HEADER TRANSFERASE 23-MAY-24 9BYJ TITLE CRYSTAL STRUCTURE OF HCK IN COMPLEX WITH THE SRC-FAMILY KINASE TITLE 2 INHIBITOR A-419259 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE HCK; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HEMATOPOIETIC CELL KINASE,HEMOPOIETIC CELL KINASE,P59- COMPND 5 HCK/P60-HCK,P59HCK,P61HCK; COMPND 6 EC: 2.7.10.2; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HCK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: STAR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A HCK YEEI KEYWDS SRC FAMILY KINASE, INHIBITOR, TRANSFERASE INHIBITOR, TYROSINE KINASE, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.M.SELZER,J.J.ALVARADO,T.E.SMITHGALL REVDAT 2 30-OCT-24 9BYJ 1 JRNL REVDAT 1 09-OCT-24 9BYJ 0 JRNL AUTH A.M.SELZER,J.J.ALVARADO,T.E.SMITHGALL JRNL TITL COCRYSTALLIZATION OF THE SRC-FAMILY KINASE HCK WITH THE JRNL TITL 2 ATP-SITE INHIBITOR A-419259 STABILIZES AN EXTENDED JRNL TITL 3 ACTIVATION LOOP CONFORMATION. JRNL REF BIOCHEMISTRY V. 63 2594 2024 JRNL REFN ISSN 0006-2960 JRNL PMID 39315638 JRNL DOI 10.1021/ACS.BIOCHEM.4C00323 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.51 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 42703 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.460 REMARK 3 FREE R VALUE TEST SET COUNT : 3764 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.5100 - 5.4000 1.00 3006 143 0.1758 0.1741 REMARK 3 2 5.3900 - 4.2800 1.00 3000 140 0.1506 0.1584 REMARK 3 3 4.2800 - 3.7400 1.00 3032 143 0.1403 0.1791 REMARK 3 4 3.7400 - 3.4000 1.00 2994 143 0.1618 0.1923 REMARK 3 5 3.4000 - 3.1600 1.00 2999 146 0.1695 0.2200 REMARK 3 6 3.1600 - 2.9700 1.00 3021 138 0.1876 0.1842 REMARK 3 7 2.9700 - 2.8200 1.00 3020 144 0.1984 0.2300 REMARK 3 8 2.8200 - 2.7000 1.00 3002 144 0.2081 0.2133 REMARK 3 9 2.7000 - 2.6000 1.00 3031 141 0.2078 0.2592 REMARK 3 10 2.6000 - 2.5100 1.00 2982 136 0.2168 0.2308 REMARK 3 11 2.5100 - 2.4300 1.00 3011 138 0.2045 0.2451 REMARK 3 12 2.4300 - 2.3600 1.00 3071 144 0.2154 0.2275 REMARK 3 13 2.3600 - 2.3000 1.00 2965 141 0.2230 0.2584 REMARK 3 14 2.3000 - 2.2400 1.00 3033 142 0.2409 0.2480 REMARK 3 15 2.2400 - 2.1900 1.00 3020 136 0.2388 0.2374 REMARK 3 16 2.1900 - 2.1400 1.00 3022 139 0.2621 0.3308 REMARK 3 17 2.1400 - 2.1000 1.00 3036 142 0.2799 0.3145 REMARK 3 18 2.1000 - 2.0600 1.00 2960 132 0.2773 0.3160 REMARK 3 19 2.0600 - 2.0200 1.00 3044 140 0.2857 0.2567 REMARK 3 20 2.0200 - 1.9900 1.00 3007 139 0.2878 0.2614 REMARK 3 21 1.9900 - 1.9600 1.00 3016 142 0.2986 0.2892 REMARK 3 22 1.9600 - 1.9300 1.00 3028 142 0.3164 0.3175 REMARK 3 23 1.9300 - 1.9000 0.99 2980 142 0.3260 0.3407 REMARK 3 24 1.9000 - 1.8700 0.99 2953 136 0.3342 0.3722 REMARK 3 25 1.8700 - 1.8500 0.98 2987 137 0.3536 0.3514 REMARK 3 26 1.8500 - 1.8200 0.95 2865 129 0.3714 0.3992 REMARK 3 27 1.8200 - 1.8000 0.88 2588 125 0.3839 0.3661 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.278 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.133 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.27 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 3802 REMARK 3 ANGLE : 1.601 5118 REMARK 3 CHIRALITY : 0.097 539 REMARK 3 PLANARITY : 0.030 648 REMARK 3 DIHEDRAL : 16.732 1433 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9BYJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAY-24. REMARK 100 THE DEPOSITION ID IS D_1000284334. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03317 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44990 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 42.513 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.14800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.97 REMARK 200 R MERGE FOR SHELL (I) : 2.89800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MM TRIS-HCL, PH 8.3, 75 MM NACL, 5% REMARK 280 GLYCEROL, 2 MM TCEP, 0.1 M SODIUM THIOCYANATE, 10% W/V PEG 3350, REMARK 280 0.095 MM 7-[TRANS-4-(4-METHYL-1-PIPERAZINYL)CYCLOHEXYL]-5-(4- REMARK 280 PHENOXYPHENYL)-7H-PYRROLO[2,3-D]PYRIMIDIN-4-AMINE, 0.5 MM N~2~-{ REMARK 280 [2-(2,4-DIFLUOROPHENOXY)PYRIDIN-3-YL]METHYL}-N~4~- REMARK 280 ISOPROPYLPYRIMIDINE-2,4-DIAMINE,1 % DMSO, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.67300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.39900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.51250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.39900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.67300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.51250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 76 REMARK 465 GLY A 77 REMARK 465 HIS A 78 REMARK 465 HIS A 79 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 80 CG ND1 CD2 CE1 NE2 REMARK 470 HIS A 81 CG ND1 CD2 CE1 NE2 REMARK 470 ILE A 84 CD1 REMARK 470 GLU A 98 CG CD OE1 OE2 REMARK 470 GLN A 103 CD OE1 NE2 REMARK 470 GLU A 112 CG CD OE1 OE2 REMARK 470 LYS A 120 CG CD CE NZ REMARK 470 ARG A 127 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 181 CD CE NZ REMARK 470 ARG A 194 CD NE CZ NH1 NH2 REMARK 470 LYS A 203 CD CE NZ REMARK 470 GLN A 251 CG CD OE1 NE2 REMARK 470 GLU A 265 CG CD OE1 OE2 REMARK 470 LYS A 271 CE NZ REMARK 470 LYS A 331 CD CE NZ REMARK 470 GLN A 379 CD OE1 NE2 REMARK 470 LYS A 500 CE NZ REMARK 470 THR A 523 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 246 C MET A 246 O 0.136 REMARK 500 SER A 367 C SER A 367 O 0.124 REMARK 500 ARG A 380 C ARG A 380 O 0.131 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PTR A 527 O - C - N ANGL. DEV. = -15.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 96 -146.69 -105.61 REMARK 500 SER A 114 50.85 -109.74 REMARK 500 ARG A 127 -8.78 63.37 REMARK 500 SER A 242 -89.42 -103.47 REMARK 500 ALA A 259 68.46 -119.55 REMARK 500 TRP A 260 -63.62 -90.59 REMARK 500 LYS A 288 6.39 59.56 REMARK 500 THR A 330 48.53 -85.58 REMARK 500 ARG A 385 -16.79 88.73 REMARK 500 ASP A 386 58.44 -148.15 REMARK 500 GLU A 524 -157.92 59.40 REMARK 500 SER A 525 -29.52 65.27 REMARK 500 GLN A 526 -67.35 70.