HEADER DE NOVO PROTEIN 24-MAY-24 9C03 TITLE UIC-1-A4S/B7M BOUND WITH XYLENES COMPND MOL_ID: 1; COMPND 2 MOLECULE: UIC-1-A4S/B7M; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS SYNTHETIC CONSTRUCT, DE NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.L.HEINZ-KUNERT REVDAT 1 26-NOV-25 9C03 0 JRNL AUTH S.L.HEINZ-KUNERT,A.I.NGUYEN JRNL TITL EVOLVABLE CONFORMATIONAL DIVERSITY IN ASSEMBLIES OF SHORT JRNL TITL 2 PEPTIDES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 0.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.04 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 6835 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.071 REMARK 3 R VALUE (WORKING SET) : 0.070 REMARK 3 FREE R VALUE : 0.079 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.960 REMARK 3 FREE R VALUE TEST SET COUNT : 1282 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 14.0400 - 1.9300 0.98 1310 152 0.0626 0.0735 REMARK 3 2 1.9300 - 1.5400 0.98 1325 134 0.0617 0.0666 REMARK 3 3 1.5300 - 1.3400 0.98 1338 144 0.0675 0.0755 REMARK 3 4 1.3400 - 1.2200 0.97 1277 149 0.0662 0.0668 REMARK 3 5 1.2200 - 1.1300 0.95 1291 136 0.0667 0.0670 REMARK 3 6 1.1300 - 1.0600 0.94 1253 156 0.0728 0.0908 REMARK 3 7 1.0600 - 1.0100 0.96 1284 143 0.0849 0.1042 REMARK 3 8 1.0100 - 0.9700 0.93 1268 125 0.0972 0.1035 REMARK 3 9 0.9700 - 0.9300 0.90 1245 143 0.1140 0.1409 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.045 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 7.313 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 4.69 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 6.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 186 REMARK 3 ANGLE : 1.759 249 REMARK 3 CHIRALITY : 0.060 11 REMARK 3 PLANARITY : 0.009 28 REMARK 3 DIHEDRAL : 33.188 22 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9C03 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAY-24. REMARK 100 THE DEPOSITION ID IS D_1000283294. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-NOV-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.729317 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6835 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.930 REMARK 200 RESOLUTION RANGE LOW (A) : 14.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.7900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 0.96 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 12.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: ACETONITRILE, WATER, SLOW COOLING, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 6.70900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 DBREF 9C03 A 2 10 PDB 9C03 9C03 2 10 SEQRES 1 A 9 LEU AIB SER AIB LEU MET GLN AIB LEU HET AIB A 3 13 HET AIB A 5 13 HET AIB A 9 13 HET I77 A 101 29 HET I6W A 102 30 HET PXY A 103 18 HET 8VH A 104 18 HET OXE A 105 18 HET OXE A 106 18 HET OXE A 107 36 HET 8VH