HEADER VIRUS LIKE PARTICLE 01-JUN-24 9C3J TITLE CRYO-EM STRUCTURE OF EV-D68 B3 VIRUS-LIKE PARTICLE COMPND MOL_ID: 1; COMPND 2 MOLECULE: VP1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: VP0; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: VP3; COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN ENTEROVIRUS D68; SOURCE 3 ORGANISM_COMMON: EV68, EV-68; SOURCE 4 ORGANISM_TAXID: 42789; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HUMAN ENTEROVIRUS D68; SOURCE 10 ORGANISM_COMMON: EV68, EV-68; SOURCE 11 ORGANISM_TAXID: 42789; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HUMAN ENTEROVIRUS D68; SOURCE 17 ORGANISM_COMMON: EV68, EV-68; SOURCE 18 ORGANISM_TAXID: 42789; SOURCE 19 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 20 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS EV-D68, B3 SUBCLADE, VLP, VIRUS-LIKE PARTICLE, VIRUS LIKE PARTICLE EXPDTA ELECTRON MICROSCOPY AUTHOR J.CHENG,P.W.KRUG,H.LEI,D.L.MOSS,R.HUANG,Z.C.LANG,A.J.MORTON,C.SHEN, AUTHOR 2 T.C.PIERSON,T.ZHOU,T.J.RUCKWARDT,P.D.KWONG REVDAT 2 03-DEC-25 9C3J 1 JRNL REVDAT 1 21-MAY-25 9C3J 0 JRNL AUTH J.CHENG,P.W.KRUG,H.LEI,D.L.MOSS,Z.C.LANG,A.J.MORTON, JRNL AUTH 2 C.H.SHEN,S.PLETNEV,R.K.HUANG,T.C.PIERSON,T.ZHOU, JRNL AUTH 3 T.J.RUCKWARDT,P.D.KWONG JRNL TITL STRUCTURAL INSIGHTS FROM VACCINE CANDIDATES FOR EV-D68. JRNL REF COMMUN BIOL V. 8 860 2025 JRNL REFN ESSN 2399-3642 JRNL PMID 40467847 JRNL DOI 10.1038/S42003-025-08253-Y REMARK 2 REMARK 2 RESOLUTION. 2.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.420 REMARK 3 NUMBER OF PARTICLES : 72000 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9C3J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUN-24. REMARK 100 THE DEPOSITION ID IS D_1000284491. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : ENTEROVIRUS REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 BIOCONTINUUM (6K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5450.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.809017 -0.500000 0.309017 101.70675 REMARK 350 BIOMT2 2 0.500000 0.309017 -0.809017 264.91828 REMARK 350 BIOMT3 2 0.309017 0.809017 0.500000 -164.56498 REMARK 350 BIOMT1 3 0.500000 -0.309017 0.809017 0.67672 REMARK 350 BIOMT2 3 0.309017 -0.809017 -0.500000 530.77176 REMARK 350 BIOMT3 3 0.809017 0.500000 -0.309017 -1.09496 REMARK 350 BIOMT1 4 0.500000 0.309017 0.809017 -163.47001 REMARK 350 BIOMT2 4 -0.309017 -0.809017 0.500000 430.15998 REMARK 350 BIOMT3 4 0.809017 -0.500000 -0.309017 264.50004 REMARK 350 BIOMT1 5 0.809017 0.500000 0.309017 -163.88825 REMARK 