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 122 0.12 SIDE CHAIN REMARK 500 ARG A 205 0.29 SIDE CHAIN REMARK 500 ARG A 217 0.13 SIDE CHAIN REMARK 500 ARG A 264 0.08 SIDE CHAIN REMARK 500 ARG A 380 0.16 SIDE CHAIN REMARK 500 ARG A 419 0.10 SIDE CHAIN REMARK 500 ARG A 506 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PTR A 527 -25.33 REMARK 500 REMARK 500 REMARK: NULL DBREF 9BYJ A 84 531 UNP P08631 HCK_HUMAN 81 526 SEQADV 9BYJ MET A 76 UNP P08631 EXPRESSION TAG SEQADV 9BYJ GLY A 77 UNP P08631 EXPRESSION TAG SEQADV 9BYJ HIS A 78 UNP P08631 EXPRESSION TAG SEQADV 9BYJ HIS A 79 UNP P08631 EXPRESSION TAG SEQADV 9BYJ HIS A 80 UNP P08631 EXPRESSION TAG SEQADV 9BYJ HIS A 81 UNP P08631 EXPRESSION TAG SEQADV 9BYJ HIS A 82 UNP P08631 EXPRESSION TAG SEQADV 9BYJ HIS A 83 UNP P08631 EXPRESSION TAG SEQADV 9BYJ GLU A 528 UNP P08631 GLN 523 ENGINEERED MUTATION SEQADV 9BYJ GLU A 529 UNP P08631 GLN 524 ENGINEERED MUTATION SEQADV 9BYJ ILE A 530 UNP P08631 GLN 525 ENGINEERED MUTATION SEQRES 1 A 454 MET GLY HIS HIS HIS HIS HIS HIS ILE ILE VAL VAL ALA SEQRES 2 A 454 LEU TYR ASP TYR GLU ALA ILE HIS HIS GLU ASP LEU SER SEQRES 3 A 454 PHE GLN LYS GLY ASP GLN MET VAL VAL LEU GLU GLU SER SEQRES 4 A 454 GLY GLU TRP TRP LYS ALA ARG SER LEU ALA THR ARG LYS SEQRES 5 A 454 GLU GLY TYR ILE PRO SER ASN TYR VAL ALA ARG VAL ASP SEQRES 6 A 454 SER LEU GLU THR GLU GLU TRP PHE PHE LYS GLY ILE SER SEQRES 7 A 454 ARG LYS ASP ALA GLU ARG GLN LEU LEU ALA PRO GLY ASN SEQRES 8 A 454 MET LEU GLY SER PHE MET ILE ARG ASP SER GLU THR THR SEQRES 9 A 454 LYS GLY SER TYR SER LEU SER VAL ARG ASP TYR ASP PRO SEQRES 10 A 454 ARG GLN GLY ASP THR VAL LYS HIS TYR LYS ILE ARG THR SEQRES 11 A 454 LEU ASP ASN GLY GLY PHE TYR ILE SER PRO ARG SER THR SEQRES 12 A 454 PHE SER THR LEU GLN GLU LEU VAL ASP HIS TYR LYS LYS SEQRES 13 A 454 GLY ASN ASP GLY LEU CYS GLN LYS LEU SER VAL PRO CYS SEQRES 14 A 454 MET SER SER LYS PRO GLN LYS PRO TRP GLU LYS ASP ALA SEQRES 15 A 454 TRP GLU ILE PRO ARG GLU SER LEU LYS LEU GLU LYS LYS SEQRES 16 A 454 LEU GLY ALA GLY GLN PHE GLY GLU VAL TRP MET ALA THR SEQRES 17 A 454 TYR ASN LYS HIS THR LYS VAL ALA VAL LYS THR MET LYS SEQRES 18 A 454 PRO GLY SER MET SER VAL GLU ALA PHE LEU ALA GLU ALA SEQRES 19 A 454 ASN VAL MET LYS THR LEU GLN HIS ASP LYS LEU VAL LYS SEQRES 20 A 454 LEU HIS ALA VAL VAL THR LYS GLU PRO ILE TYR ILE ILE SEQRES 21 A 454 THR GLU PHE MET ALA LYS GLY SER LEU LEU ASP PHE LEU SEQRES 22 A 454 LYS SER ASP GLU GLY SER LYS GLN PRO LEU PRO LYS LEU SEQRES 23 A 454 ILE ASP PHE SER ALA GLN ILE ALA GLU GLY MET ALA PHE SEQRES 24 A 454 ILE GLU GLN ARG ASN TYR ILE HIS ARG ASP LEU ARG ALA SEQRES 25 A 454 ALA ASN ILE LEU VAL SER ALA SER LEU VAL CYS LYS ILE SEQRES 26 A 454 ALA ASP PHE GLY LEU ALA ARG VAL ILE GLU ASP ASN GLU SEQRES 27 A 454 TYR THR ALA ARG GLU GLY ALA LYS PHE PRO ILE LYS TRP SEQRES 28 A 454 THR ALA PRO GLU ALA ILE ASN PHE GLY SER PHE THR ILE SEQRES 29 A 454 LYS SER ASP VAL TRP SER PHE GLY ILE LEU LEU MET GLU SEQRES 30 A 454 ILE VAL THR TYR GLY ARG ILE PRO TYR PRO GLY MET SER SEQRES 31 A 454 ASN PRO GLU VAL ILE ARG ALA LEU GLU ARG GLY TYR ARG SEQRES 32 A 454 MET PRO ARG PRO GLU ASN CYS PRO GLU GLU LEU TYR ASN SEQRES 33 A 454 ILE MET MET ARG CYS