HEADER VIRAL PROTEIN/IMMUNE SYSTEM 28-MAY-24 9C0X TITLE CRYSTAL STRUCTURE OF CHIMERIC HEMAGGLUTININ CH11/1 IN COMPLEX WITH TITLE 2 BROAD PROTECTIVE ANTIBODY 31.B.09 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMAGGLUTININ HA2 SUBUNIT; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ANTIBODY 31.B.09 FAB LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: ANTIBODY 31.B.09 FAB HEAVY CHAIN; COMPND 11 CHAIN: H; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: HEMAGGLUTININ HA1 SUBUNIT; COMPND 15 CHAIN: A; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_TAXID: 11320; SOURCE 4 GENE: HA; SOURCE 5 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 6 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 13 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 20 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 22 MOL_ID: 4; SOURCE 23 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 24 ORGANISM_TAXID: 11320; SOURCE 25 GENE: HA; SOURCE 26 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 27 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 28 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS IMMUNE SYSTEM, VIRAL PROTEIN-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.K.Y.NGUYEN,X.ZHU,I.A.WILSON REVDAT 2 28-MAY-25 9C0X 1 JRNL REVDAT 1 07-MAY-25 9C0X 0 JRNL AUTH Y.T.K.NGUYEN,X.ZHU,J.HAN,A.J.RODRIGUEZ,W.SUN,W.YU,P.PALESE, JRNL AUTH 2 F.KRAMMER,A.B.WARD,I.A.WILSON JRNL TITL STRUCTURAL CHARACTERIZATION OF INFLUENZA GROUP 1 CHIMERIC JRNL TITL 2 HEMAGGLUTININS AS BROAD VACCINE IMMUNOGENS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 122 28122 2025 JRNL REFN ESSN 1091-6490 JRNL PMID 39937865 JRNL DOI 10.1073/PNAS.2416628122 REMARK 2 REMARK 2 RESOLUTION. 4.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.19.2_4158: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 4.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 10839 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.337 REMARK 3 R VALUE (WORKING SET) : 0.335 REMARK 3 FREE R VALUE : 0.382 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.560 REMARK 3 FREE R VALUE TEST SET COUNT : 494 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.8000 - 6.9000 1.00 2651 150 0.2939 0.3927 REMARK 3 2 6.8900 - 5.4800 1.00 2595 110 0.3856 0.3607 REMARK 3 3 5.4700 - 4.7800 1.00 2551 118 0.3707 0.3502 REMARK 3 4 4.7800 - 4.3500 1.00 2548 116 0.3843 0.4006 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.850 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 47.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5815 REMARK 3 ANGLE : 1.034 7878 REMARK 3 CHIRALITY : 0.072 858 REMARK 3 PLANARITY : 0.016 1014 REMARK 3 DIHEDRAL : 12.095 793 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9C0X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAY-24. REMARK 100 THE DEPOSITION ID IS D_1000284516. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10863 REMARK 200 RESOLUTION RANGE HIGH (A) : 4.350 REMARK 200 RESOLUTION RANGE LOW (A) : 48.