HEADER VIRUS LIKE PARTICLE 12-JUN-24 9C8H TITLE CRYO-EM STRUCTURE OF EV-D68 A2 A-PARTICLE COMPND MOL_ID: 1; COMPND 2 MOLECULE: VP1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: VP2; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: VP3; COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN ENTEROVIRUS D68; SOURCE 3 ORGANISM_COMMON: EV68, EV-68; SOURCE 4 ORGANISM_TAXID: 42789; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HUMAN ENTEROVIRUS D68; SOURCE 10 ORGANISM_COMMON: EV68, EV-68; SOURCE 11 ORGANISM_TAXID: 42789; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HUMAN ENTEROVIRUS D68; SOURCE 17 ORGANISM_COMMON: EV68, EV-68; SOURCE 18 ORGANISM_TAXID: 42789; SOURCE 19 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 20 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS EV-D68, B3 SUBCLADE, VLP, VIRUS LIKE PARTICLE EXPDTA ELECTRON MICROSCOPY AUTHOR J.CHENG,P.W.KRUG,H.LEI,D.L.MOSS,R.HUANG,Z.C.LANG,A.J.MORTON,C.SHEN, AUTHOR 2 T.C.PIERSON,T.ZHOU,T.J.RUCKWARDT,P.D.KWONG REVDAT 2 03-DEC-25 9C8H 1 JRNL REVDAT 1 21-MAY-25 9C8H 0 JRNL AUTH J.CHENG,P.W.KRUG,H.LEI,D.L.MOSS,Z.C.LANG,A.J.MORTON, JRNL AUTH 2 C.H.SHEN,S.PLETNEV,R.K.HUANG,T.C.PIERSON,T.ZHOU, JRNL AUTH 3 T.J.RUCKWARDT,P.D.KWONG JRNL TITL STRUCTURAL INSIGHTS FROM VACCINE CANDIDATES FOR EV-D68. JRNL REF COMMUN BIOL V. 8 860 2025 JRNL REFN ESSN 2399-3642 JRNL PMID 40467847 JRNL DOI 10.1038/S42003-025-08253-Y REMARK 2 REMARK 2 RESOLUTION. 3.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.960 REMARK 3 NUMBER OF PARTICLES : 859 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9C8H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JUN-24. REMARK 100 THE DEPOSITION ID IS D_1000284641. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : ENTEROVIRUS REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 BIOQUANTUM (6K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : 4D-STEM REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5450.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.809017 -0.500000 0.309017 102.57794 REMARK 350 BIOMT2 2 0.500000 0.309017 -0.809017 262.12147 REMARK 350 BIOMT3 2 0.309017 0.809017 0.500000 -165.97459 REMARK 350 BIOMT1 3 0.500000 -0.309017 0.809017 3.21553 REMARK 350 BIOMT2 3 0.309017 -0.809017 -0.500000 528.68669 REMARK 350 BIOMT3 3 0.809017 0.500000 -0.309017 -5.20284 REMARK 350 BIOMT1 4 0.500000 0.309017 0.809017 -160.77175 REMARK 350 BIOMT2 4 -0.309017 -0.809017 0.500000 431.31159 REMARK 350 BIOMT3 4 0.809017 -0.500000 -0.309017 260.13416 REMARK 350 BIOMT1 5 0.809017 0.500000 0.309017 -162.75906 REMARK 350 BIOMT2 5 -0.500000 0.309017 0.809017 104.56525 REMARK 350 BIOMT3 5 0.309017 -0.809017 0.500000 263.34969 REMARK 350 BIOMT1 6 -0.500000 -0.309017 0.809017 270.06154 REMARK 350 BIOMT2 6 -0.309017 -0.809017 -0.500000 693.60659 REMARK 350 BIOMT3 6 0.809017 -0.500000 0.309017 98.02693 REMARK 350 BIOMT1 7 -0.309017 0.809017 0.500000 3.49631 REMARK 350 BIOMT2 7 -0.809017 -0.500000 0.309017 