HEADER DNA BINDING PROTEIN/DNA 06-JUN-24 9C5G TITLE STRUCTURE OF R. LEGUMINOSARUM CAPW BOUND TO SINGLE-STRANDED DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPW; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(P*TP*TP*T)-3'); COMPND 7 CHAIN: C, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHIZOBIUM LEGUMINOSARUM; SOURCE 3 ORGANISM_TAXID: 384; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 9 ORGANISM_TAXID: 562 KEYWDS CAPW, WYL, HTH-WYL, TRANSCRIPTION FACTOR, BRXR, DNA BINDING PROTEIN- KEYWDS 2 DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.L.BLANKENCHIP,K.D.CORBETT REVDAT 3 01-JAN-25 9C5G 1 JRNL REVDAT 2 11-DEC-24 9C5G 1 JRNL REVDAT 1 30-OCT-24 9C5G 0 JRNL AUTH C.L.BLANKENCHIP,K.D.CORBETT JRNL TITL BACTERIAL WYL DOMAIN TRANSCRIPTIONAL REPRESSORS SENSE JRNL TITL 2 SINGLE-STRANDED DNA TO CONTROL GENE EXPRESSION. JRNL REF NUCLEIC ACIDS RES. V. 52 13723 2024 JRNL REFN ESSN 1362-4962 JRNL PMID 39588753 JRNL DOI 10.1093/NAR/GKAE1101 REMARK 2 REMARK 2 RESOLUTION. 2.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.1_5286 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 19935 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.340 REMARK 3 FREE R VALUE TEST SET COUNT : 865 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.9100 - 5.0300 0.99 3286 128 0.1968 0.2387 REMARK 3 2 5.0300 - 3.9900 0.99 3193 162 0.1955 0.2286 REMARK 3 3 3.9900 - 3.4900 0.98 3147 165 0.2412 0.3220 REMARK 3 4 3.4900 - 3.1700 0.99 3172 150 0.2951 0.3476 REMARK 3 5 3.1700 - 2.9400 0.99 3174 115 0.3015 0.3820 REMARK 3 6 2.9400 - 2.7700 0.97 3098 145 0.3887 0.3995 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.476 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 77.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 105.5 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4980 REMARK 3 ANGLE : 1.448 6757 REMARK 3 CHIRALITY : 0.081 736 REMARK 3 PLANARITY : 0.011 860 REMARK 3 DIHEDRAL : 13.851 1932 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN C AND RESID 1:3 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.163 -3.179 41.328 REMARK 3 T TENSOR REMARK 3 T11: 1.4847 T22: 1.2881 REMARK 3 T33: 1.4536 T12: -0.1345 REMARK 3 T13: 0.2531 T23: -0.1190 REMARK 3 L TENSOR REMARK 3 L11: 9.0368 L22: 9.4412 REMARK 3 L33: 3.5440 L12: -2.8368 REMARK 3 L13: -4.3809 L23: -0.9655 REMARK 3 S TENSOR REMARK 3 S11: 0.1520 S12: 0.5519 S13: -0.7933 REMARK 3 S21: 1.8157 S22: 0.7162 S23: 1.2103 REMARK 3 S31: 2.0174 S32: -2.1453 S33: 0.2199 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN D AND RESID 1:3 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.431 -12.712 19.402 REMARK 3 T TENSOR REMARK 3 T11: 1.3536 T22: 2.4619 REMARK 3 T33: 2.3020 T12: 0.1243 REMARK 