HEADER LIGASE 06-JUN-24 9C5E TITLE COVALENT COMPLEX BETWEEN PARKIN CATALYTIC (RCAT) DOMAIN AND UBIQUITIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE PARKIN; COMPND 3 CHAIN: A; COMPND 4 EC: 2.3.2.31; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: POLYUBIQUITIN-B; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: PARK, PARKIN, CG10523; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: UBB; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS COVALENT COMPLEX E3 LIGASE THIOETHER HADDOCK, LIGASE EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR E.M.CONNELLY,A.C.RINTALA-DEMPSEY,M.GUNDOGDU,E.A.FREEMAN,J.KOSZELA, AUTHOR 2 J.D.AGUIRRE,G.ZHU,O.KAMARAINEN,R.TADAYON,H.WALDEN,G.S.SHAW REVDAT 2 09-OCT-24 9C5E 1 COMPND SOURCE REMARK SEQADV REVDAT 2 2 1 SEQRES LINK ATOM REVDAT 1 14-AUG-24 9C5E 0 JRNL AUTH E.M.CONNELLY,A.C.RINTALA-DEMPSEY,M.GUNDOGDU,E.A.FREEMAN, JRNL AUTH 2 J.KOSZELA,J.D.AGUIRRE,G.ZHU,O.KAMARAINEN,R.TADAYON,H.WALDEN, JRNL AUTH 3 G.S.SHAW JRNL TITL CAPTURING THE CATALYTIC INTERMEDIATES OF PARKIN JRNL TITL 2 UBIQUITINATION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 121 14121 2024 JRNL REFN ESSN 1091-6490 JRNL PMID 39078678 JRNL DOI 10.1073/PNAS.2403114121 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : HADDOCK REMARK 3 AUTHORS : BONVIN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9C5E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUN-24. REMARK 100 THE DEPOSITION ID IS D_1000284098. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 300 UM [U-13C; U-15N] RCAT REMARK 210 DOMAIN FROM PARKIN, 300 UM REMARK 210 UBIQUITIN G75-C3, 90% H2O/10% REMARK 210 D2O; 800 UM [U-13C; U-15N] RCAT REMARK 210 DOMAIN FROM PARKIN, 800 UM REMARK 210 UBIQUITIN G75-C3, 90% H2O/10% REMARK 210 D2O; 300 UM [U-13C; U-15N] REMARK 210 UBIQUITIN G75-C3, 300 UM RCAT REMARK 210 DOMAIN FROM PARKIN, 90% H2O/10% REMARK 210 D2O; 300 UM [U-13C; U-15N] RCAT REMARK 210 DOMAIN FROM PARKIN, 90% H2O/10% REMARK 210 D2O; 500 UM [U-13C; U-15N] REMARK 210 UBIQUITIN G75-C3, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCACB; 3D CBCA(CO)NH; 2D 1H REMARK 210 -15N HSQC; 2D 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEWJ, CNS, NMRPIPE REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG B 54 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 1 ARG B 54 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 1 ARG B 72 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 2 ARG A 440 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 2 ARG A 445 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 2 ARG B 42 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 2 ARG B 54 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 2 ARG B 54 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 2 ARG B 72 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 3 ARG A 415 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 3 ARG A 440 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 3 ARG B 54 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 3 ARG B 54 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 3 ARG B 72 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 3 ARG B 72 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 3 ARG B 74 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 4 ARG A 445 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 4 ARG B 54 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 4 ARG B 54 