data_9BXQ # _entry.id 9BXQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.395 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9BXQ pdb_00009bxq 10.2210/pdb9bxq/pdb WWPDB D_1000284347 ? ? EMDB EMD-45008 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2024-08-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _database_PDB_caveat.id _database_PDB_caveat.text 1 'Atom OXT of GLU 380 in chains C, D, E, and F is 0.74 A or less from atom HB2 of GLU 380 of chains E, F, G, and H, respectively.' 2 ;Atom OE1 of GLU 338 in chains C, D, E, F, and G is 0.80 A or less from atom HZ1 of LYS 331 of chains D, E, F, G, and H, respectively. ; # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9BXQ _pdbx_database_status.recvd_initial_deposition_date 2024-05-22 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type EMDB . EMD-45005 'consensus EM volume' EMDB . EMD-45007 'consensus EM volume' EMDB 'Paired Helical Filaments purified from Down Syndrome individual brain tissue applied to graphene oxide antibody affinity grids' EMD-45008 'associated EM volume' # loop_ _pdbx_contact_author.id _pdbx_contact_author.email _pdbx_contact_author.name_first _pdbx_contact_author.name_last _pdbx_contact_author.name_mi _pdbx_contact_author.role _pdbx_contact_author.identifier_ORCID 3 carlo.condello@ucsf.edu Carlo Condello ? 'principal investigator/group leader' 0000-0002-8454-5360 4 Daniel.Southworth@ucsf.edu Daniel Southworth ? 'principal investigator/group leader' 0000-0001-7108-9389 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Tse, E.' 1 0000-0002-2082-9006 'Ghosh, U.' 2 0000-0001-7818-4792 'Condello, C.' 3 0000-0002-8454-5360 'Southworth, D.' 4 0000-0001-7108-9389 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Acta Neuropathol Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2051-5960 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 12 _citation.language ? _citation.page_first 94 _citation.page_last 94 _citation.title ;Cryo-EM structures reveal tau filaments from Down syndrome adopt Alzheimer's disease fold. ; _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1186/s40478-024-01806-y _citation.pdbx_database_id_PubMed 38867338 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ghosh, U.' 1 ? primary 'Tse, E.' 2 ? primary 'Yang, H.' 3 ? primary 'Shi, M.' 4 ? primary 'Caro, C.D.' 5 ? primary 'Wang, F.' 6 ? primary 'Merz, G.E.' 7 ? primary 'Prusiner, S.B.' 8 ? primary 'Southworth, D.R.' 9 ? primary 'Condello, C.' 10 0000-0002-8454-5360 # _entity.id 1 _entity.type polymer _entity.src_method nat _entity.pdbx_description 'Microtubule-associated protein tau' _entity.formula_weight 8370.578 _entity.pdbx_number_of_molecules 6 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Neurofibrillary tangle protein,Paired helical filament-tau,PHF-tau' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GSVQIVYKPVDLSKVTSKCGSLGNIHHKPGGGQVEVKSEKLDFKDRVQSKIGSLDNITHVPGGGNKKIETHKLTFRE _entity_poly.pdbx_seq_one_letter_code_can GSVQIVYKPVDLSKVTSKCGSLGNIHHKPGGGQVEVKSEKLDFKDRVQSKIGSLDNITHVPGGGNKKIETHKLTFRE _entity_poly.pdbx_strand_id C,D,E,F,G,H _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 VAL n 1 4 GLN n 1 5 ILE n 1 6 VAL n 1 7 TYR n 1 8 LYS n 1 9 PRO n 1 10 VAL n 1 11 ASP n 1 12 LEU n 1 13 SER n 1 14 LYS n 1 15 VAL n 1 16 THR n 1 17 SER n 1 18 LYS n 1 19 CYS n 1 20 GLY n 1 21 SER n 1 22 LEU n 1 23 GLY n 1 24 ASN n 1 25 ILE n 1 26 HIS n 1 27 HIS n 1 28 LYS n 1 29 PRO n 1 30 GLY n 1 31 GLY n 1 32 GLY n 1 33 GLN n 1 34 VAL n 1 35 GLU n 1 36 VAL n 1 37 LYS n 1 38 SER n 1 39 GLU n 1 40 LYS n 1 41 LEU n 1 42 ASP n 1 43 PHE n 1 44 LYS n 1 45 ASP n 1 46 ARG n 1 47 VAL n 1 48 GLN n 1 49 SER n 1 50 LYS n 1 51 ILE n 1 52 GLY n 1 53 SER n 1 54 LEU n 1 55 ASP n 1 56 ASN n 1 57 ILE n 1 58 THR n 1 59 HIS n 1 60 VAL n 1 61 PRO n 1 62 GLY n 1 63 GLY n 1 64 GLY n 1 65 ASN n 1 66 LYS n 1 67 LYS n 1 68 ILE n 1 69 GLU n 1 70 THR n 1 71 HIS n 1 72 LYS n 1 73 LEU n 1 74 THR n 1 75 PHE n 1 76 ARG n 1 77 GLU n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 77 _entity_src_nat.common_name human _entity_src_nat.pdbx_organism_scientific 'Homo sapiens' _entity_src_nat.pdbx_ncbi_taxonomy_id 9606 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 304 304 GLY GLY C . n A 1 2 SER 2 305 305 SER SER C . n A 1 3 VAL 3 306 306 VAL VAL C . n A 1 4 GLN 4 307 307 GLN GLN C . n A 1 5 ILE 5 308 308 ILE ILE C . n A 1 6 VAL 6 309 309 VAL VAL C . n A 1 7 TYR 7 310 310 TYR TYR C . n A 1 8 LYS 8 311 311 LYS LYS C . n A 1 9 PRO 9 312 312 PRO PRO C . n A 1 10 VAL 10 313 313 VAL VAL C . n A 1 11 ASP 11 314 314 ASP ASP C . n A 1 12 LEU 12 315 315 LEU LEU C . n A 1 13 SER 13 316 316 SER SER C . n A 1 14 LYS 14 317 317 LYS LYS C . n A 1 15 VAL 15 318 318 VAL VAL C . n A 1 16 THR 16 319 319 THR THR C . n A 1 17 SER 17 320 320 SER SER C . n A 1 18 LYS 18 321 321 LYS LYS C . n A 1 19 CYS 19 322 322 CYS CYS C . n A 1 20 GLY 20 323 323 GLY GLY C . n A 1 21 SER 21 324 324 SER SER C . n A 1 22 LEU 22 325 325 LEU LEU C . n A 1 23 GLY 23 326 326 GLY GLY C . n A 1 24 ASN 24 327 327 ASN ASN C . n A 1 25 ILE 25 328 328 ILE ILE C . n A 1 26 HIS 26 329 329 HIS HIS C . n A 1 27 HIS 27 330 330 HIS HIS C . n A 1 28 LYS 28 331 331 LYS LYS C . n A 1 29 PRO 29 332 332 PRO PRO C . n A 1 30 GLY 30 333 333 GLY GLY C . n A 1 31 GLY 31 334 334 GLY GLY C . n A 1 32 GLY 32 335 335 GLY GLY C . n A 1 33 GLN 33 336 336 GLN GLN C . n A 1 34 VAL 34 337 337 VAL VAL C . n A 1 35 GLU 35 338 338 GLU GLU C . n A 1 36 VAL 36 339 339 VAL VAL C . n A 1 37 LYS 37 340 340 LYS LYS C . n A 1 38 SER 38 341 341 SER SER C . n A 1 39 GLU 39 342 342 GLU GLU C . n A 1 40 LYS 40 343 343 LYS