A 108 18 HET 8VH A 109 18 HETNAM AIB ALPHA-AMINOISOBUTYRIC ACID HETNAM I77 5'-(HYDRAZINECARBONYL)[2,2'-BIPYRIDINE]-5-CARBOXAMIDE HETNAM I6W ETHYL 5'-FORMYL[2,2'-BIPYRIDINE]-5-CARBOXYLATE HETNAM PXY PARA-XYLENE HETNAM 8VH 1,3-DIMETHYLBENZENE HETNAM OXE ORTHO-XYLENE FORMUL 1 AIB 3(C4 H9 N O2) FORMUL 2 I77 C12 H11 N5 O2 FORMUL 3 I6W C14 H12 N2 O4 FORMUL 4 PXY C8 H10 FORMUL 5 8VH 3(C8 H10) FORMUL 6 OXE 3(C8 H10) FORMUL 11 HOH *(H2 O) HELIX 1 AA1 LEU A 2 GLN A 8 1 7 LINK C LEU A 2 N AIB A 3 1555 1555 1.33 LINK N LEU A 2 C02 I6W A 102 1555 1555 1.41 LINK C AIB A 3 N SER A 4 1555 1555 1.33 LINK C SER A 4 N AIB A 5 1555 1555 1.34 LINK C AIB A 5 N LEU A 6 1555 1555 1.33 LINK C GLN A 8 N AIB A 9 1555 1555 1.34 LINK C AIB A 9 N LEU A 10 1555 1555 1.34 LINK C LEU A 10 N15 I77 A 101 1555 1555 1.41 CRYST1 13.736 13.418 28.650 90.00 101.55 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.072801 0.000000 0.014878 0.00000 SCALE2 0.000000 0.074527 0.000000 0.00000 SCALE3 0.000000 0.000000 0.035625 0.00000 CONECT 1 210 CONECT 3 20 CONECT 20 3 21 26 CONECT 21 20 22 24 25 CONECT 22 21 23 33 CONECT 23 22 CONECT 24 21 27 28 29 CONECT 25 21 30 31 32 CONECT 26 20 CONECT 27 24 CONECT 28 24 CONECT 29 24 CONECT 30 25 CONECT 31 25 CONECT 32 25 CONECT 33 22 CONECT 35 44 CONECT 44 35 45 50 CONECT 45 44 46 48 49 CONECT 46 45 47 57 CONECT 47 46 CONECT 48 45 51 52 53 CONECT 49 45 54 55 56 CONECT 50 44 CONECT 51 48 CONECT 52 48 CONECT 53 48 CONECT 54 49 CONECT 55 49 CONECT 56 49 CONECT 57 46 CONECT 129 144 CONECT 144 129 145 150 CONECT 145 144 146 148 149 CONECT 146 145 147 157 CONECT 147 146 CONECT 148 145 151 152 153 CONECT 149 145 154 155 156 CONECT 150 144 CONECT 151 148 CONECT 152 148 CONECT 153 148 CONECT 154 149 CONECT 155 149 CONECT 156 149 CONECT 157 146 CONECT 159 193 CONECT 177 178 191 196 CONECT 178 177 179 180 CONECT 179 178 192 194 CONECT 180 178 181 197 CONECT 181 180 188 198 CONECT 182 183 189 195 CONECT 183 182 184 186 CONECT 184 183 185 199 CONECT 185 184 187 200 CONECT 186 183 190 201 CONECT 187 185 188 190 CONECT 188 181 187 191 CONECT 189 182 202 203 CONECT 190 186 187 CONECT 191 177 188 CONECT 192 179 193 204 CONECT 193 159 192 205 CONECT 194 179 CONECT 195 182 CONECT 196 177 CONECT 197 180 CONECT 198 181 CONECT 199 184 CONECT 200 185 CONECT 201 186 CONECT 202 189 CONECT 203 189 CONECT 204 192 CONECT 205 193 CONECT 206 207 212 225 CONECT 207 206 208 221 CONECT 208 207 209 220 CONECT 209 208 214 CONECT 210 1 211 222 CONECT 211 210 212 213 CONECT 212 206 211 226 CONECT 213 211 221 227 CONECT 214 209 215 228 CONECT 215 214 216 219 CONECT 216 215 223 224 CONECT 217 218 223 229 230 CONECT 218 217 231 232 233 CONECT 219 215 220 234 CONECT 220 208 219 235 CONECT 221 207 213 CONECT 222 210 CONECT 223 216 217 CONECT 224 216 CONECT 225 206 CONECT 226 212 CONECT 227 213 CONECT 228 214 CONECT 229 217 CONECT 230 217 