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 5 ARG A 415 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 5 ARG A 445 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 5 ARG B 54 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 5 ARG B 54 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 5 ARG B 74 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 6 ARG A 420 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 6 ARG A 456 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 6 ARG B 42 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 6 ARG B 54 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 6 ARG B 54 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 6 ARG B 72 NE - CZ - NH1 ANGL. DEV. = 5.6 DEGREES REMARK 500 7 ARG A 456 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 7 ARG B 42 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 7 ARG B 54 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 7 ARG B 54 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 7 ARG B 72 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 7 ARG B 74 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 8 ARG A 445 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 8 ARG B 42 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 8 ARG B 54 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 8 ARG B 54 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 8 ARG B 72 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 9 ARG A 415 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 9 ARG A 440 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 9 ARG A 445 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 9 ARG B 42 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 9 ARG B 54 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 9 ARG B 54 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 9 ARG B 74 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 10 ARG A 445 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 10 ARG B 54 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 52 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 418 40.67 -76.07 REMARK 500 1 ARG A 420 -44.64 63.38 REMARK 500 1 ARG A 440 23.22 47.17 REMARK 500 1 CYS A 459 -58.81 -158.89 REMARK 500 1 GLN A 468 10.98 55.54 REMARK 500 1 HIS A 479 68.65 -175.95 REMARK 500 1 LEU B 8 1.63 -64.34 REMARK 500 1 GLU B 64 0.63 57.35 REMARK 500 2 ALA A 416 -110.52 -149.14 REMARK 500 2 ARG A 420 -38.95 63.23 REMARK 500 2 ARG A 440 24.79 47.07 REMARK 500 2 CYS A 459 -59.24 -158.88 REMARK 500 2 GLN A 468 10.92 56.21 REMARK 500 2 HIS A 479 69.35 -175.59 REMARK 500 2 GLU B 64 -3.72 56.93 REMARK 500 3 ARG A 415 -79.50 -104.44 REMARK 500 3 ARG A 420 -71.35 54.78 REMARK 500 3 ARG A 440 21.46 47.86 REMARK 500 3 CYS A 459 -61.06 -156.59 REMARK 500 3 GLN A 468 16.27 55.32 REMARK 500 3 HIS A 479 67.51 -175.28 REMARK 500 3 GLU B 64 -0.30 56.38 REMARK 500 4 ALA A 416 -163.94 -120.04 REMARK 500 4 ARG A 420 -35.86 64.28 REMARK 500 4 SER A 432 19.82 -143.23 REMARK 500 4 CYS A 439 11.36 -141.11 REMARK 500 4 ARG A 440 19.98 47.47 REMARK 500 4 THR A 455 -0.85 -56.07 REMARK 500 4 CYS A 459 -60.26 -158.35 REMARK 500 4 GLN A 468 19.16 54.21 REMARK 500 4 HIS A 479 68.74 -176.95 REMARK 500 4 GLU B 64 0.50 57.83 REMARK 500 5 ALA A 417 -30.58 -131.51 REMARK 500 5 ARG A 420 -41.20 63.90 REMARK 500 5 ARG A 440 19.44 49.72 REMARK 500 5 CYS A 459 -61.11 -156.97 REMARK 500 5 GLN A 468 8.77 56.30 REMARK 500 