LYS C . n A 1 41 LEU 41 344 344 LEU LEU C . n A 1 42 ASP 42 345 345 ASP ASP C . n A 1 43 PHE 43 346 346 PHE PHE C . n A 1 44 LYS 44 347 347 LYS LYS C . n A 1 45 ASP 45 348 348 ASP ASP C . n A 1 46 ARG 46 349 349 ARG ARG C . n A 1 47 VAL 47 350 350 VAL VAL C . n A 1 48 GLN 48 351 351 GLN GLN C . n A 1 49 SER 49 352 352 SER SER C . n A 1 50 LYS 50 353 353 LYS LYS C . n A 1 51 ILE 51 354 354 ILE ILE C . n A 1 52 GLY 52 355 355 GLY GLY C . n A 1 53 SER 53 356 356 SER SER C . n A 1 54 LEU 54 357 357 LEU LEU C . n A 1 55 ASP 55 358 358 ASP ASP C . n A 1 56 ASN 56 359 359 ASN ASN C . n A 1 57 ILE 57 360 360 ILE ILE C . n A 1 58 THR 58 361 361 THR THR C . n A 1 59 HIS 59 362 362 HIS HIS C . n A 1 60 VAL 60 363 363 VAL VAL C . n A 1 61 PRO 61 364 364 PRO PRO C . n A 1 62 GLY 62 365 365 GLY GLY C . n A 1 63 GLY 63 366 366 GLY GLY C . n A 1 64 GLY 64 367 367 GLY GLY C . n A 1 65 ASN 65 368 368 ASN ASN C . n A 1 66 LYS 66 369 369 LYS LYS C . n A 1 67 LYS 67 370 370 LYS LYS C . n A 1 68 ILE 68 371 371 ILE ILE C . n A 1 69 GLU 69 372 372 GLU GLU C . n A 1 70 THR 70 373 373 THR THR C . n A 1 71 HIS 71 374 374 HIS HIS C . n A 1 72 LYS 72 375 375 LYS LYS C . n A 1 73 LEU 73 376 376 LEU LEU C . n A 1 74 THR 74 377 377 THR THR C . n A 1 75 PHE 75 378 378 PHE PHE C . n A 1 76 ARG 76 379 379 ARG ARG C . n A 1 77 GLU 77 380 380 GLU GLU C . n B 1 1 GLY 1 304 304 GLY GLY D . n B 1 2 SER 2 305 305 SER SER D . n B 1 3 VAL 3 306 306 VAL VAL D . n B 1 4 GLN 4 307 307 GLN GLN D . n B 1 5 ILE 5 308 308 ILE ILE D . n B 1 6 VAL 6 309 309 VAL VAL D . n B 1 7 TYR 7 310 310 TYR TYR D . n B 1 8 LYS 8 311 311 LYS LYS D . n B 1 9 PRO 9 312 312 PRO PRO D . n B 1 10 VAL 10 313 313 VAL VAL D . n B 1 11 ASP 11 314 314 ASP ASP D . n B 1 12 LEU 12 315 315 LEU LEU D . n B 1 13 SER 13 316 316 SER SER D . n B 1 14 LYS 14 317 317 LYS LYS D . n B 1 15 VAL 15 318 318 VAL VAL D . n B 1 16 THR 16 319 319 THR THR D . n B 1 17 SER 17 320 320 SER SER D . n B 1 18 LYS 18 321 321 LYS LYS D . n B 1 19 CYS 19 322 322 CYS CYS D . n B 1 20 GLY 20 323 323 GLY GLY D . n B 1 21 SER 21 324 324 SER SER D . n B 1 22 LEU 22 325 325 LEU LEU D . n B 1 23 GLY 23 326 326 GLY GLY D . n B 1 24 ASN 24 327 327 ASN ASN D . n B 1 25 ILE 25 328 328 ILE ILE D . n B 1 26 HIS 26 329 329 HIS HIS D . n B 1 27 HIS 27 330 330 HIS HIS D . n B 1 28 LYS 28 331 331 LYS LYS D . n B 1 29 PRO 29 332 332 PRO PRO D . n B 1 30 GLY 30 333 333 GLY GLY D . n B 1 31 GLY 31 334 334 GLY GLY D . n B 1 32 GLY 32 335 335 GLY GLY D . n B 1 33 GLN 33 336 336 GLN GLN D . n B 1 34 VAL 34 337 337 VAL VAL D . n B 1 35 GLU 35 338 338 GLU GLU D . n B 1 36 VAL 36 339 339 VAL VAL D . n B 1 37 LYS 37 340 340 LYS LYS D . n B 1 38 SER 38 341 341 SER SER D . n B 1 39 GLU 39 342 342 GLU GLU D . n B 1 40 LYS 40 343 343 LYS LYS D . n B 1 41 LEU 41 344 344 LEU LEU D . n B 1 42 ASP 42 345 345 ASP ASP D . n B 1 43 PHE 43 346 346 PHE PHE D . n B 1 44 LYS 44 347 347 LYS LYS D . n B 1 45 ASP 45 348 348 ASP ASP D . n B 1 46 ARG 46 349 349 ARG ARG D . n B 1 47 VAL 47 350 350 VAL VAL D . n B 1 48 GLN 48 351 351 GLN GLN D . n B 1 49 SER 49 352 352 SER SER D . n B 1 50 LYS 50 353 353 LYS LYS D . n B 1 51 ILE 51 354 354 ILE ILE D . n B 1 52 GLY 52 355 355 GLY GLY D . n B 1 53 SER 53 356 356 SER SER D . n B 1 54 LEU 54 357 357 LEU LEU D . n B 1 55 ASP 55 358 358 ASP ASP D . n B 1 56 ASN 56 359 359 ASN ASN D . n B 1 57 ILE 57 360 360 ILE ILE D . n B 1 58 THR 58 361 361 THR THR D . n B 1 59 HIS 59 362 362 HIS HIS D . n B 1 60 VAL 60 363 363 VAL VAL D . n B 1 61 PRO 61 364 364 PRO PRO D . n B 1 62 GLY 62 365 365 GLY GLY D . n B 1 63 GLY 63 366 366 GLY GLY D . n B 1 64 GLY 64 367 367 GLY GLY D . n B 1 65 ASN 65 368 368 ASN ASN D . n B 1 66 LYS 66 369 369 LYS LYS D . n B 1 67 LYS 67 370 370 LYS LYS D . n B 1 68 ILE 68 371 371 ILE ILE D . n B 1 69 GLU 69 372 372 GLU GLU D . n B 1 70 THR 70 373 373 THR THR D . n B 1 71 HIS 71 374 374 HIS HIS D . n B 1 72 LYS 72 375 375 LYS LYS D . n B 1 73 LEU 73 376 376 LEU LEU D . n B 1 74 THR 74 377 377 THR THR D . n B 1 75 PHE 75 378 378 PHE PHE D . n B 1 76 ARG 76 379 379 ARG ARG D . n B 1 77 GLU 77 380 380 GLU GLU D . n C 1 1 GLY 1 304 304 GLY GLY E . n C 1 2 SER 2 305 305 SER SER E . n C 1 3 VAL 3 306 306 VAL VAL E . n C 1 4 GLN 4 307 307 GLN GLN E . n C 1 5 ILE 5 308 308 ILE ILE E . n C 1 6 VAL 6 309 309 VAL VAL E . n C 1 7 TYR 7 310 310 TYR TYR E . n C 1 8 LYS 8 311 311 LYS LYS E . n C 1 9 PRO 9 312 312 PRO PRO E . n C 1 10 VAL 10 313 313 VAL VAL E . n C 1 11 ASP 11 314 314 ASP ASP E . n C 1 12 LEU 12 315 315 LEU LEU E . n C 1 13 SER 13 316 316 SER SER E . n C 1 14 LYS 14 317 317 LYS LYS E . n C 1 15 VAL 15 318 318 VAL VAL E . n C 1 16 THR 16 319 319 THR THR E . n C 1 17 SER 17 320 320 SER SER E . n C 1 18 LYS 18 321 321 LYS LYS E . n C 1 19 CYS 19 322 322 CYS CYS E . n C 1 20 GLY 20 323 323 GLY GLY E . n C 1 21 SER 21 324 324 SER SER E . n C 1 22 LEU 22 325 325 LEU LEU E . n C 1 23 GLY 23 326 326 GLY GLY E . n C 1 24 ASN 24 327 327 ASN ASN E . n C 1 25 ILE 25 328 328 ILE ILE E . n C 1 26 HIS 26 329 329 HIS HIS E . n C 1 27 HIS 27 330 330 HIS HIS E . n C 1 28 LYS 28 331 331 LYS LYS E . n C 1 29 PRO 29 332 332 PRO PRO E . n C 1 30 GLY 30 333 333 GLY GLY E . n C 1 31 GLY 31 334 334 GLY GLY E . n C 1 32 GLY 32 335 335 GLY GLY E . n C 1 33 GLN 33 336 336 GLN GLN E . n C 1 34 VAL 34 337 337 VAL VAL E . n C 1 35 GLU 35 338 338 GLU GLU E . n C 1 36 VAL 36 339 339 VAL VAL E . n C 1 37 LYS 37 340 340 LYS LYS E . n C 1 38 SER 38 341 341 SER SER E . n C 1 39 GLU 39 342 342 GLU GLU E . n C 1 40 LYS 40 343 343 LYS LYS E . n C 1 41 LEU 41 344 344 LEU LEU E . n C 1 42 ASP 42 345 345 ASP ASP E . n C 1 43 PHE 43 