3 T13: -0.3279 T23: -0.1208 REMARK 3 L TENSOR REMARK 3 L11: 7.4668 L22: 3.5132 REMARK 3 L33: 8.7952 L12: -3.4124 REMARK 3 L13: -4.7778 L23: -1.1687 REMARK 3 S TENSOR REMARK 3 S11: -0.1276 S12: 1.8358 S13: -0.4180 REMARK 3 S21: -0.0278 S22: -0.8914 S23: 1.5289 REMARK 3 S31: -0.3425 S32: 0.2045 S33: -0.2355 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 9:71 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.014 -1.570 -11.287 REMARK 3 T TENSOR REMARK 3 T11: 1.4703 T22: 1.5894 REMARK 3 T33: 0.8426 T12: 0.7614 REMARK 3 T13: -0.0576 T23: -0.0957 REMARK 3 L TENSOR REMARK 3 L11: 4.2900 L22: 2.8512 REMARK 3 L33: 3.2181 L12: -2.5028 REMARK 3 L13: -0.6102 L23: -1.1981 REMARK 3 S TENSOR REMARK 3 S11: 1.0757 S12: 1.5785 S13: 0.3278 REMARK 3 S21: -0.8260 S22: -0.5892 S23: -0.0159 REMARK 3 S31: -0.3263 S32: -0.1302 S33: -0.0219 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 72:121 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.781 -0.219 8.537 REMARK 3 T TENSOR REMARK 3 T11: 0.7010 T22: 0.9791 REMARK 3 T33: 0.7339 T12: 0.3634 REMARK 3 T13: -0.0915 T23: -0.0733 REMARK 3 L TENSOR REMARK 3 L11: 1.6565 L22: 4.0377 REMARK 3 L33: 5.7739 L12: -0.9435 REMARK 3 L13: 1.4257 L23: 1.4913 REMARK 3 S TENSOR REMARK 3 S11: 0.3392 S12: 0.3029 S13: 0.0002 REMARK 3 S21: -0.7826 S22: -0.4868 S23: 0.1892 REMARK 3 S31: -0.2791 S32: -0.6967 S33: -0.2107 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 122:196 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.466 5.203 38.529 REMARK 3 T TENSOR REMARK 3 T11: 0.6593 T22: 0.4281 REMARK 3 T33: 0.5557 T12: 0.0684 REMARK 3 T13: 0.1113 T23: -0.0671 REMARK 3 L TENSOR REMARK 3 L11: 3.7794 L22: 6.0693 REMARK 3 L33: 5.7125 L12: 0.1451 REMARK 3 L13: 2.2693 L23: -1.7497 REMARK 3 S TENSOR REMARK 3 S11: -0.0207 S12: -0.3837 S13: 0.2085 REMARK 3 S21: 0.9602 S22: -0.0297 S23: 0.0141 REMARK 3 S31: -0.1143 S32: -0.5428 S33: 0.0410 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN A AND RESID 197:296 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.163 -16.708 32.354 REMARK 3 T TENSOR REMARK 3 T11: 0.8832 T22: 0.7080 REMARK 3 T33: 1.0394 T12: -0.3008 REMARK 3 T13: -0.0641 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 2.3928 L22: 3.2513 REMARK 3 L33: 2.8660 L12: 0.1867 REMARK 3 L13: 0.9996 L23: -0.0645 REMARK 3 S TENSOR REMARK 3 S11: 0.1551 S12: 0.0068 S13: -0.5164 REMARK 3 S21: -0.1342 S22: 0.0218 S23: 0.8697 REMARK 3 S31: 0.7065 S32: -0.7505 S33: -0.2296 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN B AND RESID 7:71 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.074 19.791 15.648 REMARK 3 T TENSOR REMARK 3 T11: 0.8980 T22: 0.7446 REMARK 3 T33: 0.7510 T12: -0.2792 REMARK 3 T13: -0.0418 T23: 0.0272 REMARK 3 L TENSOR REMARK 