5 HIS A 479 66.13 -176.62 REMARK 500 5 GLU B 64 11.53 56.46 REMARK 500 6 ASN A 414 96.42 -68.07 REMARK 500 6 ALA A 417 -62.23 -155.98 REMARK 500 6 ARG A 420 -49.90 62.73 REMARK 500 6 CYS A 439 11.77 -142.10 REMARK 500 6 ARG A 440 25.99 46.96 REMARK 500 6 CYS A 459 -56.45 -161.07 REMARK 500 6 GLN A 468 11.49 55.97 REMARK 500 6 HIS A 479 64.78 -175.01 REMARK 500 6 GLU B 64 -0.99 56.90 REMARK 500 7 ARG A 420 -29.11 65.41 REMARK 500 7 ARG A 440 17.77 45.58 REMARK 500 REMARK 500 THIS ENTRY HAS 85 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 GLU A 418 0.08 SIDE CHAIN REMARK 500 1 GLU A 444 0.07 SIDE CHAIN REMARK 500 1 GLU A 462 0.10 SIDE CHAIN REMARK 500 1 GLU A 470 0.07 SIDE CHAIN REMARK 500 1 ASP B 21 0.09 SIDE CHAIN REMARK 500 2 GLU A 444 0.09 SIDE CHAIN REMARK 500 2 GLU A 462 0.09 SIDE CHAIN REMARK 500 2 GLU A 470 0.07 SIDE CHAIN REMARK 500 2 ASP B 21 0.08 SIDE CHAIN REMARK 500 3 GLU A 462 0.08 SIDE CHAIN REMARK 500 3 ASP B 21 0.08 SIDE CHAIN REMARK 500 3 GLU B 34 0.07 SIDE CHAIN REMARK 500 4 GLU A 418 0.08 SIDE CHAIN REMARK 500 4 GLU A 470 0.07 SIDE CHAIN REMARK 500 4 GLU B 16 0.07 SIDE CHAIN REMARK 500 4 ASP B 21 0.09 SIDE CHAIN REMARK 500 4 GLU B 34 0.07 SIDE CHAIN REMARK 500 5 GLU A 444 0.07 SIDE CHAIN REMARK 500 5 GLU A 462 0.08 SIDE CHAIN REMARK 500 5 ASP B 21 0.08 SIDE CHAIN REMARK 500 6 GLU A 418 0.08 SIDE CHAIN REMARK 500 6 GLU A 444 0.09 SIDE CHAIN REMARK 500 6 GLU A 462 0.10 SIDE CHAIN REMARK 500 6 ASP B 21 0.08 SIDE CHAIN REMARK 500 6 GLU B 34 0.08 SIDE CHAIN REMARK 500 6 ASP B 39 0.07 SIDE CHAIN REMARK 500 7 ASP A 422 0.08 SIDE CHAIN REMARK 500 7 GLU A 462 0.09 SIDE CHAIN REMARK 500 7 GLU A 470 0.07 SIDE CHAIN REMARK 500 7 GLU B 16 0.07 SIDE CHAIN REMARK 500 7 ASP B 21 0.09 SIDE CHAIN REMARK 500 7 GLU B 34 0.07 SIDE CHAIN REMARK 500 7 ASP B 39 0.08 SIDE CHAIN REMARK 500 8 ASP A 412 0.07 SIDE CHAIN REMARK 500 8 GLU A 444 0.10 SIDE CHAIN REMARK 500 8 ARG A 445 0.11 SIDE CHAIN REMARK 500 8 ASP A 446 0.10 SIDE CHAIN REMARK 500 8 GLU A 462 0.09 SIDE CHAIN REMARK 500 8 ASP B 21 0.09 SIDE CHAIN REMARK 500 8 ASP B 39 0.07 SIDE CHAIN REMARK 500 9 GLU A 418 0.10 SIDE CHAIN REMARK 500 9 ASP A 446 0.09 SIDE CHAIN REMARK 500 9 GLU A 462 0.12 SIDE CHAIN REMARK 500 9 ASP B 21 0.09 SIDE CHAIN REMARK 500 9 GLU B 34 0.07 SIDE CHAIN REMARK 500 10 ASP A 422 0.09 SIDE CHAIN REMARK 500 10 ASP A 446 0.09 SIDE CHAIN REMARK 500 10 GLU A 462 0.09 SIDE CHAIN REMARK 500 10 GLU A 470 0.07 SIDE CHAIN REMARK 500 10 GLU B 16 0.07 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 51 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 1 PRO A 437 -11.73 REMARK 500 1 CYS A 449 -10.75 REMARK 500 1 CYS A 454 -14.09 REMARK 500 1 CYS A 459 11.43 REMARK 500 1 ALA A 478 10.35 REMARK 500 2 CYS A 436 -10.39 REMARK 500 2 PRO A 437 -10.17 REMARK 500 2 CYS A 454 -15.14 REMARK 500 2 CYS A 459 11.93 REMARK 500 2 ALA A 478 10.43 REMARK 500 3 CYS A 436 -10.24 REMARK 500 3 CYS A 454 -13.86 REMARK 500 3 CYS A 459 11.75 REMARK 500 3 ALA A 478 10.39 REMARK 500 3 ARG B 74 -10.23 REMARK 500 4 PRO A 437 -10.48 REMARK 500 4 CYS A 454 -12.38 REMARK 500 4 CYS A 459 12.71 REMARK 500 4 ALA A 478 10.19 REMARK 500 5 PRO A 437 -10.30 REMARK 500 5 CYS A 454 -13.17 REMARK 500 5 CYS A 459 12.24 REMARK 500 5 ALA A 478 10.26 REMARK 500 6 ALA A 417 -11.12 REMARK 500 6 VAL A 427 -10.01 REMARK 500 6 PRO A 437 -10.63 REMARK 500 6 CYS A 454 -14.14 REMARK 500 6 ALA A 457 -10.15 REMARK 500 6 CYS A 459 12.10 REMARK 500 6 ALA A 478 10.26 