346 346 PHE PHE E . n C 1 44 LYS 44 347 347 LYS LYS E . n C 1 45 ASP 45 348 348 ASP ASP E . n C 1 46 ARG 46 349 349 ARG ARG E . n C 1 47 VAL 47 350 350 VAL VAL E . n C 1 48 GLN 48 351 351 GLN GLN E . n C 1 49 SER 49 352 352 SER SER E . n C 1 50 LYS 50 353 353 LYS LYS E . n C 1 51 ILE 51 354 354 ILE ILE E . n C 1 52 GLY 52 355 355 GLY GLY E . n C 1 53 SER 53 356 356 SER SER E . n C 1 54 LEU 54 357 357 LEU LEU E . n C 1 55 ASP 55 358 358 ASP ASP E . n C 1 56 ASN 56 359 359 ASN ASN E . n C 1 57 ILE 57 360 360 ILE ILE E . n C 1 58 THR 58 361 361 THR THR E . n C 1 59 HIS 59 362 362 HIS HIS E . n C 1 60 VAL 60 363 363 VAL VAL E . n C 1 61 PRO 61 364 364 PRO PRO E . n C 1 62 GLY 62 365 365 GLY GLY E . n C 1 63 GLY 63 366 366 GLY GLY E . n C 1 64 GLY 64 367 367 GLY GLY E . n C 1 65 ASN 65 368 368 ASN ASN E . n C 1 66 LYS 66 369 369 LYS LYS E . n C 1 67 LYS 67 370 370 LYS LYS E . n C 1 68 ILE 68 371 371 ILE ILE E . n C 1 69 GLU 69 372 372 GLU GLU E . n C 1 70 THR 70 373 373 THR THR E . n C 1 71 HIS 71 374 374 HIS HIS E . n C 1 72 LYS 72 375 375 LYS LYS E . n C 1 73 LEU 73 376 376 LEU LEU E . n C 1 74 THR 74 377 377 THR THR E . n C 1 75 PHE 75 378 378 PHE PHE E . n C 1 76 ARG 76 379 379 ARG ARG E . n C 1 77 GLU 77 380 380 GLU GLU E . n D 1 1 GLY 1 304 304 GLY GLY F . n D 1 2 SER 2 305 305 SER SER F . n D 1 3 VAL 3 306 306 VAL VAL F . n D 1 4 GLN 4 307 307 GLN GLN F . n D 1 5 ILE 5 308 308 ILE ILE F . n D 1 6 VAL 6 309 309 VAL VAL F . n D 1 7 TYR 7 310 310 TYR TYR F . n D 1 8 LYS 8 311 311 LYS LYS F . n D 1 9 PRO 9 312 312 PRO PRO F . n D 1 10 VAL 10 313 313 VAL VAL F . n D 1 11 ASP 11 314 314 ASP ASP F . n D 1 12 LEU 12 315 315 LEU LEU F . n D 1 13 SER 13 316 316 SER SER F . n D 1 14 LYS 14 317 317 LYS LYS F . n D 1 15 VAL 15 318 318 VAL VAL F . n D 1 16 THR 16 319 319 THR THR F . n D 1 17 SER 17 320 320 SER SER F . n D 1 18 LYS 18 321 321 LYS LYS F . n D 1 19 CYS 19 322 322 CYS CYS F . n D 1 20 GLY 20 323 323 GLY GLY F . n D 1 21 SER 21 324 324 SER SER F . n D 1 22 LEU 22 325 325 LEU LEU F . n D 1 23 GLY 23 326 326 GLY GLY F . n D 1 24 ASN 24 327 327 ASN ASN F . n D 1 25 ILE 25 328 328 ILE ILE F . n D 1 26 HIS 26 329 329 HIS HIS F . n D 1 27 HIS 27 330 330 HIS HIS F . n D 1 28 LYS 28 331 331 LYS LYS F . n D 1 29 PRO 29 332 332 PRO PRO F . n D 1 30 GLY 30 333 333 GLY GLY F . n D 1 31 GLY 31 334 334 GLY GLY F . n D 1 32 GLY 32 335 335 GLY GLY F . n D 1 33 GLN 33 336 336 GLN GLN F . n D 1 34 VAL 34 337 337 VAL VAL F . n D 1 35 GLU 35 338 338 GLU GLU F . n D 1 36 VAL 36 339 339 VAL VAL F . n D 1 37 LYS 37 340 340 LYS LYS F . n D 1 38 SER 38 341 341 SER SER F . n D 1 39 GLU 39 342 342 GLU GLU F . n D 1 40 LYS 40 343 343 LYS LYS F . n D 1 41 LEU 41 344 344 LEU LEU F . n D 1 42 ASP 42 345 345 ASP ASP F . n D 1 43 PHE 43 346 346 PHE PHE F . n D 1 44 LYS 44 347 347 LYS LYS F . n D 1 45 ASP 45 348 348 ASP ASP F . n D 1 46 ARG 46 349 349 ARG ARG F . n D 1 47 VAL 47 350 350 VAL VAL F . n D 1 48 GLN 48 351 351 GLN GLN F . n D 1 49 SER 49 352 352 SER SER F . n D 1 50 LYS 50 353 353 LYS LYS F . n D 1 51 ILE 51 354 354 ILE ILE F . n D 1 52 GLY 52 355 355 GLY GLY F . n D 1 53 SER 53 356 356 SER SER F . n D 1 54 LEU 54 357 357 LEU LEU F . n D 1 55 ASP 55 358 358 ASP ASP F . n D 1 56 ASN 56 359 359 ASN ASN F . n D 1 57 ILE 57 360 360 ILE ILE F . n D 1 58 THR 58 361 361 THR THR F . n D 1 59 HIS 59 362 362 HIS HIS F . n D 1 60 VAL 60 363 363 VAL VAL F . n D 1 61 PRO 61 364 364 PRO PRO F . n D 1 62 GLY 62 365 365 GLY GLY F . n D 1 63 GLY 63 366 366 GLY GLY F . n D 1 64 GLY 64 367 367 GLY GLY F . n D 1 65 ASN 65 368 368 ASN ASN F . n D 1 66 LYS 66 369 369 LYS LYS F . n D 1 67 LYS 67 370 370 LYS LYS F . n D 1 68 ILE 68 371 371 ILE ILE F . n D 1 69 GLU 69 372 372 GLU GLU F . n D 1 70 THR 70 373 373 THR THR F . n D 1 71 HIS 71 374 374 HIS HIS F . n D 1 72 LYS 72 375 375 LYS LYS F . n D 1 73 LEU 73 376 376 LEU LEU F . n D 1 74 THR 74 377 377 THR THR F . n D 1 75 PHE 75 378 378 PHE PHE F . n D 1 76 ARG 76 379 379 ARG ARG F . n D 1 77 GLU 77 380 380 GLU GLU F . n E 1 1 GLY 1 304 304 GLY GLY G . n E 1 2 SER 2 305 305 SER SER G . n E 1 3 VAL 3 306 306 VAL VAL G . n E 1 4 GLN 4 307 307 GLN GLN G . n E 1 5 ILE 5 308 308 ILE ILE G . n E 1 6 VAL 6 309 309 VAL VAL G . n E 1 7 TYR 7 310 310 TYR TYR G . n E 1 8 LYS 8 311 311 LYS LYS G . n E 1 9 PRO 9 312 312 PRO PRO G . n E 1 10 VAL 10 313 313 VAL VAL G . n E 1 11 ASP 11 314 314 ASP ASP G . n E 1 12 LEU 12 315 315 LEU LEU G . n E 1 13 SER 13 316 316 SER SER G . n E 1 14 LYS 14 317 317 LYS LYS G . n E 1 15 VAL 15 318 318 VAL VAL G . n E 1 16 THR 16 319 319 THR THR G . n E 1 17 SER 17 320 320 SER SER G . n E 1 18 LYS 18 321 321 LYS LYS G . n E 1 19 CYS 19 322 322 CYS CYS G . n E 1 20 GLY 20 323 323 GLY GLY G . n E 1 21 SER 21 324 324 SER SER G . n E 1 22 LEU 22 325 325 LEU LEU G . n E 1 23 GLY 23 326 326 GLY GLY G . n E 1 24 ASN 24 327 327 ASN ASN G . n E 1 25 ILE 25 328 328 ILE ILE G . n E 1 26 HIS 26 329 329 HIS HIS G . n E 1 27 HIS 27 330 330 HIS HIS G . n E 1 28 LYS 28 331 331 LYS LYS G . n E 1 29 PRO 29 332 332 PRO PRO G . n E 1 30 GLY 30 333 333 GLY GLY G . n E 1 31 GLY 31 334 334 GLY GLY G . n E 1 32 GLY 32 335 335 GLY GLY G . n E 1 33 GLN 33 336 336 GLN GLN G . n E 1 34 VAL 34 337 337 VAL VAL G . n E 1 35 GLU 35 338 338 GLU GLU G . n E 1 36 VAL 36 339 339 VAL VAL G . n E 1 37 LYS 37 340 340 LYS LYS G . n E 1 38 SER 38 341 341 SER SER G . n E 1 39 GLU 39 342 342 GLU GLU G . n E 1 40 LYS 40 343 343 LYS LYS G . n E 1 41 LEU 41 344 344 LEU LEU G . n E 1 42 ASP 42 345 345 ASP ASP G . n E 1 43 PHE 43 346 346 PHE PHE G . n E 1 44 LYS 44 347 347 LYS LYS G . n E 1 45 ASP 45 348 348 ASP ASP G . n E 