HEADER HYDROLASE 28-MAY-24 9C11 TITLE CRYSTAL STRUCTURE OF STAPHYLOCOCCAL NUCLEASE VARIANT DELTA+PHS L36R AT TITLE 2 CRYOGENIC TEMPERATURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEASE A; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: NUC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET24A+ KEYWDS ARGININE, DOMAIN-SWAPPING, STAPHYLOCOCCAL NUCLEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.ZHANG,J.L.SCHLESSMAN,M.A.SIEGLER,B.GARCIA-MORENO E. REVDAT 1 19-JUN-24 9C11 0 JRNL AUTH Y.ZHANG,J.L.SCHLESSMAN,A.C.ROBINSON,B.GARCIA-MORENO E., JRNL AUTH 2 V.S.KHANGULOV JRNL TITL DOMAIN-SWAPPING PROMOTED BY THE INTRODUCTION OF A CHARGE IN JRNL TITL 2 THE HYDROPHOBIC INTERIOR OF A PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 21748 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1137 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1565 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE SET COUNT : 87 REMARK 3 BIN FREE R VALUE : 0.2750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2174 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 51 REMARK 3 SOLVENT ATOMS : 163 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.76 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.19000 REMARK 3 B22 (A**2) : 0.31000 REMARK 3 B33 (A**2) : 0.88000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.187 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.172 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.146 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.143 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2292 ; 0.010 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2246 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3085 ; 1.764 ; 1.879 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5197 ; 0.586 ; 1.814 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 279 ; 6.097 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 12 ;15.514 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 454 ;13.610 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 329 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2612 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 496 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1092 ; 2.296 ; 1.869 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1093 ; 2.295 ; 1.870 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1364 ; 3.456 ; 3.349 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1365 ; 3.455 ; 3.350 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1200 ; 3.334 ; 2.289 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1201 ; 3.333 ; 2.289 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1717 ; 5.345 ; 4.001 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 9242 ; 7.752 ;23.930 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 9148 ; 7.712 ;23.550 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 201 REMARK 3 ORIGIN FOR THE GROUP (A): 0.7920 -11.7530 -9.9650 REMARK 3 T TENSOR REMARK 3 T11: 0.2855 T22: 0.1117 REMARK 3 T33: 0.1089 T12: 0.1501 REMARK 3 T13: -0.1450 T23: -0.0761 REMARK 3 L TENSOR REMARK 3 L11: 2.3093 L22: 2.3186 REMARK 3 L33: 5.1054 L12: 1.2762 REMARK 3 L13: 1.3637 L23: 1.5901 REMARK 3 S TENSOR REMARK 3 S11: 0.3040 S12: 0.1477 S13: -0.2149 REMARK 3 S21: 0.3551 S22: 0.3152 S23: -0.1180 REMARK 3 S31: 1.1412 S32: 0.5296 S33: -0.6192 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 201 REMARK 3 ORIGIN FOR THE GROUP (A): 21.4090 8.1460 -16.2390 REMARK 3 T TENSOR REMARK 3 T11: 0.1413 T22: 0.0516 REMARK 3 T33: 0.0834 T12: 0.0766 REMARK 3 T13: -0.0744 T23: -0.0586 REMARK 3 L TENSOR REMARK 3 L11: 2.3744 L22: 1.7258 REMARK 3 L33: 1.0771 L12: -0.5165 REMARK 3 L13: 0.4470 L23: -0.5511 REMARK 3 S TENSOR REMARK 3 S11: -0.2141 S12: -0.2577 S13: 0.3827 REMARK 3 S21: 0.2248 S22: 0.1439 S23: -0.2113 REMARK 3 S31: -0.1891 S32: -0.1262 S33: 0.0702 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 9C11 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-MAY-24. REMARK 100 THE DEPOSITION ID IS D_1000283997. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-23 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU PHOTONJET-R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54184 REMARK 200 MONOCHROMATOR : M REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : RIGAKU HYPIX-6000HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO 1.171.42.95A REMARK 200 DATA SCALING SOFTWARE : CRYSALISPRO 1.171.42.95A REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22934 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 23.210 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 9.600 REMARK 200 R MERGE (I) : 0.01500 REMARK 200 R SYM (I) : 0.04300 REMARK 200 FOR THE DATA SET : 104.3900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.19300 REMARK 200 R SYM FOR SHELL (I) : 0.24200 REMARK 200 FOR SHELL : 5.880 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28% MPD 25MM K PHOSPHATE, PH 6, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.59150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.71100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.60050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.71100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.59150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.60050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 THR A 2 REMARK 465 SER A 3 REMARK 465 THR A 4 REMARK 465 LYS A 5 REMARK 465 ASN A 144 REMARK 465 ALA A 145 REMARK 465 ASP A 146 REMARK 465 SER A 147 REMARK 465 GLY A 148 REMARK 465 GLN A 149 REMARK 465 ALA B 1 REMARK 465 THR B 2 REMARK 465 SER B 3 REMARK 465 THR B 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 54 -3.90 78.64 REMARK 500 ASN A 119 29.05 -147.88 REMARK 500 ASN A 138 -112.24 61.99 REMARK 500 TYR B 54 -5.70 74.17 REMARK 500 ASN B 118 51.75 -118.69 REMARK 500 ASN B 119 26.63 -142.41 REMARK 500 ASN B 138 -110.78 42.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 105 0.20 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 21 OD2 REMARK 620 2 ASP B 40 OD1 82.9 REMARK 620 3 THR B 41 O 85.1 78.7 REMARK 620 4 GLU B 43 OE2 119.9 156.2 95.3 REMARK 620 5 THP B 201 O5P 94.4 79.4 157.9 103.9 REMARK 620 6 HOH B 322 O 138.8 65.4 64.1 91.1 104.3 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HEJ RELATED DB: PDB REMARK 900 RELATED ID: 3OWF RELATED DB: PDB DBREF 9C11 A 1 149 UNP P00644 NUC_STAAU 83 231 DBREF 9C11 B 1 149 UNP P00644 NUC_STAAU 83 231 SEQADV 9C11 ARG A 36 UNP P00644 LEU 118 ENGINEERED MUTATION SEQADV 9C11 PHE A 50 UNP P00644 THR 126 CONFLICT SEQADV 9C11 ASN A 51 UNP P00644 LYS 127 CONFLICT SEQADV 9C11 A UNP P00644 HIS 128 DELETION SEQADV 9C11 A UNP P00644 PRO 129 DELETION SEQADV 9C11 A UNP P00644 LYS 130 DELETION SEQADV 9C11 A UNP P00644 LYS 131 DELETION SEQADV 9C11 A UNP P00644 GLY 132 DELETION SEQADV 9C11 A UNP P00644 VAL 133 DELETION SEQADV 9C11 GLY A 117 UNP P00644 PRO 199 ENGINEERED MUTATION SEQADV 9C11 LEU A 124 UNP P00644 HIS 206 ENGINEERED MUTATION SEQADV 9C11 ALA A 128 UNP P00644 SER 210 ENGINEERED MUTATION SEQADV 9C11 ARG B 36 UNP P00644 LEU 118 ENGINEERED MUTATION SEQADV 9C11 PHE B 50 UNP P00644 THR 126 CONFLICT SEQADV 9C11 ASN B 51 UNP P00644 LYS 127 CONFLICT SEQADV 9C11 B UNP P00644 HIS 128 DELETION SEQADV 9C11 B UNP P00644 PRO 129 DELETION SEQADV 9C11 B UNP P00644 LYS 130 DELETION SEQADV 9C11 B UNP P00644 LYS 131 DELETION SEQADV 9C11 B UNP P00644 GLY 132 DELETION SEQADV 9C11 B UNP P00644 VAL 133 DELETION SEQADV 9C11 GLY B 117 UNP P00644 PRO 199 ENGINEERED MUTATION SEQADV 9C11 LEU B 124 UNP P00644 HIS 206 ENGINEERED MUTATION SEQADV 9C11 ALA B 128 UNP P00644 SER 210 