HEADER TRANSFERASE 23-MAY-24 9BYJ
TITLE CRYSTAL STRUCTURE OF HCK IN COMPLEX WITH THE SRC-FAMILY KINASE
TITLE 2 INHIBITOR A-419259
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE HCK;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: HEMATOPOIETIC CELL KINASE,HEMOPOIETIC CELL KINASE,P59-
COMPND 5 HCK/P60-HCK,P59HCK,P61HCK;
COMPND 6 EC: 2.7.10.2;
COMPND 7 ENGINEERED: YES;
COMPND 8 MUTATION: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: HCK;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 EXPRESSION_SYSTEM_VARIANT: STAR;
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A HCK YEEI
KEYWDS SRC FAMILY KINASE, INHIBITOR, TRANSFERASE INHIBITOR, TYROSINE KINASE,
KEYWDS 2 TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR A.M.SELZER,J.J.ALVARADO,T.E.SMITHGALL
REVDAT 2 30-OCT-24 9BYJ 1 JRNL
REVDAT 1 09-OCT-24 9BYJ 0
JRNL AUTH A.M.SELZER,J.J.ALVARADO,T.E.SMITHGALL
JRNL TITL COCRYSTALLIZATION OF THE SRC-FAMILY KINASE HCK WITH THE
JRNL TITL 2 ATP-SITE INHIBITOR A-419259 STABILIZES AN EXTENDED
JRNL TITL 3 ACTIVATION LOOP CONFORMATION.
JRNL REF BIOCHEMISTRY V. 63 2594 2024
JRNL REFN ISSN 0006-2960
JRNL PMID 39315638
JRNL DOI 10.1021/ACS.BIOCHEM.4C00323
REMARK 2
REMARK 2 RESOLUTION. 1.80 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.20.1_4487
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.51
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1
REMARK 3 NUMBER OF REFLECTIONS : 42703
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.200
REMARK 3 R VALUE (WORKING SET) : 0.199
REMARK 3 FREE R VALUE : 0.219
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.460
REMARK 3 FREE R VALUE TEST SET COUNT : 3764
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 42.5100 - 5.4000 1.00 3006 143 0.1758 0.1741
REMARK 3 2 5.3900 - 4.2800 1.00 3000 140 0.1506 0.1584
REMARK 3 3 4.2800 - 3.7400 1.00 3032 143 0.1403 0.1791
REMARK 3 4 3.7400 - 3.4000 1.00 2994 143 0.1618 0.1923
REMARK 3 5 3.4000 - 3.1600 1.00 2999 146 0.1695 0.2200
REMARK 3 6 3.1600 - 2.9700 1.00 3021 138 0.1876 0.1842
REMARK 3 7 2.9700 - 2.8200 1.00 3020 144 0.1984 0.2300
REMARK 3 8 2.8200 - 2.7000 1.00 3002 144 0.2081 0.2133
REMARK 3 9 2.7000 - 2.6000 1.00 3031 141 0.2078 0.2592
REMARK 3 10 2.6000 - 2.5100 1.00 2982 136 0.2168 0.2308
REMARK 3 11 2.5100 - 2.4300 1.00 3011 138 0.2045 0.2451
REMARK 3 12 2.4300 - 2.3600 1.00 3071 144 0.2154 0.2275
REMARK 3 13 2.3600 - 2.3000 1.00 2965 141 0.2230 0.2584
REMARK 3 14 2.3000 - 2.2400 1.00 3033 142 0.2409 0.2480
REMARK 3 15 2.2400 - 2.1900 1.00 3020 136 0.2388 0.2374
REMARK 3 16 2.1900 - 2.1400 1.00 3022 139 0.2621 0.3308
REMARK 3 17 2.1400 - 2.1000 1.00 3036 142 0.2799 0.3145
REMARK 3 18 2.1000 - 2.0600 1.00 2960 132 0.2773 0.3160
REMARK 3 19 2.0600 - 2.0200 1.00 3044 140 0.2857 0.2567
REMARK 3 20 2.0200 - 1.9900 1.00 3007 139 0.2878 0.2614
REMARK 3 21 1.9900 - 1.9600 1.00 3016 142 0.2986 0.2892
REMARK 3 22 1.9600 - 1.9300 1.00 3028 142 0.3164 0.3175
REMARK 3 23 1.9300 - 1.9000 0.99 2980 142 0.3260 0.3407
REMARK 3 24 1.9000 - 1.8700 0.99 2953 136 0.3342 0.3722
REMARK 3 25 1.8700 - 1.8500 0.98 2987 137 0.3536 0.3514
REMARK 3 26 1.8500 - 1.8200 0.95 2865 129 0.3714 0.3992
REMARK 3 27 1.8200 - 1.8000 0.88 2588 125 0.3839 0.3661
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.10
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.278
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.133
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 33.27
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.67
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.015 3802
REMARK 3 ANGLE : 1.601 5118
REMARK 3 CHIRALITY : 0.097 539
REMARK 3 PLANARITY : 0.030 648
REMARK 3 DIHEDRAL : 16.732 1433
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 9BYJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAY-24.