3 L11: 5.5848 L22: 4.3475 REMARK 3 L33: 7.6419 L12: 1.7729 REMARK 3 L13: -3.5905 L23: -1.3654 REMARK 3 S TENSOR REMARK 3 S11: -0.1264 S12: 0.2189 S13: 0.4939 REMARK 3 S21: -0.1657 S22: 0.0216 S23: -0.2222 REMARK 3 S31: -1.6483 S32: 1.1920 S33: -0.0162 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN B AND RESID 72:121 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.553 4.354 18.946 REMARK 3 T TENSOR REMARK 3 T11: 0.5276 T22: 0.6549 REMARK 3 T33: 0.5730 T12: 0.0763 REMARK 3 T13: -0.0227 T23: -0.0431 REMARK 3 L TENSOR REMARK 3 L11: 4.2917 L22: 2.4344 REMARK 3 L33: 3.9680 L12: 0.2021 REMARK 3 L13: 1.1936 L23: 1.3955 REMARK 3 S TENSOR REMARK 3 S11: -0.1160 S12: 0.3274 S13: -0.2381 REMARK 3 S21: -0.4336 S22: 0.1176 S23: -0.0061 REMARK 3 S31: -0.2820 S32: -0.2708 S33: -0.0748 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: ( CHAIN B AND RESID 122:196 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.044 -11.871 6.614 REMARK 3 T TENSOR REMARK 3 T11: 0.8677 T22: 2.2538 REMARK 3 T33: 1.1917 T12: 0.0181 REMARK 3 T13: -0.3148 T23: -0.1533 REMARK 3 L TENSOR REMARK 3 L11: 3.9026 L22: 1.9999 REMARK 3 L33: 3.1450 L12: -0.0528 REMARK 3 L13: 2.2166 L23: -0.5728 REMARK 3 S TENSOR REMARK 3 S11: 0.1186 S12: 0.4705 S13: -0.5367 REMARK 3 S21: -0.4567 S22: 0.0934 S23: 1.5501 REMARK 3 S31: 0.6632 S32: -2.2326 S33: -0.3883 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: ( CHAIN B AND RESID 197:296 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.465 1.162 26.901 REMARK 3 T TENSOR REMARK 3 T11: 0.6661 T22: 1.0991 REMARK 3 T33: 1.1189 T12: 0.1560 REMARK 3 T13: 0.2791 T23: -0.0502 REMARK 3 L TENSOR REMARK 3 L11: 4.8281 L22: 3.9501 REMARK 3 L33: 7.4646 L12: -0.3113 REMARK 3 L13: 0.8962 L23: 0.6243 REMARK 3 S TENSOR REMARK 3 S11: 0.2310 S12: -0.3939 S13: 0.6247 REMARK 3 S21: -0.0733 S22: -0.2808 S23: 1.0658 REMARK 3 S31: -0.0332 S32: -1.0407 S33: -0.1313 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 9 through 295 or REMARK 3 (resid 296 and (name N or name CA or name REMARK 3 C or name O or name CB )))) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and ((resid 9 and (name N or REMARK 3 name CA or name C or name O or name CB )) REMARK 3 or resid 10 through 296)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : ens_2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : chain "C" REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : chain "D" REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9C5G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUN-24. REMARK 100 THE DEPOSITION ID IS D_1000284818. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-DEC-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20022 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.770 REMARK 200 RESOLUTION RANGE LOW (A) : 38.