TRP LYS ASN ARG PRO GLU GLU ARG SEQRES 34 A 454 PRO THR PHE GLU TYR ILE GLN SER VAL LEU ASP ASP PHE SEQRES 35 A 454 TYR THR ALA THR GLU SER GLN PTR GLU GLU ILE PRO MODRES 9BYJ PTR A 527 TYR MODIFIED RESIDUE HET PTR A 527 16 HET VSE A 601 36 HET EDO A 602 4 HET DMS A 603 4 HET SCN A 604 3 HET SCN A 605 3 HET SCN A 606 3 HET EDO A 607 4 HET EDO A 608 4 HET SCN A 609 3 HET SCN A 610 3 HET SCN A 611 3 HET SCN A 612 3 HET SCN A 613 3 HET EDO A 614 4 HET SCN A 615 3 HET SCN A 616 3 HET SCN A 617 3 HET SCN A 618 3 HET SCN A 619 3 HET SCN A 620 3 HET SCN A 621 3 HET DMS A 622 4 HET EDO A 623 4 HET EDO A 624 4 HETNAM PTR O-PHOSPHOTYROSINE HETNAM VSE 7-[TRANS-4-(4-METHYLPIPERAZIN-1-YL)CYCLOHEXYL]-5-(4- HETNAM 2 VSE PHENOXYPHENYL)-7H-PYRROLO[2,3-D]PYRIMIDIN-4-AMINE HETNAM EDO 1,2-ETHANEDIOL HETNAM DMS DIMETHYL SULFOXIDE HETNAM SCN THIOCYANATE ION HETSYN PTR PHOSPHONOTYROSINE HETSYN EDO ETHYLENE GLYCOL FORMUL 1 PTR C9 H12 N O6 P FORMUL 2 VSE C29 H34 N6 O FORMUL 3 EDO 6(C2 H6 O2) FORMUL 4 DMS 2(C2 H6 O S) FORMUL 5 SCN 15(C N S 1-) FORMUL 26 HOH *219(H2 O) HELIX 1 AA1 SER A 142 GLU A 146 5 5 HELIX 2 AA2 SER A 154 LEU A 163 1 10 HELIX 3 AA3 THR A 222 GLY A 233 1 12 HELIX 4 AA4 PRO A 263 GLU A 265 5 3 HELIX 5 AA5 SER A 303 THR A 316 1 14 HELIX 6 AA6 SER A 345 SER A 352 1 8 HELIX 7 AA7 GLU A 354 GLN A 358 5 5 HELIX 8 AA8 PRO A 359 ARG A 380 1 22 HELIX 9 AA9 ARG A 388 ALA A 390 5 3 HELIX 10 AB1 GLY A 406 ILE A 411 1 6 HELIX 11 AB2 ASN A 414 ARG A 419 1 6 HELIX 12 AB3 PRO A 425 THR A 429 5 5 HELIX 13 AB4 ALA A 430 GLY A 437 1 8 HELIX 14 AB5 THR A 440 THR A 457 1 18 HELIX 15 AB6 SER A 467 ARG A 477 1 11 HELIX 16 AB7 PRO A 488 TRP A 499 1 12 HELIX 17 AB8 ARG A 502 ARG A 506 5 5 HELIX 18 AB9 THR A 508 ASP A 518 1 11 SHEET 1 AA1 5 GLU A 129 PRO A 133 0 SHEET 2 AA1 5 TRP A 118 SER A 123 -1 N ALA A 121 O GLY A 130 SHEET 3 AA1 5 GLN A 107 SER A 114 -1 N VAL A 109 O ARG A 122 SHEET 4 AA1 5 ILE A 85 ALA A 88 -1 N VAL A 86 O MET A 108 SHEET 5 AA1 5 VAL A 137 ARG A 139 -1 O ALA A 138 N VAL A 87 SHEET 1 AA2 6 PHE A 149 PHE A 150 0 SHEET 2 AA2 6 PHE A 172 ASP A 176 1 O ILE A 174 N PHE A 150 SHEET 3 AA2 6 TYR A 184 ASP A 192 -1 O SER A 185 N ARG A 175 SHEET 4 AA2 6 GLY A 196 THR A 206 -1 O GLY A 196 N ASP A 192 SHEET 5 AA2 6 PHE A 212 SER A 215 -1 O TYR A 213 N ARG A 205 SHEET 6 AA2 6 SER A 218 PHE A 220 -1 O SER A 218 N SER A 215 SHEET 1 AA3 5 LEU A 267 ALA A 275 0 SHEET 2 AA3 5 GLY A 279 TYR A 286 -1 O MET A 283 N GLU A 270 SHEET 3 AA3 5 THR A 290 MET A 297 -1 O THR A 290 N TYR A 286 SHEET 4 AA3 5 TYR A 335 THR A 338 -1 O ILE A 336 N LYS A 295 SHEET 5 AA3 5 LEU A 325 VAL A 329 -1 N ALA A 327 O ILE A 337 SHEET 1 AA4 2 ILE A 392 VAL A 394 0 SHEET 2 AA4 2 CYS A 400 ILE A 402 -1 O LYS A 401 N LEU A 393 LINK C GLN A 526 N PTR A 527 1555 1555 1.33 LINK C PTR A 527 N GLU A 528 1555 1555 1.33 CISPEP 1 GLU A 332 PRO A 333 0 -1.82 CRYST1 43.346 85.025 128.798 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023070 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011761 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007764 0.00000