REMARK 100 THE DEPOSITION ID IS D_1000284334.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 19-JUN-20
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : APS
REMARK 200 BEAMLINE : 23-ID-B
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.03317
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : XSCALE
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44990
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800
REMARK 200 RESOLUTION RANGE LOW (A) : 42.513
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 200 DATA REDUNDANCY : 7.100
REMARK 200 R MERGE (I) : 0.14800
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.5000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86
REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6
REMARK 200 DATA REDUNDANCY IN SHELL : 6.97
REMARK 200 R MERGE FOR SHELL (I) : 2.89800
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.600
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 47.10
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MM TRIS-HCL, PH 8.3, 75 MM NACL, 5%
REMARK 280 GLYCEROL, 2 MM TCEP, 0.1 M SODIUM THIOCYANATE, 10% W/V PEG 3350,
REMARK 280 0.095 MM 7-[TRANS-4-(4-METHYL-1-PIPERAZINYL)CYCLOHEXYL]-5-(4-
REMARK 280 PHENOXYPHENYL)-7H-PYRROLO[2,3-D]PYRIMIDIN-4-AMINE, 0.5 MM N~2~-{
REMARK 280 [2-(2,4-DIFLUOROPHENOXY)PYRIDIN-3-YL]METHYL}-N~4~-
REMARK 280 ISOPROPYLPYRIMIDINE-2,4-DIAMINE,1 % DMSO, VAPOR DIFFUSION,
REMARK 280 SITTING DROP, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.67300
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.39900
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.51250
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.39900
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.67300
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.51250
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 76
REMARK 465 GLY A 77
REMARK 465 HIS A 78
REMARK 465 HIS A 79
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 HIS A 80 CG ND1 CD2 CE1 NE2
REMARK 470 HIS A 81 CG ND1 CD2 CE1 NE2
REMARK 470 ILE A 84 CD1
REMARK 470 GLU A 98 CG CD OE1 OE2
REMARK 470 GLN A 103 CD OE1 NE2
REMARK 470 GLU A 112 CG CD OE1 OE2
REMARK 470 LYS A 120 CG CD CE NZ
REMARK 470 ARG A 127 CG CD NE CZ NH1 NH2
REMARK 470 LYS A 181 CD CE NZ
REMARK 470 ARG A 194 CD NE CZ NH1 NH2
REMARK 470 LYS A 203 CD CE NZ
REMARK 470 GLN A 251 CG CD OE1 NE2
REMARK 470 GLU A 265 CG CD OE1 OE2
REMARK 470 LYS A 271 CE NZ
REMARK 470 LYS A 331 CD CE NZ
REMARK 470 GLN A 379 CD OE1 NE2
REMARK 470 LYS A 500 CE NZ