REMARK 500 7 CYS A 436 -11.43 REMARK 500 7 CYS A 454 -14.24 REMARK 500 7 ALA A 457 -10.70 REMARK 500 7 CYS A 459 13.12 REMARK 500 7 ALA A 478 10.82 REMARK 500 7 ARG B 74 -14.26 REMARK 500 8 CYS A 436 -10.56 REMARK 500 8 PRO A 437 -10.08 REMARK 500 8 CYS A 449 -10.76 REMARK 500 8 CYS A 454 -12.13 REMARK 500 8 CYS A 459 12.44 REMARK 500 8 ALA A 478 10.20 REMARK 500 9 CYS A 436 -10.60 REMARK 500 9 PRO A 437 -10.23 REMARK 500 9 ARG A 445 -11.12 REMARK 500 9 CYS A 454 -11.60 REMARK 500 9 CYS A 459 10.87 REMARK 500 10 PRO A 437 -10.48 REMARK 500 10 CYS A 454 -12.39 REMARK 500 10 CYS A 459 11.92 REMARK 500 REMARK 500 THIS ENTRY HAS 51 MAIN CHAIN PLANARITY DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 436 SG REMARK 620 2 CYS A 439 SG 102.1 REMARK 620 3 CYS A 454 SG 94.2 107.9 REMARK 620 4 CYS A 459 SG 115.8 100.0 133.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 464 SG REMARK 620 2 CYS A 467 SG 95.4 REMARK 620 3 CYS A 475 SG 89.0 109.6 REMARK 620 4 HIS A 479 NE2 101.9 106.6 140.9 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2LWR RELATED DB: PDB REMARK 900 NMR STRUCTURE OF ISOLATED FLY RCAT DOMAIN REMARK 900 RELATED ID: 18642 RELATED DB: BMRB REMARK 900 NMR ASSIGNMENT OF FLY RCAT DOMAIN REMARK 900 RELATED ID: 31177 RELATED DB: BMRB REMARK 900 COVALENT COMPLEX BETWEEN PARKIN CATALYTIC (RCAT) DOMAIN AND REMARK 900 UBIQUITIN DBREF 9C5E A 410 482 UNP Q7KTX7 PRKN_DROME 410 482 DBREF 9C5E B 1 75 UNP P0CG47 UBB_HUMAN 1 75 SEQADV 9C5E 4LJ B 76 UNP P0CG47 INSERTION SEQRES 1 A 73 THR VAL ASP PRO ASN ARG ALA ALA GLU ALA ARG TRP ASP SEQRES 2 A 73 GLU ALA SER ASN VAL THR ILE LYS VAL SER THR LYS PRO SEQRES 3 A 73 CYS PRO LYS CYS ARG THR PRO THR GLU ARG ASP GLY GLY SEQRES 4 A 73 CYS MET HIS MET VAL CYS THR ARG ALA GLY CYS GLY PHE SEQRES 5 A 73 GLU TRP CYS TRP VAL CYS GLN THR GLU TRP THR ARG ASP SEQRES 6 A 73 CYS MET GLY ALA HIS TRP PHE GLY SEQRES 1 B 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 B 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 B 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 B 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 B 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 B 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY 4LJ HET 4LJ B 76 11 HET ZN A 501 1 HET ZN A 502 1 HETNAM 4LJ 1.7.6 3-BROMANYLPROPAN-1-AMINE HETNAM ZN ZINC ION FORMUL 2 4LJ C3 H8 BR N FORMUL 3 ZN 2(ZN 2+) HELIX 1 AA1 ARG A 420 THR A 433 1 14 HELIX 2 AA2 CYS A 436 ARG A 440 5 5 HELIX 3 AA3 THR A 472 TRP A 480 1 9 HELIX 4 AA4 THR B 22 GLY B 35 1 14 HELIX 5 AA5 PRO B 37 ASP B 39 5 3 HELIX 6 AA6 LEU B 56 ASN B 60 5 5 SHEET 1 AA1 2 HIS A 451 VAL A 453 0 SHEET 2 AA1 2 GLU A 462 CYS A 464 -1 O TRP A 463 N MET A 452 SHEET 1 AA2 5 THR B 12 GLU B 16 0 SHEET 2 AA2 5 GLN B 2 THR B 7 -1 N ILE B 3 O LEU B 15 SHEET 3 AA2 5 THR B 66 LEU B 71 1 O LEU B 67 N LYS B 6 SHEET 4 AA2 5 GLN B 41 PHE B 45 -1 N ILE B 44 O HIS B 68 SHEET 5 AA2 5 LYS B 48 GLN B 49 -1 O LYS B 48 N PHE B 45 LINK SG CYS A 449 C1 4LJ B 76 1555 1555 1.87 LINK C GLY B 75 N1 4LJ B 76 1555 1555 1.37 LINK SG CYS A 436 ZN ZN A 502 1555 1555 2.24 LINK SG CYS A 439 ZN ZN A 502 1555 1555 2.27 LINK SG CYS A 454 ZN ZN A 502 1555 1555 2.11 LINK SG CYS A 459 ZN ZN A 502 1555 1555 2.12 LINK SG CYS A 464 ZN ZN A 501 1555 1555 2.57 LINK SG CYS A 467 ZN ZN A 501 1555 1555 2.24 LINK SG CYS A 475 ZN ZN A 501 1555 1555 2.18 LINK NE2 HIS A 479 ZN ZN A 501 1555 1555 1.84 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1