350 BIOMT2 5 -0.500000 0.309017 0.809017 102.12499 REMARK 350 BIOMT3 5 0.309017 -0.809017 0.500000 265.17676 REMARK 350 BIOMT1 6 -0.500000 -0.309017 0.809017 266.27573 REMARK 350 BIOMT2 6 -0.309017 -0.809017 -0.500000 694.92097 REMARK 350 BIOMT3 6 0.809017 -0.500000 0.309017 100.86874 REMARK 350 BIOMT1 7 -0.309017 0.809017 0.500000 0.42224 REMARK 350 BIOMT2 7 -0.809017 -0.500000 0.309017 531.45096 REMARK 350 BIOMT3 7 0.500000 -0.309017 0.809017 -0.16128 REMARK 350 BIOMT1 8 0.309017 0.809017 -0.500000 101.03403 REMARK 350 BIOMT2 8 -0.809017 0.500000 0.309017 265.85596 REMARK 350 BIOMT3 8 0.500000 0.309017 0.809017 -164.30802 REMARK 350 BIOMT1 9 0.500000 -0.309017 -0.809017 429.06902 REMARK 350 BIOMT2 9 -0.309017 0.809017 -0.500000 265.17924 REMARK 350 BIOMT3 9 0.809017 0.500000 0.309017 -164.72626 REMARK 350 BIOMT1 10 0.000000 -1.000000 0.000000 531.19400 REMARK 350 BIOMT2 10 0.000000 0.000000 -1.000000 530.35600 REMARK 350 BIOMT3 10 1.000000 0.000000 0.000000 -0.83801 REMARK 350 BIOMT1 11 0.309017 0.809017 -0.500000 101.03403 REMARK 350 BIOMT2 11 0.809017 -0.500000 -0.309017 265.33404 REMARK 350 BIOMT3 11 -0.500000 -0.309017 -0.809017 693.83002 REMARK 350 BIOMT1 12 0.500000 -0.309017 -0.809017 429.06902 REMARK 350 BIOMT2 12 0.309017 -0.809017 0.500000 266.01076 REMARK 350 BIOMT3 12 -0.809017 -0.500000 -0.309017 694.24825 REMARK 350 BIOMT1 13 0.000000 -1.000000 0.000000 531.19400 REMARK 350 BIOMT2 13 0.000000 0.000000 1.000000 0.83400 REMARK 350 BIOMT3 13 -1.000000 0.000000 0.000000 530.36000 REMARK 350 BIOMT1 14 -0.500000 -0.309017 0.809017 266.27573 REMARK 350 BIOMT2 14 0.309017 0.809017 0.500000 -163.73098 REMARK 350 BIOMT3 14 -0.809017 0.500000 -0.309017 428.65325 REMARK 350 BIOMT1 15 -0.309017 0.809017 0.500000 0.42224 REMARK 350 BIOMT2 15 0.809017 0.500000 -0.309017 -0.26096 REMARK 350 BIOMT3 15 -0.500000 0.309017 -0.809017 529.68328 REMARK 350 BIOMT1 16 -0.809017 -0.500000 -0.309017 695.08626 REMARK 350 BIOMT2 16 -0.500000 0.309017 0.809017 102.12499 REMARK 350 BIOMT3 16 -0.309017 0.809017 -0.500000 264.34523 REMARK 350 BIOMT1 17 -1.000000 0.000000 0.000000 531.19801 REMARK 350 BIOMT2 17 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 17 0.000000 0.000000 -1.000000 529.52199 REMARK 350 BIOMT1 18 -0.809017 0.500000 -0.309017 429.49126 REMARK 350 BIOMT2 18 0.500000 0.309017 -0.809017 264.91827 REMARK 350 BIOMT3 18 -0.309017 -0.809017 -0.500000 694.08697 REMARK 350 BIOMT1 19 -0.500000 0.309017 -0.809017 530.52128 REMARK 350 BIOMT2 19 0.309017 -0.809017 -0.500000 530.77176 REMARK 350 BIOMT3 