REMARK 470 THR A 523 OG1 CG2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION
REMARK 500 MET A 246 C MET A 246 O 0.136
REMARK 500 SER A 367 C SER A 367 O 0.124
REMARK 500 ARG A 380 C ARG A 380 O 0.131
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 PTR A 527 O - C - N ANGL. DEV. = -15.8 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 HIS A 96 -146.69 -105.61
REMARK 500 SER A 114 50.85 -109.74
REMARK 500 ARG A 127 -8.78 63.37
REMARK 500 SER A 242 -89.42 -103.47
REMARK 500 ALA A 259 68.46 -119.55
REMARK 500 TRP A 260 -63.62 -90.59
REMARK 500 LYS A 288 6.39 59.56
REMARK 500 THR A 330 48.53 -85.58
REMARK 500 ARG A 385 -16.79 88.73
REMARK 500 ASP A 386 58.44 -148.15
REMARK 500 GLU A 524 -157.92 59.40
REMARK 500 SER A 525 -29.52 65.27
REMARK 500 GLN A 526 -67.35 70.43
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: PLANAR GROUPS
REMARK 500
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS
REMARK 500 AN RMSD GREATER THAN THIS VALUE
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI RMS TYPE
REMARK 500 ARG A 122 0.12 SIDE CHAIN
REMARK 500 ARG A 205 0.29 SIDE CHAIN
REMARK 500 ARG A 217 0.13 SIDE CHAIN
REMARK 500 ARG A 264 0.08 SIDE CHAIN
REMARK 500 ARG A 380 0.16 SIDE CHAIN
REMARK 500 ARG A 419 0.10 SIDE CHAIN
REMARK 500 ARG A 506 0.10 SIDE CHAIN
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY
REMARK 500
REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY
REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER
REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME;
REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 500 I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI ANGLE
REMARK 500 PTR A 527 -25.33
REMARK 500
REMARK 500 REMARK: NULL
DBREF 9BYJ A 84 531 UNP P08631 HCK_HUMAN 81 526
SEQADV 9BYJ MET A 76 UNP P08631 EXPRESSION TAG
SEQADV 9BYJ GLY A 77 UNP P08631 EXPRESSION TAG
SEQADV 9BYJ HIS A 78 UNP P08631 EXPRESSION TAG
SEQADV 9BYJ HIS A 79 UNP P08631 EXPRESSION TAG
SEQADV 9BYJ HIS A 80 UNP P08631 EXPRESSION TAG
SEQADV 9BYJ HIS A 81 UNP P08631 EXPRESSION TAG
SEQADV 9BYJ HIS A 82 UNP P08631 EXPRESSION TAG
SEQADV 9BYJ HIS A 83 UNP P08631 EXPRESSION TAG
SEQADV 9BYJ GLU A 528 UNP P08631 GLN 523 ENGINEERED MUTATION
SEQADV 9BYJ GLU A 529 UNP P08631 GLN 524 ENGINEERED MUTATION
SEQADV 9BYJ ILE A 530 UNP P08631 GLN 525 ENGINEERED MUTATION
SEQRES 1 A 454 MET GLY HIS HIS HIS HIS HIS HIS ILE ILE VAL VAL ALA
SEQRES 2 A 454 LEU TYR ASP TYR GLU ALA ILE HIS HIS GLU ASP LEU SER
SEQRES 3 A 454 PHE GLN LYS GLY ASP GLN MET VAL VAL LEU GLU GLU SER