532.83484 REMARK 350 BIOMT3 7 0.500000 -0.309017 0.809017 -1.33547 REMARK 350 BIOMT1 8 0.309017 0.809017 -0.500000 100.87141 REMARK 350 BIOMT2 8 -0.809017 0.500000 0.309017 267.49784 REMARK 350 BIOMT3 8 0.500000 0.309017 0.809017 -165.32276 REMARK 350 BIOMT1 9 0.500000 -0.309017 -0.809017 427.61776 REMARK 350 BIOMT2 9 -0.309017 0.809017 -0.500000 264.28231 REMARK 350 BIOMT3 9 0.809017 0.500000 0.309017 -167.31007 REMARK 350 BIOMT1 10 0.000000 -1.000000 0.000000 532.18300 REMARK 350 BIOMT2 10 0.000000 0.000000 -1.000000 527.63200 REMARK 350 BIOMT3 10 1.000000 0.000000 0.000000 -4.55101 REMARK 350 BIOMT1 11 0.309017 0.809017 -0.500000 100.87141 REMARK 350 BIOMT2 11 0.809017 -0.500000 -0.309017 263.17616 REMARK 350 BIOMT3 11 -0.500000 -0.309017 -0.809017 689.91275 REMARK 350 BIOMT1 12 0.500000 -0.309017 -0.809017 427.61775 REMARK 350 BIOMT2 12 0.309017 -0.809017 0.500000 266.39169 REMARK 350 BIOMT3 12 -0.809017 -0.500000 -0.309017 691.90006 REMARK 350 BIOMT1 13 0.000000 -1.000000 0.000000 532.18300 REMARK 350 BIOMT2 13 0.000000 0.000000 1.000000 3.04200 REMARK 350 BIOMT3 13 -1.000000 0.000000 0.000000 529.14100 REMARK 350 BIOMT1 14 -0.500000 -0.309017 0.809017 270.06154 REMARK 350 BIOMT2 14 0.309017 0.809017 0.500000 -162.93259 REMARK 350 BIOMT3 14 -0.809017 0.500000 -0.309017 426.56306 REMARK 350 BIOMT1 15 -0.309017 0.809017 0.500000 3.49631 REMARK 350 BIOMT2 15 0.809017 0.500000 -0.309017 -2.16084 REMARK 350 BIOMT3 15 -0.500000 0.309017 -0.809017 525.92547 REMARK 350 BIOMT1 16 -0.809017 -0.500000 -0.309017 696.45107 REMARK 350 BIOMT2 16 -0.500000 0.309017 0.809017 104.56525 REMARK 350 BIOMT3 16 -0.309017 0.809017 -0.500000 261.24030 REMARK 350 BIOMT1 17 -1.000000 0.000000 0.000000 533.69201 REMARK 350 BIOMT2 17 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 17 0.000000 0.000000 -1.000000 524.58999 REMARK 350 BIOMT1 18 -0.809017 0.500000 -0.309017 431.11407 REMARK 350 BIOMT2 18 0.500000 0.309017 -0.809017 262.12146 REMARK 350 BIOMT3 18 -0.309017 -0.809017 -0.500000 690.56459 REMARK 350 BIOMT1 19 -0.500000 0.309017 -0.809017 530.47647 REMARK 350 BIOMT2 19 0.309017 -0.809017 -0.500000 528.68669 REMARK 350 BIOMT3 19 -0.809017 -0.500000 0.309017 529.79284 REMARK 350 BIOMT1 20 -0.500000 -0.309017 -0.809017 694.46376 REMARK 350 BIOMT2 20 -0.309017 -0.809017 0.500000 431.31159 REMARK 350 BIOMT3 20 -0.809017 0.500000 0.309017 264.45584 REMARK 350 BIOMT1 21 0.809017 -0.500000 -0.309017 264.68516 REMARK 350 BIOMT2 21 -0.500000 -0.309017 -0.809017 692.95476 REMARK 350 BIOMT3 21 0.309017 0.809017 -0.500000 96.32040 REMARK 350 BIOMT1 22 0.309017 -0.809017 0.500000 267.90070 REMARK 350 BIOMT2 22 -0.809017 -0.500000 -0.309017 694.94206 REMARK 350 BIOMT3 22 0.500000 -0.309017 -0.809017 423.06675 REMARK 350 BIOMT1 23 0.000000 0.000000 1.000000 4.55100 REMARK 350 BIOMT2 23 -1.000000 0.000000 0.000000 532.18300 REMARK 350 BIOMT3 23 0.000000 -1.000000 0.000000 527.63200 REMARK 350 BIOMT1 24 0.309017 0.809017 0.500000 -161.42359 REMARK 