HEADER DE NOVO PROTEIN 24-MAY-24 9C01 TITLE UIC-1 BOUND TO PHENOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: UIC-1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS SYNTHETIC CONSTRUCT, DE NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.L.HEINZ-KUNERT REVDAT 1 26-NOV-25 9C01 0 JRNL AUTH S.L.HEINZ-KUNERT,A.I.NGUYEN JRNL TITL EVOLVABLE CONFORMATIONAL DIVERSITY IN ASSEMBLIES OF SHORT JRNL TITL 2 PEPTIDES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 0.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 13.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 9665 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.086 REMARK 3 FREE R VALUE : 0.116 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 967 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 13.5500 - 1.5900 1.00 1292 144 0.0929 0.1311 REMARK 3 2 1.5900 - 1.2600 1.00 1243 139 0.0928 0.1157 REMARK 3 3 1.2600 - 1.1000 1.00 1249 137 0.0678 0.0845 REMARK 3 4 1.1000 - 1.0000 1.00 1234 138 0.0674 0.0862 REMARK 3 5 1.0000 - 0.9300 1.00 1229 137 0.0759 0.1063 REMARK 3 6 0.9300 - 0.8700 1.00 1220 135 0.0923 0.1145 REMARK 3 7 0.8700 - 0.8300 1.00 1231 137 0.1066 0.1305 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.034 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 10.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 6.31 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 9.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 218 REMARK 3 ANGLE : 2.286 301 REMARK 3 CHIRALITY : 0.037 13 REMARK 3 PLANARITY : 0.010 35 REMARK 3 DIHEDRAL : 44.219 39 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9C01 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAY-24. REMARK 100 THE DEPOSITION ID IS D_1000282899. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-FEB-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : RIGAKU HYPIX-3000 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO REMARK 200 DATA SCALING SOFTWARE : CRYSALISPRO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9671 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.830 REMARK 200 RESOLUTION RANGE LOW (A) : 13.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 40.1900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 0.86 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 27.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: ACETONITRILE AND WATER, SLOW COOLING, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 6.69450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 219 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH A 220 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH A 221 DISTANCE = 6.70 ANGSTROMS DBREF 9C01 A 2 10 PDB 9C01 9C01 2 10 SEQRES 1 A 9 LEU AIB ALA AIB LEU AIB GLN AIB LEU HET AIB A 3 26 HET AIB A 5 13 HET AIB A 7 26 HET AIB A 9 26 HET I77 A 101 58 HET I6W A 102 90 HET IPH A 103 26 HETNAM AIB ALPHA-AMINOISOBUTYRIC ACID HETNAM I77 5'-(HYDRAZINECARBONYL)[2,2'-BIPYRIDINE]-5-CARBOXAMIDE HETNAM I6W ETHYL 5'-FORMYL[2,2'-BIPYRIDINE]-5-CARBOXYLATE HETNAM IPH PHENOL FORMUL 1 AIB 4(C4 H9 N O2) FORMUL 2 I77 C12 H11 N5 O2 FORMUL 3 I6W C14 H12 N2 O4 FORMUL 4 IPH