1 46 ARG 46 349 349 ARG ARG G . n E 1 47 VAL 47 350 350 VAL VAL G . n E 1 48 GLN 48 351 351 GLN GLN G . n E 1 49 SER 49 352 352 SER SER G . n E 1 50 LYS 50 353 353 LYS LYS G . n E 1 51 ILE 51 354 354 ILE ILE G . n E 1 52 GLY 52 355 355 GLY GLY G . n E 1 53 SER 53 356 356 SER SER G . n E 1 54 LEU 54 357 357 LEU LEU G . n E 1 55 ASP 55 358 358 ASP ASP G . n E 1 56 ASN 56 359 359 ASN ASN G . n E 1 57 ILE 57 360 360 ILE ILE G . n E 1 58 THR 58 361 361 THR THR G . n E 1 59 HIS 59 362 362 HIS HIS G . n E 1 60 VAL 60 363 363 VAL VAL G . n E 1 61 PRO 61 364 364 PRO PRO G . n E 1 62 GLY 62 365 365 GLY GLY G . n E 1 63 GLY 63 366 366 GLY GLY G . n E 1 64 GLY 64 367 367 GLY GLY G . n E 1 65 ASN 65 368 368 ASN ASN G . n E 1 66 LYS 66 369 369 LYS LYS G . n E 1 67 LYS 67 370 370 LYS LYS G . n E 1 68 ILE 68 371 371 ILE ILE G . n E 1 69 GLU 69 372 372 GLU GLU G . n E 1 70 THR 70 373 373 THR THR G . n E 1 71 HIS 71 374 374 HIS HIS G . n E 1 72 LYS 72 375 375 LYS LYS G . n E 1 73 LEU 73 376 376 LEU LEU G . n E 1 74 THR 74 377 377 THR THR G . n E 1 75 PHE 75 378 378 PHE PHE G . n E 1 76 ARG 76 379 379 ARG ARG G . n E 1 77 GLU 77 380 380 GLU GLU G . n F 1 1 GLY 1 304 304 GLY GLY H . n F 1 2 SER 2 305 305 SER SER H . n F 1 3 VAL 3 306 306 VAL VAL H . n F 1 4 GLN 4 307 307 GLN GLN H . n F 1 5 ILE 5 308 308 ILE ILE H . n F 1 6 VAL 6 309 309 VAL VAL H . n F 1 7 TYR 7 310 310 TYR TYR H . n F 1 8 LYS 8 311 311 LYS LYS H . n F 1 9 PRO 9 312 312 PRO PRO H . n F 1 10 VAL 10 313 313 VAL VAL H . n F 1 11 ASP 11 314 314 ASP ASP H . n F 1 12 LEU 12 315 315 LEU LEU H . n F 1 13 SER 13 316 316 SER SER H . n F 1 14 LYS 14 317 317 LYS LYS H . n F 1 15 VAL 15 318 318 VAL VAL H . n F 1 16 THR 16 319 319 THR THR H . n F 1 17 SER 17 320 320 SER SER H . n F 1 18 LYS 18 321 321 LYS LYS H . n F 1 19 CYS 19 322 322 CYS CYS H . n F 1 20 GLY 20 323 323 GLY GLY H . n F 1 21 SER 21 324 324 SER SER H . n F 1 22 LEU 22 325 325 LEU LEU H . n F 1 23 GLY 23 326 326 GLY GLY H . n F 1 24 ASN 24 327 327 ASN ASN H . n F 1 25 ILE 25 328 328 ILE ILE H . n F 1 26 HIS 26 329 329 HIS HIS H . n F 1 27 HIS 27 330 330 HIS HIS H . n F 1 28 LYS 28 331 331 LYS LYS H . n F 1 29 PRO 29 332 332 PRO PRO H . n F 1 30 GLY 30 333 333 GLY GLY H . n F 1 31 GLY 31 334 334 GLY GLY H . n F 1 32 GLY 32 335 335 GLY GLY H . n F 1 33 GLN 33 336 336 GLN GLN H . n F 1 34 VAL 34 337 337 VAL VAL H . n F 1 35 GLU 35 338 338 GLU GLU H . n F 1 36 VAL 36 339 339 VAL VAL H . n F 1 37 LYS 37 340 340 LYS LYS H . n F 1 38 SER 38 341 341 SER SER H . n F 1 39 GLU 39 342 342 GLU GLU H . n F 1 40 LYS 40 343 343 LYS LYS H . n F 1 41 LEU 41 344 344 LEU LEU H . n F 1 42 ASP 42 345 345 ASP ASP H . n F 1 43 PHE 43 346 346 PHE PHE H . n F 1 44 LYS 44 347 347 LYS LYS H . n F 1 45 ASP 45 348 348 ASP ASP H . n F 1 46 ARG 46 349 349 ARG ARG H . n F 1 47 VAL 47 350 350 VAL VAL H . n F 1 48 GLN 48 351 351 GLN GLN H . n F 1 49 SER 49 352 352 SER SER H . n F 1 50 LYS 50 353 353 LYS LYS H . n F 1 51 ILE 51 354 354 ILE ILE H . n F 1 52 GLY 52 355 355 GLY GLY H . n F 1 53 SER 53 356 356 SER SER H . n F 1 54 LEU 54 357 357 LEU LEU H . n F 1 55 ASP 55 358 358 ASP ASP H . n F 1 56 ASN 56 359 359 ASN ASN H . n F 1 57 ILE 57 360 360 ILE ILE H . n F 1 58 THR 58 361 361 THR THR H . n F 1 59 HIS 59 362 362 HIS HIS H . n F 1 60 VAL 60 363 363 VAL VAL H . n F 1 61 PRO 61 364 364 PRO PRO H . n F 1 62 GLY 62 365 365 GLY GLY H . n F 1 63 GLY 63 366 366 GLY GLY H . n F 1 64 GLY 64 367 367 GLY GLY H . n F 1 65 ASN 65 368 368 ASN ASN H . n F 1 66 LYS 66 369 369 LYS LYS H . n F 1 67 LYS 67 370 370 LYS LYS H . n F 1 68 ILE 68 371 371 ILE ILE H . n F 1 69 GLU 69 372 372 GLU GLU H . n F 1 70 THR 70 373 373 THR THR H . n F 1 71 HIS 71 374 374 HIS HIS H . n F 1 72 LYS 72 375 375 LYS LYS H . n F 1 73 LEU 73 376 376 LEU LEU H . n F 1 74 THR 74 377 377 THR THR H . n F 1 75 PHE 75 378 378 PHE PHE H . n F 1 76 ARG 76 379 379 ARG ARG H . n F 1 77 GLU 77 380 380 GLU GLU H . n # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9BXQ _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9BXQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9BXQ _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 9BXQ _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.003 ? 3576 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.683 ? 4782 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 5.330 ? 474 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.050 ? 534 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.002 ? 612 ? f_plane_restr ? ? # _struct.entry_id 9BXQ _struct.title 'Paired Helical Filaments purified from Down Syndrome individual brain tissue applied to graphene oxide antibody affinity grids' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9BXQ _struct_keywords.text 'Amyloid, filament, neurodegeneration, Down syndrome, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TAU_HUMAN _struct_ref.pdbx_db_accession P10636 _struct_ref.pdbx_db_isoform P10636-7 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code GSVQIVYKPVDLSKVTSKCGSLGNIHHKPGGGQVEVKSEKLDFKDRVQSKIGSLDNITHVPGGGNKKIETHKLTFRE _struct_ref.pdbx_align_begin 275 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9BXQ C 1 ? 77 ? P10636 275 ? 351 ? 304 380 2 1 9BXQ D 1 ? 77 ? P10636 275 ? 351 ? 304 380 3 1 9BXQ E 1 ? 77 ? P10636 275 ? 351 ? 304 380 4 1 9BXQ F 1 ? 77 ? P10636 275 ? 351 ? 304 380 5 1 9BXQ G 1 ? 77 ? P10636 275 ? 351 ? 304 380 6 1 9BXQ H 1 ? 77 ? P10636 275 ? 351 ? 304 380 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 3 ? AA3 ? 3 ? AA4 ? 3 ? AA5 ? 3 ? AA6 ? 3 ? AA7 ? 3 ? AA8 ? 3 ? AA9 ? 3 ? AB1 ? 3 ? AB2 ? 3 ? AB3 ? 3 ? AB4 ? 