350 BIOMT2 24 -0.809017 0.500000 -0.309017 429.60506 REMARK 350 BIOMT3 24 -0.500000 -0.309017 0.809017 265.51053 REMARK 350 BIOMT1 25 0.809017 0.500000 -0.309017 -0.65184 REMARK 350 BIOMT2 25 -0.500000 0.309017 -0.809017 528.96747 REMARK 350 BIOMT3 25 -0.309017 0.809017 0.500000 -1.05469 REMARK 350 BIOMT1 26 -0.500000 0.309017 0.809017 106.07425 REMARK 350 BIOMT2 26 -0.309017 0.809017 -0.500000 264.28230 REMARK 350 BIOMT3 26 -0.809017 -0.500000 -0.309017 691.90006 REMARK 350 BIOMT1 27 0.000000 1.000000 0.000000 1.50900 REMARK 350 BIOMT2 27 0.000000 0.000000 -1.000000 527.63200 REMARK 350 BIOMT3 27 -1.000000 0.000000 0.000000 529.14100 REMARK 350 BIOMT1 28 0.500000 0.309017 -0.809017 263.63047 REMARK 350 BIOMT2 28 -0.309017 -0.809017 -0.500000 693.60659 REMARK 350 BIOMT3 28 -0.809017 0.500000 -0.309017 426.56306 REMARK 350 BIOMT1 29 0.309017 -0.809017 -0.500000 530.19569 REMARK 350 BIOMT2 29 -0.809017 -0.500000 0.309017 532.83484 REMARK 350 BIOMT3 29 -0.500000 0.309017 -0.809017 525.92547 REMARK 350 BIOMT1 30 -0.309017 -0.809017 0.500000 432.82060 REMARK 350 BIOMT2 30 -0.809017 0.500000 0.309017 267.49784 REMARK 350 BIOMT3 30 -0.500000 -0.309017 -0.809017 689.91275 REMARK 350 BIOMT1 31 0.000000 1.000000 0.000000 1.50900 REMARK 350 BIOMT2 31 0.000000 0.000000 1.000000 3.04200 REMARK 350 BIOMT3 31 1.000000 0.000000 0.000000 -4.55101 REMARK 350 BIOMT1 32 0.500000 0.309017 -0.809017 263.63047 REMARK 350 BIOMT2 32 0.309017 0.809017 0.500000 -162.93259 REMARK 350 BIOMT3 32 0.809017 -0.500000 0.309017 98.02693 REMARK 350 BIOMT1 33 0.309017 -0.809017 -0.500000 530.19570 REMARK 350 BIOMT2 33 0.809017 0.500000 -0.309017 -2.16084 REMARK 350 BIOMT3 33 0.500000 -0.309017 0.809017 -1.33547 REMARK 350 BIOMT1 34 -0.309017 -0.809017 0.500000 432.82060 REMARK 350 BIOMT2 34 0.809017 -0.500000 -0.309017 263.17616 REMARK 350 BIOMT3 34 0.500000 0.309017 0.809017 -165.32276 REMARK 350 BIOMT1 35 -0.500000 0.309017 0.809017 106.07425 REMARK 350 BIOMT2 35 0.309017 -0.809017 0.500000 266.39169 REMARK 350 BIOMT3 35 0.809017 0.500000 0.309017 -167.31007 REMARK 350 BIOMT1 36 -0.309017 -0.809017 -0.500000 695.11560 REMARK 350 BIOMT2 36 0.809017 -0.500000 0.309017 101.06893 REMARK 350 BIOMT3 36 -0.500000 -0.309017 0.809017 265.51053 REMARK 350 BIOMT1 37 -0.809017 -0.500000 0.309017 534.34385 REMARK 350 BIOMT2 37 0.500000 -0.309017 0.809017 1.70653 REMARK 350 BIOMT3 37 -0.309017 0.809017 0.500000 -1.05469 REMARK 350 BIOMT1 38 -0.809017 0.500000 0.309017 269.00685 REMARK 350 BIOMT2 38 0.500000 0.309017 0.809017 -162.28076 REMARK 350 BIOMT3 38 0.309017 0.809017 -0.500000 96.32040 REMARK 350 BIOMT1 39 -0.309017 0.809017 -0.500000 265.79131 REMARK 350 BIOMT2 39 0.809017 0.500000 0.309017 -164.26807 REMARK 350 BIOMT3 39 0.500000 -0.309017 -0.809017 423.06675 REMARK 350 BIOMT1 40 0.000000 0.000000 -1.000000 529.14100 REMARK 350 BIOMT2 40 1.000000 0.000000 0.000000 -1.50901 REMARK 350 BIOMT3 40 0.000000 -1.000000 0.000000 527.63200 REMARK 350 BIOMT1 41 