CONECT 231 218 CONECT 232 218 CONECT 233 218 CONECT 234 219 CONECT 235 220 CONECT 236 237 241 242 CONECT 237 236 238 244 CONECT 238 237 239 245 CONECT 239 238 240 243 CONECT 240 239 241 246 CONECT 241 236 240 247 CONECT 242 236 248 249 250 CONECT 243 239 251 252 253 CONECT 244 237 CONECT 245 238 CONECT 246 240 CONECT 247 241 CONECT 248 242 CONECT 249 242 CONECT 250 242 CONECT 251 243 CONECT 252 243 CONECT 253 243 CONECT 254 255 259 261 CONECT 255 254 256 262 CONECT 256 255 257 260 CONECT 257 256 258 263 CONECT 258 257 259 264 CONECT 259 254 258 265 CONECT 260 256 266 267 268 CONECT 261 254 269 270 271 CONECT 262 255 CONECT 263 257 CONECT 264 258 CONECT 265 259 CONECT 266 260 CONECT 267 260 CONECT 268 260 CONECT 269 261 CONECT 270 261 CONECT 271 261 CONECT 272 273 277 278 CONECT 273 272 274 279 CONECT 274 273 275 280 CONECT 275 274 276 281 CONECT 276 275 277 282 CONECT 277 272 276 283 CONECT 278 272 284 285 286 CONECT 279 273 287 288 289 CONECT 280 274 CONECT 281 275 CONECT 282 276 CONECT 283 277 CONECT 284 278 CONECT 285 278 CONECT 286 278 CONECT 287 279 CONECT 288 279 CONECT 289 279 CONECT 290 291 295 296 CONECT 291 290 292 297 CONECT 292 291 293 298 CONECT 293 292 294 299 CONECT 294 293 295 300 CONECT 295 290 294 301 CONECT 296 290 302 303 304 CONECT 297 291 305 306 307 CONECT 298 292 CONECT 299 293 CONECT 300 294 CONECT 301 295 CONECT 302 296 CONECT 303 296 CONECT 304 296 CONECT 305 297 CONECT 306 297 CONECT 307 297 CONECT 308 310 318 320 CONECT 309 311 319 321 CONECT 310 308 312 322 CONECT 311 309 313 323 CONECT 312 310 314 324 CONECT 313 311 315 325 CONECT 314 312 316 326 CONECT 315 313 317 327 CONECT 316 314 318 328 CONECT 317 315 319 329 CONECT 318 308 316 330 CONECT 319 309 317 331 CONECT 320 308 332 334 336 CONECT 321 309 333 335 337 CONECT 322 310 338 340 342 CONECT 323 311 339 341 343 CONECT 324 312 CONECT 325 313 CONECT 326 314 CONECT 327 315 CONECT 328 316 CONECT 329 317 CONECT 330 318 CONECT 331 319 CONECT 332 320 CONECT 333 321 CONECT 334 320 CONECT 335 321 CONECT 336 320 CONECT 337 321 CONECT 338 322 CONECT 339 323 CONECT 340 322 CONECT 341 323 CONECT 342 322 CONECT 343 323 CONECT 344 345 349 351 CONECT 345 344 346 352 CONECT 346 345 347 350 CONECT 347 346 348 353 CONECT 348 347 349 354 CONECT 349 344 348 355 CONECT 350 346 356 357 358 CONECT 351 344 359 360 361 CONECT 352 345 CONECT 353 347 CONECT 354 348 CONECT 355 349 CONECT 356 350 CONECT 357 350 CONECT 358 350 CONECT 359 351 CONECT 360 351 CONECT 361 351 CONECT 362 363 367 369 CONECT 363 362 364 370 CONECT 364 363 365 368 CONECT 365 364 366 371 CONECT 366 365 367 372 CONECT 367 362 366 373 CONECT 368 364 374 375 376 CONECT 369 362 377 378 379 CONECT 370 363 CONECT 371 365 CONECT 372 366 CONECT 373 367 CONECT 374 368 CONECT 375 368 CONECT 376 368 CONECT 377 369 CONECT 378 369 CONECT 379 369 MASTER 189 0 12 1 0 0 0 6 160 1 250 1 END