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 4.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.42 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM PHOSPHATE DIBASIC, 20% REMARK 280 W/V PEG3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 84.52250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.52250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 84.52250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 84.52250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 84.52250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 84.52250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 84.52250 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 84.52250 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 84.52250 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 84.52250 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 84.52250 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 84.52250 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 84.52250 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 84.52250 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 84.52250 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 84.52250 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 84.52250 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 84.52250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, L, H, A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 UNK A 51 REMARK 465 UNK A 52 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 289 O6 NAG A 401 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO H 101 CD PRO H 101 N -0.084 REMARK 500 TYR A 161 CZ TYR A 161 CE2 -0.083 REMARK 500 PRO A 324 CD PRO A 324 N -0.108 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN B 42 CA - CB - CG ANGL. DEV. = -16.0 DEGREES REMARK 500 PHE B 138 N - CA - C ANGL. DEV. = -19.4 DEGREES REMARK 500 PRO L 100 N - CA - C ANGL. DEV. = -21.2 DEGREES REMARK 500 TYR L 101 N - CA - CB ANGL. DEV. = 10.9 DEGREES REMARK 500 LYS H 63 CB - CA - C ANGL. DEV. = -25.3 DEGREES REMARK 500 LEU H 64 N - CA - C ANGL. DEV. = -24.4 DEGREES REMARK 500 THR A 23 O - C - N ANGL. DEV. = 10.2 DEGREES REMARK 500 PRO A 324 C - N - CD ANGL. DEV. = -13.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 28 -163.30 -126.52 REMARK 500 ALA B 35 117.55 -171.19 REMARK 500 MET B 59 -71.75 -98.01 REMARK 500 ASN B 71 -141.47 47.33 REMARK 500 HIS B 72 -90.37 -110.89 REMARK 500 LEU B 73 -0.94 80.66 REMARK 500 LYS B 127 -115.90 56.11 REMARK 500 CYS B 137 158.51 178.77 REMARK 500 LEU L 52 -35.76 -135.32 REMARK 500 ASN L 55 -137.39 48.54 REMARK 500 SER L 70 -166.35 -124.93 REMARK 500 SER H 30 46.18 -104.91 REMARK 500 LYS H 63 36.52 37.83 REMARK 500 LEU H 64 -16.30 -143.18 REMARK 500 GLN H 65 109.68 -57.10 REMARK 500 ASN A 20 -121.99 -124.40 REMARK 500 ASN A 21 -19.20 -145.90 REMARK 500 ASP A 24 130.14 -36.43 REMARK 500 LEU A 30 -73.27 -111.10 REMARK 500 ASN A 33 46.50 34.13 REMARK 500 ASN A 54 -124.55 42.68 REMARK 500 ASP A 63 0.78 -68.54 REMARK 500 ALA A 133a -166.57 -113.02 REMARK 500 CYS A 139 47.98 -105.61 REMARK 500 SER A 146 -167.44 -171.83 REMARK 500 SER A 206 -163.15 -112.65 REMARK 500 SER A 276 -161.29 -100.88 REMARK 500 SER A 291 58.37 -117.51 REMARK 500 ASN A 296 18.43 -150.70 REMARK 500 ARG A 321 108.68 -55.