0.809017 -0.500000 0.309017 102.57794 REMARK 350 BIOMT2 41 -0.500000 -0.309017 0.809017 268.55253 REMARK 350 BIOMT3 41 -0.309017 -0.809017 -0.500000 690.56459 REMARK 350 BIOMT1 42 0.500000 -0.309017 0.809017 3.21553 REMARK 350 BIOMT2 42 -0.309017 0.809017 0.500000 1.98731 REMARK 350 BIOMT3 42 -0.809017 -0.500000 0.309017 529.79284 REMARK 350 BIOMT1 43 0.500000 0.309017 0.809017 -160.77175 REMARK 350 BIOMT2 43 0.309017 0.809017 -0.500000 99.36241 REMARK 350 BIOMT3 43 -0.809017 0.500000 0.309017 264.45584 REMARK 350 BIOMT1 44 0.809017 0.500000 0.309017 -162.75906 REMARK 350 BIOMT2 44 0.500000 -0.309017 -0.809017 426.10875 REMARK 350 BIOMT3 44 -0.309017 0.809017 -0.500000 261.24031 REMARK 350 BIOMT1 45 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 45 0.000000 -1.000000 0.000000 530.67400 REMARK 350 BIOMT3 45 0.000000 0.000000 -1.000000 524.59000 REMARK 350 BIOMT1 46 0.000000 0.000000 1.000000 4.55101 REMARK 350 BIOMT2 46 1.000000 0.000000 0.000000 -1.50900 REMARK 350 BIOMT3 46 0.000000 1.000000 0.000000 -3.04200 REMARK 350 BIOMT1 47 0.309017 0.809017 0.500000 -161.42359 REMARK 350 BIOMT2 47 0.809017 -0.500000 0.309017 101.06894 REMARK 350 BIOMT3 47 0.500000 0.309017 -0.809017 259.07946 REMARK 350 BIOMT1 48 0.809017 0.500000 -0.309017 -0.65184 REMARK 350 BIOMT2 48 0.500000 -0.309017 0.809017 1.70653 REMARK 350 BIOMT3 48 0.309017 -0.809017 -0.500000 525.64469 REMARK 350 BIOMT1 49 0.809017 -0.500000 -0.309017 264.68516 REMARK 350 BIOMT2 49 0.500000 0.309017 0.809017 -162.28076 REMARK 350 BIOMT3 49 -0.309017 -0.809017 0.500000 428.26959 REMARK 350 BIOMT1 50 0.309017 -0.809017 0.500000 267.90070 REMARK 350 BIOMT2 50 0.809017 0.500000 0.309017 -164.26807 REMARK 350 BIOMT3 50 -0.500000 0.309017 0.809017 101.52325 REMARK 350 BIOMT1 51 -0.309017 0.809017 -0.500000 265.79131 REMARK 350 BIOMT2 51 -0.809017 -0.500000 -0.309017 694.94207 REMARK 350 BIOMT3 51 -0.500000 0.309017 0.809017 101.52325 REMARK 350 BIOMT1 52 0.000000 0.000000 -1.000000 529.14100 REMARK 350 BIOMT2 52 -1.000000 0.000000 0.000000 532.18300 REMARK 350 BIOMT3 52 0.000000 1.000000 0.000000 -3.04200 REMARK 350 BIOMT1 53 -0.309017 -0.809017 -0.500000 695.11560 REMARK 350 BIOMT2 53 -0.809017 0.500000 -0.309017 429.60506 REMARK 350 BIOMT3 53 0.500000 0.309017 -0.809017 259.07946 REMARK 350 BIOMT1 54 -0.809017 -0.500000 0.309017 534.34384 REMARK 350 BIOMT2 54 -0.500000 0.309017 -0.809017 528.96747 REMARK 350 BIOMT3 54 0.309017 -0.809017 -0.500000 525.64469 REMARK 350 BIOMT1 55 -0.809017 0.500000 0.309017 269.00684 REMARK 350 BIOMT2 55 -0.500000 -0.309017 -0.809017 692.95475 REMARK 350 BIOMT3 55 -0.309017 -0.809017 0.500000 428.26959 REMARK 350 BIOMT1 56 -0.500000 -0.309017 -0.809017 694.46376 REMARK 350 BIOMT2 56 0.309017 0.809017 -0.500000 99.36240 REMARK 350 BIOMT3 56 0.809017 -0.500000 -0.309017 260.13415 REMARK 350 BIOMT1 57 -0.809017 -0.500000 -0.309017 696.45107 REMARK 350 BIOMT2 57 0.500000 -0.309017 -0.809017 426.10875 REMARK 350 BIOMT3 57 0.309017 -0.809017 