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.92 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.92600 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 0.1 M SODIUM REMARK 280 ACETATE, 22% PEG4000, PH 8.5, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.00400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -1 REMARK 465 ASN A 0 REMARK 465 ALA A 1 REMARK 465 THR A 2 REMARK 465 ASP A 3 REMARK 465 GLU A 4 REMARK 465 LYS A 5 REMARK 465 ARG A 6 REMARK 465 PRO A 7 REMARK 465 TRP A 8 REMARK 465 ASP A 297 REMARK 465 SER B -1 REMARK 465 ASN B 0 REMARK 465 ALA B 1 REMARK 465 THR B 2 REMARK 465 ASP B 3 REMARK 465 GLU B 4 REMARK 465 LYS B 5 REMARK 465 ARG B 6 REMARK 465 ASP B 297 REMARK 465 DT C 4 REMARK 465 DT C 5 REMARK 465 DT C 6 REMARK 465 DT C 7 REMARK 465 DT D 4 REMARK 465 DT D 5 REMARK 465 DT D 6 REMARK 465 DT D 7 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 9 CG SD CE REMARK 470 ARG A 118 CG CD NE CZ NH1 NH2 REMARK 470 TRP B 8 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 8 CZ3 CH2 REMARK 470 ARG B 118 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 296 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 264 OD2 ASP B 256 1.81 REMARK 500 OE2 GLU B 123 NH2 ARG B 126 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT C 1 P DT C 1 OP3 -0.127 REMARK 500 DT D 1 P DT D 1 OP3 -0.128 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 87 CA - CB - CG ANGL. DEV. = 18.1 DEGREES REMARK 500 LEU A 193 CB - CG - CD2 ANGL. DEV. = -10.5 DEGREES REMARK 500 LEU B 87 CB - CG - CD1 ANGL. DEV. = -11.9 DEGREES REMARK 500 LEU B 257 CB - CG - CD2 ANGL. DEV. = -11.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 118 -168.39 -166.15 REMARK 500 GLN A 266 -41.29 63.60 REMARK 500 LYS B 71 -143.97 -99.20 REMARK 500 ARG B 118 -169.14 -165.05 REMARK 500 GLN B 266 -41.46 63.11 REMARK 500 REMARK 500 REMARK: NULL DBREF 9C5G A -1 297 PDB 9C5G 9C5G -1 297 DBREF 9C5G B -1 297 PDB 9C5G 9C5G -1 297 DBREF 9C5G C 1 7 PDB 9C5G 9C5G 1 7 DBREF 9C5G D 1 7 PDB 9C5G 9C5G 1 7 SEQRES 1 A 299 SER ASN ALA THR ASP GLU LYS ARG PRO TRP MET GLN ASN SEQRES 2 A 299 ARG ARG PHE GLU PHE ILE GLU TRP LYS LEU PHE TRP GLU SEQRES 3 A 299 GLY ALA LEU ASN ARG SER ASP LEU GLU GLU THR PHE GLU SEQRES 4 A 299 ILE SER THR PRO GLN THR SER ILE ASP LEU ARG ARG TYR SEQRES 5 A 299 ARG GLU LEU ALA GLY ASP ASN ILE GLU TYR ASP ALA THR SEQRES 6 A 299 ASP LYS THR PHE LYS PRO THR LYS GLY MET LYS PRO SER SEQRES 7 A 299 PHE LEU LYS VAL SER ALA ASP ARG LEU LEU LEU GLN LEU SEQRES 8 A 299 ARG ALA LEU LEU THR GLY ALA LEU PRO ARG LYS GLU ILE SEQRES 9 A 299 TRP PHE ARG GLU MET PRO PRO MET ASP MET ALA PRO ASP SEQRES 10 A 299 ILE VAL ARG ASN VAL