C6 H6 O FORMUL 5 HOH *21(H2 O) HELIX 1 AA1 LEU A 2 GLN A 8 1 7 LINK C ALEU A 2 N AAIB A 3 1555 1555 1.34 LINK C BLEU A 2 N BAIB A 3 1555 1555 1.33 LINK N ALEU A 2 C02AI6W A 102 1555 1555 1.43 LINK N BLEU A 2 C02BI6W A 102 1555 1555 1.43 LINK C AAIB A 3 N ALA A 4 1555 1555 1.34 LINK C BAIB A 3 N ALA A 4 1555 1555 1.33 LINK C ALA A 4 N AIB A 5 1555 1555 1.33 LINK C AIB A 5 N LEU A 6 1555 1555 1.34 LINK C LEU A 6 N AAIB A 7 1555 1555 1.34 LINK C LEU A 6 N BAIB A 7 1555 1555 1.33 LINK C AAIB A 7 N AGLN A 8 1555 1555 1.33 LINK C BAIB A 7 N BGLN A 8 1555 1555 1.33 LINK C AGLN A 8 N AAIB A 9 1555 1555 1.34 LINK C BGLN A 8 N BAIB A 9 1555 1555 1.34 LINK C AAIB A 9 N ALEU A 10 1555 1555 1.34 LINK C BAIB A 9 N BLEU A 10 1555 1555 1.35 LINK C ALEU A 10 N15AI77 A 101 1555 1555 1.40 LINK C BLEU A 10 N15BI77 A 101 1555 1555 1.40 CRYST1 13.916 13.389 27.419 90.00 98.75 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.071860 0.000000 0.011060 0.00000 SCALE2 0.000000 0.074688 0.000000 0.00000 SCALE3 0.000000 0.000000 0.036901 0.00000 CONECT 1 302 CONECT 2 303 CONECT 5 39 CONECT 6 40 CONECT 39 5 41 51 CONECT 40 6 42 52 CONECT 41 39 43 47 49 CONECT 42 40 44 48 50 CONECT 43 41 45 65 CONECT 44 42 46 65 CONECT 45 43 CONECT 46 44 CONECT 47 41 53 55 57 CONECT 48 42 54 56 58 CONECT 49 41 59 61 63 CONECT 50 42 60 62 64 CONECT 51 39 CONECT 52 40 CONECT 53 47 CONECT 54 48 CONECT 55 47 CONECT 56 48 CONECT 57 47 CONECT 58 48 CONECT 59 49 CONECT 60 50 CONECT 61 49 CONECT 62 50 CONECT 63 49 CONECT 64 50 CONECT 65 43 44 CONECT 67 75 CONECT 75 67 76 81 CONECT 76 75 77 79 80 CONECT 77 76 78 88 CONECT 78 77 CONECT 79 76 82 83 84 CONECT 80 76 85 86 87 CONECT 81 75 CONECT 82 79 CONECT 83 79 CONECT 84 79 CONECT 85 80 CONECT 86 80 CONECT 87 80 CONECT 88 77 CONECT 90 107 108 CONECT 107 90 109 119 CONECT 108 90 110 120 CONECT 109 107 111 115 117 CONECT 110 108 112 116 118 CONECT 111 109 113 133 CONECT 112 110 114 134 CONECT 113 111 CONECT 114 112 CONECT 115 109 121 123 125 CONECT 116 110 122 124 126 CONECT 117 109 127 129 131 CONECT 118 110 128 130 132 CONECT 119 107 CONECT 120 108 CONECT 121 115 CONECT 122 116 CONECT 123 115 CONECT 124 116 CONECT 125 115 CONECT 126 116 CONECT 127 117 CONECT 128 118 CONECT 129 117 CONECT 130 118 CONECT 131 117 CONECT 132 118 CONECT 133 111 CONECT 134 112 CONECT 137 167 CONECT 138 168 CONECT 167 137 169 179 CONECT 168 138 170 180 CONECT 169 167 171 175 177 CONECT 170 168 172 176 178 CONECT 171 169 173 193 CONECT 172 170 174 194 CONECT 173 171 CONECT 174 172 CONECT 175 169 181 183 185 CONECT 176 170 182 184 186 CONECT 177 169 187 189 191 CONECT 178 170 188 190 192 CONECT 179 167 CONECT 180 168 CONECT 181 175 CONECT 182 176 CONECT 183 175 CONECT 184 176 CONECT 185 175 CONECT 186 176 CONECT 187 177 CONECT 188 178 CONECT 189 177 CONECT 190 178 CONECT 191 177 CONECT 192 178 CONECT 193 171 CONECT 194 172 CONECT 197 264 CONECT 198 265 CONECT 232 234 260 270 CONECT 233 235 261 271 CONECT 234 232 236 238 CONECT 235 233 237 239 CONECT 236 234 262 266 CONECT 237 235 263 267 CONECT 238 234 240 272 CONECT 239 235 241 273 CONECT 240 238 254 274 CONECT 241 239 255 275 CONECT 242 244 256 268 CONECT 