19 -0.809017 -0.500000 0.309017 530.61696 REMARK 350 BIOMT1 20 -0.500000 -0.309017 -0.809017 694.66802 REMARK 350 BIOMT2 20 -0.309017 -0.809017 0.500000 430.15997 REMARK 350 BIOMT3 20 -0.809017 0.500000 0.309017 265.02196 REMARK 350 BIOMT1 21 0.809017 -0.500000 -0.309017 265.33804 REMARK 350 BIOMT2 21 -0.500000 -0.309017 -0.809017 694.66402 REMARK 350 BIOMT3 21 0.309017 0.809017 -0.500000 100.19602 REMARK 350 BIOMT1 22 0.309017 -0.809017 0.500000 266.01477 REMARK 350 BIOMT2 22 -0.809017 -0.500000 -0.309017 695.08226 REMARK 350 BIOMT3 22 0.500000 -0.309017 -0.809017 428.23101 REMARK 350 BIOMT1 23 0.000000 0.000000 1.000000 0.83800 REMARK 350 BIOMT2 23 -1.000000 0.000000 0.000000 531.19400 REMARK 350 BIOMT3 23 0.000000 -1.000000 0.000000 530.35600 REMARK 350 BIOMT1 24 0.309017 0.809017 0.500000 -163.72697 REMARK 350 BIOMT2 24 -0.809017 0.500000 -0.309017 429.48726 REMARK 350 BIOMT3 24 -0.500000 -0.309017 0.809017 265.43772 REMARK 350 BIOMT1 25 0.809017 0.500000 -0.309017 -0.25696 REMARK 350 BIOMT2 25 -0.500000 0.309017 -0.809017 530.51728 REMARK 350 BIOMT3 25 -0.309017 0.809017 0.500000 -0.41576 REMARK 350 BIOMT1 26 -0.500000 0.309017 0.809017 102.12899 REMARK 350 BIOMT2 26 -0.309017 0.809017 -0.500000 265.17923 REMARK 350 BIOMT3 26 -0.809017 -0.500000 -0.309017 694.24825 REMARK 350 BIOMT1 27 0.000000 1.000000 0.000000 0.00400 REMARK 350 BIOMT2 27 0.000000 0.000000 -1.000000 530.35600 REMARK 350 BIOMT3 27 -1.000000 0.000000 0.000000 530.36000 REMARK 350 BIOMT1 28 0.500000 0.309017 -0.809017 264.92228 REMARK 350 BIOMT2 28 -0.309017 -0.809017 -0.500000 694.92097 REMARK 350 BIOMT3 28 -0.809017 0.500000 -0.309017 428.65325 REMARK 350 BIOMT1 29 0.309017 -0.809017 -0.500000 530.77576 REMARK 350 BIOMT2 29 -0.809017 -0.500000 0.309017 531.45096 REMARK 350 BIOMT3 29 -0.500000 0.309017 -0.809017 529.68328 REMARK 350 BIOMT1 30 -0.309017 -0.809017 0.500000 430.16398 REMARK 350 BIOMT2 30 -0.809017 0.500000 0.309017 265.85596 REMARK 350 BIOMT3 30 -0.500000 -0.309017 -0.809017 693.83001 REMARK 350 BIOMT1 31 0.000000 1.000000 0.000000 0.00401 REMARK 350 BIOMT2 31 0.000000 0.000000 1.000000 0.83400 REMARK 350 BIOMT3 31 1.000000 0.000000 0.000000 -0.83801 REMARK 350 BIOMT1 32 0.500000 0.309017 -0.809017 264.92228 REMARK 350 BIOMT2 32 0.309017 0.809017 0.500000 -163.73097 REMARK 350 BIOMT3 32 0.809017 -0.500000 0.309017 100.86874 REMARK 350 BIOMT1 33 0.309017 -0.809017 -0.500000 530.77577 REMARK 350 BIOMT2 33 0.809017 0.500000 -0.309017 -0.26096 REMARK 350 BIOMT3 33 0.500000 -0.309017 0.809017 -0.16128 REMARK 350 BIOMT1 