0.500000 263.34969 REMARK 350 BIOMT1 58 -1.000000 0.000000 0.000000 533.69201 REMARK 350 BIOMT2 58 0.000000 -1.000000 0.000000 530.67400 REMARK 350 BIOMT3 58 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 59 -0.809017 0.500000 -0.309017 431.11407 REMARK 350 BIOMT2 59 -0.500000 -0.309017 0.809017 268.55253 REMARK 350 BIOMT3 59 0.309017 0.809017 0.500000 -165.97460 REMARK 350 BIOMT1 60 -0.500000 0.309017 -0.809017 530.47648 REMARK 350 BIOMT2 60 -0.309017 0.809017 0.500000 1.98731 REMARK 350 BIOMT3 60 0.809017 0.500000 -0.309017 -5.20284 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 1 REMARK 465 GLU A 2 REMARK 465 SER A 3 REMARK 465 ILE A 4 REMARK 465 ILE A 5 REMARK 465 LYS A 6 REMARK 465 THR A 7 REMARK 465 ALA A 8 REMARK 465 THR A 9 REMARK 465 ASP A 10 REMARK 465 THR A 11 REMARK 465 VAL A 12 REMARK 465 LYS A 13 REMARK 465 SER A 14 REMARK 465 GLU A 15 REMARK 465 ILE A 16 REMARK 465 ASN A 17 REMARK 465 ALA A 18 REMARK 465 GLU A 19 REMARK 465 LEU A 20 REMARK 465 GLY A 21 REMARK 465 VAL A 22 REMARK 465 VAL A 23 REMARK 465 PRO A 24 REMARK 465 SER A 25 REMARK 465 LEU A 26 REMARK 465 ASN A 27 REMARK 465 ALA A 28 REMARK 465 VAL A 29 REMARK 465 GLU A 30 REMARK 465 THR A 31 REMARK 465 GLY A 32 REMARK 465 ALA A 33 REMARK 465 SER A 34 REMARK 465 SER A 35 REMARK 465 ASN A 36 REMARK 465 THR A 37 REMARK 465 GLU A 38 REMARK 465 PRO A 39 REMARK 465 GLU A 40 REMARK 465 GLU A 41 REMARK 465 ALA A 42 REMARK 465 ILE A 43 REMARK 465 GLN A 44 REMARK 465 THR A 45 REMARK 465 ARG A 46 REMARK 465 THR A 47 REMARK 465 VAL A 48 REMARK 465 ILE A 49 REMARK 465 ASN A 50 REMARK 465 GLN A 51 REMARK 465 HIS A 52 REMARK 465 GLY A 53 REMARK 465 VAL A 54 REMARK 465 GLY A 268 REMARK 465 LYS A 269 REMARK 465 GLU A 270 REMARK 465 ARG A 271 REMARK 465 ALA A 272 REMARK 465 PRO A 273 REMARK 465 ASN A 274 REMARK 465 ALA A 275 REMARK 465 LEU A 276 REMARK 465 ASN A 277 REMARK 465 ALA A 278 REMARK 465 ILE A 279 REMARK 465 ILE A 280 REMARK 465 GLY A 281 REMARK 465 ASN A 282 REMARK 465 ARG A 283 REMARK 465 GLU A 284 REMARK 465 SER A 285 REMARK 465 VAL A 286 REMARK 465 LYS A 287 REMARK 465 THR A 288 REMARK 465 MET A 289 REMARK 465 PRO A 290 REMARK 465 HIS A 291 REMARK 465 ASP A 292 REMARK 465 ILE A 293 REMARK 465 ARG A 294 REMARK 465 LEU A 295 REMARK 465 VAL A 296 REMARK 465 SER B 1 REMARK 465 PRO B 2 REMARK 465 SER B 3 REMARK 465 ALA B 4 REMARK 465 GLU B 5 REMARK 465 ALA B 6 REMARK 465 CYS B 7 REMARK 465 GLY B 8 REMARK 465 TYR B 9 REMARK 465 SER B 10 REMARK 465 ASP B 11 REMARK 465 ARG B 12 REMARK 465 VAL B 13 REMARK 465 LEU B 14 REMARK 465 GLN B 15 REMARK 465 LEU B 16 REMARK 465 LYS B 17 REMARK 465 LEU B 18 REMARK 465 GLY B 19 REMARK 465 ASN B 20 REMARK 465 SER B 21 REMARK 465 ALA B 22 REMARK 465 ILE B 23 REMARK 465 VAL B 24 REMARK 465 THR B 25 REMARK 465 GLN B 26 REMARK 465 GLU B 27 REMARK 465 ALA B 28 REMARK 465 ALA B 29 REMARK 465 HIS B 45 REMARK 465 GLU B 46 REMARK 465 ALA B 47 REMARK 465 VAL B 48 REMARK 465 ALA B 49 REMARK 465 ILE B 50 REMARK 465 