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG L 50 0.25 SIDE CHAIN REMARK 500 ARG L 51 0.29 SIDE CHAIN REMARK 500 ARG H 38 0.12 SIDE CHAIN REMARK 500 ARG H 84 0.10 SIDE CHAIN REMARK 500 ARG H 98 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG C 1 REMARK 610 NAG A 401 DBREF1 9C0X B 10 174 UNP A0A6J3XB93_9INFA DBREF2 9C0X B A0A6J3XB93 354 518 DBREF 9C0X L 1 114 PDB 9C0X 9C0X 1 114 DBREF 9C0X H 1 121 PDB 9C0X 9C0X 1 121 DBREF 9C0X A 10 325 PDB 9C0X 9C0X 10 325 SEQADV 9C0X SER B 175 UNP A0A6J3XB9 EXPRESSION TAG SEQRES 1 B 166 ILE GLU GLY GLY TRP THR GLY MET VAL ASP GLY TRP TYR SEQRES 2 B 166 GLY TYR HIS HIS GLN ASN GLU GLN GLY SER GLY TYR ALA SEQRES 3 B 166 ALA ASP LEU LYS SER THR GLN ASN ALA ILE ASP GLY ILE SEQRES 4 B 166 THR ASN LYS VAL ASN SER VAL ILE GLU LYS MET ASN THR SEQRES 5 B 166 GLN PHE THR ALA VAL GLY LYS GLU PHE ASN HIS LEU GLU SEQRES 6 B 166 LYS ARG ILE GLU ASN LEU ASN LYS LYS VAL ASP ASP GLY SEQRES 7 B 166 PHE LEU ASP ILE TRP THR TYR ASN ALA GLU LEU LEU VAL SEQRES 8 B 166 LEU LEU GLU ASN GLU ARG THR LEU ASP TYR HIS ASP SER SEQRES 9 B 166 ASN VAL LYS ASN LEU TYR GLU LYS VAL ARG SER GLN LEU SEQRES 10 B 166 LYS ASN ASN ALA LYS GLU ILE GLY ASN GLY CYS PHE GLU SEQRES 11 B 166 PHE TYR HIS LYS CYS ASP ASN THR CYS MET GLU SER VAL SEQRES 12 B 166 LYS ASN GLY THR TYR ASP TYR PRO LYS TYR SER GLU GLU SEQRES 13 B 166 ALA LYS LEU ASN ARG GLU GLU ILE ASP SER SEQRES 1 L 114 ASP VAL VAL MET THR GLN SER PRO VAL SER LEU PRO VAL SEQRES 2 L 114 THR LEU GLY GLN PRO ALA SER ILE SER CYS ARG SER SER SEQRES 3 L 114 GLN GLY LEU VAL TYR ILE ASP GLY ASN THR TYR LEU ASN SEQRES 4 L 114 TRP PHE GLN GLN ARG PRO GLY GLN SER PRO ARG ARG LEU SEQRES 5 L 114 ILE TYR ASN VAL PHE THR ARG ASP SER GLY VAL PRO ASP SEQRES 6 L 114 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 L 114 LYS ILE THR THR VAL GLU ALA GLU ASP VAL GLY VAL TYR SEQRES 8 L 114 TYR CYS MET GLN GLY THR HIS TRP PRO TYR THR PHE GLY SEQRES 9 L 114 GLN GLY THR LYS LEU GLU ILE LYS ARG ALA SEQRES 1 H 121 GLN VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 121 PRO GLY ALA SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 H 121 TYR SER PHE SER SER TYR GLY ILE SER TRP VAL ARG GLN SEQRES 4 H 121 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY TRP ILE SER SEQRES 5 H 121 ALA TYR ASN GLY ASN THR ASN TYR ALA GLN LYS LEU GLN SEQRES 6 H 121 GLY ARG VAL THR MET THR THR ASP THR SER THR SER THR SEQRES 7 H 121 ALA TYR MET GLU LEU ARG SER LEU ARG SER ASP ASP THR SEQRES 8 H 121 ALA VAL PHE TYR CYS ALA ARG ASP ARG PRO HIS ILE LEU SEQRES 9 H 121 THR GLY PHE ASP PHE ASP TYR TRP GLY GLN GLY THR LEU SEQRES 10 H 121 VAL THR