34 -0.309017 -0.809017 0.500000 430.16398 REMARK 350 BIOMT2 34 0.809017 -0.500000 -0.309017 265.33404 REMARK 350 BIOMT3 34 0.500000 0.309017 0.809017 -164.30802 REMARK 350 BIOMT1 35 -0.500000 0.309017 0.809017 102.12899 REMARK 350 BIOMT2 35 0.309017 -0.809017 0.500000 266.01076 REMARK 350 BIOMT3 35 0.809017 0.500000 0.309017 -164.72626 REMARK 350 BIOMT1 36 -0.309017 -0.809017 -0.500000 694.92498 REMARK 350 BIOMT2 36 0.809017 -0.500000 0.309017 101.70274 REMARK 350 BIOMT3 36 -0.500000 -0.309017 0.809017 265.43772 REMARK 350 BIOMT1 37 -0.809017 -0.500000 0.309017 531.45497 REMARK 350 BIOMT2 37 0.500000 -0.309017 0.809017 0.67272 REMARK 350 BIOMT3 37 -0.309017 0.809017 0.500000 -0.41576 REMARK 350 BIOMT1 38 -0.809017 0.500000 0.309017 265.85997 REMARK 350 BIOMT2 38 0.500000 0.309017 0.809017 -163.47402 REMARK 350 BIOMT3 38 0.309017 0.809017 -0.500000 100.19602 REMARK 350 BIOMT1 39 -0.309017 0.809017 -0.500000 265.18324 REMARK 350 BIOMT2 39 0.809017 0.500000 0.309017 -163.89226 REMARK 350 BIOMT3 39 0.500000 -0.309017 -0.809017 428.23101 REMARK 350 BIOMT1 40 0.000000 0.000000 -1.000000 530.36000 REMARK 350 BIOMT2 40 1.000000 0.000000 0.000000 -0.00401 REMARK 350 BIOMT3 40 0.000000 -1.000000 0.000000 530.35600 REMARK 350 BIOMT1 41 0.809017 -0.500000 0.309017 101.70675 REMARK 350 BIOMT2 41 -0.500000 -0.309017 0.809017 266.27172 REMARK 350 BIOMT3 41 -0.309017 -0.809017 -0.500000 694.08697 REMARK 350 BIOMT1 42 0.500000 -0.309017 0.809017 0.67672 REMARK 350 BIOMT2 42 -0.309017 0.809017 0.500000 0.41824 REMARK 350 BIOMT3 42 -0.809017 -0.500000 0.309017 530.61696 REMARK 350 BIOMT1 43 0.500000 0.309017 0.809017 -163.47001 REMARK 350 BIOMT2 43 0.309017 0.809017 -0.500000 101.03002 REMARK 350 BIOMT3 43 -0.809017 0.500000 0.309017 265.02196 REMARK 350 BIOMT1 44 0.809017 0.500000 0.309017 -163.88825 REMARK 350 BIOMT2 44 0.500000 -0.309017 -0.809017 429.06501 REMARK 350 BIOMT3 44 -0.309017 0.809017 -0.500000 264.34524 REMARK 350 BIOMT1 45 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 45 0.000000 -1.000000 0.000000 531.19000 REMARK 350 BIOMT3 45 0.000000 0.000000 -1.000000 529.52200 REMARK 350 BIOMT1 46 0.000000 0.000000 1.000000 0.83801 REMARK 350 BIOMT2 46 1.000000 0.000000 0.000000 -0.00401 REMARK 350 BIOMT3 46 0.000000 1.000000 0.000000 -0.83400 REMARK 350 BIOMT1 47 0.309017 0.809017 0.500000 -163.72697 REMARK 350 BIOMT2 47 0.809017 -0.500000 0.309017 101.70274 REMARK 350 BIOMT3 47 0.500000 0.309017 -0.809017 264.08427 REMARK 350 BIOMT1 48 0.809017 0.500000 -0.309017 -0.25696 REMARK 350 BIOMT2 48 0.500000 -0.309017 0.809017 0.67272 REMARK 350 BIOMT3 48 0.309017 -0.809017 -0.500000 529.93776 REMARK 350 BIOMT1 49 0.809017 -0.500000 -0.309017 265.33804 REMARK 350 BIOMT2 49 0.500000 0.309017 0.809017 -163.47402 REMARK 350 BIOMT3 49 -0.309017 -0.809017 0.500000 429.32597 REMARK 350 BIOMT1 50 0.309017 -0.809017 0.500000 266.01477 REMARK 350 BIOMT2 50 0.809017 0.500000 0.309017 -163.89226 REMARK 350 BIOMT3 50 -0.500000 0.309017 0.809017 101.29098 REMARK 350 BIOMT1 51 -0.309017 0.809017 -0.500000 265.18324 REMARK 350 BIOMT2 51 -0.809017 -0.500000 -0.309017 695.08226 REMARK 350 BIOMT3 51 -0.500000 0.309017 0.809017 101.29098 REMARK 350 BIOMT1 52 0.000000 0.000000 -1.000000 530.36000 REMARK 350 BIOMT2 52 -1.000000 0.000000 0.000000 531.19400 REMARK 350 BIOMT3 52 0.000000 1.000000 0.000000 -0.83400 REMARK 350 BIOMT1 53 -0.309017 -0.809017 -0.500000 694.92498 REMARK 350 BIOMT2 53 -0.809017 0.500000 -0.309017 429.48726 REMARK 350 BIOMT3 53 0.500000 0.309017 -0.809017 264.08427 REMARK 350 BIOMT1 54 -0.809017 -0.500000 0.309017 531.45496 REMARK 350 BIOMT2 54 -0.500000 0.309017 -0.809017 530.51728 REMARK 350 BIOMT3 54 0.309017 -0.809017 -0.500000 529.93776 REMARK 350 BIOMT1 55 -0.809017 0.500000 0.309017 265.85996 REMARK 350 BIOMT2 55 -0.500000 -0.309017 -0.809017 694.66402 REMARK 350 BIOMT3 55 -0.309017 -0.809017 0.500000 429.32597 REMARK 350 BIOMT1 56 -0.500000 -0.309017 -0.809017 694.66802 REMARK 350 BIOMT2 56 0.309017 0.809017 -0.500000 101.03002 REMARK 350 BIOMT3 56 0.809017 -0.500000 -0.309017 264.50003 REMARK 350 BIOMT1 57 -0.809017 -0.500000 -0.309017 695.08626 REMARK 350 BIOMT2 57 0.500000 -0.309017 -0.809017 429.06501 REMARK 350 BIOMT3 57 0.309017 -0.809017 0.500000 265.17676 REMARK 350 BIOMT1 58 -1.000000 0.000000 0.000000 531.19801 REMARK 350 BIOMT2 58 0.000000 -1.000000 0.000000 531.19000 REMARK 350 BIOMT3 58 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 59 -0.809017 0.500000 -0.309017 429.49126 REMARK 350 BIOMT2 59 -0.500000 -0.309017 0.809017 266.27172 REMARK 350 BIOMT3 59 0.309017 0.809017 0.500000 -164.56498 REMARK 350 BIOMT1 60 -0.500000 0.309017 -0.809017 530.52129 REMARK 350 BIOMT2 60 -0.309017 0.809017 0.500000 0.41824 REMARK 350 BIOMT3 60 0.809017 0.500000 -0.309017 -1.09496 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN B 40 REMARK 465 TYR B 41 REMARK 465 LEU B 42 REMARK 465 PRO B 43 REMARK 465 ASP B 44 REMARK 465 HIS B 45 REMARK 465 GLU B 46 REMARK 465 ALA B 47 REMARK 465 VAL B 48 REMARK 465 ALA B 49 REMARK 465 ILE B 50 REMARK 465 ASP B 51 REMARK 465 LYS B 52 REMARK 465 PRO B 