HEADER DE NOVO PROTEIN 24-MAY-24 9C06 TITLE UIC-1 A4S/B5(4-CL)F SOAKED IN EQUIMOLAR ORTHO-, META-, AND PARA-XYLENE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UIC-1-A4S/B5F(4-CL)/B7M; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS SYNTHETIC CONSTRUCT, DE NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.L.HEINZ-KUNERT,A.I.NGUYEN REVDAT 1 26-NOV-25 9C06 0 JRNL AUTH S.L.HEINZ-KUNERT,A.I.NGUYEN JRNL TITL EVOLVABLE CONFORMATIONAL DIVERSITY IN ASSEMBLIES OF SHORT JRNL TITL 2 PEPTIDES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 0.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 9835 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.138 REMARK 3 R VALUE (WORKING SET) : 0.138 REMARK 3 FREE R VALUE : 0.138 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 968 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 10.0700 - 2.6300 0.94 592 592 0.1313 0.1313 REMARK 3 2 2.6300 - 2.0900 0.99 630 630 0.1080 0.1080 REMARK 3 3 2.0900 - 1.8300 1.00 631 631 0.1007 0.1007 REMARK 3 4 1.8300 - 1.6600 0.99 607 607 0.1164 0.1164 REMARK 3 5 1.6600 - 1.5400 1.00 650 650 0.1182 0.1182 REMARK 3 6 1.5400 - 1.4500 1.00 612 612 0.1444 0.1444 REMARK 3 7 1.4500 - 1.3800 1.00 620 620 0.1308 0.1308 REMARK 3 8 1.3800 - 1.3200 0.99 615 615 0.1343 0.1343 REMARK 3 9 1.3200 - 1.2700 1.00 637 637 0.1308 0.1308 REMARK 3 10 1.2700 - 1.2300 1.00 614 614 0.1517 0.1517 REMARK 3 11 1.2300 - 1.1900 1.00 636 636 0.1347 0.1347 REMARK 3 12 1.1900 - 1.1500 0.99 636 636 0.1323 0.1323 REMARK 3 13 1.1500 - 1.1200 0.98 560 560 0.1635 0.1635 REMARK 3 14 1.1200 - 1.1000 0.99 696 696 0.1416 0.1416 REMARK 3 15 1.1000 - 1.0700 1.00 609 609 0.1686 0.1686 REMARK 3 16 1.0700 - 1.0500 1.00 608 608 0.1664 0.1664 REMARK 3 17 1.0500 - 1.0300 1.00 654 654 0.1653 0.1653 REMARK 3 18 1.0300 - 1.0100 1.00 616 616 0.1877 0.1877 REMARK 3 19 1.0100 - 0.9900 1.00 662 662 0.1855 0.1855 REMARK 3 20 0.9900 - 0.9700 1.00 569 569 0.1943 0.1943 REMARK 3 21 0.9700 - 0.9600 1.00 648 648 0.1941 0.1941 REMARK 3 22 0.9600 - 0.9400 1.00 660 660 0.1974 0.1974 REMARK 3 23 0.9400 - 0.9300 0.99 633 633 0.2092 0.2092 REMARK 3 24 0.9300 - 0.9200 0.99 579 579 0.2250 0.2250 REMARK 3 25 0.9200 - 0.9000 0.99 618 618 0.2422 0.2422 REMARK 3 26 0.9000 - 0.8900 0.99 646 646 0.2186 0.2186 REMARK 3 27 0.8900 - 0.8800 0.99 638 638 0.2295 0.2295 REMARK 3 28 0.8800 - 0.8700 0.99 610 610 0.2304 0.2304 REMARK 3 29 0.8700 - 0.8600 1.00 627 627 0.2491 0.2491 REMARK 3 30 0.8600 - 0.8500 1.00 625 625 0.2467 0.2467 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.059 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.017 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 8.05 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 170 REMARK 3 ANGLE : 1.613 228 REMARK 3 CHIRALITY : 0.151 11 REMARK 3 PLANARITY : 0.006 26 REMARK 3 DIHEDRAL : 40.716 24 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9C06 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAY-24. REMARK 100 THE DEPOSITION ID IS D_1000284298. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUN-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.688802 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9835 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.850 REMARK 200 RESOLUTION RANGE LOW (A) : 10.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 35.7300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 0.88 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 14.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: ACETONITRILE, WATER, SLOW COOLING, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 6.73050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 DBREF 9C06 A 2 10 PDB 9C06 9C06 2 10 SEQRES 1 A 9 LEU AIB SER 200 LEU MET GLN AIB LEU HET AIB A 3 13 HET 200 A 5 20 HET AIB A 9 13 HET I77 A 101 29 HET I6W A 102 60 HET OXE A 103 18 HET OXE A 104 18 HET OXE A 105 36 HETNAM AIB ALPHA-AMINOISOBUTYRIC ACID HETNAM 200 4-CHLORO-L-PHENYLALANINE HETNAM I77 5'-(HYDRAZINECARBONYL)[2,2'-BIPYRIDINE]-5-CARBOXAMIDE HETNAM I6W ETHYL 5'-FORMYL[2,2'-BIPYRIDINE]-5-CARBOXYLATE HETNAM OXE ORTHO-XYLENE FORMUL 1 AIB 2(C4 H9 N O2) FORMUL 1 200 C9 H10 CL N O2 FORMUL 2 I77 C12 H11 N5 O2 FORMUL 3 I6W C14 H12 N2 O4 FORMUL 4 OXE 3(C8 H10) HELIX 1 AA1 LEU A 2 GLN A 8 1 7 LINK C LEU A 2 N AIB A 3 1555 1555 1.33 LINK N LEU A 2 C02AI6W A 102 1555 1555 1.43 LINK N LEU A 2 C02BI6W A 102 1555 1555 1.43 LINK C AIB A 3 N ASER A 4 1555 1555 1.32 LINK C AIB A 3 N BSER A 4 1555 1555 1.33 LINK C ASER A 4 N 200 A 5 1555 1555 1.33 LINK C BSER A 4 N 200 A 5 1555 1555 1.33 LINK C 200 A 5 N LEU A 6 1555 1555 1.33 LINK C GLN A 8 N AIB A 9 1555 1555 1.34 LINK C AIB A 9 N LEU A 10 1555 1555 1.34 LINK C LEU A 10 N15 I77 A 101 1555 1555 1.42 CRYST1 13.553 13.461 30.458 90.00 95.00 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.073784 0.000000 0.006455 0.00000 SCALE2 0.000000 0.074289 0.000000 0.00000 SCALE3 0.000000 0.000000 0.032958 0.00000 CONECT 1 198 199 CONECT 3 20 CONECT 20 3 21 26 CONECT 21 20 22 24 25 CONECT 22 21 23 33 34 CONECT 23 22 CONECT 24 21 27 28 29 CONECT 25 21 30 31 32 CONECT 26 20 CONECT 27 24 CONECT 28 24 CONECT 29 24 CONECT 30 25 CONECT 31 25 CONECT 32 25 CONECT 33 22 CONECT 34 22 CONECT 37 55 CONECT 38 55 CONECT 55 37 38 56 67 CONECT 56 55 57 59 68 CONECT 57 56 58 75 CONECT 58 57 CONECT 59 56 60 69 70 CONECT 60 59 61 62 CONECT 61 60 63 71 CONECT 62 60 64 72 CONECT 63 61 65 73 CONECT 64 62 65 74 CONECT 65 63 64 66 CONECT 66 65 CONECT 67 55 CONECT 68 56 CONECT 69 59 CONECT 70 59 CONECT 71 61 CONECT 72 62 CONECT 73 63 CONECT 74 64 CONECT 75 57 CONECT 113 128 CONECT 128 113 129 134 CONECT 129 128 130 132 133 CONECT 130 129 131 141 CONECT 131 130 CONECT 132 129 135 136 137 CONECT 133 129 138 139 140 CONECT 134 128 CONECT 135 132 CONECT 136 132 CONECT 137 132 CONECT 138 133 CONECT 139 133 CONECT 140 133 CONECT 141 130 CONECT 143 177 CONECT 161 162 175 180 CONECT 162 161 163 164 CONECT 163 162 176 178 CONECT 164 162 165 181 CONECT 165 164 172 182 CONECT 166 167 173 179 