ASP PRO GLU CYS LEU ARG LEU VAL SEQRES 11 A 299 LEU GLU ALA ILE ARG LEU LYS ARG SER VAL GLU VAL ARG SEQRES 12 A 299 TYR GLN SER LEU THR ASN SER ARG VAL ARG GLU ILE ALA SEQRES 13 A 299 PRO HIS ALA LEU ALA PHE ASP GLY TYR ARG TRP HIS VAL SEQRES 14 A 299 ARG ALA TRP ALA CYS ASP ARG ASP ASP PHE ARG ASP PHE SEQRES 15 A 299 VAL LEU THR ARG ILE ASP ASP ILE LYS PRO GLY SER LEU SEQRES 16 A 299 ALA ASN TYR ASP PRO GLU ASP ASP VAL GLU TRP THR THR SEQRES 17 A 299 VAL VAL THR LEU ASP LEU ARG PRO HIS PRO GLY LEU THR SEQRES 18 A 299 GLU GLU GLN ALA LEU ALA ILE GLN ARG ASP TYR SER MET SEQRES 19 A 299 SER ASP GLY MET ARG LYS ILE ASP VAL ARG LEU SER MET SEQRES 20 A 299 ALA TYR TYR PHE ILE MET ARG MET ASN LEU ASP LEU GLU SEQRES 21 A 299 ASP LEU PRO PRO ALA ARG ALA GLN LEU SER LEU HIS ASN SEQRES 22 A 299 ILE SER ASP ILE ARG LYS SER ILE SER GLU ALA LYS SER SEQRES 23 A 299 GLU SER LYS ARG ARG ILE ILE ALA ARG GLN ASN LYS ASP SEQRES 1 B 299 SER ASN ALA THR ASP GLU LYS ARG PRO TRP MET GLN ASN SEQRES 2 B 299 ARG ARG PHE GLU PHE ILE GLU TRP LYS LEU PHE TRP GLU SEQRES 3 B 299 GLY ALA LEU ASN ARG SER ASP LEU GLU GLU THR PHE GLU SEQRES 4 B 299 ILE SER THR PRO GLN THR SER ILE ASP LEU ARG ARG TYR SEQRES 5 B 299 ARG GLU LEU ALA GLY ASP ASN ILE GLU TYR ASP ALA THR SEQRES 6 B 299 ASP LYS THR PHE LYS PRO THR LYS GLY MET LYS PRO SER SEQRES 7 B 299 PHE LEU LYS VAL SER ALA ASP ARG LEU LEU LEU GLN LEU SEQRES 8 B 299 ARG ALA LEU LEU THR GLY ALA LEU PRO ARG LYS GLU ILE SEQRES 9 B 299 TRP PHE ARG GLU MET PRO PRO MET ASP MET ALA PRO ASP SEQRES 10 B 299 ILE VAL ARG ASN VAL ASP PRO GLU CYS LEU ARG LEU VAL SEQRES 11 B 299 LEU GLU ALA ILE ARG LEU LYS ARG SER VAL GLU VAL ARG SEQRES 12 B 299 TYR GLN SER LEU THR ASN SER ARG VAL ARG GLU ILE ALA SEQRES 13 B 299 PRO HIS ALA LEU ALA PHE ASP GLY TYR ARG TRP HIS VAL SEQRES 14 B 299 ARG ALA TRP ALA CYS ASP ARG ASP ASP PHE ARG ASP PHE SEQRES 15 B 299 VAL LEU THR ARG ILE ASP ASP ILE LYS PRO GLY SER LEU SEQRES 16 B 299 ALA ASN TYR ASP PRO GLU ASP ASP VAL GLU TRP THR THR SEQRES 17 B 299 VAL VAL THR LEU ASP LEU ARG PRO HIS PRO GLY LEU THR SEQRES 18 B 299 GLU GLU GLN ALA LEU ALA ILE GLN ARG ASP TYR SER MET SEQRES 19 B 299 SER ASP GLY MET ARG LYS ILE ASP VAL ARG LEU SER MET SEQRES 20 B 299 ALA TYR TYR PHE ILE MET ARG MET ASN LEU ASP LEU GLU SEQRES 21 B 299 ASP LEU PRO PRO ALA ARG ALA GLN LEU SER LEU HIS ASN SEQRES 22 B 299 ILE SER ASP ILE ARG LYS SER ILE SER GLU ALA LYS SER SEQRES 23 B 299 GLU SER LYS ARG ARG ILE ILE ALA ARG GLN ASN LYS ASP SEQRES 1 C 7 DT DT DT DT DT DT DT SEQRES 1 D 7 DT DT DT DT DT DT DT HET SO4 B 301 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 O4 S 2- FORMUL 6 HOH *8(H2 O) HELIX 1 AA1 MET A 9 GLU A 24 1 16 HELIX 2 AA2 ASN A 28 GLU A 37 1 10 HELIX 3 AA3 SER A 39 