3 ? AB5 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA3 1 2 ? parallel AA3 2 3 ? parallel AA4 1 2 ? parallel AA4 2 3 ? parallel AA5 1 2 ? parallel AA5 2 3 ? parallel AA6 1 2 ? parallel AA6 2 3 ? parallel AA7 1 2 ? parallel AA7 2 3 ? parallel AA8 1 2 ? parallel AA8 2 3 ? parallel AA9 1 2 ? parallel AA9 2 3 ? parallel AB1 1 2 ? parallel AB1 2 3 ? parallel AB2 1 2 ? parallel AB2 2 3 ? parallel AB3 1 2 ? parallel AB3 2 3 ? parallel AB4 1 2 ? parallel AB4 2 3 ? parallel AB5 1 2 ? parallel AB5 2 3 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 SER A 2 ? TYR A 7 ? SER C 305 TYR C 310 AA1 2 SER C 2 ? TYR C 7 ? SER E 305 TYR E 310 AA1 3 SER E 2 ? TYR E 7 ? SER G 305 TYR G 310 AA2 1 VAL A 10 ? ASP A 11 ? VAL C 313 ASP C 314 AA2 2 VAL C 10 ? ASP C 11 ? VAL E 313 ASP E 314 AA2 3 VAL E 10 ? ASP E 11 ? VAL G 313 ASP G 314 AA3 1 LYS A 14 ? VAL A 15 ? LYS C 317 VAL C 318 AA3 2 LYS C 14 ? VAL C 15 ? LYS E 317 VAL E 318 AA3 3 LYS E 14 ? VAL E 15 ? LYS G 317 VAL G 318 AA4 1 GLN A 33 ? LYS A 37 ? GLN C 336 LYS C 340 AA4 2 GLN C 33 ? LYS C 37 ? GLN E 336 LYS E 340 AA4 3 GLN E 33 ? LYS E 37 ? GLN G 336 LYS G 340 AA5 1 LYS A 40 ? LEU A 41 ? LYS C 343 LEU C 344 AA5 2 LYS C 40 ? LEU C 41 ? LYS E 343 LEU E 344 AA5 3 LYS E 40 ? LEU E 41 ? LYS G 343 LEU G 344 AA6 1 ASN A 56 ? ILE A 57 ? ASN C 359 ILE C 360 AA6 2 ASN C 56 ? ILE C 57 ? ASN E 359 ILE E 360 AA6 3 ASN E 56 ? ILE E 57 ? ASN G 359 ILE G 360 AA7 1 LYS A 66 ? THR A 70 ? LYS C 369 THR C 373 AA7 2 LYS C 66 ? THR C 70 ? LYS E 369 THR E 373 AA7 3 LYS E 66 ? THR E 70 ? LYS G 369 THR G 373 AA8 1 SER B 2 ? TYR B 7 ? SER D 305 TYR D 310 AA8 2 SER D 2 ? TYR D 7 ? SER F 305 TYR F 310 AA8 3 SER F 2 ? TYR F 7 ? SER H 305 TYR H 310 AA9 1 VAL B 10 ? ASP B 11 ? VAL D 313 ASP D 314 AA9 2 VAL D 10 ? ASP D 11 ? VAL F 313 ASP F 314 AA9 3 VAL F 10 ? ASP F 11 ? VAL H 313 ASP H 314 AB1 1 LYS B 14 ? VAL B 15 ? LYS D 317 VAL D 318 AB1 2 LYS D 14 ? VAL D 15 ? LYS F 317 VAL F 318 AB1 3 LYS F 14 ? VAL F 15 ? LYS H 317 VAL H 318 AB2 1 GLN B 33 ? LYS B 37 ? GLN D 336 LYS D 340 AB2 2 GLN D 33 ? LYS D 37 ? GLN F 336 LYS F 340 AB2 3 GLN F 33 ? LYS F 37 ? GLN H 336 LYS H 340 AB3 1 LYS B 40 ? LEU B 41 ? LYS D 343 LEU D 344 AB3 2 LYS D 40 ? LEU D 41 ? LYS F 343 LEU F 344 AB3 3 LYS F 40 ? LEU F 41 ? LYS H 343 LEU H 344 AB4 1 ASN B 56 ? ILE B 57 ? ASN D 359 ILE D 360 AB4 2 ASN D 56 ? ILE D 57 ? ASN F 359 ILE F 360 AB4 3 ASN F 56 ? ILE F 57 ? ASN H 359 ILE H 360 AB5 1 LYS B 66 ? THR B 70 ? LYS D 369 THR D 373 AB5 2 LYS D 66 ? THR D 70 ? LYS F 369 THR F 373 AB5 3 LYS F 66 ? THR F 70 ? LYS H 369 THR H 373 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL A 6 ? N VAL C 309 O TYR C 7 ? O TYR E 310 AA1 2 3 N VAL C 6 ? N VAL E 309 O TYR E 7 ? O TYR G 310 AA2 1 2 N VAL A 10 ? N VAL C 313 O ASP C 11 ? O ASP E 314 AA2 2 3 N VAL C 10 ? N VAL E 313 O ASP E 11 ? O ASP G 314 AA3 1 2 N LYS A 14 ? N LYS C 317 O VAL C 15 ? O VAL E 318 AA3 2 3 N LYS C 14 ? N LYS E 317 O VAL E 15 ? O VAL G 318 AA4 1 2 N GLN A 33 ? N GLN C 336 O VAL C 34 ? O VAL E 337 AA4 2 3 N GLN C 33 ? N GLN E 336 O VAL E 34 ? O VAL G 337 AA5 1 2 N LYS A 40 ? N LYS C 343 O LEU C 41 ? O LEU E 344 AA5 2 3 N LYS C 40 ? N LYS E 343 O LEU E 41 ? O LEU G 344 AA6 1 2 N ILE A 57 ? N ILE C 360 O ASN C 56 ? O ASN E 359 AA6 2 3 N ILE C 57 ? N ILE E 360 O ASN E 56 ? O ASN G 359 AA7 1 2 N ILE A 68 ? N ILE C 371 O LYS C 67 ? O LYS E 370 AA7 2 3 N ILE C 68 ? N ILE E 371 O LYS E 67 ? O LYS G 370 AA8 1 2 N VAL B 6 ? N VAL D 309 O TYR D 7 ? O TYR F 310 AA8 2 3 N VAL D 6 ? N VAL F 309 O TYR F 7 ? O TYR H 310 AA9 1 2 N VAL B 10 ? N VAL D 313 O ASP D 11 ? O ASP F 314 AA9 2 3 N VAL D 10 ? N VAL F 313 O ASP F 11 ? O ASP H 314 AB1 1 2 N LYS B 14 ? N LYS D 317 O VAL D 15 ? O VAL F 318 AB1 2 3 N LYS D 14 ? N LYS F 317 O VAL F 15 ? O VAL H 318 AB2 1 2 N GLN B 33 ? N GLN D 336 O VAL D 34 ? O VAL F 337 AB2 2 3 N GLN D 33 ? N GLN F 336 O VAL F 34 ? O VAL H 337 AB3 1 2 N LYS B 40 ? N LYS D 343 O LEU D 41 ? O LEU F 344 AB3 2 3 N LYS D 40 ? N LYS F 343 O LEU F 41 ? O LEU H 344 AB4 1 2 N ILE B 57 ? N ILE D 360 O ASN D 56 ? O ASN F 359 AB4 2 3 N ILE D 57 ? N ILE F 360 O ASN F 56 ? O ASN H 359 AB5 1 2 N ILE B 68 ? N ILE D 371 O LYS D 67 ? O LYS F 370 AB5 2 3 N ILE D 68 ? N ILE F 371 O LYS F 67 ? O LYS H 370 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OXT D GLU 380 ? ? HB2 F GLU 380 ? ? 0.62 2 1 OXT E GLU 380 ? ? HB2 G GLU 380 ? ? 0.67 3 1 OXT F GLU 380 ? ? HB2 H GLU 380 ? ? 0.69 4 1 OXT C GLU 380 ? ? HB2 E GLU 380 ? ? 0.74 5 1 OE1 C GLU 338 ? ? HZ1 D LYS 331 ? ? 0.77 6 1 OE1 G GLU 338 ? ? HZ1 H LYS 331 ? ? 0.78 7 1 OE1 D GLU 338 ? ? HZ1 E LYS 331 ? ? 0.79 8 1 OE1 E GLU 338 ? ? HZ1 F LYS 331 ? ? 0.79 9 1 OE1 F GLU 338 ? ? HZ1 G LYS 331 ? ? 0.80 10 1 CD D GLU 338 ? ? HZ1 E LYS 331 ? ? 1.09 11 1 CD E GLU 338 ? ? HZ1 F LYS 331 ? ? 1.09 12 1 CD G GLU 338 ? ? HZ1 H LYS 331 ? ? 1.10 13 1 CD F GLU 338 ? ? HZ1 G LYS 331 ? ? 1.10 14 1 CD C GLU 338 ? ? HZ1 D LYS 331 ? ? 1.10 15 1 HD11 D LEU 315 ? ? HD21 F LEU 315 ? ? 1.24 16 1 HD11 E LEU 315 ? ? HD21 G LEU 315 ? ? 1.26 17 1 HG C SER 316 ? ? HZ2 E LYS 370 ? ? 1.26 18 1 HD11 F LEU 315 ? ? HD21 H LEU 315 ? ? 1.27 19 1 HB2 C LYS 311 ? ? HE2 E LYS 311 ? ? 1.27 20 1 HB2 D LYS 311 ? ? HE2 F LYS 311 ? ? 1.29 21 1 HB2 E LYS 311 ? ? HE2 G LYS 311 ? ? 1.31 22 1 HB2 F LYS 311 ? ? HE2 H LYS 311 ? ? 1.31 23 1 HD11 C LEU 315 ? ? HD21 E LEU 315 ? ? 1.31 24 1 HG D SER 316 ? ? HZ2 F LYS 370 ? ? 1.32 25 1 HG F SER 316 ? ? HZ2 H LYS 370 ? ? 1.33 26 1 HG E SER 316 ? ? HZ2 G LYS 370 ? ? 1.34 27 1 HG1 D THR 319 ? ? HG22 F THR 319 ? ? 1.35 28 1 CD2 C LEU 325 ? ? HD11 E LEU 325 ? ? 1.43 29 1 CD2 D LEU 325 ? ? HD11 F LEU 325 ? ? 1.43 30 1 CD2 F LEU 325 ? ? HD11 H LEU 325 ? ? 