SEQRES 4 A 454 GLY GLU TRP TRP LYS ALA ARG SER LEU ALA THR ARG LYS
SEQRES 5 A 454 GLU GLY TYR ILE PRO SER ASN TYR VAL ALA ARG VAL ASP
SEQRES 6 A 454 SER LEU GLU THR GLU GLU TRP PHE PHE LYS GLY ILE SER
SEQRES 7 A 454 ARG LYS ASP ALA GLU ARG GLN LEU LEU ALA PRO GLY ASN
SEQRES 8 A 454 MET LEU GLY SER PHE MET ILE ARG ASP SER GLU THR THR
SEQRES 9 A 454 LYS GLY SER TYR SER LEU SER VAL ARG ASP TYR ASP PRO
SEQRES 10 A 454 ARG GLN GLY ASP THR VAL LYS HIS TYR LYS ILE ARG THR
SEQRES 11 A 454 LEU ASP ASN GLY GLY PHE TYR ILE SER PRO ARG SER THR
SEQRES 12 A 454 PHE SER THR LEU GLN GLU LEU VAL ASP HIS TYR LYS LYS
SEQRES 13 A 454 GLY ASN ASP GLY LEU CYS GLN LYS LEU SER VAL PRO CYS
SEQRES 14 A 454 MET SER SER LYS PRO GLN LYS PRO TRP GLU LYS ASP ALA
SEQRES 15 A 454 TRP GLU ILE PRO ARG GLU SER LEU LYS LEU GLU LYS LYS
SEQRES 16 A 454 LEU GLY ALA GLY GLN PHE GLY GLU VAL TRP MET ALA THR
SEQRES 17 A 454 TYR ASN LYS HIS THR LYS VAL ALA VAL LYS THR MET LYS
SEQRES 18 A 454 PRO GLY SER MET SER VAL GLU ALA PHE LEU ALA GLU ALA
SEQRES 19 A 454 ASN VAL MET LYS THR LEU GLN HIS ASP LYS LEU VAL LYS
SEQRES 20 A 454 LEU HIS ALA VAL VAL THR LYS GLU PRO ILE TYR ILE ILE
SEQRES 21 A 454 THR GLU PHE MET ALA LYS GLY SER LEU LEU ASP PHE LEU
SEQRES 22 A 454 LYS SER ASP GLU GLY SER LYS GLN PRO LEU PRO LYS LEU
SEQRES 23 A 454 ILE ASP PHE SER ALA GLN ILE ALA GLU GLY MET ALA PHE
SEQRES 24 A 454 ILE GLU GLN ARG ASN TYR ILE HIS ARG ASP LEU ARG ALA
SEQRES 25 A 454 ALA ASN ILE LEU VAL SER ALA SER LEU VAL CYS LYS ILE
SEQRES 26 A 454 ALA ASP PHE GLY LEU ALA ARG VAL ILE GLU ASP ASN GLU
SEQRES 27 A 454 TYR THR ALA ARG GLU GLY ALA LYS PHE PRO ILE LYS TRP
SEQRES 28 A 454 THR ALA PRO GLU ALA ILE ASN PHE GLY SER PHE THR ILE
SEQRES 29 A 454 LYS SER ASP VAL TRP SER PHE GLY ILE LEU LEU MET GLU
SEQRES 30 A 454 ILE VAL THR TYR GLY ARG ILE PRO TYR PRO GLY MET SER
SEQRES 31 A 454 ASN PRO GLU VAL ILE ARG ALA LEU GLU ARG GLY TYR ARG
SEQRES 32 A 454 MET PRO ARG PRO GLU ASN CYS PRO GLU GLU LEU TYR ASN
SEQRES 33 A 454 ILE MET MET ARG CYS TRP LYS ASN ARG PRO GLU GLU ARG
SEQRES 34 A 454 PRO THR PHE GLU TYR ILE GLN SER VAL LEU ASP ASP PHE
SEQRES 35 A 454 TYR THR ALA THR GLU SER GLN PTR GLU GLU ILE PRO
MODRES 9BYJ PTR A 527 TYR MODIFIED RESIDUE
HET PTR A 527 16
HET VSE A 601 36
HET EDO A 602 4
HET DMS A 603 4
HET SCN A 604 3
HET SCN A 605 3
HET SCN A 606 3
HET EDO A 607 4
HET EDO A 608 4
HET SCN A 609 3
HET SCN A 610 3
HET SCN A 611 3
HET SCN A 612 3
HET SCN A 613 3
HET EDO A 614 4
HET SCN A 615 3
HET SCN A 616 3
HET SCN A 617 3
HET SCN A 618 3
HET SCN A 619 3
HET SCN A 620 3