ASP B 51 REMARK 465 LYS B 52 REMARK 465 PRO B 53 REMARK 465 THR B 54 REMARK 465 GLN B 55 REMARK 465 PRO B 56 REMARK 465 GLU B 57 REMARK 465 THR B 58 REMARK 465 THR B 247 REMARK 465 GLN B 248 REMARK 465 GLU C 237 REMARK 465 HIS C 238 REMARK 465 LEU C 239 REMARK 465 HIS C 240 REMARK 465 GLU C 241 REMARK 465 ALA C 242 REMARK 465 GLU C 243 REMARK 465 ALA C 244 REMARK 465 ALA C 245 REMARK 465 TYR C 246 REMARK 465 GLN C 247 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 178 CB PRO A 178 CG 0.798 REMARK 500 PRO A 178 CG PRO A 178 CD -0.420 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 176 CB - CG - OD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 PRO A 178 C - N - CD ANGL. DEV. = 20.4 DEGREES REMARK 500 PRO A 178 CA - N - CD ANGL. DEV. = -33.9 DEGREES REMARK 500 PRO A 178 N - CA - CB ANGL. DEV. = -8.7 DEGREES REMARK 500 PRO A 178 CB - CG - CD ANGL. DEV. = -76.7 DEGREES REMARK 500 PRO A 178 N - CD - CG ANGL. DEV. = 20.6 DEGREES REMARK 500 CYS B 236 CA - CB - SG ANGL. DEV. = 7.6 DEGREES REMARK 500 ASP C 221 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 78 82.92 -68.14 REMARK 500 LYS A 88 69.74 -104.26 REMARK 500 MET A 135 -7.31 69.83 REMARK 500 ASP A 158 77.24 -103.15 REMARK 500 PHE A 160 -7.83 69.50 REMARK 500 SER A 175 58.96 -94.27 REMARK 500 PHE A 185 98.06 -68.24 REMARK 500 ALA A 249 80.39 54.40 REMARK 500 GLU B 129 72.81 61.86 REMARK 500 ILE B 146 -51.08 -128.45 REMARK 500 THR B 165 -163.22 -79.64 REMARK 500 MET B 198 114.77 -164.55 REMARK 500 ARG B 220 -0.48 57.98 REMARK 500 THR B 221 54.68 -99.26 REMARK 500 VAL B 222 -77.97 35.58 REMARK 500 MET B 225 -129.56 58.24 REMARK 500 VAL B 226 88.34 51.83 REMARK 500 ARG B 243 -169.41 -123.96 REMARK 500 ASN C 96 60.70 -101.50 REMARK 500 SER C 162 116.43 -160.57 REMARK 500 ASN C 180 -4.13 66.04 REMARK 500 ASN C 199 148.43 67.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-45305 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF EV-D68 A2 A-PARTICLE DBREF1 9C8H A 1 296 UNP A0A8D5ZMD3_HED68 DBREF2 9C8H A A0A8D5ZMD3 565 860 DBREF1 9C8H B 1 248 UNP A0A286KB20_HED68 DBREF2 9C8H B A0A286KB20 70 317 DBREF1 9C8H C 1 247 UNP A0A097BW19_HED68 DBREF2 9C8H C A0A097BW19 318 564 SEQRES 1 A 296 ILE GLU SER ILE ILE LYS THR ALA THR ASP THR VAL LYS SEQRES 2 A 296 SER GLU ILE ASN ALA GLU LEU GLY VAL VAL PRO SER LEU SEQRES 3 A 296 ASN ALA VAL GLU THR GLY ALA SER SER ASN THR GLU PRO SEQRES 4 A 296 GLU GLU ALA ILE GLN THR ARG THR VAL ILE ASN GLN HIS SEQRES 5 A 296 GLY VAL SER GLU THR LEU VAL GLU ASN PHE LEU SER ARG SEQRES 6 A 296 ALA ALA LEU VAL SER LYS ARG SER PHE GLU TYR LYS ASN SEQRES 7 A 296 HIS THR SER SER GLU ALA ARG THR ASP LYS ASN PHE TYR SEQRES 8 A 296 LYS TRP THR ILE ASN THR LYS SER PHE VAL GLN LEU ARG SEQRES 9 A 296 ARG LYS LEU GLU LEU PHE THR TYR LEU ARG PHE ASP ALA SEQRES 10 A 296 GLU ILE THR ILE LEU THR THR VAL ALA VAL GLY SER ASN SEQRES 11 A 296 ASN SER THR TYR MET GLY LEU PRO ASP LEU THR LEU GLN SEQRES 12 A 296 ALA MET PHE VAL PRO THR GLY ALA LEU