1.43 31 1 CD2 E LEU 325 ? ? HD11 G LEU 325 ? ? 1.43 32 1 OE1 C GLU 338 ? ? NZ D LYS 331 ? ? 1.45 33 1 OE1 D GLU 338 ? ? NZ E LYS 331 ? ? 1.45 34 1 OE1 E GLU 338 ? ? NZ F LYS 331 ? ? 1.46 35 1 OE1 G GLU 338 ? ? NZ H LYS 331 ? ? 1.46 36 1 OE1 F GLU 338 ? ? NZ G LYS 331 ? ? 1.47 37 1 OXT D GLU 380 ? ? CB F GLU 380 ? ? 1.53 38 1 HB2 C GLU 342 ? ? O E GLU 342 ? ? 1.55 39 1 OXT C GLU 380 ? ? CB E GLU 380 ? ? 1.56 40 1 HB2 D GLU 342 ? ? O F GLU 342 ? ? 1.56 41 1 OE2 F GLU 338 ? ? HZ1 G LYS 331 ? ? 1.57 42 1 OE2 E GLU 338 ? ? HZ1 F LYS 331 ? ? 1.57 43 1 OE2 D GLU 338 ? ? HZ1 E LYS 331 ? ? 1.57 44 1 H C LEU 357 ? ? O E SER 356 ? ? 1.58 45 1 OE2 G GLU 338 ? ? HZ1 H LYS 331 ? ? 1.58 46 1 OE2 C GLU 338 ? ? HZ1 D LYS 331 ? ? 1.58 47 1 HB2 E GLU 342 ? ? O G GLU 342 ? ? 1.59 48 1 OXT E GLU 380 ? ? CB G GLU 380 ? ? 1.59 49 1 H C GLY 333 ? ? O E PRO 332 ? ? 1.59 50 1 OXT F GLU 380 ? ? CB H GLU 380 ? ? 1.60 51 1 HB2 F GLU 342 ? ? O H GLU 342 ? ? 1.60 52 1 OE1 C GLU 338 ? ? CE D LYS 331 ? ? 2.07 53 1 CD D GLU 338 ? ? NZ E LYS 331 ? ? 2.09 54 1 CD E GLU 338 ? ? NZ F LYS 331 ? ? 2.09 55 1 CD G GLU 338 ? ? NZ H LYS 331 ? ? 2.10 56 1 CD F GLU 338 ? ? NZ G LYS 331 ? ? 2.10 57 1 CD C GLU 338 ? ? NZ D LYS 331 ? ? 2.10 58 1 OE1 E GLU 338 ? ? CE F LYS 331 ? ? 2.11 59 1 OE1 D GLU 338 ? ? CE E LYS 331 ? ? 2.11 60 1 OE1 G GLU 338 ? ? CE H LYS 331 ? ? 2.11 61 1 OE1 F GLU 338 ? ? CE G LYS 331 ? ? 2.11 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9BXQ _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 9BXQ _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.1 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 79599 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.4 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source NATURAL _em_entity_assembly.type TISSUE _em_entity_assembly.name 'Paired Helical Filaments purified from Down Syndrome individual brain tissue applied to graphene oxide antibody affinity grids' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 9BXQ _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 800 _em_imaging.nominal_defocus_max 2000 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter 70 _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_vitrification.entry_id 9BXQ _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9BXQ _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ARG N N N N 1 ARG CA C N S 2 ARG C C N N 3 ARG O O N N 4 ARG CB C N N 5 ARG CG C N N 6 ARG CD C N N 7 ARG NE N N N 8 ARG CZ C N N 9 ARG NH1 N N N 10 ARG NH2 N N N 11 ARG OXT O N N 12 ARG H H N N 13 ARG H2 H N N 14 ARG HA H N N 15 ARG HB2 H N N 16 ARG HB3 H N N 17 ARG HG2 H N N 18 ARG HG3 H N N 19 ARG HD2 H N N 20 ARG HD3 H N N 21 ARG HE H N N 22 ARG HH11 H N N 23 ARG HH12 H N N 24 ARG HH21 H N N 25 ARG HH22 H N N 26 ARG HXT H N N 27 ASN N N N N 28 ASN CA C N S 29 ASN C C N N 30 ASN O O N N 31 ASN CB C N N 32 ASN CG C N N 33 ASN OD1 O N N 34 ASN ND2 N N N 35 ASN OXT O N N 36 ASN H H N N 37 ASN H2 H N N 38 ASN HA H N N 39 ASN HB2 H N N 40 ASN HB3 H N N 41 ASN HD21 H N N 42 ASN HD22 H N N 43 ASN HXT H N N 44 ASP N N N N 45 ASP CA C N S 46 ASP C C N N 47 ASP O O N N 48 ASP CB C N N 49 ASP CG C N N 50 ASP OD1 O N N 51 ASP OD2 O N N 52 ASP OXT O N N 53 ASP H H N N 54 ASP H2 H N N 55 ASP HA H N N 56 ASP HB2 H N N 57 ASP HB3 H N N 58 ASP HD2 H N N 59 ASP HXT H N N 60 CYS N N N N 61 CYS CA C N R 62 CYS C C N N 63 CYS O O N N 64 CYS CB C N N 65 CYS SG S N N 66 CYS OXT O N N 67 CYS H H N N 68 CYS H2 H N N 69 CYS HA H N N 70 CYS HB2 H N N 71 CYS HB3 H N N 72 CYS HG H N N 73 CYS HXT H N N 74 GLN N N N N 75 GLN CA C N S 76 GLN C C N N 77 GLN O O N N 78 GLN CB C N N 79 GLN CG C N N 80 GLN CD C N N 81 GLN OE1 O N N 82 GLN NE2 N N N 83 GLN OXT O N N 84 GLN H H N N 85 GLN H2 H N N 86 GLN HA H N N 87 GLN HB2 H N N 88 GLN HB3 H N N 89 GLN HG2 H N N 90 GLN HG3 H N N 91 GLN HE21 H N N 92 GLN HE22 H N N 93 GLN HXT H N N 94 GLU N N N N 95 GLU CA C N S 96 GLU C C N N 97 GLU O O N N 98 GLU CB C N N 99 GLU CG C N N 100 GLU CD C N N 101 GLU OE1 O N N 102 GLU OE2 O N N 103 GLU OXT O N N 104 GLU H H N N 105 GLU H2 H N N 106 GLU HA H N N 107 GLU HB2 H N N 108 GLU HB3 H N N 109 GLU HG2 H N N 110 GLU HG3 H N N 111 GLU HE2 H N N 112 GLU HXT H N N 113 GLY N N N N 114 GLY CA C N N 115 GLY C C N N 116 GLY O O N N 117 GLY OXT O N N 118 GLY H H N N 119 GLY H2 H N N 120 GLY HA2 H N N 121 GLY HA3 H N N 122 GLY HXT H N N 123 HIS N N N N 124 HIS CA C N S 125 HIS C C N N 126 HIS O O N N 127 HIS CB C N N 128 HIS CG C Y N 129 HIS ND1 N Y N 130 HIS CD2 C Y N 131 HIS CE1 C Y N 132 HIS NE2 N Y N 133 HIS OXT O N N 134 HIS H H N N 135 HIS H2 H N N 136 HIS HA H N N 137 HIS HB2 H N N 138 HIS HB3 H N N 139 HIS HD1 H N N 140 HIS HD2 H N N 141 HIS HE1 H N N 142 HIS HE2 H N N 143 HIS HXT H N N 144 ILE N N N N 145 ILE CA C N S 146 ILE C C N N 147 ILE O O N N 148 ILE CB C N S 149 ILE CG1 C N N 150 ILE CG2 C N N 151 ILE CD1 C N N 152 ILE OXT O N N 153 ILE H H N N 154 ILE H2 H N N 155 ILE HA H N N 156 ILE HB H N N 157 ILE HG12 H N N 158 ILE HG13 H N N 159 ILE HG21 H N N 160 ILE HG22 H N N 161 ILE HG23 H N N 162 ILE HD11 H N N 163 ILE HD12 H N N 164 ILE HD13 H N N 165 ILE HXT H N N 166 LEU N N N N 167 LEU CA C N S 168 LEU C C N N 169 LEU O O N N 170 LEU CB C N N 171 LEU CG C N N 172 LEU CD1 C N N 173 LEU CD2 C N N 174 LEU OXT O N N 175 LEU H H N N 176 LEU H2 H N N 177 LEU HA H N N 178 LEU HB2 H N N 179 LEU HB3 H N N 180 LEU HG H N N 181 LEU HD11 H N N 182 LEU HD12 H N N 183 LEU HD13 H N N 184 LEU HD21 H N N 185 LEU HD22 H N N 186 LEU HD23 H N N 187 LEU HXT H N N 188 LYS N N N N 189 LYS CA C N S 190 LYS C C N N 191 LYS O O N N 192 LYS CB C N N 193 LYS