HET SCN A 621 3
HET DMS A 622 4
HET EDO A 623 4
HET EDO A 624 4
HETNAM PTR O-PHOSPHOTYROSINE
HETNAM VSE 7-[TRANS-4-(4-METHYLPIPERAZIN-1-YL)CYCLOHEXYL]-5-(4-
HETNAM 2 VSE PHENOXYPHENYL)-7H-PYRROLO[2,3-D]PYRIMIDIN-4-AMINE
HETNAM EDO 1,2-ETHANEDIOL
HETNAM DMS DIMETHYL SULFOXIDE
HETNAM SCN THIOCYANATE ION
HETSYN PTR PHOSPHONOTYROSINE
HETSYN EDO ETHYLENE GLYCOL
FORMUL 1 PTR C9 H12 N O6 P
FORMUL 2 VSE C29 H34 N6 O
FORMUL 3 EDO 6(C2 H6 O2)
FORMUL 4 DMS 2(C2 H6 O S)
FORMUL 5 SCN 15(C N S 1-)
FORMUL 26 HOH *219(H2 O)
HELIX 1 AA1 SER A 142 GLU A 146 5 5
HELIX 2 AA2 SER A 154 LEU A 163 1 10
HELIX 3 AA3 THR A 222 GLY A 233 1 12
HELIX 4 AA4 PRO A 263 GLU A 265 5 3
HELIX 5 AA5 SER A 303 THR A 316 1 14
HELIX 6 AA6 SER A 345 SER A 352 1 8
HELIX 7 AA7 GLU A 354 GLN A 358 5 5
HELIX 8 AA8 PRO A 359 ARG A 380 1 22
HELIX 9 AA9 ARG A 388 ALA A 390 5 3
HELIX 10 AB1 GLY A 406 ILE A 411 1 6
HELIX 11 AB2 ASN A 414 ARG A 419 1 6
HELIX 12 AB3 PRO A 425 THR A 429 5 5
HELIX 13 AB4 ALA A 430 GLY A 437 1 8
HELIX 14 AB5 THR A 440 THR A 457 1 18
HELIX 15 AB6 SER A 467 ARG A 477 1 11
HELIX 16 AB7 PRO A 488 TRP A 499 1 12
HELIX 17 AB8 ARG A 502 ARG A 506 5 5
HELIX 18 AB9 THR A 508 ASP A 518 1 11
SHEET 1 AA1 5 GLU A 129 PRO A 133 0
SHEET 2 AA1 5 TRP A 118 SER A 123 -1 N ALA A 121 O GLY A 130
SHEET 3 AA1 5 GLN A 107 SER A 114 -1 N VAL A 109 O ARG A 122
SHEET 4 AA1 5 ILE A 85 ALA A 88 -1 N VAL A 86 O MET A 108
SHEET 5 AA1 5 VAL A 137 ARG A 139 -1 O ALA A 138 N VAL A 87
SHEET 1 AA2 6 PHE A 149 PHE A 150 0
SHEET 2 AA2 6 PHE A 172 ASP A 176 1 O ILE A 174 N PHE A 150
SHEET 3 AA2 6 TYR A 184 ASP A 192 -1 O SER A 185 N ARG A 175
SHEET 4 AA2 6 GLY A 196 THR A 206 -1 O GLY A 196 N ASP A 192
SHEET 5 AA2 6 PHE A 212 SER A 215 -1 O TYR A 213 N ARG A 205
SHEET 6 AA2 6 SER A 218 PHE A 220 -1 O SER A 218 N SER A 215
SHEET 1 AA3 5 LEU A 267 ALA A 275 0
SHEET 2 AA3 5 GLY A 279 TYR A 286 -1 O MET A 283 N GLU A 270
SHEET 3 AA3 5 THR A 290 MET A 297 -1 O THR A 290 N TYR A 286
SHEET 4 AA3 5 TYR A 335 THR A 338 -1 O ILE A 336 N LYS A 295
SHEET 5 AA3 5 LEU A 325 VAL A 329 -1 N ALA A 327 O ILE A 337
SHEET 1 AA4 2 ILE A 392 VAL A 394 0
SHEET 2 AA4 2 CYS A 400 ILE A 402 -1 O LYS A 401 N LEU A 393
LINK C GLN A 526 N PTR A 527 1555 1555 1.33
LINK C PTR A 527 N GLU A 528 1555 1555 1.33
CISPEP 1 GLU A 332 PRO A 333 0 -1.82
CRYST1 43.346 85.025 128.798 90.00 90.00 90.00 P 21 21 21 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.023070 0.000000 0.000000 0.00000
SCALE2 0.000000 0.011761 0.000000 0.00000
SCALE3 0.000000 0.000000 0.007764 0.00000