GLY A 55 1 17 HELIX 4 AA4 SER A 81 THR A 94 1 14 HELIX 5 AA5 PRO A 98 ILE A 102 5 5 HELIX 6 AA6 ASP A 121 LYS A 135 1 15 HELIX 7 AA7 ASP A 197 ASP A 200 5 4 HELIX 8 AA8 ASP A 201 THR A 206 1 6 HELIX 9 AA9 THR A 219 TYR A 230 1 12 HELIX 10 AB1 LEU A 243 MET A 253 1 11 HELIX 11 AB2 PRO A 261 GLN A 266 1 6 HELIX 12 AB3 ASN A 271 ASN A 295 1 25 HELIX 13 AB4 TRP B 8 GLU B 24 1 17 HELIX 14 AB5 ASN B 28 GLU B 37 1 10 HELIX 15 AB6 SER B 39 GLY B 55 1 17 HELIX 16 AB7 SER B 81 THR B 94 1 14 HELIX 17 AB8 PRO B 98 ILE B 102 5 5 HELIX 18 AB9 ASP B 121 LYS B 135 1 15 HELIX 19 AC1 ASP B 197 ASP B 200 5 4 HELIX 20 AC2 ASP B 201 THR B 206 1 6 HELIX 21 AC3 THR B 219 TYR B 230 1 12 HELIX 22 AC4 LEU B 243 MET B 253 1 11 HELIX 23 AC5 PRO B 261 GLN B 266 1 6 HELIX 24 AC6 ASN B 271 ASN B 295 1 25 SHEET 1 AA1 2 ILE A 58 ASP A 61 0 SHEET 2 AA1 2 THR A 66 PRO A 69 -1 O LYS A 68 N GLU A 59 SHEET 1 AA2 4 MET A 110 MET A 112 0 SHEET 2 AA2 4 SER B 148 PHE B 160 1 O PHE B 160 N ASP A 111 SHEET 3 AA2 4 TRP B 165 ALA B 171 -1 O TRP B 170 N ALA B 154 SHEET 4 AA2 4 ASP B 176 VAL B 181 -1 O PHE B 180 N VAL B 167 SHEET 1 AA3 4 MET A 110 MET A 112 0 SHEET 2 AA3 4 SER B 148 PHE B 160 1 O PHE B 160 N ASP A 111 SHEET 3 AA3 4 ARG B 136 GLN B 143 -1 N VAL B 140 O ARG B 151 SHEET 4 AA3 4 ILE B 185 LEU B 193 -1 O ASP B 186 N ARG B 141 SHEET 1 AA4 5 PHE A 177 VAL A 181 0 SHEET 2 AA4 5 TRP A 165 ALA A 171 -1 N VAL A 167 O PHE A 180 SHEET 3 AA4 5 SER A 148 PHE A 160 -1 N HIS A 156 O ARG A 168 SHEET 4 AA4 5 VAL A 138 GLN A 143 -1 N VAL A 140 O ARG A 151 SHEET 5 AA4 5 ILE A 185 PRO A 190 -1 O ASP A 186 N ARG A 141 SHEET 1 AA5 4 PHE A 177 VAL A 181 0 SHEET 2 AA5 4 TRP A 165 ALA A 171 -1 N VAL A 167 O PHE A 180 SHEET 3 AA5 4 SER A 148 PHE A 160 -1 N HIS A 156 O ARG A 168 SHEET 4 AA5 4 MET B 110 MET B 112 1 O ASP B 111 N PHE A 160 SHEET 1 AA6 3 ARG A 237 ARG A 242 0 SHEET 2 AA6 3 VAL A 207 PRO A 214 -1 N LEU A 210 O ILE A 239 SHEET 3 AA6 3 LEU A 267 LEU A 269 -1 O SER A 268 N ARG A 213 SHEET 1 AA7 2 GLU B 59 ASP B 61 0 SHEET 2 AA7 2 THR B 66 LYS B 68 -1 O LYS B 68 N GLU B 59 SHEET 1 AA8 3 ARG B 237 ARG B 242 0 SHEET 2 AA8 3 VAL B 207 PRO B 214 -1 N VAL B 208 O VAL B 241 SHEET 3 AA8 3 LEU B 267 LEU B 269 -1 O SER B 268 N ARG B 213 CRYST1 77.955 62.008 82.335 90.00 93.48 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012828 0.000000 0.000780 0.00000 SCALE2 0.000000 0.016127 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012168 0.00000 MTRIX1 1 -0.381328 0.476069 -0.792431 37.20231 1 MTRIX2 1 0.494223 -0.619428 -0.609960 1.81540 1 MTRIX3 1 -0.781238 -0.624233 0.000921 30.51676 1 MTRIX1 2 -0.396590 0.463937 -0.792136 37.59040 1 MTRIX2 2 0.550708 -0.570142 -0.609637 1.22404 1 MTRIX3 2 -0.734463 -0.678012 -0.029381 31.07739 1