VAL SER SEQRES 1 A 322 GLY ASP THR LEU CYS ILE GLY TYR HIS ALA ASN ASN SER SEQRES 2 A 322 THR ASP THR VAL ASP THR LEU LEU GLU LYS ASN VAL THR SEQRES 3 A 322 VAL THR HIS SER VAL ASN LEU LEU GLU ASP LYS HIS ASN SEQRES 4 A 322 GLY LYS UNK UNK ILE ASN GLY LYS GLN PRO ILE SER LEU SEQRES 5 A 322 GLY ASP CYS SER PHE ALA GLY TRP ILE LEU GLY ASN PRO SEQRES 6 A 322 MET CYS ASP ASP LEU ILE GLY LYS THR SER TRP SER TYR SEQRES 7 A 322 ILE VAL GLU LYS PRO ASN PRO THR ASN GLY ILE CYS TYR SEQRES 8 A 322 PRO GLY THR LEU GLU ASP GLU GLU GLU LEU ARG LEU LYS SEQRES 9 A 322 PHE SER GLY VAL LEU GLU PHE SER LYS PHE GLU ALA PHE SEQRES 10 A 322 THR SER ASN GLY TRP GLY ALA VAL ASN SER GLY ALA GLY SEQRES 11 A 322 VAL THR ALA ALA CYS LYS PHE GLY SER SER ASN SER PHE SEQRES 12 A 322 PHE ARG ASN MET VAL TRP LEU ILE HIS GLN SER GLY THR SEQRES 13 A 322 TYR PRO VAL ILE LYS ARG THR PHE ASN ASN THR LYS GLY SEQRES 14 A 322 ARG ASP VAL LEU ILE VAL TRP GLY ILE HIS HIS PRO ALA SEQRES 15 A 322 THR LEU LYS GLU HIS GLN ASP LEU TYR LYS LYS ASP SER SEQRES 16 A 322 SER TYR VAL ALA VAL GLY SER GLU THR TYR ASN ARG ARG SEQRES 17 A 322 PHE THR PRO GLU ILE SER THR ARG PRO ASN VAL ASN GLY SEQRES 18 A 322 GLN ALA GLY ARG MET THR PHE TYR TRP THR MET VAL LYS SEQRES 19 A 322 PRO GLY GLU SER ILE THR PHE GLU SER ASN GLY ALA PHE SEQRES 20 A 322 LEU ALA PRO ARG TYR ALA PHE GLU ILE VAL SER VAL GLY SEQRES 21 A 322 ASN GLY LYS LEU PHE ARG SER GLU LEU SER ILE GLU SER SEQRES 22 A 322 CYS ASN THR THR CYS GLN THR PRO LYS GLY ALA ILE ASN SEQRES 23 A 322 THR SER LEU PRO PHE GLN ASN ILE HIS PRO ILE THR ILE SEQRES 24 A 322 GLY LYS CYS PRO LYS TYR VAL LYS SER THR LYS LEU ARG SEQRES 25 A 322 LEU ALA THR GLY LEU ARG ASN VAL PRO SER HET NAG C 1 14 HET NAG C 2 14 HET NAG A 401 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 5 NAG 3(C8 H15 N O6) HELIX 1 AA1 ASP B 37 LYS B 58 1 22 HELIX 2 AA2 ASN B 79 LYS B 127 1 49 HELIX 3 AA3 ASP B 145 ASN B 154 1 10 HELIX 4 AA4 ASP B 158 ASP B 174 1 17 HELIX 5 AA5 SER A 65 GLY A 72 1 8 HELIX 6 AA6 ASN A 73 LEU A 79 5 7 HELIX 7 AA7 ASP A 104 SER A 113 1 10 HELIX 8 AA8 THR A 187 LYS A 196 1 10 SHEET 1 AA1 3 SER B 32 ALA B 36 0 SHEET 2 AA1 3 TYR B 22 GLN B 27 -1 N TYR B 24 O ALA B 35 SHEET 3 AA1 3 THR A 12 TYR A 17 -1 O CYS A 14 N HIS B 25 SHEET 1 AA2 2 ALA B 130 GLU B 132 0 SHEET 2 AA2 2 PHE B 138 PHE B 140 -1 O GLU B 139 N LYS B 131 SHEET 1 AA3 4 THR L 5 GLN L 6 0 SHEET 2 AA3 4 ALA L 19 ARG L 24 -1 O ARG L 24 N THR L 5 SHEET 3 AA3 4 ASP L 75 ILE L 80 -1 O PHE L 76 N CYS L 23 SHEET 4 AA3 4 PHE L 67 GLY L 69 -1 N SER L 68 O LYS L 79 SHEET 1 AA4 5 SER L 10 PRO L 12 0 SHEET 2 AA4 5 GLY L 106 GLU L 110 1 O LYS L 108 N LEU L 11 SHEET 3 AA4 5 VAL L 90 TYR L 92 -1 N TYR L 91 O THR L 107 SHEET 4 AA4 5 PHE L 41 GLN L 43 -1 N GLN L 43 O VAL L 90 SHEET 5 AA4 5 ARG L 50 ARG L 51 -1 O ARG L 50 N GLN L 42 SHEET 1 AA5 2 ILE L 53 TYR L 54 0 SHEET 2 AA5 2 THR L 58 ARG L 59 -1 O THR L 58 N TYR L 54 SHEET 1 AA6 4 LEU H 4 GLN H 6 0 SHEET 2 AA6 4 VAL H 18 ALA H 24 -1 O LYS H 23 