53 REMARK 465 THR B 54 REMARK 465 GLN B 55 REMARK 465 PRO B 56 REMARK 465 GLU B 57 REMARK 465 THR B 58 REMARK 465 ALA B 59 REMARK 465 ASP C 181 REMARK 465 ALA C 182 REMARK 465 LYS C 183 REMARK 465 SER C 184 REMARK 465 THR C 185 REMARK 465 ASN C 186 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 86 -3.56 67.79 REMARK 500 ASP A 87 31.01 -142.05 REMARK 500 ASN A 89 10.84 -141.67 REMARK 500 GLU A 108 49.73 -82.36 REMARK 500 ASN A 131 -151.95 51.47 REMARK 500 ALA A 214 -166.00 -77.76 REMARK 500 ASP A 215 -128.64 58.98 REMARK 500 ALA A 250 75.14 53.18 REMARK 500 LEU A 257 79.52 55.41 REMARK 500 ALA B 34 -140.26 52.05 REMARK 500 LEU B 86 -5.20 68.22 REMARK 500 ASN B 88 11.02 58.18 REMARK 500 SER B 104 -158.09 -149.72 REMARK 500 PHE B 106 171.68 59.25 REMARK 500 ASP B 163 -31.63 -130.11 REMARK 500 LEU B 180 48.12 -80.69 REMARK 500 ARG B 181 -13.96 -140.70 REMARK 500 CYS B 236 -14.10 72.53 REMARK 500 CYS B 237 52.77 39.52 REMARK 500 CYS C 27 15.77 56.43 REMARK 500 ASP C 76 146.58 71.95 REMARK 500 GLN C 89 49.23 -85.80 REMARK 500 ARG C 176 -97.90 91.84 REMARK 500 MET C 177 70.35 51.81 REMARK 500 ARG C 228 -167.26 -129.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-45171 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF EV-D68 B3 VIRUS-LIKE PARTICLE DBREF1 9C3J A 54 269 UNP A0A6B9L1K3_HED68 DBREF2 9C3J A A0A6B9L1K3 66 281 DBREF1 9C3J B 29 240 UNP A0A6B9W1K7_HED68 DBREF2 9C3J B A0A6B9W1K7 98 309 DBREF1 9C3J C 1 247 UNP A0A4D5YJG5_HED68 DBREF2 9C3J C A0A4D5YJG5 318 564 SEQRES 1 A 216 VAL SER GLU THR LEU VAL GLU ASN PHE LEU SER ARG ALA SEQRES 2 A 216 ALA LEU VAL SER LYS ARG SER PHE GLU TYR LYS ASP HIS SEQRES 3 A 216 THR SER SER THR ALA GLN THR ASP LYS ASN PHE PHE LYS SEQRES 4 A 216 TRP THR ILE ASN THR ARG SER PHE VAL GLN LEU ARG ARG SEQRES 5 A 216 LYS LEU GLU LEU PHE THR TYR LEU ARG PHE ASP ALA GLU SEQRES 6 A 216 ILE THR ILE LEU THR THR VAL ALA VAL ASN GLY SER ASN SEQRES 7 A 216 ASN ASN THR TYR VAL GLY LEU PRO ASP LEU THR LEU GLN SEQRES 8 A 216 ALA MET PHE VAL PRO THR GLY ALA LEU THR PRO GLU LYS SEQRES 9 A 216 GLN ASP SER PHE HIS TRP GLN SER GLY SER ASN ALA SER SEQRES 10 A 216 VAL PHE PHE LYS ILE SER ASP PRO PRO ALA ARG MET THR SEQRES 11 A 216 ILE PRO PHE MET CYS ILE ASN SER ALA TYR SER VAL PHE SEQRES 12 A 216 TYR ASP GLY PHE ALA GLY PHE GLU LYS THR GLY LEU TYR SEQRES 13 A 216 GLY ILE ASN PRO ALA ASP THR ILE GLY ASN LEU CYS VAL SEQRES 14 A 216 ARG ILE VAL ASN GLU HIS GLN PRO VAL GLY PHE THR VAL SEQRES 15 A 216 THR VAL ARG VAL TYR MET LYS PRO LYS HIS ILE LYS ALA SEQRES 16 A 216 TRP ALA PRO ARG PRO