THR PRO GLU LYS SEQRES 13 A 296 GLN ASP SER PHE HIS TRP GLN SER GLY SER ASN ALA SER SEQRES 14 A 296 VAL PHE PHE LYS VAL SER ASP PRO PRO ALA ARG MET THR SEQRES 15 A 296 ILE PRO PHE MET CYS ILE ASN SER ALA TYR SER VAL PHE SEQRES 16 A 296 TYR ASP GLY PHE ALA GLY PHE GLU LYS ASN GLY LEU TYR SEQRES 17 A 296 GLY ILE ASN PRO ALA ASP THR ILE GLY ASN LEU CYS VAL SEQRES 18 A 296 ARG ILE VAL ASN GLU HIS GLN PRO ILE GLY PHE THR VAL SEQRES 19 A 296 THR VAL ARG VAL TYR MET LYS PRO LYS HIS ILE LYS ALA SEQRES 20 A 296 TRP ALA PRO ARG PRO PRO ARG THR LEU PRO TYR MET SER SEQRES 21 A 296 ILE ALA ASN ALA ASN TYR LYS GLY LYS GLU ARG ALA PRO SEQRES 22 A 296 ASN ALA LEU ASN ALA ILE ILE GLY ASN ARG GLU SER VAL SEQRES 23 A 296 LYS THR MET PRO HIS ASP ILE ARG LEU VAL SEQRES 1 B 248 SER PRO SER ALA GLU ALA CYS GLY TYR SER ASP ARG VAL SEQRES 2 B 248 LEU GLN LEU LYS LEU GLY ASN SER ALA ILE VAL THR GLN SEQRES 3 B 248 GLU ALA ALA ASN TYR CYS CYS ALA TYR GLY GLU TRP PRO SEQRES 4 B 248 ASN TYR LEU PRO ASP HIS GLU ALA VAL ALA ILE ASP LYS SEQRES 5 B 248 PRO THR GLN PRO GLU THR ALA THR ASP ARG PHE TYR THR SEQRES 6 B 248 LEU LYS SER VAL LYS TRP GLU THR GLU SER THR GLY TRP SEQRES 7 B 248 TRP TRP LYS LEU PRO ASP ALA LEU ASN ASN ILE GLY MET SEQRES 8 B 248 PHE GLY GLN ASN VAL GLN HIS HIS TYR LEU TYR ARG SER SEQRES 9 B 248 GLY PHE LEU ILE HIS VAL GLN CYS ASN ALA THR LYS PHE SEQRES 10 B 248 HIS GLN GLY ALA LEU LEU VAL VAL ALA ILE PRO GLU HIS SEQRES 11 B 248 GLN ARG GLY ALA HIS ASN THR THR THR SER PRO GLY PHE SEQRES 12 B 248 ASP ASP ILE MET LYS GLY GLU GLU GLY GLY THR PHE ASN SEQRES 13 B 248 HIS PRO TYR VAL LEU ASP ASP GLY THR SER LEU ALA CYS SEQRES 14 B 248 ALA THR ILE PHE PRO HIS GLN TRP ILE ASN LEU ARG THR SEQRES 15 B 248 ASN ASN SER ALA THR ILE VAL LEU PRO TRP MET ASN ALA SEQRES 16 B 248 ALA PRO MET ASP PHE PRO LEU ARG HIS ASN GLN TRP THR SEQRES 17 B 248 LEU ALA ILE ILE PRO VAL VAL PRO LEU GLY THR ARG THR SEQRES 18 B 248 VAL SER SER MET VAL PRO ILE THR VAL SER ILE ALA PRO SEQRES 19 B 248 MET CYS CYS GLU PHE ASN GLY LEU ARG HIS ALA ILE THR SEQRES 20 B 248 GLN SEQRES 1 C 247 GLY VAL PRO THR TYR LEU LEU PRO GLY SER GLY GLN PHE SEQRES 2 C 247 LEU THR THR ASP ASP HIS SER SER ALA PRO VAL LEU PRO SEQRES 3 C 247 CYS PHE ASN PRO THR PRO GLU MET HIS ILE PRO GLY GLN SEQRES 4 C 247 VAL ARG ASN MET LEU GLU VAL ILE GLN VAL GLU SER MET SEQRES 5 C 247 MET GLU ILE ASN ASN THR GLU ASN ALA VAL GLY MET GLN SEQRES 6 C 247 ARG LEU LYS VAL ASP ILE SER VAL LEU THR ASP VAL ASP SEQRES 7 C 247 GLN LEU LEU PHE ASN ILE PRO LEU ASP ILE GLN LEU ASP SEQRES 8 C 247 GLY PRO LEU ARG ASN THR LEU VAL GLY ASN ILE SER ARG SEQRES 9 C 247 TYR TYR THR HIS TRP SER GLY SER LEU GLU MET THR PHE SEQRES 10 C 247 MET PHE CYS GLY SER PHE MET ALA THR GLY LYS LEU ILE SEQRES 11 C 247 LEU CYS TYR THR PRO PRO GLY GLY SER CYS PRO THR THR SEQRES 12 C 247 ARG GLU THR ALA MET LEU GLY THR HIS ILE VAL TRP ASP SEQRES 13 C 247 PHE GLY LEU GLN SER SER VAL THR LEU VAL ILE PRO TRP SEQRES 14 C 247 ILE SER GLY SER HIS TYR