N VAL H 5 SHEET 3 AA6 4 THR H 78 LEU H 83 -1 O MET H 81 N VAL H 20 SHEET 4 AA6 4 VAL H 68 ASP H 73 -1 N ASP H 73 O THR H 78 SHEET 1 AA7 6 GLU H 10 LYS H 12 0 SHEET 2 AA7 6 THR H 116 VAL H 120 1 O THR H 119 N LYS H 12 SHEET 3 AA7 6 ALA H 92 ASP H 99 -1 N PHE H 94 O THR H 116 SHEET 4 AA7 6 GLY H 33 ALA H 40 -1 N GLN H 39 O VAL H 93 SHEET 5 AA7 6 GLN H 43 SER H 52 -1 O GLY H 49 N TRP H 36 SHEET 6 AA7 6 THR H 58 TYR H 60 -1 O ASN H 59 N TRP H 50 SHEET 1 AA8 2 THR A 25 VAL A 26 0 SHEET 2 AA8 2 VAL A 34 THR A 35 -1 O VAL A 34 N VAL A 26 SHEET 1 AA9 2 SER A 39 ASN A 41 0 SHEET 2 AA9 2 ARG A 315 ALA A 317 -1 O LEU A 316 N VAL A 40 SHEET 1 AB1 2 LEU A 43 GLU A 44 0 SHEET 2 AB1 2 PHE A 294 GLN A 295 1 O PHE A 294 N GLU A 44 SHEET 1 AB2 3 ILE A 59 SER A 60 0 SHEET 2 AB2 3 ILE A 87 GLU A 89 1 O VAL A 88 N ILE A 59 SHEET 3 AB2 3 PHE A 268 ARG A 269 1 O PHE A 268 N GLU A 89 SHEET 1 AB3 5 GLY A 100 LEU A 102 0 SHEET 2 AB3 5 ARG A 229 VAL A 237 1 O PHE A 232 N THR A 101 SHEET 3 AB3 5 VAL A 176 HIS A 184 -1 N VAL A 176 O VAL A 237 SHEET 4 AB3 5 TYR A 256 VAL A 263 -1 O PHE A 258 N LEU A 177 SHEET 5 AB3 5 VAL A 115 GLU A 119 -1 N SER A 116C O GLU A 259 SHEET 1 AB4 5 GLY A 100 LEU A 102 0 SHEET 2 AB4 5 ARG A 229 VAL A 237 1 O PHE A 232 N THR A 101 SHEET 3 AB4 5 VAL A 176 HIS A 184 -1 N VAL A 176 O VAL A 237 SHEET 4 AB4 5 PHE A 251 PRO A 254 -1 O LEU A 252 N GLY A 181 SHEET 5 AB4 5 MET A 151 TRP A 153 -1 N VAL A 152 O ALA A 253 SHEET 1 AB5 2 THR A 136 PHE A 141 0 SHEET 2 AB5 2 SER A 144 SER A 146 -1 O SER A 146 N THR A 136 SHEET 1 AB6 4 ILE A 164 ASN A 169 0 SHEET 2 AB6 4 SER A 242 SER A 247 -1 O SER A 247 N ILE A 164 SHEET 3 AB6 4 VAL A 202 GLY A 205 -1 N ALA A 203 O GLU A 246 SHEET 4 AB6 4 ASN A 210 PHE A 213 -1 O PHE A 213 N VAL A 202 SSBOND 1 CYS B 137 CYS A 14 1555 1555 2.02 SSBOND 2 CYS B 144 CYS B 148 1555 1555 2.03 SSBOND 3 CYS L 23 CYS L 93 1555 1555 2.03 SSBOND 4 CYS H 22 CYS H 96 1555 1555 2.03 SSBOND 5 CYS A 281 CYS A 305 1555 1555 2.03 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 CRYST1 169.045 169.045 169.045 90.00 90.00 90.00 P 21 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005916 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005916 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005916 0.00000 TER 1347 SER B 175 TER 2237 ALA L 114 TER 3175 SER H 121 TER 5661 SER A 325 HETATM 5662 C1 NAG C 1 -7.188 8.490 -35.488 1.00 30.00 C HETATM 5663 C2 NAG C 1 -6.773 9.862 -34.956 1.00 30.00 C HETATM 5664 C3 NAG C 1 -5.509 10.338 -35.664 1.00 30.00 C HETATM 5665 C4 NAG C 1 -4.407 9.288 -35.599 1.00 30.00 C HETATM 5666 C5 NAG C 1 -4.944 7.932 -36.048 1.00 30.00 C HETATM 5667 C6 NAG C 1 -3.951 6.812 -35.847 1.00 30.00 C HETATM 5668 C7 NAG C 1 -8.219 11.599 -34.052 1.00 30.00 C HETATM 5669 C8 NAG C 1 -7.994 11.018 -32.689 1.00 30.00 C HETATM 5670 N2 NAG C 1 -7.828 10.845 -35.080 1.00 30.00 N HETATM 5671 O3 NAG C 1 -5.087 11.558 -35.069 1.00 30.00 O HETATM 5672 O4 NAG C 1 -3.328 9.665 -36.452 1.00 30.00 O HETATM 