CONECT 167 166 168 170 CONECT 168 167 169 183 CONECT 169 168 171 184 CONECT 170 167 174 185 CONECT 171 169 172 174 CONECT 172 165 171 175 CONECT 173 166 186 187 CONECT 174 170 171 CONECT 175 161 172 CONECT 176 163 177 188 CONECT 177 143 176 189 CONECT 178 163 CONECT 179 166 CONECT 180 161 CONECT 181 164 CONECT 182 165 CONECT 183 168 CONECT 184 169 CONECT 185 170 CONECT 186 173 CONECT 187 173 CONECT 188 176 CONECT 189 177 CONECT 190 192 202 228 CONECT 191 193 203 229 CONECT 192 190 194 220 CONECT 193 191 195 221 CONECT 194 192 196 218 CONECT 195 193 197 219 CONECT 196 194 206 CONECT 197 195 207 CONECT 198 1 200 222 CONECT 199 1 201 223 CONECT 200 198 202 204 CONECT 201 199 203 205 CONECT 202 190 200 230 CONECT 203 191 201 231 CONECT 204 200 220 232 CONECT 205 201 221 233 CONECT 206 196 208 234 CONECT 207 197 209 235 CONECT 208 206 210 216 CONECT 209 207 211 217 CONECT 210 208 224 226 CONECT 211 209 225 227 CONECT 212 214 224 236 238 CONECT 213 215 225 237 239 CONECT 214 212 240 242 244 CONECT 215 213 241 243 245 CONECT 216 208 218 246 CONECT 217 209 219 247 CONECT 218 194 216 248 CONECT 219 195 217 249 CONECT 220 192 204 CONECT 221 193 205 CONECT 222 198 CONECT 223 199 CONECT 224 210 212 CONECT 225 211 213 CONECT 226 210 CONECT 227 211 CONECT 228 190 CONECT 229 191 CONECT 230 202 CONECT 231 203 CONECT 232 204 CONECT 233 205 CONECT 234 206 CONECT 235 207 CONECT 236 212 CONECT 237 213 CONECT 238 212 CONECT 239 213 CONECT 240 214 CONECT 241 215 CONECT 242 214 CONECT 243 215 CONECT 244 214 CONECT 245 215 CONECT 246 216 CONECT 247 217 CONECT 248 218 CONECT 249 219 CONECT 250 251 255 256 CONECT 251 250 252 257 CONECT 252 251 253 258 CONECT 253 252 254 259 CONECT 254 253 255 260 CONECT 255 250 254 261 CONECT 256 250 262 263 264 CONECT 257 251 265 266 267 CONECT 258 252 CONECT 259 253 CONECT 260 254 CONECT 261 255 CONECT 262 256 CONECT 263 256 CONECT 264 256 CONECT 265 257 CONECT 266 257 CONECT 267 257 CONECT 268 269 273 274 CONECT 269 268 270 275 CONECT 270 269 271 276 CONECT 271 270 272 277 CONECT 272 271 273 278 CONECT 273 268 272 279 CONECT 274 268 280 281 282 CONECT 275 269 283 284 285 CONECT 276 270 CONECT 277 271 CONECT 278 272 CONECT 279 273 CONECT 280 274 CONECT 281 274 CONECT 282 274 CONECT 283 275 CONECT 284 275 CONECT 285 275 CONECT 286 288 296 298 CONECT 287 289 297 299 CONECT 288 286 290 300 CONECT 289 287 291 301 CONECT 290 288 292 302 CONECT 291 289 293 303 CONECT 292 290 294 304 CONECT 293 291 295 305 CONECT 294 292 296 306 CONECT 295 293 297 307 CONECT 296 286 294 308 CONECT 297 287 295 309 CONECT 298 286 310 312 314 CONECT 299 287 311 313 315 CONECT 300 288 316 318 320 CONECT 301 289 317 319 321 CONECT 302 290 CONECT 303 291 CONECT 304 292 CONECT 305 293 CONECT 306 294 CONECT 307 295 CONECT 308 296 CONECT 309 297 CONECT 310 298 CONECT 311 299 CONECT 312 298 CONECT 313 299 CONECT 314 298 CONECT 315 299 CONECT 316 300 CONECT 317 301 CONECT 318 300 CONECT 319 301 CONECT 320 300 CONECT 321 301 MASTER 210 0 8 1 0 0 0 6 133 1 217 1 END