ARG MET PHE ASN ASN ASP ALA SEQRES 15 C 247 LYS SER THR ASN ALA ASN VAL GLY TYR VAL THR CYS PHE SEQRES 16 C 247 MET GLN THR ASN LEU ILE VAL PRO SER GLU SER SER ASN SEQRES 17 C 247 THR CYS SER LEU ILE GLY PHE VAL ALA ALA LYS ASP ASP SEQRES 18 C 247 PHE SER LEU ARG LEU MET ARG ASP SER PRO ASP ILE GLY SEQRES 19 C 247 GLN LEU GLU HIS LEU HIS GLU ALA GLU ALA ALA TYR GLN HELIX 1 AA1 LEU A 58 SER A 64 1 7 HELIX 2 AA2 PHE A 100 GLU A 108 1 9 HELIX 3 AA3 CYS B 33 GLU B 37 5 5 HELIX 4 AA4 PRO B 83 ASN B 87 5 5 HELIX 5 AA5 ILE B 89 HIS B 98 1 10 HELIX 6 AA6 HIS B 157 LEU B 161 5 5 HELIX 7 AA7 SER B 166 PHE B 173 5 8 HELIX 8 AA8 MET C 43 GLN C 48 1 6 HELIX 9 AA9 GLY C 63 LYS C 68 1 6 HELIX 10 AB1 GLY C 92 ASN C 96 5 5 HELIX 11 AB2 THR C 97 ARG C 104 1 8 SHEET 1 AA1 5 ALA A 67 TYR A 76 0 SHEET 2 AA1 5 PHE A 232 PRO A 250 -1 O VAL A 236 N ARG A 72 SHEET 3 AA1 5 PHE A 110 VAL A 127 -1 N ASP A 116 O LYS A 243 SHEET 4 AA1 5 ALA A 179 ILE A 183 -1 O ALA A 179 N ILE A 121 SHEET 5 AA1 5 ALA C 22 PRO C 23 1 O ALA C 22 N THR A 182 SHEET 1 AA2 3 ALA A 67 TYR A 76 0 SHEET 2 AA2 3 PHE A 232 PRO A 250 -1 O VAL A 236 N ARG A 72 SHEET 3 AA2 3 GLN C 39 VAL C 40 -1 O VAL C 40 N ALA A 247 SHEET 1 AA3 4 PHE A 90 THR A 94 0 SHEET 2 AA3 4 ASN A 218 ARG A 222 -1 O LEU A 219 N TRP A 93 SHEET 3 AA3 4 THR A 141 VAL A 147 -1 N MET A 145 O CYS A 220 SHEET 4 AA3 4 ALA A 168 LYS A 173 -1 O ALA A 168 N PHE A 146 SHEET 1 AA4 3 TYR B 64 THR B 65 0 SHEET 2 AA4 3 PRO B 227 LEU B 242 -1 O ILE B 232 N TYR B 64 SHEET 3 AA4 3 VAL B 69 LYS B 70 -1 N VAL B 69 O ILE B 228 SHEET 1 AA5 4 TYR B 64 THR B 65 0 SHEET 2 AA5 4 PRO B 227 LEU B 242 -1 O ILE B 232 N TYR B 64 SHEET 3 AA5 4 HIS B 99 CYS B 112 -1 N HIS B 109 O SER B 231 SHEET 4 AA5 4 SER B 185 LEU B 190 -1 O ILE B 188 N ILE B 108 SHEET 1 AA6 5 GLY B 153 THR B 154 0 SHEET 2 AA6 5 TRP B 78 LEU B 82 -1 N TRP B 79 O GLY B 153 SHEET 3 AA6 5 TRP B 207 PRO B 213 -1 O ILE B 211 N TRP B 78 SHEET 4 AA6 5 LEU B 122 PRO B 128 -1 N ILE B 127 O THR B 208 SHEET 5 AA6 5 HIS B 175 TRP B 177 -1 O GLN B 176 N VAL B 124 SHEET 1 AA7 4 VAL C 69 ILE C 71 0 SHEET 2 AA7 4 CYS C 210 GLY C 214 -1 O CYS C 210 N ILE C 71 SHEET 3 AA7 4 LEU C 113 MET C 118 -1 N MET C 118 O ILE C 213 SHEET 4 AA7 4 SER C 162 ILE C 167 -1 O ILE C 167 N LEU C 113 SHEET 1 AA8 4 VAL C 69 ILE C 71 0 SHEET 2 AA8 4 CYS C 210 GLY C 214 -1 O CYS C 210 N ILE C 71 SHEET 3 AA8 4 LEU C 113 MET C 118 -1 N MET C 118 O ILE C 213 SHEET 4 AA8 4 ALA C 217 ALA C 218 -1 O ALA C 217 N GLU C 114 SHEET 1 AA9 4 ILE C 84 PRO C 85 0 SHEET 2 AA9 4 TYR C 191 MET C 196 -1 O VAL C 192 N ILE C 84 SHEET 3 AA9 4 LYS C 128 TYR C 133 -1 N CYS C 132 O THR C 193 SHEET 4 AA9 4 THR C 151 ASP C 156 -1 O THR C 151 N TYR C 133 SHEET 1 AB1 2 HIS C 108 SER C 110 0 SHEET 2 AB1 2 SER C 223 ARG C 225 -1 O SER C 223 N SER C 110 CISPEP 1 LEU B 82 PRO B 83 0 8.25 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 TER 1705 LYS A 267 TER 3319 ILE B 246 TER 5136 LEU C 236 MASTER 507 0 0 11 38 0 0 6 5133 3 0 62 END