5673 O5 NAG C 1 -6.113 7.591 -35.279 1.00 30.00 O HETATM 5674 O6 NAG C 1 -2.688 7.133 -36.425 1.00 30.00 O HETATM 5675 O7 NAG C 1 -8.728 12.703 -34.213 1.00 30.00 O HETATM 5676 C1 NAG C 2 -3.815 10.168 -37.714 1.00 30.00 C HETATM 5677 C2 NAG C 2 -3.150 11.486 -38.115 1.00 30.00 C HETATM 5678 C3 NAG C 2 -1.836 11.225 -38.843 1.00 30.00 C HETATM 5679 C4 NAG C 2 -1.643 9.737 -39.099 1.00 30.00 C HETATM 5680 C5 NAG C 2 -2.914 9.161 -39.711 1.00 30.00 C HETATM 5681 C6 NAG C 2 -2.765 7.710 -40.097 1.00 30.00 C HETATM 5682 C7 NAG C 2 -5.287 12.579 -38.551 1.00 30.00 C HETATM 5683 C8 NAG C 2 -6.371 12.103 -39.468 1.00 30.00 C HETATM 5684 N2 NAG C 2 -4.038 12.295 -38.923 1.00 30.00 N HETATM 5685 O3 NAG C 2 -0.766 11.750 -38.070 1.00 30.00 O HETATM 5686 O4 NAG C 2 -0.562 9.550 -40.008 1.00 30.00 O HETATM 5687 O5 NAG C 2 -3.994 9.223 -38.759 1.00 30.00 O HETATM 5688 O6 NAG C 2 -2.139 6.970 -39.054 1.00 30.00 O HETATM 5689 O7 NAG C 2 -5.532 13.195 -37.518 1.00 30.00 O HETATM 5690 C1 NAG A 401 -14.257 -3.555 -51.665 1.00 30.00 C HETATM 5691 C2 NAG A 401 -15.043 -2.736 -52.691 1.00 30.00 C HETATM 5692 C3 NAG A 401 -15.899 -1.703 -51.966 1.00 30.00 C HETATM 5693 C4 NAG A 401 -16.286 -2.208 -50.583 1.00 30.00 C HETATM 5694 C5 NAG A 401 -15.035 -2.386 -49.728 1.00 30.00 C HETATM 5695 C6 NAG A 401 -15.175 -3.491 -48.708 1.00 30.00 C HETATM 5696 C7 NAG A 401 -12.905 -1.840 -53.551 1.00 30.00 C HETATM 5697 C8 NAG A 401 -12.537 -0.506 -52.977 1.00 30.00 C HETATM 5698 N2 NAG A 401 -14.212 -2.083 -53.683 1.00 30.00 N HETATM 5699 O3 NAG A 401 -17.051 -1.419 -52.746 1.00 30.00 O HETATM 5700 O4 NAG A 401 -17.147 -1.263 -49.954 1.00 30.00 O HETATM 5701 O5 NAG A 401 -13.911 -2.732 -50.562 1.00 30.00 O HETATM 5702 O6 NAG A 401 -16.532 -3.645 -48.302 1.00 30.00 O HETATM 5703 O7 NAG A 401 -12.056 -2.654 -53.900 1.00 30.00 O CONECT 1026 3208 CONECT 1094 1123 CONECT 1123 1094 CONECT 1507 2064 CONECT 2064 1507 CONECT 2392 2972 CONECT 2972 2392 CONECT 3208 1026 CONECT 5324 5504 CONECT 5504 5324 CONECT 5662 5663 5673 CONECT 5663 5662 5664 5670 CONECT 5664 5663 5665 5671 CONECT 5665 5664 5666 5672 CONECT 5666 5665 5667 5673 CONECT 5667 5666 5674 CONECT 5668 5669 5670 5675 CONECT 5669 5668 CONECT 5670 5663 5668 CONECT 5671 5664 CONECT 5672 5665 5676 CONECT 5673 5662 5666 CONECT 5674 5667 CONECT 5675 5668 CONECT 5676 5672 5677 5687 CONECT 5677 5676 5678 5684 CONECT 5678 5677 5679 5685 CONECT 5679 5678 5680 5686 CONECT 5680 5679 5681 5687 CONECT 5681 5680 5688 CONECT 5682 5683 5684 5689 CONECT 5683 5682 CONECT 5684 5677 5682 CONECT 5685 5678 CONECT 5686 5679 CONECT 5687 5676 5680 CONECT 5688 5681 CONECT 5689 5682 CONECT 5690 5691 5701 CONECT 5691 5690 5692 5698 CONECT 5692 5691 5693 5699 CONECT 5693 5692 5694 5700 CONECT 5694 5693 5695 5701 CONECT 5695 5694 5702 CONECT 5696 5697 5698 5703 CONECT 5697 5696 CONECT 5698 5691 5696 CONECT 5699 5692 CONECT 5700 5693 CONECT 5701 5690 5694 CONECT 5702 5695 CONECT 5703 5696 MASTER 368 0 3 8 51 0 0 6 5699 4 52 57 END