 ENGINEERED MUTATION SEQADV 9BWR MET B 0 UNP P04179 INITIATING METHIONINE SEQADV 9BWR PHE B 34 UNP P04179 TYR 58 ENGINEERED MUTATION SEQRES 1 A 199 MET LYS HIS SER LEU PRO ASP LEU PRO TYR ASP TYR GLY SEQRES 2 A 199 ALA LEU GLU PRO HIS ILE ASN ALA GLN ILE MET GLN LEU SEQRES 3 A 199 HIS HIS SER LYS HIS HIS ALA ALA PHE VAL ASN ASN LEU SEQRES 4 A 199 ASN VAL THR GLU GLU LYS TYR GLN GLU ALA LEU ALA LYS SEQRES 5 A 199 GLY ASP VAL THR ALA GLN ILE ALA LEU GLN PRO ALA LEU SEQRES 6 A 199 LYS PHE ASN GLY GLY GLY HIS ILE ASN HIS SER ILE PHE SEQRES 7 A 199 TRP THR ASN LEU SER PRO ASN GLY GLY GLY GLU PRO LYS SEQRES 8 A 199 GLY GLU LEU LEU GLU ALA ILE LYS ARG ASP PHE GLY SER SEQRES 9 A 199 PHE ASP LYS PHE LYS GLU LYS LEU THR ALA ALA SER VAL SEQRES 10 A 199 GLY VAL GLN GLY SER GLY TRP GLY TRP LEU GLY PHE ASN SEQRES 11 A 199 LYS GLU ARG GLY HIS LEU GLN ILE ALA ALA CYS PRO ASN SEQRES 12 A 199 GLN ASP PRO LEU GLN GLY THR THR GLY LEU ILE PRO LEU SEQRES 13 A 199 LEU GLY ILE ASP VAL TRP GLU HIS ALA TYR TYR LEU GLN SEQRES 14 A 199 TYR LYS ASN VAL ARG PRO ASP TYR LEU LYS ALA ILE TRP SEQRES 15 A 199 ASN VAL ILE ASN TRP GLU ASN VAL THR GLU ARG TYR MET SEQRES 16 A 199 ALA CYS LYS LYS SEQRES 1 B 199 MET LYS HIS SER LEU PRO ASP LEU PRO TYR ASP TYR GLY SEQRES 2 B 199 ALA LEU GLU PRO HIS ILE ASN ALA GLN ILE MET GLN LEU SEQRES 3 B 199 HIS HIS SER LYS HIS HIS ALA ALA PHE VAL ASN ASN LEU SEQRES 4 B 199 ASN VAL THR GLU GLU LYS TYR GLN GLU ALA LEU ALA LYS SEQRES 5 B 199 GLY ASP VAL THR ALA GLN ILE ALA LEU GLN PRO ALA LEU SEQRES 6 B 199 LYS PHE ASN GLY GLY GLY HIS ILE ASN HIS SER ILE PHE SEQRES 7 B 199 TRP THR ASN LEU SER PRO ASN GLY GLY GLY GLU PRO LYS SEQRES 8 B 199 GLY GLU LEU LEU GLU ALA ILE LYS ARG ASP PHE GLY SER SEQRES 9 B 199 PHE ASP LYS PHE LYS GLU LYS LEU THR ALA ALA SER VAL SEQRES 10 B 199 GLY VAL GLN GLY SER GLY TRP GLY TRP LEU GLY PHE ASN SEQRES 11 B 199 LYS GLU ARG GLY HIS LEU GLN ILE ALA ALA CYS PRO ASN SEQRES 12 B 199 GLN ASP PRO LEU GLN GLY THR THR GLY LEU ILE PRO LEU SEQRES 13 B 199 LEU GLY ILE ASP VAL TRP GLU HIS ALA TYR TYR LEU GLN SEQRES 14 B 199 TYR LYS ASN VAL ARG PRO ASP TYR LEU LYS ALA ILE TRP SEQRES 15 B 199 ASN VAL ILE ASN TRP GLU ASN VAL THR GLU ARG TYR MET SEQRES 16 B 199 ALA CYS LYS LYS HET MN A 201 1 HET PO4 A 202 5 HET K A 203 1 HET MN B 201 1 HET PO4 B 202 5 HETNAM MN MANGANESE (II) ION HETNAM PO4 PHOSPHATE ION HETNAM K POTASSIUM ION FORMUL 3 MN 2(MN 2+) FORMUL 4 PO4 2(O4 P 3-) FORMUL 5 K K 1+ FORMUL 8 HOH *782(H2 O) HELIX 1 AA1 ASN A 19 LYS A 29 1 11 HELIX 2 AA2 LYS A 29 GLY A 52 1 24 HELIX 3 AA3 ASP A 53 LEU A 81 1 29 HELIX 4 AA4 LYS A 90 GLY A 102 1 13 HELIX 5 AA5 SER A 103 VAL A 118 1 16 HELIX 6 AA6 PRO A 145 GLY A 151 1 7 HELIX 7 AA7 