PRO ARG THR LEU PRO TYR MET SER SEQRES 17 A 216 ILE ALA ASN ALA ASN TYR LYS GLY SEQRES 1 B 212 ALA ASN TYR CYS CYS ALA TYR GLY GLU TRP PRO ASN TYR SEQRES 2 B 212 LEU PRO ASP HIS GLU ALA VAL ALA ILE ASP LYS PRO THR SEQRES 3 B 212 GLN PRO GLU THR ALA THR ASP ARG PHE TYR THR LEU ARG SEQRES 4 B 212 SER VAL LYS TRP GLU ALA THR SER THR GLY TRP TRP TRP SEQRES 5 B 212 LYS LEU PRO ASP ALA LEU ASN ASN ILE GLY MET PHE GLY SEQRES 6 B 212 GLN ASN VAL GLN HIS HIS TYR LEU TYR ARG SER GLY PHE SEQRES 7 B 212 LEU ILE HIS VAL GLN CYS ASN ALA THR LYS PHE HIS GLN SEQRES 8 B 212 GLY ALA LEU LEU VAL VAL ALA ILE PRO GLU HIS GLN ARG SEQRES 9 B 212 GLY ALA HIS ASN THR THR THR SER PRO GLY PHE ASP ASP SEQRES 10 B 212 ILE MET LYS GLY GLU ALA GLY GLY THR PHE ASN HIS PRO SEQRES 11 B 212 TYR VAL LEU ASP ASP GLY THR SER LEU ALA CYS ALA THR SEQRES 12 B 212 ILE PHE PRO HIS GLN TRP ILE ASN LEU ARG THR ASN ASN SEQRES 13 B 212 SER ALA THR ILE VAL LEU PRO TRP MET ASN ALA ALA PRO SEQRES 14 B 212 MET ASP PHE PRO LEU ARG HIS ASN GLN TRP THR LEU ALA SEQRES 15 B 212 ILE ILE PRO VAL VAL PRO LEU GLY THR ARG THR MET SER SEQRES 16 B 212 SER MET VAL PRO ILE THR VAL SER ILE ALA PRO MET CYS SEQRES 17 B 212 CYS GLU PHE ASN SEQRES 1 C 247 GLY VAL PRO THR TYR LEU LEU PRO GLY SER GLY GLN PHE SEQRES 2 C 247 LEU THR THR ASP ASP HIS SER SER ALA PRO VAL LEU PRO SEQRES 3 C 247 CYS PHE ASN PRO THR PRO GLU MET HIS ILE PRO GLY GLN SEQRES 4 C 247 VAL ARG ASN MET LEU GLU VAL VAL GLN VAL GLU SER MET SEQRES 5 C 247 MET GLU ILE ASN ASN THR GLU SER ALA VAL GLY MET GLU SEQRES 6 C 247 ARG LEU LYS VAL ASP ILE SER ALA LEU THR ASP VAL ASP SEQRES 7 C 247 GLN LEU LEU PHE ASN ILE PRO LEU ASP ILE GLN LEU ASP SEQRES 8 C 247 GLY PRO LEU ARG ASN THR LEU VAL GLY ASN ILE SER ARG SEQRES 9 C 247 TYR TYR THR HIS TRP SER GLY SER LEU GLU MET THR PHE SEQRES 10 C 247 MET PHE CYS GLY SER PHE MET ALA THR GLY LYS LEU ILE SEQRES 11 C 247 LEU CYS TYR THR PRO PRO GLY GLY SER CYS PRO THR THR SEQRES 12 C 247 ARG GLU THR ALA MET LEU GLY THR HIS ILE VAL TRP ASP SEQRES 13 C 247 PHE GLY LEU GLN SER SER ILE THR LEU ILE ILE PRO TRP SEQRES 14 C 247 ILE SER GLY SER HIS TYR ARG MET PHE ASN ASN ASP ALA SEQRES 15 C 247 LYS SER THR ASN ALA ASN VAL GLY TYR VAL THR CYS PHE SEQRES 16 C 247 MET GLN THR ASN LEU ILE VAL PRO SER GLU SER SER ASP SEQRES 17 C 247 THR CYS SER LEU ILE GLY PHE ILE ALA ALA LYS ASP ASP SEQRES 18 C 247 PHE SER LEU ARG LEU MET ARG ASP SER PRO ASP ILE GLY SEQRES 19 C 247 GLN ILE ASP HIS LEU HIS GLY ALA GLU ALA ALA TYR GLN HELIX 1 AA1 LEU A 58 SER A 64 1 7 HELIX 2 AA2 PHE A 100 GLU A 108 1 9 