243 245 257 269 CONECT 244 242 246 250 CONECT 245 243 247 251 CONECT 246 244 248 276 CONECT 247 245 249 277 CONECT 248 246 252 278 CONECT 249 247 253 279 CONECT 250 244 258 280 CONECT 251 245 259 281 CONECT 252 248 254 258 CONECT 253 249 255 259 CONECT 254 240 252 260 CONECT 255 241 253 261 CONECT 256 242 282 284 CONECT 257 243 283 285 CONECT 258 250 252 CONECT 259 251 253 CONECT 260 232 254 CONECT 261 233 255 CONECT 262 236 264 286 CONECT 263 237 265 287 CONECT 264 197 262 288 CONECT 265 198 263 289 CONECT 266 236 CONECT 267 237 CONECT 268 242 CONECT 269 243 CONECT 270 232 CONECT 271 233 CONECT 272 238 CONECT 273 239 CONECT 274 240 CONECT 275 241 CONECT 276 246 CONECT 277 247 CONECT 278 248 CONECT 279 249 CONECT 280 250 CONECT 281 251 CONECT 282 256 CONECT 283 257 CONECT 284 256 CONECT 285 257 CONECT 286 262 CONECT 287 263 CONECT 288 264 CONECT 289 265 CONECT 290 293 308 347 CONECT 291 294 309 348 CONECT 292 295 310 349 CONECT 293 290 296 335 CONECT 294 291 297 336 CONECT 295 292 298 337 CONECT 296 293 299 332 CONECT 297 294 300 333 CONECT 298 295 301 334 CONECT 299 296 314 CONECT 300 297 315 CONECT 301 298 316 CONECT 302 1 305 338 CONECT 303 2 306 339 CONECT 304 307 340 CONECT 305 302 308 311 CONECT 306 303 309 312 CONECT 307 304 310 313 CONECT 308 290 305 350 CONECT 309 291 306 351 CONECT 310 292 307 352 CONECT 311 305 335 353 CONECT 312 306 336 354 CONECT 313 307 337 355 CONECT 314 299 317 356 CONECT 315 300 318 357 CONECT 316 301 319 358 CONECT 317 314 320 329 CONECT 318 315 321 330 CONECT 319 316 322 331 CONECT 320 317 341 344 CONECT 321 318 342 345 CONECT 322 319 343 346 CONECT 323 326 341 359 362 CONECT 324 327 342 360 363 CONECT 325 328 343 361 364 CONECT 326 323 365 368 371 CONECT 327 324 366 369 372 CONECT 328 325 367 370 373 CONECT 329 317 332 374 CONECT 330 318 333 375 CONECT 331 319 334 376 CONECT 332 296 329 377 CONECT 333 297 330 378 CONECT 334 298 331 379 CONECT 335 293 311 CONECT 336 294 312 CONECT 337 295 313 CONECT 338 302 CONECT 339 303 CONECT 340 304 CONECT 341 320 323 CONECT 342 321 324 CONECT 343 322 325 CONECT 344 320 CONECT 345 321 CONECT 346 322 CONECT 347 290 CONECT 348 291 CONECT 349 292 CONECT 350 308 CONECT 351 309 CONECT 352 310 CONECT 353 311 CONECT 354 312 CONECT 355 313 CONECT 356 314 CONECT 357 315 CONECT 358 316 CONECT 359 323 CONECT 360 324 CONECT 361 325 CONECT 362 323 CONECT 363 324 CONECT 364 325 CONECT 365 326 CONECT 366 327 CONECT 367 328 CONECT 368 326 CONECT 369 327 CONECT 370 328 CONECT 371 326 CONECT 372 327 CONECT 373 328 CONECT 374 329 CONECT 375 330 CONECT 376 331 CONECT 377 332 CONECT 378 333 CONECT 379 334 CONECT 380 382 390 392 CONECT 381 383 391 393 CONECT 382 380 384 394 CONECT 383 381 385 395 CONECT 384 382 386 396 CONECT 385 383 387 397 CONECT 386 384 388 398 CONECT 387 385 389 399 CONECT 388 386 390 400 CONECT 389 387 391 401 CONECT 390 380 388 402 CONECT 391 381 389 403 CONECT 392 380 404 CONECT 393 381 405 CONECT 394 382 CONECT 395 383 CONECT 396 384 CONECT 397 385 CONECT 398 386 CONECT 399 387 CONECT 400 388 CONECT 401 389 CONECT 402 390 CONECT 403 391 CONECT 404 392 CONECT 405 393 MASTER 202 0 7 1 0 0 0 6 128 1 281 1 END