CG C N N 194 LYS CD C N N 195 LYS CE C N N 196 LYS NZ N N N 197 LYS OXT O N N 198 LYS H H N N 199 LYS H2 H N N 200 LYS HA H N N 201 LYS HB2 H N N 202 LYS HB3 H N N 203 LYS HG2 H N N 204 LYS HG3 H N N 205 LYS HD2 H N N 206 LYS HD3 H N N 207 LYS HE2 H N N 208 LYS HE3 H N N 209 LYS HZ1 H N N 210 LYS HZ2 H N N 211 LYS HZ3 H N N 212 LYS HXT H N N 213 PHE N N N N 214 PHE CA C N S 215 PHE C C N N 216 PHE O O N N 217 PHE CB C N N 218 PHE CG C Y N 219 PHE CD1 C Y N 220 PHE CD2 C Y N 221 PHE CE1 C Y N 222 PHE CE2 C Y N 223 PHE CZ C Y N 224 PHE OXT O N N 225 PHE H H N N 226 PHE H2 H N N 227 PHE HA H N N 228 PHE HB2 H N N 229 PHE HB3 H N N 230 PHE HD1 H N N 231 PHE HD2 H N N 232 PHE HE1 H N N 233 PHE HE2 H N N 234 PHE HZ H N N 235 PHE HXT H N N 236 PRO N N N N 237 PRO CA C N S 238 PRO C C N N 239 PRO O O N N 240 PRO CB C N N 241 PRO CG C N N 242 PRO CD C N N 243 PRO OXT O N N 244 PRO H H N N 245 PRO HA H N N 246 PRO HB2 H N N 247 PRO HB3 H N N 248 PRO HG2 H N N 249 PRO HG3 H N N 250 PRO HD2 H N N 251 PRO HD3 H N N 252 PRO HXT H N N 253 SER N N N N 254 SER CA C N S 255 SER C C N N 256 SER O O N N 257 SER CB C N N 258 SER OG O N N 259 SER OXT O N N 260 SER H H N N 261 SER H2 H N N 262 SER HA H N N 263 SER HB2 H N N 264 SER HB3 H N N 265 SER HG H N N 266 SER HXT H N N 267 THR N N N N 268 THR CA C N S 269 THR C C N N 270 THR O O N N 271 THR CB C N R 272 THR OG1 O N N 273 THR CG2 C N N 274 THR OXT O N N 275 THR H H N N 276 THR H2 H N N 277 THR HA H N N 278 THR HB H N N 279 THR HG1 H N N 280 THR HG21 H N N 281 THR HG22 H N N 282 THR HG23 H N N 283 THR HXT H N N 284 TYR N N N N 285 TYR CA C N S 286 TYR C C N N 287 TYR O O N N 288 TYR CB C N N 289 TYR CG C Y N 290 TYR CD1 C Y N 291 TYR CD2 C Y N 292 TYR CE1 C Y N 293 TYR CE2 C Y N 294 TYR CZ C Y N 295 TYR OH O N N 296 TYR OXT O N N 297 TYR H H N N 298 TYR H2 H N N 299 TYR HA H N N 300 TYR HB2 H N N 301 TYR HB3 H N N 302 TYR HD1 H N N 303 TYR HD2 H N N 304 TYR HE1 H N N 305 TYR HE2 H N N 306 TYR HH H N N 307 TYR HXT H N N 308 VAL N N N N 309 VAL CA C N S 310 VAL C C N N 311 VAL O O N N 312 VAL CB C N N 313 VAL CG1 C N N 314 VAL CG2 C N N 315 VAL OXT O N N 316 VAL H H N N 317 VAL H2 H N N 318 VAL HA H N N 319 VAL HB H N N 320 VAL HG11 H N N 321 VAL HG12 H N N 322 VAL HG13 H N N 323 VAL HG21 H N N 324 VAL HG22 H N N 325 VAL HG23 H N N 326 VAL HXT H N N 327 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG N CA sing N N 1 ARG N H sing N N 2 ARG N H2 sing N N 3 ARG CA C sing N N 4 ARG CA CB sing N N 5 ARG CA HA sing N N 6 ARG C O doub N N 7 ARG C OXT sing N N 8 ARG CB CG sing N N 9 ARG CB HB2 sing N N 10 ARG CB HB3 sing N N 11 ARG CG CD sing N N 12 ARG CG HG2 sing N N 13 ARG CG HG3 sing N N 14 ARG CD NE sing N N 15 ARG CD HD2 sing N N 16 ARG CD HD3 sing N N 17 ARG NE CZ sing N N 18 ARG NE HE sing N N 19 ARG CZ NH1 sing N N 20 ARG CZ NH2 doub N N 21 ARG NH1 HH11 sing N N 22 ARG NH1 HH12 sing N N 23 ARG NH2 HH21 sing N N 24 ARG NH2 HH22 sing N N 25 ARG OXT HXT sing N N 26 ASN N CA sing N N 27 ASN N H sing N N 28 ASN N H2 sing N N 29 ASN CA C sing N N 30 ASN CA CB sing N N 31 ASN CA HA sing N N 32 ASN C O doub N N 33 ASN C OXT sing N N 34 ASN CB CG sing N N 35 ASN CB HB2 sing N N 36 ASN CB HB3 sing N N 37 ASN CG OD1 doub N N 38 ASN CG ND2 sing N N 39 ASN ND2 HD21 sing N N 40 ASN ND2 HD22 sing N N 41 ASN OXT HXT sing N N 42 ASP N CA sing N N 43 ASP N H sing N N 44 ASP N H2 sing N N 45 ASP CA C sing N N 46 ASP CA CB sing N N 47 ASP CA HA sing N N 48 ASP C O doub N N 49 ASP C OXT sing N N 50 ASP CB CG sing N N 51 ASP CB HB2 sing N N 52 ASP CB HB3 sing N N 53 ASP CG OD1 doub N N 54 ASP CG OD2 sing N N 55 ASP OD2 HD2 sing N N 56 ASP OXT HXT sing N N 57 CYS N CA sing N N 58 CYS N H sing N N 59 CYS N H2 sing N N 60 CYS CA C sing N N 61 CYS CA CB sing N N 62 CYS CA HA sing N N 63 CYS C O doub N N 64 CYS C OXT sing N N 65 CYS CB SG sing N N 66 CYS CB HB2 sing N N 67 CYS CB HB3 sing N N 68 CYS SG HG sing N N 69 CYS OXT HXT sing N N 70 GLN N CA sing N N 71 GLN N H sing N N 72 GLN N H2 sing N N 73 GLN CA C sing N N 74 GLN CA CB sing N N 75 GLN CA HA sing N N 76 GLN C O doub N N 77 GLN C OXT sing N N 78 GLN CB CG sing N N 79 GLN CB HB2 sing N N 80 GLN CB HB3 sing N N 81 GLN CG CD sing N N 82 GLN CG HG2 sing N N 83 GLN CG HG3 sing N N 84 GLN CD OE1 doub N N 85 GLN CD NE2 sing N N 86 GLN NE2 HE21 sing N N 87 GLN NE2 HE22 sing N N 88 GLN OXT HXT sing N N 89 GLU N CA sing N N 90 GLU N H sing N N 91 GLU N H2 sing N N 92 GLU CA C sing N N 93 GLU CA CB sing N N 94 GLU CA HA sing N N 95 GLU C O doub N N 96 GLU C OXT sing N N 97 GLU CB CG sing N N 98 GLU CB HB2 sing N N 99 GLU CB HB3 sing N N 100 GLU CG CD sing N N 101 GLU CG HG2 sing N N 102 GLU CG HG3 sing N N 103 GLU CD OE1 doub N N 104 GLU CD OE2 sing N N 105 GLU OE2 HE2 sing N N 106 GLU OXT HXT sing N N 107 GLY N CA sing N N 108 GLY N H sing N N 109 GLY N H2 sing N N 110 GLY CA C sing N N 111 GLY CA HA2 sing N N 112 GLY CA HA3 sing N N 113 GLY C O doub N N 114 GLY C OXT sing N N 115 GLY OXT HXT sing N N 116 HIS N CA sing N N 117 HIS N H sing N N 118 HIS N H2 sing N N 119 HIS CA C sing N N 120 HIS CA CB sing N N 121 HIS CA HA sing N N 122 HIS C O doub N N 123 HIS C OXT sing N N 124 HIS CB CG sing N N 125 HIS CB HB2 sing N N 126 HIS CB HB3 sing N N 127 HIS CG ND1 sing Y N 128 HIS CG CD2 doub Y N 129 HIS ND1 CE1 doub Y N 130 HIS ND1 HD1 sing N N 131 HIS CD2 NE2 sing Y N 132 HIS CD2 HD2 sing N N 133 HIS CE1 NE2 sing Y N 134 HIS CE1 HE1 sing N N 135 HIS NE2 HE2 sing N N 136 HIS OXT HXT sing N N 137 ILE N CA sing N N 138 ILE N H sing N N 139 ILE N H2 sing N N 140 ILE CA C sing N N 141 ILE CA CB sing N N 142 ILE CA HA sing N N 143 ILE C O doub N