TRP A 161 ALA A 164 5 4 HELIX 8 AA8 TYR A 165 LYS A 170 1 6 HELIX 9 AA9 VAL A 172 TRP A 181 1 10 HELIX 10 AB1 ASN A 182 ILE A 184 5 3 HELIX 11 AB2 ASN A 185 LYS A 197 1 13 HELIX 12 AB3 ASN B 19 LYS B 29 1 11 HELIX 13 AB4 LYS B 29 GLY B 52 1 24 HELIX 14 AB5 ASP B 53 ASN B 80 1 28 HELIX 15 AB6 LYS B 90 GLY B 102 1 13 HELIX 16 AB7 SER B 103 GLY B 117 1 15 HELIX 17 AB8 PRO B 145 GLY B 151 1 7 HELIX 18 AB9 TRP B 161 ALA B 164 5 4 HELIX 19 AC1 TYR B 165 LYS B 170 1 6 HELIX 20 AC2 VAL B 172 TRP B 181 1 10 HELIX 21 AC3 ASN B 182 ILE B 184 5 3 HELIX 22 AC4 ASN B 185 LYS B 197 1 13 SHEET 1 AA1 3 HIS A 134 PRO A 141 0 SHEET 2 AA1 3 GLY A 122 ASN A 129 -1 N GLY A 127 O GLN A 136 SHEET 3 AA1 3 ILE A 153 ASP A 159 -1 O ILE A 158 N GLY A 124 SHEET 1 AA2 3 HIS B 134 PRO B 141 0 SHEET 2 AA2 3 GLY B 122 ASN B 129 -1 N GLY B 127 O GLN B 136 SHEET 3 AA2 3 ILE B 153 ASP B 159 -1 O ILE B 158 N GLY B 124 LINK O GLY A 12 K K A 203 1555 1555 2.96 LINK NE2 HIS A 26 MN MN A 201 1555 1555 2.18 LINK NE2 HIS A 74 MN MN A 201 1555 1555 2.21 LINK OD2 ASP A 159 MN MN A 201 1555 1555 1.99 LINK NE2 HIS A 163 MN MN A 201 1555 1555 2.19 LINK MN MN A 201 O HOH A 406 1555 1555 2.08 LINK K K A 203 O HOH A 374 1555 1555 3.07 LINK K K A 203 O HOH A 484 1555 1555 2.88 LINK K K A 203 O GLY B 85 1455 1555 2.97 LINK K K A 203 O ASN B 182 1455 1555 2.72 LINK K K A 203 O HOH B 351 1555 1655 2.87 LINK K K A 203 O HOH B 353 1555 1655 2.99 LINK K K A 203 O HOH B 504 1555 1655 2.60 LINK NE2 HIS B 26 MN MN B 201 1555 1555 2.16 LINK NE2 HIS B 74 MN MN B 201 1555 1555 2.24 LINK OD2 ASP B 159 MN MN B 201 1555 1555 1.98 LINK NE2 HIS B 163 MN MN B 201 1555 1555 2.20 LINK MN MN B 201 O HOH B 406 1555 1555 2.16 CISPEP 1 GLU A 15 PRO A 16 0 3.57 CISPEP 2 GLU B 15 PRO B 16 0 2.75 CRYST1 78.086 78.086 235.188 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012806 0.007394 0.000000 0.00000 SCALE2 0.000000 0.014788 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004252 0.00000 MTRIX1 1 -0.992486 0.016690 -0.121218 71.56639 1 MTRIX2 1 0.007875 -0.979888 -0.199393 74.02374 1 MTRIX3 1 -0.122108 -0.198849 0.972393 12.07503 1 CONECT 107 3169 CONECT 219 3163 CONECT 588 3163 CONECT 1230 3163 CONECT 1270 3163 CONECT 1800 3170 CONECT 2169 3170 CONECT 2811 3170 CONECT 2851 3170 CONECT 3163 219 588 1230 1270 CONECT 3163 3281 CONECT 3164 3165 3166 3167 3168 CONECT 3165 3164 CONECT 3166 3164 CONECT 3167 3164 CONECT 3168 3164 CONECT 3169 107 3249 3359 CONECT 3170 1800 2169 2811 2851 CONECT 3170 3675 CONECT 3171 3172 3173 3174 3175 CONECT 3172 3171 CONECT 3173 3171 CONECT 3174 3171 CONECT 3175 3171 CONECT 3249 3169 CONECT 3281 3163 CONECT 3359 3169 CONECT 3675 3170 MASTER 496 0 5 22 6 0 0 9 3955 2 28 32 END