HELIX 3 AA3 SER A 160 SER A 165 5 6 HELIX 4 AA4 GLY B 90 HIS B 99 1 10 HELIX 5 AA5 GLY B 142 MET B 147 1 6 HELIX 6 AA6 LYS B 148 GLY B 152 5 5 HELIX 7 AA7 LEU B 167 PHE B 173 5 7 HELIX 8 AA8 MET C 43 GLN C 48 1 6 HELIX 9 AA9 VAL C 62 LEU C 67 5 6 HELIX 10 AB1 THR C 97 ARG C 104 1 8 HELIX 11 AB2 THR C 143 GLY C 150 1 8 SHEET 1 AA1 4 ALA A 67 SER A 70 0 SHEET 2 AA1 4 THR A 234 PRO A 251 -1 O MET A 241 N ALA A 67 SHEET 3 AA1 4 PHE A 110 ALA A 126 -1 N LEU A 122 O ARG A 238 SHEET 4 AA1 4 ALA A 180 ILE A 184 -1 O ILE A 184 N ALA A 117 SHEET 1 AA2 4 SER A 73 GLU A 75 0 SHEET 2 AA2 4 THR A 234 PRO A 251 -1 O VAL A 235 N PHE A 74 SHEET 3 AA2 4 PHE A 110 ALA A 126 -1 N LEU A 122 O ARG A 238 SHEET 4 AA2 4 TYR A 193 SER A 194 -1 O TYR A 193 N LEU A 113 SHEET 1 AA3 4 PHE A 90 THR A 94 0 SHEET 2 AA3 4 GLY A 218 ILE A 224 -1 O VAL A 222 N PHE A 91 SHEET 3 AA3 4 THR A 142 PRO A 149 -1 N MET A 146 O CYS A 221 SHEET 4 AA3 4 ALA A 169 LYS A 174 -1 O PHE A 173 N LEU A 143 SHEET 1 AA4 3 TYR B 64 THR B 65 0 SHEET 2 AA4 3 VAL B 226 ILE B 232 -1 O ILE B 232 N TYR B 64 SHEET 3 AA4 3 VAL B 69 TRP B 71 -1 N VAL B 69 O ILE B 228 SHEET 1 AA5 4 TYR B 64 THR B 65 0 SHEET 2 AA5 4 VAL B 226 ILE B 232 -1 O ILE B 232 N TYR B 64 SHEET 3 AA5 4 LEU B 107 CYS B 112 -1 N HIS B 109 O SER B 231 SHEET 4 AA5 4 SER B 185 VAL B 189 -1 O ILE B 188 N ILE B 108 SHEET 1 AA6 4 TRP B 78 LYS B 81 0 SHEET 2 AA6 4 TRP B 207 GLY B 218 -1 O ILE B 211 N TRP B 78 SHEET 3 AA6 4 GLN B 119 PRO B 128 -1 N VAL B 125 O ALA B 210 SHEET 4 AA6 4 HIS B 175 ASN B 179 -1 O ILE B 178 N LEU B 122 SHEET 1 AA7 2 TYR B 102 ARG B 103 0 SHEET 2 AA7 2 GLU B 238 PHE B 239 -1 O GLU B 238 N ARG B 103 SHEET 1 AA8 3 SER C 51 MET C 52 0 SHEET 2 AA8 3 THR C 209 ALA C 218 -1 O ILE C 216 N SER C 51 SHEET 3 AA8 3 VAL C 69 SER C 72 -1 N ILE C 71 O CYS C 210 SHEET 1 AA9 4 SER C 51 MET C 52 0 SHEET 2 AA9 4 THR C 209 ALA C 218 -1 O ILE C 216 N SER C 51 SHEET 3 AA9 4 LEU C 113 PHE C 119 -1 N THR C 116 O PHE C 215 SHEET 4 AA9 4 SER C 162 ILE C 166 -1 O ILE C 163 N PHE C 117 SHEET 1 AB1 4 LEU C 80 PRO C 85 0 SHEET 2 AB1 4 TYR C 191 MET C 196 -1 O CYS C 194 N LEU C 81 SHEET 3 AB1 4 LYS C 128 THR C 134 -1 N CYS C 132 O THR C 193 SHEET 4 AB1 4 HIS C 152 ASP C 156 -1 O TRP C 155 N LEU C 129 SHEET 1 AB2 3 ILE C 170 SER C 171 0 SHEET 2 AB2 3 HIS C 108 GLY C 111 -1 N GLY C 111 O ILE C 170 SHEET 3 AB2 3 SER C 223 ARG C 225 -1 O SER C 223 N SER C 110 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 TER 1721 GLY A 269 TER 3241 ASN B 240 TER 5098 GLN C 247 MASTER 351 0 0 11 39 0 0 6 5095 3 0 53 END