N 144 ILE C OXT sing N N 145 ILE CB CG1 sing N N 146 ILE CB CG2 sing N N 147 ILE CB HB sing N N 148 ILE CG1 CD1 sing N N 149 ILE CG1 HG12 sing N N 150 ILE CG1 HG13 sing N N 151 ILE CG2 HG21 sing N N 152 ILE CG2 HG22 sing N N 153 ILE CG2 HG23 sing N N 154 ILE CD1 HD11 sing N N 155 ILE CD1 HD12 sing N N 156 ILE CD1 HD13 sing N N 157 ILE OXT HXT sing N N 158 LEU N CA sing N N 159 LEU N H sing N N 160 LEU N H2 sing N N 161 LEU CA C sing N N 162 LEU CA CB sing N N 163 LEU CA HA sing N N 164 LEU C O doub N N 165 LEU C OXT sing N N 166 LEU CB CG sing N N 167 LEU CB HB2 sing N N 168 LEU CB HB3 sing N N 169 LEU CG CD1 sing N N 170 LEU CG CD2 sing N N 171 LEU CG HG sing N N 172 LEU CD1 HD11 sing N N 173 LEU CD1 HD12 sing N N 174 LEU CD1 HD13 sing N N 175 LEU CD2 HD21 sing N N 176 LEU CD2 HD22 sing N N 177 LEU CD2 HD23 sing N N 178 LEU OXT HXT sing N N 179 LYS N CA sing N N 180 LYS N H sing N N 181 LYS N H2 sing N N 182 LYS CA C sing N N 183 LYS CA CB sing N N 184 LYS CA HA sing N N 185 LYS C O doub N N 186 LYS C OXT sing N N 187 LYS CB CG sing N N 188 LYS CB HB2 sing N N 189 LYS CB HB3 sing N N 190 LYS CG CD sing N N 191 LYS CG HG2 sing N N 192 LYS CG HG3 sing N N 193 LYS CD CE sing N N 194 LYS CD HD2 sing N N 195 LYS CD HD3 sing N N 196 LYS CE NZ sing N N 197 LYS CE HE2 sing N N 198 LYS CE HE3 sing N N 199 LYS NZ HZ1 sing N N 200 LYS NZ HZ2 sing N N 201 LYS NZ HZ3 sing N N 202 LYS OXT HXT sing N N 203 PHE N CA sing N N 204 PHE N H sing N N 205 PHE N H2 sing N N 206 PHE CA C sing N N 207 PHE CA CB sing N N 208 PHE CA HA sing N N 209 PHE C O doub N N 210 PHE C OXT sing N N 211 PHE CB CG sing N N 212 PHE CB HB2 sing N N 213 PHE CB HB3 sing N N 214 PHE CG CD1 doub Y N 215 PHE CG CD2 sing Y N 216 PHE CD1 CE1 sing Y N 217 PHE CD1 HD1 sing N N 218 PHE CD2 CE2 doub Y N 219 PHE CD2 HD2 sing N N 220 PHE CE1 CZ doub Y N 221 PHE CE1 HE1 sing N N 222 PHE CE2 CZ sing Y N 223 PHE CE2 HE2 sing N N 224 PHE CZ HZ sing N N 225 PHE OXT HXT sing N N 226 PRO N CA sing N N 227 PRO N CD sing N N 228 PRO N H sing N N 229 PRO CA C sing N N 230 PRO CA CB sing N N 231 PRO CA HA sing N N 232 PRO C O doub N N 233 PRO C OXT sing N N 234 PRO CB CG sing N N 235 PRO CB HB2 sing N N 236 PRO CB HB3 sing N N 237 PRO CG CD sing N N 238 PRO CG HG2 sing N N 239 PRO CG HG3 sing N N 240 PRO CD HD2 sing N N 241 PRO CD HD3 sing N N 242 PRO OXT HXT sing N N 243 SER N CA sing N N 244 SER N H sing N N 245 SER N H2 sing N N 246 SER CA C sing N N 247 SER CA CB sing N N 248 SER CA HA sing N N 249 SER C O doub N N 250 SER C OXT sing N N 251 SER CB OG sing N N 252 SER CB HB2 sing N N 253 SER CB HB3 sing N N 254 SER OG HG sing N N 255 SER OXT HXT sing N N 256 THR N CA sing N N 257 THR N H sing N N 258 THR N H2 sing N N 259 THR CA C sing N N 260 THR CA CB sing N N 261 THR CA HA sing N N 262 THR C O doub N N 263 THR C OXT sing N N 264 THR CB OG1 sing N N 265 THR CB CG2 sing N N 266 THR CB HB sing N N 267 THR OG1 HG1 sing N N 268 THR CG2 HG21 sing N N 269 THR CG2 HG22 sing N N 270 THR CG2 HG23 sing N N 271 THR OXT HXT sing N N 272 TYR N CA sing N N 273 TYR N H sing N N 274 TYR N H2 sing N N 275 TYR CA C sing N N 276 TYR CA CB sing N N 277 TYR CA HA sing N N 278 TYR C O doub N N 279 TYR C OXT sing N N 280 TYR CB CG sing N N 281 TYR CB HB2 sing N N 282 TYR CB HB3 sing N N 283 TYR CG CD1 doub Y N 284 TYR CG CD2 sing Y N 285 TYR CD1 CE1 sing Y N 286 TYR CD1 HD1 sing N N 287 TYR CD2 CE2 doub Y N 288 TYR CD2 HD2 sing N N 289 TYR CE1 CZ doub Y N 290 TYR CE1 HE1 sing N N 291 TYR CE2 CZ sing Y N 292 TYR CE2 HE2 sing N N 293 TYR CZ OH sing N N 294 TYR OH HH sing N N 295 TYR OXT HXT sing N N 296 VAL N CA sing N N 297 VAL N H sing N N 298 VAL N H2 sing N N 299 VAL CA C sing N N 300 VAL CA CB sing N N 301 VAL CA HA sing N N 302 VAL C O doub N N 303 VAL C OXT sing N N 304 VAL CB CG1 sing N N 305 VAL CB CG2 sing N N 306 VAL CB HB sing N N 307 VAL CG1 HG11 sing N N 308 VAL CG1 HG12 sing N N 309 VAL CG1 HG13 sing N N 310 VAL CG2 HG21 sing N N 311 VAL CG2 HG22 sing N N 312 VAL CG2 HG23 sing N N 313 VAL OXT HXT sing N N 314 # _em_admin.current_status REL _em_admin.deposition_date 2024-05-22 _em_admin.deposition_site RCSB _em_admin.entry_id 9BXQ _em_admin.last_update 2024-08-14 _em_admin.map_release_date 2024-08-14 _em_admin.title 'Paired Helical Filaments purified from Down Syndrome individual brain tissue applied to graphene oxide antibody affinity grids' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C1 _em_helical_entity.angular_rotation_per_subunit 179.5 _em_helical_entity.axial_rise_per_subunit 2.37 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 56 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_slit_width 20 _em_imaging_optics.energyfilter_name 'GIF Bioquantum' _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.phase_plate ? _em_imaging_optics.sph_aberration_corrector ? _em_imaging_optics.details ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? ? ? 'MODEL REFINEMENT' ? 2 ? ? ? PHENIX 1.20.1_4487: 'IMAGE ACQUISITION' ? 3 ? ? 1 ? ? MASKING ? 4 ? ? ? ? ? 'CTF CORRECTION' ? 5 1 ? ? ? ? 'LAYERLINE INDEXING' ? 6 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 7 ? ? ? ? ? 'MODEL FITTING' ? 8 ? ? ? ? ? OTHER ? 9 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? RECONSTRUCTION ? 13 1 ? ? ? ? # _em_specimen.concentration ? _em_specimen.details 'Sarkosyl extraction of insoluble tau from fresh-frozen frontal cortex samples from Down Syndrome individuals' _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number RF1NS133651 _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 9BXQ _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O S # loop_