ENGINEERED MUTATION SEQRES 1 A 143 ALA THR SER THR LYS LYS LEU HIS LYS GLU PRO ALA THR SEQRES 2 A 143 LEU ILE LYS ALA ILE ASP GLY ASP THR VAL LYS LEU MET SEQRES 3 A 143 TYR LYS GLY GLN PRO MET THR PHE ARG ARG LEU LEU VAL SEQRES 4 A 143 ASP THR PRO GLU PHE ASN GLU LYS TYR GLY PRO GLU ALA SEQRES 5 A 143 SER ALA PHE THR LYS LYS MET VAL GLU ASN ALA LYS LYS SEQRES 6 A 143 ILE GLU VAL GLU PHE ASP LYS GLY GLN ARG THR ASP LYS SEQRES 7 A 143 TYR GLY ARG GLY LEU ALA TYR ILE TYR ALA ASP GLY LYS SEQRES 8 A 143 MET VAL ASN GLU ALA LEU VAL ARG GLN GLY LEU ALA LYS SEQRES 9 A 143 VAL ALA TYR VAL TYR LYS GLY ASN ASN THR HIS GLU GLN SEQRES 10 A 143 LEU LEU ARG LYS ALA GLU ALA GLN ALA LYS LYS GLU LYS SEQRES 11 A 143 LEU ASN ILE TRP SER GLU ASP ASN ALA ASP SER GLY GLN SEQRES 1 B 143 ALA THR SER THR LYS LYS LEU HIS LYS GLU PRO ALA THR SEQRES 2 B 143 LEU ILE LYS ALA ILE ASP GLY ASP THR VAL LYS LEU MET SEQRES 3 B 143 TYR LYS GLY GLN PRO MET THR PHE ARG ARG LEU LEU VAL SEQRES 4 B 143 ASP THR PRO GLU PHE ASN GLU LYS TYR GLY PRO GLU ALA SEQRES 5 B 143 SER ALA PHE THR LYS LYS MET VAL GLU ASN ALA LYS LYS SEQRES 6 B 143 ILE GLU VAL GLU PHE ASP LYS GLY GLN ARG THR ASP LYS SEQRES 7 B 143 TYR GLY ARG GLY LEU ALA TYR ILE TYR ALA ASP GLY LYS SEQRES 8 B 143 MET VAL ASN GLU ALA LEU VAL ARG GLN GLY LEU ALA LYS SEQRES 9 B 143 VAL ALA TYR VAL TYR LYS GLY ASN ASN THR HIS GLU GLN SEQRES 10 B 143 LEU LEU ARG LYS ALA GLU ALA GLN ALA LYS LYS GLU LYS SEQRES 11 B 143 LEU ASN ILE TRP SER GLU ASP ASN ALA ASP SER GLY GLN HET THP A 201 25 HET THP B 201 25 HET CA B 202 1 HETNAM THP THYMIDINE-3',5'-DIPHOSPHATE HETNAM CA CALCIUM ION FORMUL 3 THP 2(C10 H16 N2 O11 P2) FORMUL 5 CA CA 2+ FORMUL 6 HOH *163(H2 O) HELIX 1 AA1 TYR A 54 ASN A 68 1 15 HELIX 2 AA2 VAL A 99 GLN A 106 1 8 HELIX 3 AA3 HIS A 121 GLU A 135 1 15 HELIX 4 AA4 LEU A 137 GLU A 142 5 6 HELIX 5 AA5 TYR B 54 ASN B 68 1 15 HELIX 6 AA6 VAL B 99 GLN B 106 1 8 HELIX 7 AA7 HIS B 121 LYS B 136 1 16 HELIX 8 AA8 LEU B 137 GLU B 142 5 6 SHEET 1 AA1 6 ILE B 18 ASP B 19 0 SHEET 2 AA1 6 THR B 22 TYR B 27 -1 O THR B 22 N ASP B 19 SHEET 3 AA1 6 LYS A 9 LEU A 14 -1 N THR A 13 O MET B 26 SHEET 4 AA1 6 ILE B 72 PHE B 76 -1 O VAL B 74 N GLU A 10 SHEET 5 AA1 6 GLY B 88 ALA B 94 -1 O TYR B 93 N GLU B 73 SHEET 6 AA1 6 LYS B 97 MET B 98 -1 O LYS B 97 N ALA B 94 SHEET 1 AA2 5 ILE B 18 ASP B 19 0 SHEET 2 AA2 5 THR B 22 TYR B 27 -1 O THR B 22 N ASP B 19 SHEET 3 AA2 5 GLN B 30 ARG B 36 -1 O GLN B 30 N TYR B 27 SHEET 4 AA2 5 GLY B 88 ALA B 94 1 O GLY B 88 N ARG B 35 SHEET 5 AA2 5 LYS B 97 MET B 98 -1 O LYS B 97 N ALA B 94 SHEET 1 AA3 5 ILE A 18 ASP A 19 0 SHEET 2 AA3 5 THR A 22 TYR A 27 -1 O THR A 22 N ASP A 19 SHEET 3 AA3 5 GLN A 30 ARG A 36 -1 O GLN A 30 N TYR A 27 SHEET 4 AA3 5 GLY A 88 ALA A 94 1 O GLY A 88 N THR A 33 SHEET 5 AA3 5 LYS A 97 MET A 98 -1 O LYS A 97 N ALA A 94 SHEET 1 AA4 6 ILE A 18 ASP A 19 0 SHEET 2 AA4 6 THR A 22 TYR A 27 -1 O THR A 22 N ASP A 19 SHEET 3 AA4 6 GLU B 10 LEU B 14 -1 O THR B 13 N MET A 26 SHEET 4 AA4 6 ILE A 72 PHE A 76 -1 N VAL A 74 O GLU B 10 SHEET 5 AA4 6 GLY A 88 ALA A 94 -1 O TYR A 93 N GLU A 73 SHEET 6 AA4 6 LYS A 97 MET A 98 -1 O LYS A 97 N ALA A 94 SHEET 1 AA5 2 VAL A 39 ASP A 40 0 SHEET 2 AA5 2 LYS A 110 VAL A 111 -1 O LYS A 110 N ASP A 40 SHEET 1 AA6 2 VAL B 39 ASP B 40 0 SHEET 2 AA6 2 LYS B 110 VAL B 111 -1 O LYS B 110 N ASP B 40 LINK OD2 ASP B 21 CA CA B 202 1555 1555 2.71 LINK OD1 ASP B 40 CA CA B 202 1555 1555 2.84 LINK O THR B 41 CA CA B 202 1555 1555 2.81 LINK OE2 GLU B 43 CA CA B 202 1555 1555 2.71 LINK O5P THP B 201 CA CA B 202 1555 1555 3.20 LINK CA CA B 202 O HOH B 322 1555 1555 2.23 CRYST1 53.183 53.201 107.422 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018803 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018797 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009309 0.00000